Query 038890
Match_columns 569
No_of_seqs 559 out of 3720
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 04:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.8E-76 3.8E-81 634.5 60.5 545 7-564 169-778 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9.6E-74 2.1E-78 599.1 58.4 522 26-567 88-618 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.3E-65 1.1E-69 545.9 49.7 521 6-561 67-659 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.9E-64 1.5E-68 526.6 54.8 516 20-566 365-926 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.3E-62 7.2E-67 513.9 54.1 526 6-559 386-958 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5E-58 1.1E-62 480.5 41.7 482 6-510 103-609 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-30 1.2E-34 281.5 48.4 503 8-546 347-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-29 2.6E-34 279.0 49.9 457 24-504 430-899 (899)
9 PRK11447 cellulose synthase su 99.9 3.6E-22 7.9E-27 220.3 51.5 482 6-513 163-749 (1157)
10 PRK11447 cellulose synthase su 99.9 9.1E-22 2E-26 217.2 50.3 484 3-504 41-699 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.5E-22 7.7E-27 187.3 31.9 439 28-494 51-508 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 2.5E-21 5.5E-26 181.7 31.5 444 41-512 31-490 (966)
13 PRK09782 bacteriophage N4 rece 99.9 6.5E-19 1.4E-23 186.0 52.0 440 39-506 58-707 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.8E-24 188.0 43.2 392 99-506 130-572 (615)
15 PRK09782 bacteriophage N4 rece 99.9 6.3E-19 1.4E-23 186.1 46.8 468 8-506 62-741 (987)
16 PRK11788 tetratricopeptide rep 99.9 7.5E-20 1.6E-24 180.4 31.1 297 181-513 44-354 (389)
17 PRK10049 pgaA outer membrane p 99.9 1.4E-17 3.1E-22 175.9 44.3 195 281-478 245-463 (765)
18 PRK14574 hmsH outer membrane p 99.9 9E-17 1.9E-21 166.5 45.0 439 21-479 30-521 (822)
19 PRK15174 Vi polysaccharide exp 99.8 1.3E-17 2.9E-22 172.4 38.8 330 136-475 41-385 (656)
20 PRK11788 tetratricopeptide rep 99.8 3.1E-18 6.6E-23 168.9 32.2 287 144-470 42-346 (389)
21 PRK10049 pgaA outer membrane p 99.8 5.9E-17 1.3E-21 171.2 43.8 387 103-505 22-456 (765)
22 PRK15174 Vi polysaccharide exp 99.8 2.2E-17 4.7E-22 170.8 39.1 343 79-441 19-384 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-16 3.2E-21 165.3 43.0 251 216-477 307-577 (615)
24 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.3E-20 158.6 46.5 425 64-506 35-514 (822)
25 KOG2002 TPR-containing nuclear 99.8 4.8E-17 1.1E-21 161.2 33.2 485 7-506 147-746 (1018)
26 KOG2002 TPR-containing nuclear 99.8 5.8E-16 1.3E-20 153.7 36.2 475 10-508 256-801 (1018)
27 KOG2003 TPR repeat-containing 99.8 5.4E-16 1.2E-20 141.0 27.0 441 30-491 206-709 (840)
28 KOG4422 Uncharacterized conser 99.7 1.3E-14 2.9E-19 131.2 31.7 421 22-474 113-593 (625)
29 KOG0495 HAT repeat protein [RN 99.7 1.3E-12 2.8E-17 124.6 44.0 443 39-506 420-881 (913)
30 KOG1915 Cell cycle control pro 99.7 7E-13 1.5E-17 121.8 38.8 479 2-502 85-622 (677)
31 KOG2076 RNA polymerase III tra 99.7 4.6E-12 1E-16 125.6 42.4 458 27-501 141-730 (895)
32 KOG0495 HAT repeat protein [RN 99.7 1E-11 2.2E-16 118.6 42.7 462 7-505 268-782 (913)
33 KOG4422 Uncharacterized conser 99.7 3.3E-13 7.1E-18 122.3 29.7 402 2-436 127-587 (625)
34 PF13429 TPR_15: Tetratricopep 99.7 4.6E-16 9.9E-21 145.2 11.3 257 239-503 13-275 (280)
35 KOG0547 Translocase of outer m 99.7 1.2E-12 2.5E-17 120.9 32.0 382 104-504 123-565 (606)
36 KOG1915 Cell cycle control pro 99.6 1.3E-11 2.9E-16 113.5 35.9 431 96-548 73-535 (677)
37 KOG2003 TPR repeat-containing 99.6 3E-13 6.5E-18 123.4 24.3 428 64-510 202-693 (840)
38 KOG1155 Anaphase-promoting com 99.6 9E-12 2E-16 114.4 31.9 328 169-504 161-494 (559)
39 KOG2076 RNA polymerase III tra 99.6 5.3E-12 1.1E-16 125.2 31.7 344 145-503 147-510 (895)
40 PRK10747 putative protoheme IX 99.6 7.8E-12 1.7E-16 122.2 32.1 246 245-504 129-389 (398)
41 PRK10747 putative protoheme IX 99.6 1.1E-11 2.3E-16 121.3 30.9 277 184-471 96-390 (398)
42 KOG1126 DNA-binding cell divis 99.6 1.3E-12 2.8E-17 125.5 23.4 280 217-507 333-622 (638)
43 PF13429 TPR_15: Tetratricopep 99.5 7.8E-14 1.7E-18 130.2 12.5 253 142-400 13-274 (280)
44 TIGR00540 hemY_coli hemY prote 99.5 5.9E-11 1.3E-15 116.7 32.5 114 185-303 97-217 (409)
45 KOG1155 Anaphase-promoting com 99.5 1.4E-10 3E-15 106.8 31.8 195 273-471 330-536 (559)
46 KOG1173 Anaphase-promoting com 99.5 2.2E-10 4.8E-15 108.2 33.5 440 39-504 30-517 (611)
47 KOG1126 DNA-binding cell divis 99.5 3.4E-12 7.3E-17 122.7 21.0 277 187-476 334-625 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 6.7E-11 1.5E-15 116.3 30.2 280 214-504 95-398 (409)
49 KOG2047 mRNA splicing factor [ 99.5 2.7E-09 5.7E-14 102.4 37.9 511 27-565 104-737 (835)
50 COG3071 HemY Uncharacterized e 99.4 4.3E-10 9.3E-15 102.0 28.8 274 185-469 97-388 (400)
51 COG2956 Predicted N-acetylgluc 99.4 1.2E-10 2.7E-15 102.2 24.2 291 185-510 48-352 (389)
52 COG3071 HemY Uncharacterized e 99.4 5.2E-10 1.1E-14 101.5 28.5 276 149-436 96-387 (400)
53 KOG0547 Translocase of outer m 99.4 2.1E-09 4.5E-14 99.8 31.7 222 243-472 335-567 (606)
54 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.3E-14 96.5 27.3 212 150-367 48-277 (389)
55 TIGR02521 type_IV_pilW type IV 99.4 2.3E-10 5E-15 104.1 23.7 196 308-504 31-231 (234)
56 KOG4318 Bicoid mRNA stability 99.4 2.7E-09 5.9E-14 106.0 31.7 427 47-509 12-598 (1088)
57 KOG2047 mRNA splicing factor [ 99.4 1.3E-07 2.9E-12 91.0 41.2 289 205-497 389-715 (835)
58 KOG1174 Anaphase-promoting com 99.3 3.2E-08 6.9E-13 90.2 34.4 448 9-479 22-508 (564)
59 KOG4318 Bicoid mRNA stability 99.3 8.2E-10 1.8E-14 109.5 24.8 91 123-221 11-101 (1088)
60 KOG2376 Signal recognition par 99.3 2E-07 4.3E-12 89.1 39.7 439 30-502 17-517 (652)
61 KOG4162 Predicted calmodulin-b 99.3 5.2E-08 1.1E-12 95.9 35.8 367 132-506 318-784 (799)
62 KOG1129 TPR repeat-containing 99.3 2.6E-10 5.7E-15 100.2 17.5 225 277-506 227-459 (478)
63 KOG3785 Uncharacterized conser 99.3 1.6E-08 3.5E-13 90.2 28.7 174 34-229 31-211 (557)
64 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.6E-14 106.4 23.9 229 275-503 201-477 (508)
65 TIGR02521 type_IV_pilW type IV 99.3 3.5E-09 7.5E-14 96.3 24.4 194 275-471 33-232 (234)
66 PF12569 NARP1: NMDA receptor- 99.2 1.7E-07 3.7E-12 92.8 36.1 434 31-501 10-516 (517)
67 KOG1173 Anaphase-promoting com 99.2 4.8E-08 1E-12 92.8 30.2 445 21-486 45-533 (611)
68 KOG1129 TPR repeat-containing 99.2 7.4E-10 1.6E-14 97.5 16.2 230 238-476 227-463 (478)
69 PRK12370 invasion protein regu 99.2 6E-09 1.3E-13 106.6 25.4 257 233-506 255-536 (553)
70 KOG4162 Predicted calmodulin-b 99.2 9.9E-08 2.2E-12 94.0 32.0 403 55-476 318-788 (799)
71 KOG1840 Kinesin light chain [C 99.2 3.3E-08 7.2E-13 96.5 28.9 96 375-470 368-478 (508)
72 KOG1156 N-terminal acetyltrans 99.2 3E-07 6.6E-12 88.9 34.5 101 407-507 366-470 (700)
73 PRK12370 invasion protein regu 99.2 8.9E-09 1.9E-13 105.4 26.3 228 271-505 254-502 (553)
74 KOG1156 N-terminal acetyltrans 99.2 1.2E-06 2.7E-11 84.8 37.7 438 37-500 19-506 (700)
75 COG3063 PilF Tfp pilus assembl 99.2 5.2E-09 1.1E-13 88.0 18.3 163 341-507 37-204 (250)
76 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-10 3.1E-15 75.6 6.7 50 337-386 1-50 (50)
77 KOG3785 Uncharacterized conser 99.1 2.8E-07 6E-12 82.5 28.3 404 79-507 36-492 (557)
78 KOG0624 dsRNA-activated protei 99.1 2.1E-07 4.6E-12 82.9 27.2 300 175-480 41-379 (504)
79 KOG1174 Anaphase-promoting com 99.1 1.8E-06 3.8E-11 79.2 33.5 283 232-553 230-521 (564)
80 PF13041 PPR_2: PPR repeat fam 99.1 1.7E-10 3.8E-15 75.2 5.9 50 232-285 1-50 (50)
81 PRK11189 lipoprotein NlpI; Pro 99.1 8.2E-08 1.8E-12 89.9 26.0 218 248-476 40-270 (296)
82 KOG0985 Vesicle coat protein c 99.1 2.7E-06 5.8E-11 86.3 36.7 210 271-501 982-1245(1666)
83 KOG4340 Uncharacterized conser 99.1 5E-07 1.1E-11 79.0 27.0 386 99-506 13-444 (459)
84 PRK11189 lipoprotein NlpI; Pro 99.1 3E-08 6.6E-13 92.8 21.1 212 287-507 40-267 (296)
85 PF12569 NARP1: NMDA receptor- 99.1 1.3E-07 2.7E-12 93.7 26.1 255 244-507 14-293 (517)
86 COG3063 PilF Tfp pilus assembl 99.0 1.6E-07 3.5E-12 79.2 22.0 197 278-477 40-242 (250)
87 KOG1125 TPR repeat-containing 99.0 1.3E-08 2.8E-13 96.9 15.6 219 284-505 296-527 (579)
88 KOG2376 Signal recognition par 99.0 7E-06 1.5E-10 78.9 33.5 116 389-505 356-487 (652)
89 PF04733 Coatomer_E: Coatomer 99.0 9E-08 2E-12 88.2 20.7 249 213-477 11-271 (290)
90 KOG0548 Molecular co-chaperone 99.0 2.2E-06 4.8E-11 81.4 29.7 236 237-488 227-472 (539)
91 KOG0548 Molecular co-chaperone 99.0 7E-07 1.5E-11 84.7 26.2 372 114-506 14-456 (539)
92 KOG3616 Selective LIM binding 99.0 3.3E-06 7.3E-11 82.8 31.0 134 284-436 743-876 (1636)
93 KOG3617 WD40 and TPR repeat-co 99.0 4.4E-06 9.6E-11 83.0 32.1 193 38-261 741-994 (1416)
94 KOG3617 WD40 and TPR repeat-co 99.0 5.2E-06 1.1E-10 82.6 32.2 256 64-366 727-994 (1416)
95 PF04733 Coatomer_E: Coatomer 99.0 4E-08 8.6E-13 90.5 17.1 245 242-505 9-265 (290)
96 PRK10370 formate-dependent nit 98.9 4.9E-07 1.1E-11 78.6 21.6 148 346-507 23-175 (198)
97 cd05804 StaR_like StaR_like; a 98.9 5E-06 1.1E-10 80.9 29.3 194 313-506 119-337 (355)
98 cd05804 StaR_like StaR_like; a 98.9 7.8E-06 1.7E-10 79.6 30.6 192 277-470 118-335 (355)
99 PRK04841 transcriptional regul 98.8 1.4E-05 2.9E-10 88.4 34.5 326 181-507 383-762 (903)
100 KOG1127 TPR repeat-containing 98.8 5.6E-06 1.2E-10 84.1 27.8 173 326-502 801-993 (1238)
101 KOG3616 Selective LIM binding 98.8 8.2E-06 1.8E-10 80.2 27.9 261 209-505 738-1024(1636)
102 KOG0624 dsRNA-activated protei 98.8 1.7E-05 3.7E-10 71.1 27.2 345 138-507 39-423 (504)
103 KOG4340 Uncharacterized conser 98.8 1.2E-06 2.7E-11 76.6 19.8 304 174-501 12-335 (459)
104 KOG1070 rRNA processing protei 98.8 7.5E-07 1.6E-11 93.3 21.3 202 305-510 1455-1668(1710)
105 KOG1128 Uncharacterized conser 98.8 1.4E-06 3.1E-11 85.6 21.5 233 303-561 393-627 (777)
106 TIGR03302 OM_YfiO outer membra 98.8 8.1E-07 1.8E-11 80.7 18.5 183 307-506 32-233 (235)
107 KOG0985 Vesicle coat protein c 98.7 0.00032 7E-09 71.9 35.6 350 95-497 983-1375(1666)
108 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 75.7 23.3 213 286-502 50-299 (320)
109 PRK15359 type III secretion sy 98.7 1E-06 2.2E-11 72.4 14.4 122 360-487 14-137 (144)
110 PRK04841 transcriptional regul 98.7 6.1E-05 1.3E-09 83.2 32.9 261 213-473 462-762 (903)
111 PRK15359 type III secretion sy 98.6 1.6E-06 3.4E-11 71.4 13.8 107 395-506 14-122 (144)
112 KOG1125 TPR repeat-containing 98.6 2.6E-06 5.6E-11 81.7 16.7 250 241-498 292-564 (579)
113 KOG3081 Vesicle coat complex C 98.6 0.00011 2.5E-09 63.8 24.8 223 239-476 46-276 (299)
114 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3E-10 69.3 18.9 156 343-501 70-227 (257)
115 PRK15179 Vi polysaccharide bio 98.6 3.3E-05 7.2E-10 79.9 25.0 130 373-504 85-216 (694)
116 KOG1128 Uncharacterized conser 98.6 3.8E-06 8.3E-11 82.7 17.1 220 269-506 394-617 (777)
117 KOG1127 TPR repeat-containing 98.5 3.1E-05 6.8E-10 79.0 21.8 175 153-334 474-656 (1238)
118 COG5010 TadD Flp pilus assembl 98.5 1.8E-05 3.9E-10 68.7 17.4 135 371-507 63-199 (257)
119 PRK10370 formate-dependent nit 98.5 1.7E-05 3.8E-10 69.0 17.8 154 315-479 23-181 (198)
120 PF12854 PPR_1: PPR repeat 98.5 2.7E-07 5.8E-12 53.8 4.4 32 167-198 2-33 (34)
121 KOG1070 rRNA processing protei 98.5 3.5E-05 7.5E-10 81.4 22.1 219 171-394 1457-1691(1710)
122 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.8E-10 71.9 18.2 182 270-473 30-234 (235)
123 PF12854 PPR_1: PPR repeat 98.4 3.9E-07 8.4E-12 53.2 4.5 32 405-436 2-33 (34)
124 COG4783 Putative Zn-dependent 98.4 9.5E-05 2.1E-09 70.0 21.8 117 384-502 316-434 (484)
125 TIGR02552 LcrH_SycD type III s 98.4 6.3E-06 1.4E-10 67.4 12.5 98 409-506 16-115 (135)
126 PLN02789 farnesyltranstransfer 98.4 0.00039 8.4E-09 65.2 25.4 231 241-481 44-312 (320)
127 PRK15363 pathogenicity island 98.4 6.4E-06 1.4E-10 66.5 11.3 96 411-506 36-133 (157)
128 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.2E-09 75.2 24.0 139 338-480 85-226 (694)
129 KOG2053 Mitochondrial inherita 98.4 0.0047 1E-07 63.2 34.1 67 445-511 439-508 (932)
130 COG4783 Putative Zn-dependent 98.4 0.00025 5.4E-09 67.3 22.9 146 339-506 306-455 (484)
131 KOG3060 Uncharacterized conser 98.3 0.0003 6.6E-09 60.8 20.7 131 349-482 96-231 (289)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.7E-10 75.0 15.0 123 376-503 171-295 (395)
133 PRK14720 transcript cleavage f 98.3 0.00017 3.6E-09 75.6 21.8 227 233-487 30-268 (906)
134 KOG3081 Vesicle coat complex C 98.3 0.00048 1.1E-08 60.0 20.9 110 316-428 145-259 (299)
135 PRK14720 transcript cleavage f 98.3 0.00055 1.2E-08 71.9 25.4 169 133-336 26-197 (906)
136 KOG1914 mRNA cleavage and poly 98.3 0.0049 1.1E-07 59.4 33.3 75 95-180 19-94 (656)
137 TIGR02552 LcrH_SycD type III s 98.2 7.1E-05 1.5E-09 61.1 14.4 114 361-478 5-121 (135)
138 KOG1914 mRNA cleavage and poly 98.2 0.0071 1.5E-07 58.3 35.9 444 22-496 17-530 (656)
139 KOG3060 Uncharacterized conser 98.2 0.00034 7.3E-09 60.5 18.0 162 342-507 55-222 (289)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.7E-09 70.0 15.9 128 310-440 171-298 (395)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00018 4E-09 59.4 15.2 124 377-502 15-144 (145)
142 PF12895 Apc3: Anaphase-promot 98.0 9.7E-06 2.1E-10 59.7 5.5 78 423-501 2-83 (84)
143 cd00189 TPR Tetratricopeptide 98.0 9E-05 2E-09 55.9 11.1 93 413-505 3-97 (100)
144 KOG2053 Mitochondrial inherita 98.0 0.028 6E-07 57.8 36.6 159 342-503 439-606 (932)
145 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00019 4.1E-09 57.0 12.7 99 379-477 7-111 (119)
146 KOG0553 TPR repeat-containing 98.0 8.4E-05 1.8E-09 66.0 11.1 125 384-510 91-220 (304)
147 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.2E-09 57.7 11.9 96 411-506 3-106 (119)
148 PF13414 TPR_11: TPR repeat; P 98.0 3.9E-05 8.4E-10 54.0 7.3 65 441-505 2-67 (69)
149 PF13432 TPR_16: Tetratricopep 97.9 5E-05 1.1E-09 52.7 7.0 59 448-506 3-61 (65)
150 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.6E-10 46.6 4.5 33 341-373 2-34 (35)
151 TIGR00756 PPR pentatricopeptid 97.9 1.3E-05 2.9E-10 47.5 3.5 35 97-137 1-35 (35)
152 COG4235 Cytochrome c biogenesi 97.9 0.0012 2.5E-08 59.3 16.7 101 407-507 153-258 (287)
153 PF09976 TPR_21: Tetratricopep 97.9 0.0013 2.7E-08 54.4 16.1 124 342-468 15-144 (145)
154 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 46.7 3.2 34 96-135 1-34 (34)
155 PF04840 Vps16_C: Vps16, C-ter 97.9 0.026 5.7E-07 52.9 27.5 79 315-399 184-262 (319)
156 PLN03088 SGT1, suppressor of 97.9 0.00021 4.5E-09 68.7 12.3 107 380-488 8-116 (356)
157 PF13812 PPR_3: Pentatricopept 97.8 3.4E-05 7.4E-10 45.3 4.4 33 340-372 2-34 (34)
158 PF05843 Suf: Suppressor of fo 97.8 0.0013 2.8E-08 60.9 16.9 134 340-476 2-141 (280)
159 PLN03088 SGT1, suppressor of 97.8 0.00046 1E-08 66.4 14.4 103 345-450 8-111 (356)
160 PRK02603 photosystem I assembl 97.8 0.00039 8.5E-09 59.4 12.5 95 410-504 35-148 (172)
161 CHL00033 ycf3 photosystem I as 97.8 0.00038 8.2E-09 59.3 12.0 94 409-502 34-139 (168)
162 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.034 7.3E-07 52.6 28.7 133 339-475 397-535 (660)
163 KOG0553 TPR repeat-containing 97.7 0.00014 3.1E-09 64.5 8.3 87 418-504 89-177 (304)
164 cd00189 TPR Tetratricopeptide 97.7 0.00055 1.2E-08 51.5 10.6 92 380-473 6-99 (100)
165 PRK10153 DNA-binding transcrip 97.7 0.0017 3.7E-08 65.3 16.3 141 370-516 333-491 (517)
166 PF14559 TPR_19: Tetratricopep 97.7 8.6E-05 1.9E-09 52.0 5.1 54 453-506 2-55 (68)
167 KOG0550 Molecular chaperone (D 97.7 0.0022 4.7E-08 59.6 15.0 154 347-506 177-351 (486)
168 PF14938 SNAP: Soluble NSF att 97.7 0.0047 1E-07 57.5 17.8 91 345-436 120-222 (282)
169 COG4700 Uncharacterized protei 97.7 0.014 3E-07 48.2 17.7 131 370-504 85-221 (251)
170 PF12895 Apc3: Anaphase-promot 97.6 0.00022 4.7E-09 52.5 6.8 79 353-434 3-82 (84)
171 PF13432 TPR_16: Tetratricopep 97.6 0.00024 5.1E-09 49.2 6.6 61 416-476 3-65 (65)
172 PRK02603 photosystem I assembl 97.6 0.0023 5.1E-08 54.6 13.9 129 339-490 35-165 (172)
173 KOG1130 Predicted G-alpha GTPa 97.6 0.0006 1.3E-08 63.0 10.5 131 375-505 196-344 (639)
174 PF13371 TPR_9: Tetratricopept 97.6 0.00031 6.7E-09 50.0 6.8 59 449-507 2-60 (73)
175 PRK10153 DNA-binding transcrip 97.6 0.0061 1.3E-07 61.4 17.8 139 337-477 335-488 (517)
176 PF14938 SNAP: Soluble NSF att 97.5 0.0046 9.9E-08 57.6 15.5 162 173-345 95-274 (282)
177 PF07079 DUF1347: Protein of u 97.5 0.099 2.1E-06 49.8 34.1 426 34-502 15-521 (549)
178 PRK15331 chaperone protein Sic 97.5 0.0023 5E-08 52.2 11.0 89 416-504 43-133 (165)
179 PF05843 Suf: Suppressor of fo 97.4 0.0018 4E-08 60.0 11.8 129 375-505 2-136 (280)
180 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4.2E-09 40.9 3.4 29 341-369 2-30 (31)
181 PF12688 TPR_5: Tetratrico pep 97.4 0.0035 7.5E-08 49.1 11.3 87 416-502 7-101 (120)
182 PF04840 Vps16_C: Vps16, C-ter 97.4 0.11 2.5E-06 48.7 24.6 111 375-502 178-288 (319)
183 KOG2041 WD40 repeat protein [G 97.4 0.18 3.9E-06 50.6 26.2 120 134-260 689-822 (1189)
184 PF10037 MRP-S27: Mitochondria 97.4 0.0022 4.8E-08 61.8 11.9 94 308-401 66-165 (429)
185 PRK15363 pathogenicity island 97.4 0.017 3.6E-07 47.1 15.1 85 384-470 45-131 (157)
186 KOG0550 Molecular chaperone (D 97.4 0.034 7.3E-07 52.1 18.7 81 146-227 58-141 (486)
187 KOG2280 Vacuolar assembly/sort 97.4 0.2 4.4E-06 50.8 28.3 113 373-501 683-795 (829)
188 PF01535 PPR: PPR repeat; Int 97.4 0.00018 3.9E-09 41.0 2.8 31 97-133 1-31 (31)
189 PF14559 TPR_19: Tetratricopep 97.4 0.00043 9.3E-09 48.5 5.2 48 387-436 4-51 (68)
190 PRK10866 outer membrane biogen 97.4 0.043 9.3E-07 49.6 19.2 184 95-299 31-238 (243)
191 KOG1538 Uncharacterized conser 97.3 0.057 1.2E-06 53.4 20.3 78 374-463 747-825 (1081)
192 PRK10803 tol-pal system protei 97.3 0.0035 7.5E-08 57.0 11.1 93 413-505 146-246 (263)
193 PRK10866 outer membrane biogen 97.2 0.04 8.6E-07 49.8 17.7 56 448-503 181-239 (243)
194 PF10037 MRP-S27: Mitochondria 97.2 0.0048 1E-07 59.6 12.2 117 338-455 65-186 (429)
195 PF13414 TPR_11: TPR repeat; P 97.2 0.0011 2.4E-08 46.5 6.0 65 409-473 2-69 (69)
196 PF08579 RPM2: Mitochondrial r 97.2 0.007 1.5E-07 45.6 10.1 81 236-320 27-116 (120)
197 PF13431 TPR_17: Tetratricopep 97.2 0.00038 8.2E-09 40.5 2.7 33 465-497 2-34 (34)
198 CHL00033 ycf3 photosystem I as 97.2 0.0083 1.8E-07 51.0 12.1 62 341-402 37-100 (168)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.014 3.1E-07 45.7 12.2 90 344-436 6-101 (120)
200 COG4700 Uncharacterized protei 97.2 0.032 6.9E-07 46.2 14.4 126 133-258 85-217 (251)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.25 5.4E-06 47.1 25.6 129 374-503 397-529 (660)
202 PF08579 RPM2: Mitochondrial r 97.1 0.0085 1.8E-07 45.1 10.0 78 344-422 30-116 (120)
203 KOG2796 Uncharacterized conser 97.1 0.038 8.1E-07 48.5 15.2 133 376-509 179-319 (366)
204 PF06239 ECSIT: Evolutionarily 97.1 0.0028 6.1E-08 54.0 7.9 114 84-198 33-165 (228)
205 PF13281 DUF4071: Domain of un 97.1 0.3 6.6E-06 46.4 22.5 165 309-476 142-339 (374)
206 PRK10803 tol-pal system protei 97.1 0.014 3.1E-07 53.1 12.9 99 376-477 145-252 (263)
207 PF13428 TPR_14: Tetratricopep 97.0 0.0015 3.3E-08 40.8 4.7 42 443-484 2-43 (44)
208 PF06239 ECSIT: Evolutionarily 97.0 0.008 1.7E-07 51.3 10.1 93 329-422 35-150 (228)
209 KOG2796 Uncharacterized conser 97.0 0.056 1.2E-06 47.4 15.0 130 235-368 178-315 (366)
210 PF13371 TPR_9: Tetratricopept 97.0 0.0038 8.3E-08 44.3 7.0 63 418-480 3-67 (73)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0048 1E-07 59.0 9.4 63 442-504 75-140 (453)
212 PF13424 TPR_12: Tetratricopep 96.9 0.0024 5.2E-08 46.1 5.7 62 443-504 6-74 (78)
213 PF09205 DUF1955: Domain of un 96.9 0.042 9.1E-07 42.7 12.2 141 349-508 12-152 (161)
214 KOG1258 mRNA processing protei 96.9 0.54 1.2E-05 46.8 29.9 201 307-510 296-512 (577)
215 PF03704 BTAD: Bacterial trans 96.9 0.0066 1.4E-07 50.2 8.6 67 444-510 64-135 (146)
216 COG4235 Cytochrome c biogenesi 96.9 0.091 2E-06 47.5 16.0 104 371-476 153-261 (287)
217 KOG0543 FKBP-type peptidyl-pro 96.8 0.026 5.7E-07 52.9 12.1 96 410-505 257-355 (397)
218 KOG2041 WD40 repeat protein [G 96.7 0.85 1.8E-05 46.1 27.3 55 171-230 851-905 (1189)
219 KOG1538 Uncharacterized conser 96.6 0.14 3.1E-06 50.8 16.3 87 272-367 746-845 (1081)
220 PF13424 TPR_12: Tetratricopep 96.6 0.0045 9.7E-08 44.6 4.9 60 411-470 6-74 (78)
221 KOG1130 Predicted G-alpha GTPa 96.5 0.0068 1.5E-07 56.4 6.7 256 105-367 26-343 (639)
222 PF13525 YfiO: Outer membrane 96.5 0.16 3.4E-06 44.7 14.8 55 105-167 14-72 (203)
223 PF13525 YfiO: Outer membrane 96.4 0.59 1.3E-05 41.0 19.9 177 239-429 10-197 (203)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.04 8.7E-07 53.0 10.6 99 408-509 73-178 (453)
225 KOG0543 FKBP-type peptidyl-pro 96.3 0.051 1.1E-06 51.1 10.9 64 442-505 257-320 (397)
226 PF12921 ATP13: Mitochondrial 96.3 0.075 1.6E-06 42.1 10.3 52 369-420 47-98 (126)
227 PF13512 TPR_18: Tetratricopep 96.2 0.13 2.9E-06 41.1 11.4 115 418-559 18-138 (142)
228 COG1729 Uncharacterized protei 96.1 0.063 1.4E-06 47.9 10.2 57 448-504 184-243 (262)
229 PF13281 DUF4071: Domain of un 96.0 1.1 2.3E-05 42.9 18.4 165 341-506 143-335 (374)
230 PF10300 DUF3808: Protein of u 96.0 0.74 1.6E-05 46.2 18.2 159 344-505 193-376 (468)
231 KOG1941 Acetylcholine receptor 95.9 0.13 2.8E-06 47.5 11.4 161 341-501 85-271 (518)
232 PF03704 BTAD: Bacterial trans 95.9 0.048 1E-06 45.0 8.4 48 385-434 73-120 (146)
233 COG3898 Uncharacterized membra 95.9 1.6 3.6E-05 41.0 29.0 273 216-508 97-395 (531)
234 COG3898 Uncharacterized membra 95.8 1.7 3.6E-05 41.0 28.9 121 140-261 85-215 (531)
235 PF12921 ATP13: Mitochondrial 95.8 0.18 3.9E-06 40.0 10.4 48 406-453 48-99 (126)
236 KOG4555 TPR repeat-containing 95.6 0.21 4.5E-06 38.9 9.6 89 419-507 52-146 (175)
237 PF04053 Coatomer_WDAD: Coatom 95.6 0.54 1.2E-05 46.5 15.2 161 242-438 269-430 (443)
238 PRK11906 transcriptional regul 95.6 0.36 7.9E-06 46.8 13.5 144 354-500 273-431 (458)
239 COG3118 Thioredoxin domain-con 95.6 1 2.3E-05 40.8 15.4 120 383-505 143-265 (304)
240 KOG2610 Uncharacterized conser 95.5 0.21 4.4E-06 45.7 10.9 158 350-510 114-281 (491)
241 COG1729 Uncharacterized protei 95.5 0.2 4.3E-06 44.8 10.7 101 376-479 144-252 (262)
242 COG3118 Thioredoxin domain-con 95.4 2 4.2E-05 39.1 16.8 172 326-499 121-295 (304)
243 PRK15331 chaperone protein Sic 95.4 0.43 9.2E-06 39.3 11.4 87 382-470 45-133 (165)
244 KOG4234 TPR repeat-containing 95.4 0.14 3E-06 43.1 8.6 89 418-506 103-198 (271)
245 PF13512 TPR_18: Tetratricopep 95.3 0.7 1.5E-05 37.1 12.2 20 458-477 115-134 (142)
246 KOG1258 mRNA processing protei 95.3 3.6 7.8E-05 41.2 26.9 119 374-496 297-420 (577)
247 PF04053 Coatomer_WDAD: Coatom 95.3 1.2 2.7E-05 44.1 16.5 160 145-334 269-428 (443)
248 PRK11906 transcriptional regul 95.0 1.6 3.5E-05 42.5 15.8 141 324-468 274-433 (458)
249 KOG3941 Intermediate in Toll s 95.0 0.25 5.4E-06 44.0 9.5 99 327-426 53-174 (406)
250 COG4649 Uncharacterized protei 94.9 1.2 2.6E-05 36.8 12.3 52 453-504 143-195 (221)
251 COG0457 NrfG FOG: TPR repeat [ 94.8 2.7 5.9E-05 37.3 28.1 196 308-505 59-265 (291)
252 PF08631 SPO22: Meiosis protei 94.6 3.8 8.3E-05 38.0 23.4 119 215-335 5-148 (278)
253 PF07719 TPR_2: Tetratricopept 94.6 0.12 2.5E-06 29.8 4.8 32 444-475 3-34 (34)
254 PF02259 FAT: FAT domain; Int 94.6 4.7 0.0001 39.0 20.2 150 338-489 145-305 (352)
255 smart00299 CLH Clathrin heavy 94.6 2.1 4.6E-05 34.8 15.5 127 342-488 10-137 (140)
256 PF00515 TPR_1: Tetratricopept 94.5 0.091 2E-06 30.3 4.2 32 443-474 2-33 (34)
257 KOG1941 Acetylcholine receptor 94.5 0.7 1.5E-05 42.9 11.4 163 236-401 85-273 (518)
258 PF10300 DUF3808: Protein of u 94.4 6.2 0.00013 39.8 21.3 76 186-261 247-332 (468)
259 KOG3941 Intermediate in Toll s 94.4 0.33 7.2E-06 43.3 8.9 118 82-200 51-187 (406)
260 KOG2610 Uncharacterized conser 94.4 1.9 4E-05 39.8 13.7 159 319-480 114-287 (491)
261 KOG2280 Vacuolar assembly/sort 94.4 7.3 0.00016 40.2 31.9 319 131-467 426-795 (829)
262 PRK11619 lytic murein transgly 94.3 8.1 0.00018 40.6 32.3 116 387-502 254-372 (644)
263 PF07035 Mic1: Colon cancer-as 94.1 3 6.5E-05 34.8 13.5 28 126-153 18-45 (167)
264 PRK09687 putative lyase; Provi 94.0 5.1 0.00011 37.1 26.4 60 201-260 35-98 (280)
265 COG0457 NrfG FOG: TPR repeat [ 94.0 4.1 9E-05 36.1 26.0 197 274-474 60-268 (291)
266 KOG1920 IkappaB kinase complex 94.0 12 0.00025 41.1 22.7 89 270-367 932-1027(1265)
267 KOG4555 TPR repeat-containing 93.8 0.89 1.9E-05 35.5 9.0 88 384-474 53-147 (175)
268 smart00299 CLH Clathrin heavy 93.8 3.1 6.7E-05 33.8 16.3 128 138-284 8-136 (140)
269 PF13176 TPR_7: Tetratricopept 93.6 0.18 3.9E-06 29.6 4.1 26 478-503 1-26 (36)
270 KOG1585 Protein required for f 93.6 4.9 0.00011 35.4 17.2 87 412-499 152-250 (308)
271 KOG1920 IkappaB kinase complex 93.5 13 0.00028 40.7 19.7 141 179-337 915-1055(1265)
272 COG4785 NlpI Lipoprotein NlpI, 93.5 2.8 6E-05 36.2 12.3 62 97-167 100-163 (297)
273 PF04184 ST7: ST7 protein; In 93.4 2.6 5.6E-05 41.3 13.6 59 446-504 263-323 (539)
274 PF04184 ST7: ST7 protein; In 93.4 5.9 0.00013 38.9 15.8 99 378-476 263-380 (539)
275 PF07079 DUF1347: Protein of u 93.3 8.4 0.00018 37.4 25.4 50 350-401 473-522 (549)
276 COG3629 DnrI DNA-binding trans 93.3 0.66 1.4E-05 42.2 9.1 61 444-504 155-215 (280)
277 PF13170 DUF4003: Protein of u 93.3 2.1 4.5E-05 39.9 12.6 155 20-181 52-226 (297)
278 KOG2114 Vacuolar assembly/sort 93.2 13 0.00028 39.1 27.2 136 79-230 382-517 (933)
279 KOG1464 COP9 signalosome, subu 92.9 6.6 0.00014 35.1 18.1 227 237-470 68-331 (440)
280 KOG3364 Membrane protein invol 92.8 2 4.4E-05 33.9 9.6 91 439-556 29-124 (149)
281 KOG1586 Protein required for f 92.6 6.7 0.00015 34.4 14.7 90 415-504 118-223 (288)
282 TIGR02561 HrpB1_HrpK type III 92.5 0.94 2E-05 36.5 7.8 68 422-491 22-93 (153)
283 PF09613 HrpB1_HrpK: Bacterial 92.5 1.2 2.6E-05 36.6 8.6 71 421-491 21-93 (160)
284 PF13428 TPR_14: Tetratricopep 92.1 0.39 8.4E-06 29.7 4.4 38 139-177 3-40 (44)
285 KOG4648 Uncharacterized conser 92.0 0.48 1E-05 43.5 6.3 97 380-478 103-201 (536)
286 KOG2114 Vacuolar assembly/sort 91.9 19 0.0004 38.0 26.8 219 23-261 281-517 (933)
287 KOG2066 Vacuolar assembly/sort 91.9 18 0.00039 37.7 25.2 31 309-339 506-536 (846)
288 COG4649 Uncharacterized protei 91.9 5.7 0.00012 33.0 11.6 127 29-165 62-195 (221)
289 PF13176 TPR_7: Tetratricopept 91.8 0.33 7.2E-06 28.5 3.7 27 444-470 1-27 (36)
290 PF00637 Clathrin: Region in C 91.8 0.34 7.3E-06 39.7 5.1 87 141-230 11-97 (143)
291 COG4105 ComL DNA uptake lipopr 91.8 9.3 0.0002 34.2 20.9 58 448-505 173-233 (254)
292 PF10345 Cohesin_load: Cohesin 91.6 20 0.00044 37.7 25.8 191 94-300 28-252 (608)
293 PF09205 DUF1955: Domain of un 91.6 5.7 0.00012 31.4 13.1 133 319-473 13-151 (161)
294 PF13181 TPR_8: Tetratricopept 91.4 0.44 9.6E-06 27.3 3.9 30 444-473 3-32 (34)
295 KOG4570 Uncharacterized conser 91.2 3.2 7E-05 37.9 10.5 102 302-404 58-165 (418)
296 KOG0890 Protein kinase of the 91.2 40 0.00086 40.3 25.9 317 177-508 1388-1734(2382)
297 PF10602 RPN7: 26S proteasome 91.1 6.9 0.00015 33.3 12.3 60 342-401 39-100 (177)
298 KOG4234 TPR repeat-containing 91.0 6.6 0.00014 33.5 11.5 100 384-485 105-211 (271)
299 PF14853 Fis1_TPR_C: Fis1 C-te 90.8 2.3 5E-05 27.5 7.0 51 478-555 3-53 (53)
300 KOG0276 Vesicle coat complex C 90.8 4.9 0.00011 40.3 12.2 132 27-198 616-747 (794)
301 PF07719 TPR_2: Tetratricopept 90.6 0.71 1.5E-05 26.3 4.3 29 477-505 2-30 (34)
302 COG1747 Uncharacterized N-term 90.5 19 0.00042 35.6 16.2 159 136-303 65-235 (711)
303 PRK09687 putative lyase; Provi 90.2 15 0.00033 34.0 25.6 218 64-301 38-262 (280)
304 COG2909 MalT ATP-dependent tra 90.0 30 0.00064 36.9 28.3 215 284-501 426-684 (894)
305 PRK15180 Vi polysaccharide bio 90.0 5.2 0.00011 38.9 11.3 87 420-506 333-421 (831)
306 PF00515 TPR_1: Tetratricopept 90.0 0.87 1.9E-05 26.1 4.3 29 477-505 2-30 (34)
307 COG3629 DnrI DNA-binding trans 90.0 2.6 5.7E-05 38.5 9.1 53 380-434 159-211 (280)
308 PF13431 TPR_17: Tetratricopep 89.8 0.52 1.1E-05 27.2 3.1 32 160-192 2-33 (34)
309 PF10602 RPN7: 26S proteasome 89.7 5.9 0.00013 33.7 10.7 92 411-502 37-139 (177)
310 PF07721 TPR_4: Tetratricopept 89.6 0.6 1.3E-05 24.9 3.1 24 477-500 2-25 (26)
311 PF10345 Cohesin_load: Cohesin 89.6 30 0.00066 36.4 30.7 167 24-199 58-252 (608)
312 PF07035 Mic1: Colon cancer-as 89.3 12 0.00025 31.4 14.3 132 158-301 15-148 (167)
313 PF13174 TPR_6: Tetratricopept 89.2 0.87 1.9E-05 25.7 3.8 25 449-473 7-31 (33)
314 PF04097 Nic96: Nup93/Nic96; 88.9 34 0.00073 36.0 18.7 63 68-132 116-182 (613)
315 KOG0890 Protein kinase of the 88.8 61 0.0013 38.9 24.8 304 146-472 1392-1732(2382)
316 PF13374 TPR_10: Tetratricopep 88.6 1.2 2.6E-05 26.8 4.4 24 479-502 5-28 (42)
317 PF02284 COX5A: Cytochrome c o 88.5 4 8.7E-05 30.4 7.4 64 354-419 25-88 (108)
318 PF13374 TPR_10: Tetratricopep 88.5 1.1 2.4E-05 27.0 4.2 28 442-469 2-29 (42)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 5 0.00011 29.6 7.5 63 354-418 22-84 (103)
320 PF06552 TOM20_plant: Plant sp 87.6 4 8.8E-05 34.2 7.9 75 428-509 53-140 (186)
321 COG4785 NlpI Lipoprotein NlpI, 87.5 18 0.0004 31.4 16.0 179 287-473 79-268 (297)
322 PF00637 Clathrin: Region in C 87.4 0.71 1.5E-05 37.8 3.6 130 101-250 12-141 (143)
323 KOG1585 Protein required for f 87.3 21 0.00045 31.8 17.3 143 141-296 95-250 (308)
324 KOG2300 Uncharacterized conser 87.0 33 0.00072 33.8 30.7 350 2-367 66-473 (629)
325 PRK11619 lytic murein transgly 87.0 45 0.00096 35.3 38.8 435 37-510 45-510 (644)
326 PF08631 SPO22: Meiosis protei 86.5 27 0.00059 32.4 24.6 62 341-403 86-150 (278)
327 PF13181 TPR_8: Tetratricopept 86.2 2.2 4.7E-05 24.3 4.3 29 477-505 2-30 (34)
328 PF13174 TPR_6: Tetratricopept 86.1 1.5 3.2E-05 24.7 3.5 28 478-505 2-29 (33)
329 COG2976 Uncharacterized protei 86.0 5.9 0.00013 33.7 8.1 95 29-132 93-189 (207)
330 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 3.3 7.1E-05 26.9 5.2 35 446-480 5-39 (53)
331 PF09613 HrpB1_HrpK: Bacterial 85.7 19 0.00041 29.8 13.9 68 385-455 21-90 (160)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 85.6 6.8 0.00015 28.9 7.2 51 433-483 33-83 (103)
333 PF02284 COX5A: Cytochrome c o 84.9 7.4 0.00016 29.1 7.2 51 433-483 36-86 (108)
334 TIGR02561 HrpB1_HrpK type III 84.8 16 0.00034 29.8 9.6 108 374-503 7-120 (153)
335 TIGR03504 FimV_Cterm FimV C-te 84.5 2.2 4.7E-05 26.4 3.8 27 480-506 3-29 (44)
336 KOG4648 Uncharacterized conser 83.9 4.4 9.6E-05 37.5 7.0 93 346-442 104-198 (536)
337 KOG2066 Vacuolar assembly/sort 83.4 64 0.0014 34.0 25.5 105 32-149 363-467 (846)
338 COG2976 Uncharacterized protei 83.2 29 0.00062 29.8 13.1 89 417-506 96-189 (207)
339 KOG1550 Extracellular protein 83.1 62 0.0013 33.6 16.0 151 352-508 262-429 (552)
340 KOG2063 Vacuolar assembly/sort 82.8 77 0.0017 34.5 16.7 28 64-93 505-532 (877)
341 smart00028 TPR Tetratricopepti 82.5 3.3 7.1E-05 22.4 4.1 28 446-473 5-32 (34)
342 COG1747 Uncharacterized N-term 82.2 57 0.0012 32.6 22.2 176 306-488 64-251 (711)
343 PF11207 DUF2989: Protein of u 82.2 9.4 0.0002 32.8 7.9 71 120-191 124-197 (203)
344 PRK10941 hypothetical protein; 82.0 10 0.00022 34.8 8.7 63 444-506 183-245 (269)
345 KOG4642 Chaperone-dependent E3 81.9 4.7 0.0001 35.4 6.1 116 384-502 20-143 (284)
346 PF06552 TOM20_plant: Plant sp 81.8 6.4 0.00014 33.1 6.6 47 458-504 51-108 (186)
347 PF09986 DUF2225: Uncharacteri 81.7 11 0.00024 33.3 8.6 64 444-507 120-196 (214)
348 PF14432 DYW_deaminase: DYW fa 81.2 1.9 4.2E-05 33.6 3.4 42 513-566 2-43 (116)
349 COG4105 ComL DNA uptake lipopr 81.2 41 0.00089 30.3 23.9 61 416-476 173-238 (254)
350 KOG0276 Vesicle coat complex C 81.1 65 0.0014 32.9 14.0 132 174-334 616-747 (794)
351 KOG4570 Uncharacterized conser 80.7 12 0.00027 34.3 8.5 93 341-436 66-161 (418)
352 COG3947 Response regulator con 80.4 9.6 0.00021 34.7 7.6 67 444-510 281-352 (361)
353 PF02259 FAT: FAT domain; Int 80.1 58 0.0013 31.3 21.3 62 306-367 144-212 (352)
354 PF11207 DUF2989: Protein of u 78.9 22 0.00047 30.7 9.0 78 245-328 118-198 (203)
355 COG4455 ImpE Protein of avirul 78.5 9 0.00019 33.3 6.6 91 413-513 4-99 (273)
356 PF14561 TPR_20: Tetratricopep 78.4 7.6 0.00016 28.6 5.5 44 463-506 9-52 (90)
357 PRK13800 putative oxidoreducta 77.6 1.2E+02 0.0027 33.7 26.3 268 122-419 623-893 (897)
358 TIGR02508 type_III_yscG type I 77.5 27 0.00059 26.1 9.1 48 212-261 48-95 (115)
359 KOG1464 COP9 signalosome, subu 77.1 57 0.0012 29.5 14.5 187 246-433 39-254 (440)
360 PF07163 Pex26: Pex26 protein; 76.4 34 0.00075 31.1 9.8 89 239-331 88-181 (309)
361 COG4455 ImpE Protein of avirul 76.3 15 0.00033 31.9 7.3 78 341-419 3-81 (273)
362 KOG1308 Hsp70-interacting prot 75.5 2.1 4.5E-05 39.7 2.3 88 423-510 127-216 (377)
363 PF08311 Mad3_BUB1_I: Mad3/BUB 75.3 34 0.00073 27.2 8.9 42 460-501 81-124 (126)
364 smart00386 HAT HAT (Half-A-TPR 74.9 7.3 0.00016 21.5 3.9 30 456-485 1-30 (33)
365 PF04910 Tcf25: Transcriptiona 73.7 91 0.002 30.2 14.5 57 448-504 109-167 (360)
366 KOG0545 Aryl-hydrocarbon recep 73.5 54 0.0012 29.3 10.0 89 418-506 186-294 (329)
367 TIGR03504 FimV_Cterm FimV C-te 73.3 8.7 0.00019 23.7 3.9 24 345-368 5-28 (44)
368 KOG0687 26S proteasome regulat 73.3 81 0.0018 29.5 13.5 24 412-435 106-129 (393)
369 PF08967 DUF1884: Domain of un 71.9 4.3 9.4E-05 28.5 2.6 29 534-562 5-33 (85)
370 KOG0376 Serine-threonine phosp 71.0 9.1 0.0002 37.5 5.4 79 423-501 17-97 (476)
371 cd08819 CARD_MDA5_2 Caspase ac 70.8 37 0.0008 24.7 7.1 64 157-222 22-85 (88)
372 PF09670 Cas_Cas02710: CRISPR- 70.6 1E+02 0.0022 30.2 12.7 53 349-402 141-197 (379)
373 KOG3824 Huntingtin interacting 70.1 14 0.00031 33.8 6.0 87 452-551 126-212 (472)
374 PF07163 Pex26: Pex26 protein; 70.0 35 0.00075 31.1 8.3 83 144-226 90-181 (309)
375 TIGR02508 type_III_yscG type I 69.2 46 0.001 25.0 9.5 87 289-379 21-107 (115)
376 KOG2422 Uncharacterized conser 69.1 1.1E+02 0.0025 31.1 12.3 49 420-468 352-404 (665)
377 PF08424 NRDE-2: NRDE-2, neces 69.0 1.1E+02 0.0023 29.2 15.0 118 427-557 48-171 (321)
378 PF14669 Asp_Glu_race_2: Putat 69.0 73 0.0016 27.2 14.5 177 131-332 2-205 (233)
379 KOG4077 Cytochrome c oxidase, 68.9 35 0.00076 26.8 7.0 56 428-483 70-125 (149)
380 KOG3807 Predicted membrane pro 68.7 64 0.0014 30.1 9.9 20 460-479 380-399 (556)
381 cd08819 CARD_MDA5_2 Caspase ac 67.2 42 0.00091 24.4 6.8 65 293-359 22-86 (88)
382 PF12862 Apc5: Anaphase-promot 67.2 36 0.00079 25.2 7.1 52 453-504 9-69 (94)
383 KOG0551 Hsp90 co-chaperone CNS 66.7 40 0.00086 31.6 8.2 87 416-502 87-179 (390)
384 KOG2396 HAT (Half-A-TPR) repea 65.9 1.5E+02 0.0033 29.7 32.2 79 120-200 89-168 (568)
385 KOG4077 Cytochrome c oxidase, 65.7 48 0.001 26.1 7.2 59 357-417 67-125 (149)
386 PF14863 Alkyl_sulf_dimr: Alky 65.6 46 0.00099 27.0 7.7 63 426-491 57-119 (141)
387 KOG2422 Uncharacterized conser 65.3 1.7E+02 0.0036 30.0 13.0 122 78-199 251-405 (665)
388 KOG0686 COP9 signalosome, subu 64.2 1.5E+02 0.0032 28.9 14.1 87 172-260 150-255 (466)
389 KOG3364 Membrane protein invol 63.9 59 0.0013 26.1 7.5 72 407-478 29-107 (149)
390 PF10579 Rapsyn_N: Rapsyn N-te 63.7 25 0.00053 25.0 5.0 45 454-498 18-65 (80)
391 PF11846 DUF3366: Domain of un 63.5 31 0.00068 29.8 7.1 37 437-473 139-175 (193)
392 KOG4642 Chaperone-dependent E3 63.4 1E+02 0.0022 27.6 9.6 114 349-467 20-142 (284)
393 PF13934 ELYS: Nuclear pore co 62.4 1.2E+02 0.0025 27.2 11.0 103 140-248 79-186 (226)
394 COG5187 RPN7 26S proteasome re 62.3 1.3E+02 0.0028 27.7 11.1 24 376-399 117-140 (412)
395 PRK10941 hypothetical protein; 62.2 49 0.0011 30.4 8.2 65 414-478 185-251 (269)
396 PF13934 ELYS: Nuclear pore co 61.7 1.2E+02 0.0026 27.1 13.8 72 142-217 113-186 (226)
397 KOG1550 Extracellular protein 61.5 2.1E+02 0.0045 29.8 22.3 278 219-507 228-540 (552)
398 KOG4507 Uncharacterized conser 61.4 41 0.00088 34.1 7.8 68 416-483 648-717 (886)
399 PF11846 DUF3366: Domain of un 60.6 38 0.00083 29.3 7.1 51 386-436 120-170 (193)
400 PF10579 Rapsyn_N: Rapsyn N-te 60.5 24 0.00052 25.1 4.5 45 351-395 18-64 (80)
401 KOG0991 Replication factor C, 59.6 1.3E+02 0.0028 26.8 12.2 125 237-374 133-273 (333)
402 smart00777 Mad3_BUB1_I Mad3/BU 58.6 91 0.002 24.7 8.8 41 460-500 81-123 (125)
403 KOG2471 TPR repeat-containing 57.3 2.1E+02 0.0046 28.6 12.8 103 317-422 249-381 (696)
404 PF12862 Apc5: Anaphase-promot 57.2 77 0.0017 23.5 7.8 24 448-471 47-70 (94)
405 PRK13800 putative oxidoreducta 57.0 3.2E+02 0.007 30.6 29.7 256 192-470 624-880 (897)
406 COG5159 RPN6 26S proteasome re 56.4 1.6E+02 0.0036 27.0 15.0 119 143-261 9-152 (421)
407 PF11663 Toxin_YhaV: Toxin wit 56.1 18 0.00039 28.7 3.7 26 120-147 113-138 (140)
408 PF10366 Vps39_1: Vacuolar sor 53.2 1E+02 0.0022 23.7 7.7 26 276-301 42-67 (108)
409 PF09477 Type_III_YscG: Bacter 52.8 1E+02 0.0022 23.5 9.3 79 288-369 21-99 (116)
410 KOG2063 Vacuolar assembly/sort 52.5 3.6E+02 0.0077 29.7 19.0 26 236-261 506-531 (877)
411 KOG4279 Serine/threonine prote 52.2 3.2E+02 0.0069 29.1 13.8 24 453-476 377-400 (1226)
412 KOG4507 Uncharacterized conser 52.2 59 0.0013 33.0 7.2 135 370-506 567-706 (886)
413 PF14689 SPOB_a: Sensor_kinase 51.8 40 0.00086 22.7 4.4 27 478-504 25-51 (62)
414 COG4976 Predicted methyltransf 51.6 27 0.00058 30.7 4.3 51 454-504 7-57 (287)
415 PF12069 DUF3549: Protein of u 51.1 2.3E+02 0.0049 27.1 12.5 87 312-401 170-257 (340)
416 KOG2471 TPR repeat-containing 50.8 2.7E+02 0.0059 27.9 14.4 42 448-489 341-382 (696)
417 COG5191 Uncharacterized conser 49.8 43 0.00094 31.0 5.5 78 406-483 103-183 (435)
418 PF13762 MNE1: Mitochondrial s 49.8 1.2E+02 0.0027 24.7 7.6 82 98-185 41-128 (145)
419 PRK13342 recombination factor 49.8 2.7E+02 0.006 27.6 14.4 115 154-286 154-278 (413)
420 PF10366 Vps39_1: Vacuolar sor 48.9 1.2E+02 0.0026 23.3 8.1 27 341-367 41-67 (108)
421 PF13170 DUF4003: Protein of u 48.3 2.4E+02 0.0052 26.5 19.6 128 356-485 79-226 (297)
422 PF12968 DUF3856: Domain of Un 48.3 1.3E+02 0.0029 23.5 8.1 60 443-502 56-126 (144)
423 cd00280 TRFH Telomeric Repeat 47.7 1.2E+02 0.0025 25.9 7.2 48 153-200 85-139 (200)
424 PF11848 DUF3368: Domain of un 47.6 65 0.0014 20.3 4.7 34 147-180 12-45 (48)
425 COG3947 Response regulator con 47.0 2.4E+02 0.0052 26.2 13.9 57 413-469 282-340 (361)
426 PRK09857 putative transposase; 46.3 1.6E+02 0.0035 27.6 9.0 65 446-510 210-274 (292)
427 KOG1308 Hsp70-interacting prot 46.3 39 0.00085 31.7 4.8 118 385-505 125-244 (377)
428 KOG4567 GTPase-activating prot 46.0 2.6E+02 0.0056 26.2 10.0 84 158-242 264-357 (370)
429 KOG0292 Vesicle coat complex C 45.6 31 0.00067 36.7 4.4 48 420-470 653-700 (1202)
430 PF10255 Paf67: RNA polymerase 45.6 1.1E+02 0.0024 30.0 8.0 56 311-366 125-191 (404)
431 COG4976 Predicted methyltransf 45.0 44 0.00094 29.5 4.6 53 422-474 7-61 (287)
432 PF10255 Paf67: RNA polymerase 45.0 1.3E+02 0.0029 29.5 8.4 56 206-261 125-191 (404)
433 cd08326 CARD_CASP9 Caspase act 44.9 81 0.0018 22.9 5.4 33 186-218 44-76 (84)
434 PF13762 MNE1: Mitochondrial s 44.6 1.7E+02 0.0038 23.9 8.9 81 64-152 40-130 (145)
435 PRK10564 maltose regulon perip 44.4 47 0.001 30.7 5.0 41 340-380 258-298 (303)
436 PF04090 RNA_pol_I_TF: RNA pol 43.9 2.2E+02 0.0047 24.8 10.8 61 339-400 41-102 (199)
437 PRK12798 chemotaxis protein; R 43.5 3.3E+02 0.0072 26.8 20.3 150 321-472 125-287 (421)
438 TIGR02270 conserved hypothetic 42.7 3.5E+02 0.0076 26.8 25.6 234 144-401 45-279 (410)
439 PRK10564 maltose regulon perip 42.1 43 0.00094 31.0 4.4 30 445-474 260-289 (303)
440 PF11838 ERAP1_C: ERAP1-like C 42.0 3.1E+02 0.0066 25.9 18.3 110 390-500 146-261 (324)
441 COG0735 Fur Fe2+/Zn2+ uptake r 41.7 1.7E+02 0.0036 24.0 7.4 65 122-187 6-70 (145)
442 TIGR02270 conserved hypothetic 41.3 3.7E+02 0.008 26.7 24.7 233 179-437 45-279 (410)
443 PF14561 TPR_20: Tetratricopep 41.0 1.4E+02 0.0031 21.9 8.2 53 441-493 21-75 (90)
444 COG0790 FOG: TPR repeat, SEL1 40.9 3E+02 0.0065 25.5 20.8 148 354-508 92-269 (292)
445 PF11848 DUF3368: Domain of un 40.2 95 0.0021 19.6 5.2 34 349-382 12-45 (48)
446 COG2912 Uncharacterized conser 40.2 1.2E+02 0.0026 27.7 6.9 58 447-504 186-243 (269)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 38.7 94 0.002 24.7 5.5 45 42-90 80-124 (126)
448 PRK11639 zinc uptake transcrip 38.7 1.4E+02 0.0031 25.2 6.8 51 96-152 25-75 (169)
449 PF09477 Type_III_YscG: Bacter 38.6 1.8E+02 0.0039 22.3 10.8 79 150-231 19-97 (116)
450 KOG0686 COP9 signalosome, subu 38.5 3.9E+02 0.0085 26.2 15.0 13 424-436 318-330 (466)
451 PF15297 CKAP2_C: Cytoskeleton 37.5 2.1E+02 0.0045 27.3 8.1 53 422-474 114-172 (353)
452 PF11817 Foie-gras_1: Foie gra 37.3 1.8E+02 0.0038 26.5 7.7 55 447-501 183-243 (247)
453 PF07720 TPR_3: Tetratricopept 37.3 87 0.0019 18.3 4.6 17 482-498 7-23 (36)
454 PF08424 NRDE-2: NRDE-2, neces 36.4 3.8E+02 0.0083 25.5 15.8 115 355-472 47-184 (321)
455 TIGR03581 EF_0839 conserved hy 35.6 1.8E+02 0.0039 25.5 6.8 79 425-503 136-235 (236)
456 COG0735 Fur Fe2+/Zn2+ uptake r 35.6 1.7E+02 0.0036 24.0 6.6 47 97-149 21-67 (145)
457 PF06957 COPI_C: Coatomer (COP 35.2 1.2E+02 0.0027 29.9 6.6 45 432-476 288-334 (422)
458 cd00280 TRFH Telomeric Repeat 35.1 1.4E+02 0.0031 25.5 5.9 55 390-444 85-145 (200)
459 PF11768 DUF3312: Protein of u 35.1 5.2E+02 0.011 26.6 11.5 24 312-335 412-435 (545)
460 PF02184 HAT: HAT (Half-A-TPR) 34.6 87 0.0019 17.8 3.2 25 118-144 3-27 (32)
461 PF04910 Tcf25: Transcriptiona 34.2 4.5E+02 0.0097 25.6 15.3 121 170-301 38-167 (360)
462 PF13929 mRNA_stabil: mRNA sta 34.1 3.9E+02 0.0085 24.9 22.3 113 324-436 144-264 (292)
463 KOG0292 Vesicle coat complex C 34.0 6.6E+02 0.014 27.6 11.6 130 317-470 652-781 (1202)
464 PHA02537 M terminase endonucle 33.7 3.4E+02 0.0075 24.3 8.5 52 96-169 64-115 (230)
465 COG5108 RPO41 Mitochondrial DN 33.6 1.9E+02 0.0041 30.2 7.6 47 344-390 33-81 (1117)
466 PRK15180 Vi polysaccharide bio 33.4 5.1E+02 0.011 26.0 27.6 119 38-169 302-423 (831)
467 PRK13342 recombination factor 33.2 5E+02 0.011 25.8 14.7 96 270-383 173-274 (413)
468 PF11817 Foie-gras_1: Foie gra 32.2 1.9E+02 0.0041 26.2 7.1 21 416-436 184-204 (247)
469 PF07575 Nucleopor_Nup85: Nup8 32.0 1.6E+02 0.0035 30.7 7.5 30 487-519 506-535 (566)
470 KOG1586 Protein required for f 31.9 3.8E+02 0.0083 24.1 17.2 22 380-401 160-181 (288)
471 COG2256 MGS1 ATPase related to 31.6 5.1E+02 0.011 25.5 12.6 99 171-287 191-298 (436)
472 PHA02875 ankyrin repeat protei 31.2 5.3E+02 0.011 25.5 11.3 193 254-467 15-224 (413)
473 COG2909 MalT ATP-dependent tra 30.8 7.5E+02 0.016 27.1 29.6 223 213-436 425-685 (894)
474 COG2178 Predicted RNA-binding 30.7 3.6E+02 0.0077 23.4 9.6 19 486-504 131-149 (204)
475 PF09670 Cas_Cas02710: CRISPR- 30.6 5.3E+02 0.011 25.3 11.4 56 242-302 139-198 (379)
476 KOG0376 Serine-threonine phosp 30.4 1.2E+02 0.0025 30.2 5.5 100 348-452 13-115 (476)
477 cd07153 Fur_like Ferric uptake 30.3 1.2E+02 0.0026 23.4 4.9 47 101-153 5-51 (116)
478 COG5108 RPO41 Mitochondrial DN 29.7 1.8E+02 0.0039 30.3 6.7 76 67-147 32-113 (1117)
479 PF12796 Ank_2: Ankyrin repeat 29.5 1.5E+02 0.0032 21.2 5.1 13 124-136 41-53 (89)
480 PF04097 Nic96: Nup93/Nic96; 29.3 7.1E+02 0.015 26.4 23.6 85 315-402 265-355 (613)
481 COG4259 Uncharacterized protei 29.2 1.9E+02 0.0041 21.7 5.0 41 293-333 57-97 (121)
482 PLN03192 Voltage-dependent pot 29.2 6.1E+02 0.013 28.1 11.6 103 124-230 540-646 (823)
483 cd08332 CARD_CASP2 Caspase act 29.0 2.2E+02 0.0047 21.0 5.6 27 187-213 49-75 (90)
484 KOG2396 HAT (Half-A-TPR) repea 28.7 6.3E+02 0.014 25.6 29.8 65 24-93 104-168 (568)
485 PF04190 DUF410: Protein of un 27.0 5E+02 0.011 23.8 17.1 82 408-505 88-170 (260)
486 KOG4814 Uncharacterized conser 26.9 4.7E+02 0.01 27.4 9.0 58 445-502 397-454 (872)
487 PRK09462 fur ferric uptake reg 26.9 3.5E+02 0.0075 22.1 7.2 61 127-188 7-68 (148)
488 KOG4567 GTPase-activating prot 26.7 5.4E+02 0.012 24.2 9.8 76 201-285 276-361 (370)
489 PHA02875 ankyrin repeat protei 26.6 6.3E+02 0.014 24.9 17.1 129 124-257 17-155 (413)
490 cd08326 CARD_CASP9 Caspase act 26.1 2.6E+02 0.0056 20.3 6.2 40 319-358 41-80 (84)
491 KOG2582 COP9 signalosome, subu 25.5 6.2E+02 0.013 24.5 12.3 97 97-200 103-211 (422)
492 KOG2300 Uncharacterized conser 25.4 7.2E+02 0.016 25.2 32.0 377 118-501 25-510 (629)
493 KOG1839 Uncharacterized protei 25.3 1E+03 0.022 27.5 11.8 154 347-501 940-1124(1236)
494 PF14669 Asp_Glu_race_2: Putat 25.0 4.6E+02 0.0099 22.7 14.3 68 268-335 3-78 (233)
495 PF07064 RIC1: RIC1; InterPro 25.0 5.4E+02 0.012 23.6 15.8 155 341-506 84-250 (258)
496 cd07153 Fur_like Ferric uptake 24.8 1.6E+02 0.0034 22.7 4.6 49 29-82 4-52 (116)
497 PF11768 DUF3312: Protein of u 24.6 7.9E+02 0.017 25.3 11.4 24 237-260 411-434 (545)
498 cd08318 Death_NMPP84 Death dom 24.5 49 0.0011 24.1 1.6 22 65-88 65-86 (86)
499 KOG1524 WD40 repeat-containing 24.4 7.7E+02 0.017 25.2 9.8 136 338-490 572-718 (737)
500 PF04190 DUF410: Protein of un 24.4 5.6E+02 0.012 23.5 18.6 83 306-403 88-170 (260)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-76 Score=634.47 Aligned_cols=545 Identities=32% Similarity=0.550 Sum_probs=484.2
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.|..+++.|++.+..|+..++..++..+...+++..+.+++..+.+.|+.+++ .+++.|+.+|+++ |+++.|.+
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~n~Li~~y~k~--g~~~~A~~ 243 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV---DVVNALITMYVKC--GDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc---chHhHHHHHHhcC--CCHHHHHH
Confidence 445555555555555555555555555555555555555666666666666666 7889999999999 99999999
Q ss_pred HhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 038890 87 VFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 166 (569)
+|++|+.+|..+||++|.+|++.|++. +|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~------eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECL------EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHH------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------------- 231 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 231 (569)
|+.||..+||+|+.+|+++|++++|.++|++|..||..+|++++.+|++.|++++|+++|++|.+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999998888888888888887777777777776621
Q ss_pred ------------------------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccc----------------------
Q 038890 232 ------------------------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSV---------------------- 265 (569)
Q Consensus 232 ------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------------------- 265 (569)
++..+|+.|+.+|++.|++++|.++|++|.+.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 1223344445555555555555555555432110
Q ss_pred ----cCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhH
Q 038890 266 ----EEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLA 341 (569)
Q Consensus 266 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 341 (569)
..++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 124789999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS 421 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (569)
|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 422 RAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
+.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|++...|..|++.|.+.|+|++|.++.+.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcccccc
Q 038890 502 MKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSM 564 (569)
Q Consensus 502 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 564 (569)
|++.|++++ |++||+++++.+|.|.+++.+||+.+++.+.++++.++|++.||+||+..+++
T Consensus 717 M~~~g~~k~-~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~ 778 (857)
T PLN03077 717 MRENGLTVD-PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD 778 (857)
T ss_pred HHHcCCCCC-CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc
Confidence 999999999 99999999999999999999999999999999999999999999999887653
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-74 Score=599.08 Aligned_cols=522 Identities=28% Similarity=0.436 Sum_probs=505.0
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC----CCCcccHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSP-CLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK----RSDLYTYN 100 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 100 (569)
.+...++..+...|++++|.++|+.+...+ ..++. .+|+.++..+++. ++++.|.+++..+. .||..+||
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~---~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPA---STYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 367888889999999999999999999865 56788 8999999999999 99999999999886 58999999
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.++.+|++.|+++ .|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.
T Consensus 163 ~Li~~y~k~g~~~------~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 163 RVLLMHVKCGMLI------DARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHhcCCCHH------HHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 9999999999999 99999999964 8999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
+|++.|..+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|+++||.++.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999887765 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 336 (569)
|++|. ..|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.|+++|++.|++++|.++|++|.+
T Consensus 313 f~~M~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 313 YYEMR----DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHH----HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+++|++.|++++|.+++++|+..|+..+|++|+.+|...|+++.|..+++++.+.+|++...|..|+.+|.+.|++++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCccccccccc
Q 038890 497 KTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSMEAQ 567 (569)
Q Consensus 497 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 567 (569)
++++.|.+.|+++. |+++|+++.+.++.|++++..||..+++.+.+.++..+|++.||+||+..+++|..
T Consensus 549 ~v~~~m~~~g~~k~-~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 549 KVVETLKRKGLSMH-PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HHHHHHHHcCCccC-CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 99999999999998 99999999999999999999999999999999999999999999999999888753
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.3e-65 Score=545.91 Aligned_cols=521 Identities=30% Similarity=0.456 Sum_probs=461.2
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
.+.|..+++.|.+.+.+|+..++..++..+...+.+..+.+++..+.+.+..++. .+++.++..|+++ |+++.|.
T Consensus 67 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~n~li~~~~~~--g~~~~A~ 141 (857)
T PLN03077 67 LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV---RLGNAMLSMFVRF--GELVHAW 141 (857)
T ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc---hHHHHHHHHHHhC--CChHHHH
Confidence 4678889999988888999988888888888889999999999999999998888 8999999999999 9999999
Q ss_pred HHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 86 NVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
++|++|++||+.+||.+|.+|++.|+++ +|+++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~------~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFD------EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHH------HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh------------------------------
Q 038890 166 FGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLR------------------------------ 215 (569)
Q Consensus 166 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~------------------------------ 215 (569)
.|+.||..++|+|+.+|+++|++++|.++|++|.++|..+||+++.+|++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999999999998887766666666665555
Q ss_pred ----------------------------------------cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHH
Q 038890 216 ----------------------------------------SGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 216 ----------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
.|++++|.++|++|..+|..+|+.++.+|.+.|++++|++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 5555666666666666778888888889999999999999
Q ss_pred HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 256 ~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
+|++|. ..|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.
T Consensus 376 lf~~M~----~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 376 TYALME----QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHH----HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 999998 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 336 KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechH
Confidence 99999999999999999999999999999986 599999999999999999999999999999998 6788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHH
Q 038890 416 MIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-PLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
|+++|++.|++++|.++|+.+ .||..+|++++.+|.+.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 999999999999999999988 7899999999999999999999999999998865 4467788999999999999999
Q ss_pred HHHHHHHHH-HCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCccc
Q 038890 495 VKKTRNLMK-ERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRG 561 (569)
Q Consensus 495 A~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 561 (569)
|.++|+.|. +.|+.|+...+.. ++....+.+..+++.+.+ ++| +..||...
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~---------lv~~l~r~G~~~eA~~~~----~~m---~~~pd~~~ 659 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYAC---------VVDLLGRAGKLTEAYNFI----NKM---PITPDPAV 659 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHH---------HHHHHHhCCCHHHHHHHH----HHC---CCCCCHHH
Confidence 999999998 6788887322221 233334556677777776 344 35666543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-64 Score=526.57 Aligned_cols=516 Identities=17% Similarity=0.223 Sum_probs=467.7
Q ss_pred CCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCccc
Q 038890 20 SPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCL-QTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYT 98 (569)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 98 (569)
..+++.+.+..+...+.++|++++|.++|+.|.+.++. ++. ..+..++..|.+. |.+++|.++|+.|..|+..+
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~---v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK---IYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHH
Confidence 34456677778888888999999999999999999864 444 6777889999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
|+.+|.+|++.|+++ .|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+
T Consensus 440 yn~LL~a~~k~g~~e------~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 440 FNMLMSVCASSQDID------GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHhCcCHH------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCChhHHHHHHHHHHhCC
Q 038890 179 ISLFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMK------KRNIFSWNSIITGFVQGG 248 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g 248 (569)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999965 899999999999999999999999999995 479999999999999999
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHH
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY 328 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 328 (569)
++++|.++|+.|. ..++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 594 ~ldeA~elf~~M~----e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 594 QVDRAKEVYQMIH----EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred CHHHHHHHHHHHH----HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 329 GVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 329 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RL 748 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hc
Confidence 99999974 68999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM---PMEPDVFVWGALLGGCQM----H-------------------GNV 458 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~~~ 458 (569)
|+.||..+|+.++.+|++.|++++|.+++.+| ++.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 89999999999999999999999999999999 899999999999876542 1 123
Q ss_pred HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchH
Q 038890 459 ELGEKVAQYLIDLD-PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKE 537 (569)
Q Consensus 459 ~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (569)
+.|..+|++|.+.+ .++..+|..++.++.+.+..+.+..+++.|...+..|+...++ ..++.+ ... ..
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~-----~Li~g~----~~~--~~ 897 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS-----TLVDGF----GEY--DP 897 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH-----HHHHhh----ccC--hH
Confidence 67999999999977 5678899999988889999999999999887777766533332 222222 211 35
Q ss_pred HHHHHHHHHHHHHHhCCcccCccc----ccccc
Q 038890 538 ELVLILNGLSKIMKNGGFGQYIRG----LSMEA 566 (569)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~~~~----~~~~~ 566 (569)
++..++ ++|...|+.|+..+ |++++
T Consensus 898 ~A~~l~----~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 898 RAFSLL----EEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHH----HHHHHcCCCCCcccccCceEEEc
Confidence 677777 99999999999973 55543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-62 Score=513.85 Aligned_cols=526 Identities=18% Similarity=0.209 Sum_probs=467.4
Q ss_pred HHHHhhhcCCCCCCCC-CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHH
Q 038890 6 QMVSYSLLNSPAKVSP-PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYA 84 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A 84 (569)
-+.|..+++.|.+.+. +++...+..+...+.+.|.+++|..++..+.. |+. .+|+.++..|++. |+++.|
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~---~Tyn~LL~a~~k~--g~~e~A 456 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL---STFNMLMSVCASS--QDIDGA 456 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH---HHHHHHHHHHHhC--cCHHHH
Confidence 3678999999988885 45666667788889899999999999998875 677 8999999999999 999999
Q ss_pred HHHhhcCC----CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHH
Q 038890 85 TNVFSHIK----RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVY 160 (569)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 160 (569)
.++|+.|. .||..+||.+|.+|++.|+.+ .|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd------~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD------AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999997 489999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038890 161 GQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS------NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--- 231 (569)
Q Consensus 161 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 231 (569)
+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999995 38999999999999999999999999999985
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 -RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
|+..+|+.+|.+|++.|++++|.++|++|. ..|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~----~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMK----KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 577899999999999999999999999999 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMP----KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999995 589999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----c-------------------CCHHHHHHHHHhC---CCCC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----A-------------------GLFSEAERLIRSM---PMEP 440 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p 440 (569)
.|+++.|.++|..|. +.|+.||..+|+.++..|.+ + +..++|..+|++| |+.|
T Consensus 767 ~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 78899999999999876432 1 1246799999999 9999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEE
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDL-DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEV 519 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 519 (569)
|..||+.++.++...++.+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|...|+.|+...-.+ .+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~-~~ 922 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKS-PI 922 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccC-ce
Confidence 9999999998888889999999999887654 466788999999988432 3689999999999999998431111 11
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCC-cccCc
Q 038890 520 DGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGG-FGQYI 559 (569)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~ 559 (569)
.-.++. -+-+..+.++..|-+-.+..-+.| --|..
T Consensus 923 ~~d~~~-----~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~ 958 (1060)
T PLN03218 923 VIDAEE-----LPVFAAEVYLLTILKGLKHRLAAGAKLPNV 958 (1060)
T ss_pred EEEccc-----CcchhHHHHHHHHHHHHHHHHhccCcCCcc
Confidence 111222 233456666666666656666666 34443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-58 Score=480.54 Aligned_cols=482 Identities=18% Similarity=0.278 Sum_probs=440.4
Q ss_pred HHHHhhhcCCCCCCC-CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHH
Q 038890 6 QMVSYSLLNSPAKVS-PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYA 84 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A 84 (569)
.+.|..++..|...+ .+++..++..++..+.+.++++.+.+++..+.+.|+.|++ .+++.|+.+|+++ |+++.|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~---~~~n~Li~~y~k~--g~~~~A 177 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ---YMMNRVLLMHVKC--GMLIDA 177 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch---HHHHHHHHHHhcC--CCHHHH
Confidence 467888888887654 4678889999999999999999999999999999999999 9999999999999 999999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHH
Q 038890 85 TNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVV 164 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 164 (569)
.++|++|++||..+||.+|.+|++.|+++ +|+++|++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~------~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYR------EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHH------HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHH
Q 038890 165 KFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK----KRNIFSWNSI 240 (569)
Q Consensus 165 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 240 (569)
+.|+.||..++|+|+.+|+++|++++|.++|++|.++|+.+||+++.+|++.|++++|+++|++|. .||..||+.+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
+.+|++.|++++|.+++..|. ..|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.||.+|++
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~----~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLI----RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHhccchHHHHHHHHHHH----HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999 78899999999999999999999999999999985 4789999999999999
Q ss_pred cCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 321 CGCVERAYGVFKEMP----KKDTLAWTAMISVFALNGYGKEAFDTFREMEA-EGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.|+.++|.++|++|. .||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999996 47999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+++++. +.|+..+|+.|+.+|...|+++.|..+++++ +..|+ ..+|..++..|.+.|++++|.++++.|.+.+-
T Consensus 484 ~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 484 MIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 998764 5899999999999999999999999999998 77774 67999999999999999999999999998662
Q ss_pred C--ChhHHHHHH---HHH--------HHcCChHHHHHHHHHHHHCCCCCC
Q 038890 474 L--NHAFYVNLC---DMY--------AKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 474 ~--~~~~~~~l~---~~~--------~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
. ....|..+. ..+ ....-++...++..+|.+.|..|+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 111111100 000 001124566778889999999987
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.7e-30 Score=281.53 Aligned_cols=503 Identities=12% Similarity=0.061 Sum_probs=314.8
Q ss_pred HHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHH
Q 038890 8 VSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNV 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~ 87 (569)
.|...++.....+ |.++.....++.++...|++++|...++...+..+ .+. ..+..+...+... |++++|.+.
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~--~~~~~A~~~ 419 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENA---AARTQLGISKLSQ--GDPSEAIAD 419 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH---HHHHHHHHHHHhC--CChHHHHHH
Confidence 3444444433222 33344555566666666666666666666655422 122 3444455555555 555555555
Q ss_pred hhcCCC-------------------------------------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH
Q 038890 88 FSHIKR-------------------------------------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 88 ~~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~ 130 (569)
|+.+.. .+...|+.+...+...|++. +|.+.|+++.+
T Consensus 420 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~a~~ 493 (899)
T TIGR02917 420 LETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA------KAREAFEKALS 493 (899)
T ss_pred HHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHH------HHHHHHHHHHh
Confidence 554432 23344555555555555555 55555555554
Q ss_pred CCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 038890 131 TGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWN 207 (569)
Q Consensus 131 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 207 (569)
.. +.+...+..+...+...|++++|..+++.+.+.++. +..++..+...+.+.|+.++|...++++.. .+...+.
T Consensus 494 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 494 IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 22 112233444444455555555555555555554422 445555555555566666666666655533 2334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHH
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA 284 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~ 284 (569)
.++..+...|++++|..+++.+.+ .+...|..+..++...|++++|...|+.+.+. .+.+...+..+..++.
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Confidence 566666666666666666666542 24456666666666667777777766666521 1334555666666666
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHH
Q 038890 285 YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
..|++++|...++++.+.. +.+...+..++..+...|++++|..+++.+.. .+...+..+...+...|++++|+..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 6777777777776666543 44456666667777777777777777766654 2455666777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-E 439 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 439 (569)
|+++...+ |+..++..+..++...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++ .. +
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 88877743 445666777788888888888888888877543 566778888888888889999999988888 33 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEE
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEV 519 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 519 (569)
++..+++.+...+...|+ ++|+..++++.+..|.++..+..++.++...|++++|.++++++.+.+.. + |....
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~-~~~~~--- 875 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A-AAIRY--- 875 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-hHHHH---
Confidence 467788888888888888 77999999998888888888889999999999999999999999886643 2 22111
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHH
Q 038890 520 DGVVHEFSMKGSPKVVKEELVLILNGL 546 (569)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 546 (569)
.+.......++.+++.+.++++
T Consensus 876 -----~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 876 -----HLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHH
Confidence 0111123345677777777554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-29 Score=278.95 Aligned_cols=457 Identities=10% Similarity=0.058 Sum_probs=395.3
Q ss_pred CCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHH
Q 038890 24 KESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYN 100 (569)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 100 (569)
+......++..+...|++++|..+++.+.+.. +.++ .++..+...|... |++++|.+.|+++.+ .+...+.
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 503 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNA---SLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAA 503 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCc---HHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34445566677777888888888888887653 3445 7889999999999 999999999998763 3556778
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.+...+...|++. +|.+.|+++.+.+ +.+..++..+...+...|+.++|..+++.+.+.++. +...+..++.
T Consensus 504 ~la~~~~~~g~~~------~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 575 (899)
T TIGR02917 504 NLARIDIQEGNPD------DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQ 575 (899)
T ss_pred HHHHHHHHCCCHH------HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 8888899999999 9999999999854 335667888888899999999999999999887643 6677888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREAL 254 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 254 (569)
.|.+.|++++|..+++.+.+ .+...|..+...+...|++++|...|+++.+ .+...+..+..++.+.|++++|.
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999875 4677899999999999999999999998864 35667889999999999999999
Q ss_pred HHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 255 ELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
..|+++.+ ..+.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 656 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 656 TSLKRALE-----LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999863 234568889999999999999999999999998876 667788889999999999999999999987
Q ss_pred CC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 335 PK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 335 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
.. ++..++..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...|+.+.+.. +.++..
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 806 (899)
T TIGR02917 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVV 806 (899)
T ss_pred HhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHH
Confidence 64 455778888999999999999999999998863 4467788889999999999999999999999654 677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
++.+...+...|+ .+|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..++.++.+.|
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 9999999999999 8899999988 4444 55678888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 038890 491 RFDDVKKTRNLMKE 504 (569)
Q Consensus 491 ~~~~A~~~~~~m~~ 504 (569)
++++|.+++++|++
T Consensus 886 ~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 886 RKAEARKELDKLLN 899 (899)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.6e-22 Score=220.30 Aligned_cols=482 Identities=12% Similarity=0.037 Sum_probs=369.5
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCC----------------CCCchhHHH---
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCL----------------QTNDHHSLI--- 66 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~--- 66 (569)
.+.|...++...+.. |.++.....++.++...|+.++|...++++.+.... .++.....+
T Consensus 163 ~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 163 RPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 345666777665555 556777889999999999999999999887653210 000000000
Q ss_pred -------------------------------HHHHHHhhcCCCCChhHHHHHhhcCCC--C-CcccHHHHHHHHhcCCCC
Q 038890 67 -------------------------------TRLLFFCALSVSGSLSYATNVFSHIKR--S-DLYTYNIMIRANACKSSE 112 (569)
Q Consensus 67 -------------------------------~~l~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 112 (569)
......+... |++++|...|++..+ | +...+..+...+.+.|++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1113345556 999999999998763 3 667888999999999999
Q ss_pred CCCCChhHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHH
Q 038890 113 TNDTHSGKCLKLYKQMLCTGISPDCL---TFP------------FLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNS 177 (569)
Q Consensus 113 ~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 177 (569)
+ +|+..|++..+.. |+.. .+. .....+...|++++|...|+++++..+. +...+..
T Consensus 320 ~------eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~ 390 (1157)
T PRK11447 320 A------RAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLG 390 (1157)
T ss_pred H------HHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 9 9999999998853 4432 111 1234567889999999999999998643 6677788
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhHHHHHHH
Q 038890 178 VISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRN------------IFSWNSIIT 242 (569)
Q Consensus 178 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~ 242 (569)
+..++...|++++|.+.|++..+ | +...+..+...|. .++.++|+..++.+.... ...+..+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999876 3 4456666777764 568899999998876421 223556677
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+...|++++|+..|++.++. .+-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 889999999999999998742 23356777888899999999999999999998754 445556666666778899
Q ss_pred ChHHHHHHHhhCCCCC----h---------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 323 CVERAYGVFKEMPKKD----T---------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
+.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 9999999999886431 1 1123456678889999999999872 34455677778889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
+++|+..|+.+.+.. +.+...+..++.+|...|++++|++.++.. ...| +..++..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999654 557889999999999999999999999988 4455 455677788889999999999999999
Q ss_pred HhhcCCCCh------hHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCCCCCc
Q 038890 468 LIDLDPLNH------AFYVNLCDMYAKAGRFDDVKKTRNLMK-ERGIRKEVPG 513 (569)
Q Consensus 468 ~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~ 513 (569)
+....|+++ .++..++..+.+.|++++|...|++.. ..|+.|..|.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 998765543 456677899999999999999999884 4567666554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=9.1e-22 Score=217.17 Aligned_cols=484 Identities=10% Similarity=0.003 Sum_probs=285.3
Q ss_pred hhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchh------------HHHHHHH
Q 038890 3 KKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHH------------SLITRLL 70 (569)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~~l~ 70 (569)
+...+.|.+.|+...... |.++......+.++...|+.++|.+.++.+.+..+....... .....+.
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 344566777777665555 556777888888888999999999999999988644332000 0123345
Q ss_pred HHhhcCCCCChhHHHHHhhcCCCCCcccHHH----HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHH
Q 038890 71 FFCALSVSGSLSYATNVFSHIKRSDLYTYNI----MIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLK 145 (569)
Q Consensus 71 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 145 (569)
..+... |++++|.+.|+.+.+.++..... ........|++. +|++.|+++.+.. | +...+..+..
T Consensus 120 ~ll~~~--g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~------~A~~~L~~ll~~~--P~~~~~~~~LA~ 189 (1157)
T PRK11447 120 RLLATT--GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP------EAINQLQRLNADY--PGNTGLRNTLAL 189 (1157)
T ss_pred HHHHhC--CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH------HHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 567788 99999999999887533322211 111112346666 9999999998853 5 4445666777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCC--------------------------------CcHhH-------------------
Q 038890 146 ECTKRLDGLVGASVYGQVVKFGVC--------------------------------DDVFV------------------- 174 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~g~~--------------------------------~~~~~------------------- 174 (569)
.+...|+.++|...++++.+.... |+...
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 788889999999998887543210 00000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hHHH------
Q 038890 175 --QNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNI---FSWN------ 238 (569)
Q Consensus 175 --~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------ 238 (569)
......++...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 00123456677899999999988765 3 667888888999999999999999988764 321 1121
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 239 ------SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 239 ------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
.....+.+.|++++|...|+++... .+.+...+..+..++...|++++|...|+++.+.. +.+...+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV-----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2234677889999999999998732 23456677778888899999999999999888764 33344444
Q ss_pred HHHHHH------------------------------------------HhcCChHHHHHHHhhCCC--C-ChhHHHHHHH
Q 038890 313 ALVDMY------------------------------------------GKCGCVERAYGVFKEMPK--K-DTLAWTAMIS 347 (569)
Q Consensus 313 ~l~~~~------------------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 347 (569)
.+...| ...|++++|.+.|++..+ | +...+..+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444443 234444444444444432 1 2333444444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----------------------
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY----------------------- 404 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------- 404 (569)
.+...|++++|+..++++.+.. +.+...+..+...+...++.++|...++.+....
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 5555555555555555544321 1122222222223344455555555554432100
Q ss_pred ---------------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 405 ---------------LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 405 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
..+.+...+..+...+.+.|++++|+..|++. ...| +...+..++..+...|++++|++.++.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00112223333444444555555555555544 2233 344555555555555555555555555
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 468 LIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 468 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+.+..|+++..+..++.++.+.|++++|.++++++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555555555555555555555555555555544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-22 Score=187.35 Aligned_cols=439 Identities=13% Similarity=0.125 Sum_probs=346.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHH
Q 038890 28 KLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIR 104 (569)
Q Consensus 28 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 104 (569)
...++.-+.+.|++++|++.-..+-...+...+ ....+-..+... .+.+.-..--....+ .-..+|+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~----~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE----RLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCccc----ceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 455666667778888887766666555433333 222222334443 333332222222222 23477888889
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh-HHHHHHHHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF-VQNSVISLF 182 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~ 182 (569)
.+-..|++. .|+..|+.|++ ++| ....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+....
T Consensus 125 ~~kerg~~~------~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 125 ILKERGQLQ------DALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLL 194 (966)
T ss_pred HHHHhchHH------HHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHH
Confidence 999999999 99999999998 456 56789999999999999999999999998865 4443 333455556
Q ss_pred HhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCChHHHHHH
Q 038890 183 MACGFVTSARMLFDEMSN--RD-VVSWNAMIIGYLRSGDLDVALDLFRRMKKRN---IFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 183 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
...|++.+|...|.+..+ |. ...|+.|.-.+-..|+...|++-|++..+-| ...|-.|...|-..+.+++|+..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 668999999998888766 43 3579999999999999999999999988643 35788999999999999999999
Q ss_pred HHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 257 FQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
|.+... ..| ....+..+...|...|.++.|+..|++..+.. +.-+..|+.|..++-..|++.+|...|.+..
T Consensus 275 Y~rAl~------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 275 YLRALN------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHh------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 998762 234 46677888888899999999999999998864 4457889999999999999999999999876
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-H
Q 038890 336 K---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-V 410 (569)
Q Consensus 336 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 410 (569)
. ....+.+.|...+...|.++.|..+|....+ +.|. ....+.|...|-+.|++++|+..+++..+ +.|+ .
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHH
Confidence 4 3567788899999999999999999998887 4555 45788888999999999999999999885 3565 5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
..|+.+...|...|+.+.|++.+.+. .+.|.. ...+.|...+...|++.+|++.++.+.++.|+.+.++-.++.++.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 78999999999999999999999988 777754 5888999999999999999999999999999999999999888776
Q ss_pred cCChHH
Q 038890 489 AGRFDD 494 (569)
Q Consensus 489 ~g~~~~ 494 (569)
..+|.+
T Consensus 503 vcdw~D 508 (966)
T KOG4626|consen 503 VCDWTD 508 (966)
T ss_pred Hhcccc
Confidence 666554
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.5e-21 Score=181.67 Aligned_cols=444 Identities=13% Similarity=0.090 Sum_probs=350.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCc-ccHH-HHH-HHHhcCCCCCCCCC
Q 038890 41 MRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDL-YTYN-IMI-RANACKSSETNDTH 117 (569)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~li-~~~~~~~~~~~~~~ 117 (569)
...+-.+.++..+.+.. +. -...|..-.-+. |++++|++.-..+-+.|. .+=+ .++ ..+.+..+++
T Consensus 31 s~~s~~v~qq~~~t~~~-~~----~~l~lah~~yq~--gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d---- 99 (966)
T KOG4626|consen 31 SSGSSSVLQQFNKTHEG-SD----DRLELAHRLYQG--GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLD---- 99 (966)
T ss_pred cccchHHHHHhccCCcc-ch----hHHHHHHHHHhc--cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchh----
Confidence 33344455555544322 12 234445444555 999999988776654322 1111 122 3344444444
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 038890 118 SGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE 197 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 197 (569)
+...--....+. .+--..+|..+.+.+-..|+++.|+.+++.+++..+. ....|..+..++...|+.+.|.+.|-+
T Consensus 100 --~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 100 --KSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred --hhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 333322222221 2235678999999999999999999999999998644 678899999999999999999999998
Q ss_pred cCC--CChhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc
Q 038890 198 MSN--RDVVS-WNAMIIGYLRSGDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP 271 (569)
Q Consensus 198 ~~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p 271 (569)
..+ |+... .+.+...+...|+.++|...|.+..+ |. ...|+.|...+-.+|+...|+..|++.++ +.|
T Consensus 176 alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk------ldP 249 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK------LDP 249 (966)
T ss_pred HHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc------CCC
Confidence 877 44333 33455566678999999999988765 43 45799999999999999999999999873 345
Q ss_pred c-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHH
Q 038890 272 D-KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMIS 347 (569)
Q Consensus 272 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 347 (569)
+ ...|-.+...|...+.++.|...|.++.... +.....+..+...|-..|.+|.|+..|++..+. -+..|+.|..
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 4 5678899999999999999999999887764 445677888888899999999999999998763 3578999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
++-..|++.+|.+.|.+.+.. .|+ ....+.|...+...|.++.|..+|....+.+ +--....+.|...|...|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccH
Confidence 999999999999999999874 444 5688999999999999999999999988543 33357889999999999999
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++|+..|++. .++|+. ..|+.+...|...|+.+.|++.+.+++..+|.-..+++.|+..|-..|++.+|+.-++...+
T Consensus 405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999998 888975 58999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCC
Q 038890 505 RGIRKEVP 512 (569)
Q Consensus 505 ~g~~~~~~ 512 (569)
++||.|
T Consensus 485 --lkPDfp 490 (966)
T KOG4626|consen 485 --LKPDFP 490 (966)
T ss_pred --cCCCCc
Confidence 566654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=6.5e-19 Score=186.02 Aligned_cols=440 Identities=12% Similarity=0.023 Sum_probs=292.5
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccHHHHHHHHhcCCCCCCCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTYNIMIRANACKSSETNDT 116 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~ 116 (569)
|++++|...|++.++..+.. + .++..|...|.+. |+.++|+..+++..+ |+-..|..++..+ +++.
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~---~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~--- 125 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-I---PLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEV--- 125 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccCh---
Confidence 77778888888877764433 4 6777777888887 888888887777664 3222333323222 5555
Q ss_pred ChhHHHHHHHHHHHCCCCCCcc-c---------------------------------------HHHH-HHHHHccCCcHH
Q 038890 117 HSGKCLKLYKQMLCTGISPDCL-T---------------------------------------FPFL-LKECTKRLDGLV 155 (569)
Q Consensus 117 ~~~~A~~~~~~m~~~g~~p~~~-~---------------------------------------~~~l-l~~~~~~~~~~~ 155 (569)
+|..+|+++.... |+.. . .... ...|...++++.
T Consensus 126 ---kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 ---KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred ---hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 7777777776532 3221 1 2222 444556677777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038890 156 GASVYGQVVKFGVCDDVFVQNSVISLFMA-CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--- 231 (569)
Q Consensus 156 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 231 (569)
|+.++..+.+.++. +......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|..+++++..
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777777776643 44445556666666 355 6666666554445777888899999999999999999988731
Q ss_pred --C-----------------------------------------------------------------------------
Q 038890 232 --R----------------------------------------------------------------------------- 232 (569)
Q Consensus 232 --~----------------------------------------------------------------------------- 232 (569)
|
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0
Q ss_pred ----------------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCC---------------------------
Q 038890 233 ----------------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV--------------------------- 269 (569)
Q Consensus 233 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------------------- 269 (569)
+....--+.-...+.|+.++|.++|+...... ..+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 00000000111223444555555555443200 0000
Q ss_pred ----------------------------------Cc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH
Q 038890 270 ----------------------------------KP--DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA 313 (569)
Q Consensus 270 ----------------------------------~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (569)
++ +...+..+..++.. +++++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 11 22233333333333 45555666555555442 34333333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 038890 314 LVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLV 390 (569)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 390 (569)
+...+...|++++|...|+++.. ++...+..+...+...|+.++|...+++..+.. |+. ..+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 44455678888888888887654 334456666777888899999999998888753 333 3333444445566999
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
++|...++...+. .|+...|..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999853 477889999999999999999999999998 5566 5567888888999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 469 IDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 469 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+..|.++.++..++.++...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998644
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-19 Score=187.96 Aligned_cols=392 Identities=11% Similarity=-0.014 Sum_probs=290.5
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
+......+.+.|++. .|+..|++.++ +.|+...|..+..++...|+++.|...++..++..+. +...+..+
T Consensus 130 ~k~~G~~~~~~~~~~------~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFN------KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHH------HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 334556677778888 99999999987 5688888888888899999999999999999987643 66788889
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------
Q 038890 179 ISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGDLDVALDLFRRMKK------------------------ 231 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 231 (569)
..+|...|++++|...|...... +......++..+........+...++.-..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999999998877654321 111111111111111111222222221111
Q ss_pred -----CCh---hHHHHHHHH---HHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 232 -----RNI---FSWNSIITG---FVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 232 -----~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
.+. ..+..+... ....+++++|.+.|+.....+ ...| +...+..+...+...|++++|...+++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000 011111111 122468999999999987321 1233 4566778888889999999999999999
Q ss_pred HHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 300 RRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
.+.. +.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 8764 44466788889999999999999999998754 367889999999999999999999999998853 224567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-F-------VWGA 447 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ 447 (569)
+..+..++.+.|++++|+..|+...+.. +.+...|+.+..++...|++++|+..|++. ...|+. . .++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 7788888999999999999999998544 456788999999999999999999999987 444421 1 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
....+...|++++|.++++++.+.+|.+..++..++.++.+.|++++|.++|++..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22233447999999999999999999999999999999999999999999999987643
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=6.3e-19 Score=186.13 Aligned_cols=468 Identities=11% Similarity=0.002 Sum_probs=336.3
Q ss_pred HHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHH
Q 038890 8 VSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNV 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~ 87 (569)
.|...++...+.+|. ++.....++..+...|+.++|+...+...+..+ +. ...+..+ +.. +++++|..+
T Consensus 62 ~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n--~~~~~~L----a~i--~~~~kA~~~ 130 (987)
T PRK09782 62 TAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GD--ARLERSL----AAI--PVEVKSVTT 130 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--cc--HHHHHHH----HHh--ccChhHHHH
Confidence 566667766666644 478888999999999999999999999988743 33 1333333 333 667888888
Q ss_pred hhcCCC--CC-cccHHHHHHH------------------H-hc----CCC-----------CCCCCChhHHHHHHHHHHH
Q 038890 88 FSHIKR--SD-LYTYNIMIRA------------------N-AC----KSS-----------ETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 88 ~~~~~~--~~-~~~~~~li~~------------------~-~~----~~~-----------~~~~~~~~~A~~~~~~m~~ 130 (569)
++++.. |+ ...+..+... + .+ .|. +..-++++.|++++.++.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 888763 32 2222222221 0 00 001 0012455589999999999
Q ss_pred CCCCCC-cccHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh
Q 038890 131 TGISPD-CLTFPFLLKECTK-RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-----RDV 203 (569)
Q Consensus 131 ~g~~p~-~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~ 203 (569)
.+ |. ..-...+..++.. .++ +.+..+++. .+..+...+..++..|.+.|+.++|.++++++.. |..
T Consensus 211 ~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 211 QN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred cC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 75 43 3345566667776 466 777777553 3345788899999999999999999999998864 222
Q ss_pred hHHHHH------------------------------HHHHHh--------------------------------------
Q 038890 204 VSWNAM------------------------------IIGYLR-------------------------------------- 215 (569)
Q Consensus 204 ~~~~~l------------------------------~~~~~~-------------------------------------- 215 (569)
.+|... +..+.+
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222111 111111
Q ss_pred -------------------------cCCHHHHHHHHHhcCC---------------------------------------
Q 038890 216 -------------------------SGDLDVALDLFRRMKK--------------------------------------- 231 (569)
Q Consensus 216 -------------------------~g~~~~A~~~~~~~~~--------------------------------------- 231 (569)
.|+.++|.++|+....
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 5666666666655421
Q ss_pred -----------------------------C--ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 232 -----------------------------R--NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 232 -----------------------------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
+ +...|..+..++.. ++.++|...+.+... ..|+......+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~------~~Pd~~~~L~lA 516 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ------RQPDAWQHRAVA 516 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH------hCCchHHHHHHH
Confidence 0 22234444555544 677778887777652 236655544455
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChhH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTA---MISVFALNGYGKE 357 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~ 357 (569)
..+...|++++|...++++... +|+...+..+..++.+.|++++|...|+...+.++..... +.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 5567899999999999987654 4555556677888999999999999999887654333333 3333445599999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
|+..+++..+. .|+...+..+..++.+.|++++|...++...... +.+...+..+..++...|++++|++.+++.
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999874 5678889999999999999999999999999654 556788899999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 437 PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 437 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...| +...+..+..++...|++++|+..++++.+..|++..+....++...+..+++.|.+-+++-...+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5556 567899999999999999999999999999999999999999999999999999999888765543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.5e-20 Score=180.40 Aligned_cols=297 Identities=15% Similarity=0.068 Sum_probs=191.4
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHhCCCh
Q 038890 181 LFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR-N------IFSWNSIITGFVQGGRA 250 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g~~ 250 (569)
.+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666665544 2 2234444555555555555555555544421 1 12344444555555555
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHH
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
++|..+|+++. .. .+++..++..++..+...|++++|...++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------- 178 (389)
T PRK11788 124 DRAEELFLQLV----DE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------- 178 (389)
T ss_pred HHHHHHHHHHH----cC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------
Confidence 55555555543 11 123334444444444444444444444444443321110000
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH
Q 038890 331 FKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV 410 (569)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 410 (569)
....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++++.... -....
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHH
Confidence 01134456667778889999999999888753 2235577778888999999999999999988532 11124
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH-
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK- 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 488 (569)
.+++.++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++.+..|++. .+..++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhc
Confidence 56788999999999999999999998 5577777778889999999999999999999999988876 45555555553
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 489 --AGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 489 --~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.|+.+++..++++|.+.++.|+ |.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~-p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRK-PR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCC-CC
Confidence 5699999999999999999888 64
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.4e-17 Score=175.92 Aligned_cols=195 Identities=10% Similarity=-0.058 Sum_probs=131.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHc
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLD-CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALN 352 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 352 (569)
..+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++...+ ......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667888888888887776522 221 22234667788888888888887765422 12345556677788
Q ss_pred CChhHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGV-----------RPNH---VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
|++++|..+++.+..... .|+. ..+..+...+...|+.++|+..++++.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 888888888888776421 1231 234455566777788888888888877543 556677777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 888888888888888877 55564 4556666667777888888888888888888887643
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=9e-17 Score=166.49 Aligned_cols=439 Identities=12% Similarity=-0.007 Sum_probs=329.3
Q ss_pred CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHH
Q 038890 21 PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYN 100 (569)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 100 (569)
.|..+.+....+-+..+.|++..|...++++++..+...+ .++ .++..+... |+.++|+..+++...|+...+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~---av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG---QVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh---hHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHH
Confidence 3445566677777778889999999999999998655444 455 888999999 9999999999999877554443
Q ss_pred -HH--HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH
Q 038890 101 -IM--IRANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN 176 (569)
Q Consensus 101 -~l--i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 176 (569)
.+ ...+...|++. +|+++|+++.+.. |+ +..+..++..+...++.++|+..++.+.+.. |+...+.
T Consensus 104 ~llalA~ly~~~gdyd------~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l 173 (822)
T PRK14574 104 GLASAARAYRNEKRWD------QALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYM 173 (822)
T ss_pred HHHHHHHHHHHcCCHH------HHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHH
Confidence 33 34667779999 9999999999954 54 4566667777889999999999999998864 4455554
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhH--------HHHHHHHH
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR-NIFS--------WNSIITGF 244 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~l~~~~ 244 (569)
.++..+...++..+|++.++++.+ | +...+..+...+.+.|-...|+++..+-+.- +... ...+++.-
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 444445446667669999999977 4 5667788899999999999999998876631 1111 11111110
Q ss_pred -----HhCCCh---HHHHHHHHHchhccccCCCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 245 -----VQGGRA---REALELFQEMQSSSVEEMVKPDKI----TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 245 -----~~~g~~---~~a~~~~~~m~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
....++ +.|+.-++.+... ....++... ...-.+.++...+++.++...|+.+...+.+....+..
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~--~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTR--WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhh--ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 012233 4455555555421 111232222 22344567788999999999999999988765667888
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPKK---------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGV-----------RP 372 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p 372 (569)
.+.++|...+++++|..+|+.+... +......|..++...+++++|..+++++.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 9999999999999999999988542 223356788999999999999999999987321 12
Q ss_pred C--HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038890 373 N--HV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGA 447 (569)
Q Consensus 373 ~--~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 447 (569)
+ -. .+..++..+...|+..+|++.++.+.... |-|......+.+.+...|.+.+|++.++.. ...|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 2 22 34455677889999999999999998544 678899999999999999999999999877 55664 567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
.+.++...+++++|..+.+.+.+..|+++.+-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88888999999999999999999999988543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.3e-17 Score=172.40 Aligned_cols=330 Identities=12% Similarity=0.000 Sum_probs=261.4
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIG 212 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 212 (569)
+......++..+.+.|+++.|..+++..+...+. +...+..++.+....|++++|...|+++.. | +...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344556677788999999999999999888755 444555566777789999999999999876 3 45678888899
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCH
Q 038890 213 YLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAI 289 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 289 (569)
+...|++++|...|++..+ | +...+..+...+...|++++|...++.+.. .. +.+...+..+ ..+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~----~~-P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ----EV-PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hC-CCCHHHHHHH-HHHHHcCCH
Confidence 9999999999999999875 3 456788889999999999999999998752 11 2223333333 347788999
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhH----HHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKE----AFDTF 362 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~ 362 (569)
++|...++.+.+....++......+..++...|++++|...|+.... .+...+..+...+...|++++ |+..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999987765334445555667888899999999999998764 356778888999999999985 89999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038890 363 REMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD 441 (569)
Q Consensus 363 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 441 (569)
++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+..++.+.|++++|+..|+++ ...|+
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9988752 2245688888899999999999999999998643 445677888899999999999999999988 55666
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 442 VFV-WGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 442 ~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
... +..+..++...|+.++|...|+++.+..|.+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 543 4445677889999999999999999988774
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.1e-18 Score=168.93 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=215.1
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CC------hhHHHHHHHHHHhc
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RD------VVSWNAMIIGYLRS 216 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~ 216 (569)
...+...|+++.|...|.++.+.++ .+..++..+...+...|++++|..+++.+.. ++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4445678999999999999999864 3667889999999999999999999998876 22 24678889999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCH
Q 038890 217 GDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAI 289 (569)
Q Consensus 217 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~ 289 (569)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+ .+..+. ...+..+...+...|++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999975 4567899999999999999999999999973 222221 11233444555566666
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
++|...++++.+.. +. +...+..+...+...|++++|+++|+++.+.+
T Consensus 197 ~~A~~~~~~al~~~-p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 197 DAARALLKKALAAD-PQ-------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHHHhHC-cC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 66666666655432 11 22344556666777777777777777777643
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGAL 448 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 448 (569)
......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..+
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 2222356677788888888888888888888743 366666788888888999999999988877 667888888887
Q ss_pred HHHHHh---cCCHHHHHHHHHHHhh
Q 038890 449 LGGCQM---HGNVELGEKVAQYLID 470 (569)
Q Consensus 449 ~~~~~~---~~~~~~a~~~~~~~~~ 470 (569)
+..+.. .|+.+++...++++.+
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHH
Confidence 777654 4578888888888776
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=5.9e-17 Score=171.24 Aligned_cols=387 Identities=9% Similarity=-0.014 Sum_probs=283.1
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
+......|+.. +|+++|.+..... +.+...+..+..++...|++++|..+++..++..+. +...+..+..++
T Consensus 22 ~~ia~~~g~~~------~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 22 LQIALWAGQDA------EVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHcCCHH------HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34456677777 8888888887521 233445777778888888899998888888887533 556667788888
Q ss_pred HhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHH
Q 038890 183 MACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 183 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
...|++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+ | +...+..+..++...|..++|+..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 888999999888888765 3 445 77788888888999999988888774 3 344566677788888888889888
Q ss_pred HHHchhccccCCCCccH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHHHh-CCCCcch-hH----HHHHH
Q 038890 257 FQEMQSSSVEEMVKPDK------ITIASVLSACA-----YLGAI---DHGKWVHGYLRRS-GLDCDVV-IG----TALVD 316 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~ 316 (569)
++... . .|+. .....+++... ..+++ ++|...++.+.+. ...|+.. .+ ...+.
T Consensus 173 l~~~~----~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 173 IDDAN----L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHhCC----C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 88765 2 2221 11122222222 12234 6778888888754 1222221 11 11133
Q ss_pred HHHhcCChHHHHHHHhhCCCCC---h-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCC
Q 038890 317 MYGKCGCVERAYGVFKEMPKKD---T-LAWTAMISVFALNGYGKEAFDTFREMEAEGVRP---NHVTFVGLLSACAHSGL 389 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~ 389 (569)
++...|++++|...|+.+.+.+ + .....+...+...|++++|+..|+++.+..... .......+..++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4567799999999999998642 1 122335778999999999999999987643211 12455666778899999
Q ss_pred HHHHHHHHHHhHHhcC----------CCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 390 VEKGRWCFVMMRHVYL----------VEPH---VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999885431 0122 235567888899999999999999998 4444 66788899999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.|++++|++.++++.+..|++..++..++..+.+.|++++|..+++++.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999764
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.2e-17 Score=170.82 Aligned_cols=343 Identities=12% Similarity=0.021 Sum_probs=268.7
Q ss_pred CChhHHHHHhhcCCC------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccC
Q 038890 79 GSLSYATNVFSHIKR------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRL 151 (569)
Q Consensus 79 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 151 (569)
.+++.---.|...++ .+....-.++..+.+.|++. .|+.+++...... |+ ...+..++.+....|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETD------VGLTLLSDRVLTA--KNGRDLLRRWVISPLASS 90 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcc------hhHHHhHHHHHhC--CCchhHHHHHhhhHhhcC
Confidence 455555555555442 13344556677888999999 9999999998853 43 445555666677899
Q ss_pred CcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038890 152 DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRR 228 (569)
Q Consensus 152 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (569)
+++.|...++.+.+..+. +...+..+..++...|++++|...+++..+ | +...+..+...+...|++++|...++.
T Consensus 91 ~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 999999999999998644 677888889999999999999999999876 3 566888899999999999999999987
Q ss_pred cCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 038890 229 MKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 229 ~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (569)
+.. |+ ...+..+ ..+...|++++|...++.+. .....++......+..++...|++++|...++.+.... +
T Consensus 170 ~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l----~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 170 QAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL----PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH----hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 742 33 3334333 34788999999999999987 33223444555566778889999999999999998875 5
Q ss_pred CcchhHHHHHHHHHhcCChHH----HHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVER----AYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTF 377 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 377 (569)
.+...+..+...|...|++++ |...|++... .+...+..+...+...|++++|+..+++..+. .|+ ...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 567788889999999999986 7888888764 35678889999999999999999999999885 344 4567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPD 441 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 441 (569)
..+..++...|++++|...++.+.... |+. ..+..+..++...|++++|+..|++. ...|+
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 778889999999999999999988543 443 34455677889999999999999988 44443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.5e-16 Score=165.30 Aligned_cols=251 Identities=13% Similarity=-0.002 Sum_probs=203.6
Q ss_pred cCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCC
Q 038890 216 SGDLDVALDLFRRMKKR------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGA 288 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 288 (569)
.+++++|...|+...+. ....|+.+...+...|++++|+..|++... ..| +...|..+..++...|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE------LDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCC
Confidence 47899999999987642 345688888899999999999999999873 234 46678888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +...+..+...+.+.|++++|+..|++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998875 566788999999999999999999999988653 5667888889999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-H-------hHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-V-------YHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
.+.. +.+...+..+..++...|++++|...|+...... |+ . ..++.....+...|++++|.+++++.
T Consensus 460 l~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 460 KKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE---KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8742 3346788888999999999999999999987532 22 1 11222233344579999999999987
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 437 PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 437 ~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|+ ...+..+...+.+.|++++|...|+++.++.+....
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 55564 457888999999999999999999999998776443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.1e-15 Score=158.63 Aligned_cols=425 Identities=10% Similarity=-0.003 Sum_probs=312.2
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcc---cHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLY---TYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 140 (569)
.....-+-...+. |+++.|+..|++..+.++. .-..++..+...|+.. +|+..+++.. .|+...+
T Consensus 35 ~~~y~~aii~~r~--Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~------~A~~~~eka~----~p~n~~~ 102 (822)
T PRK14574 35 DTQYDSLIIRARA--GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ------EVIDVYERYQ----SSMNISS 102 (822)
T ss_pred hHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH------HHHHHHHHhc----cCCCCCH
Confidence 3334444445566 9999999999998853332 2337788888889999 9999999998 3544444
Q ss_pred HHH---HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh
Q 038890 141 PFL---LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR 215 (569)
Q Consensus 141 ~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~ 215 (569)
..+ ...+...|+++.|.++|+.+++..+. +...+..++..+...++.++|++.++++.. |+...+..++..+..
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh
Confidence 433 34677789999999999999998765 567777889999999999999999999988 444444334334444
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHH------HHHHHHHH---
Q 038890 216 SGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKIT------IASVLSAC--- 283 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~------~~~ll~~~--- 283 (569)
.++..+|+..++++.+ | +...+..+..++.+.|-...|+++..+-. .-+.+...- ....++.-
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-----~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP-----NLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-----cccCHHHHHHHHHHHHHHHHhhcccc
Confidence 5666669999999875 4 45677888899999999999998888742 111222111 11111111
Q ss_pred --HccCCH---HHHHHHHHHHHHh-C-CCCcchh----HHHHHHHHHhcCChHHHHHHHhhCCCC----ChhHHHHHHHH
Q 038890 284 --AYLGAI---DHGKWVHGYLRRS-G-LDCDVVI----GTALVDMYGKCGCVERAYGVFKEMPKK----DTLAWTAMISV 348 (569)
Q Consensus 284 --~~~~~~---~~a~~~~~~~~~~-~-~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~ 348 (569)
....++ +.|..-++.+... + .|+.... ..-.+-++...|++.++++.|+.+... ...+-..+..+
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 011223 3444444444442 1 1222222 223456778889999999999999853 34556678899
Q ss_pred HHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC----------CCCH---
Q 038890 349 FALNGYGKEAFDTFREMEAEG-----VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV----------EPHV--- 410 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~--- 410 (569)
|...+++++|+.+|..+.... ..++......|.-++...+++++|..+++.+.+.... .|+.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999987643 1223444578889999999999999999999852210 1221
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
..+..++..+...|++.+|++.++++ ...| |......+...+...|.+.+|++.++.+...+|.+..+....+.++..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 34456778889999999999999999 4445 888999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCC
Q 038890 489 AGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (569)
.|+|.+|..+.+.+....
T Consensus 497 l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 497 LQEWHQMELLTDDVISRS 514 (822)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999998886643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.8e-17 Score=161.19 Aligned_cols=485 Identities=13% Similarity=0.057 Sum_probs=282.7
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.|...+.+.++.+ |+|.+...--+.+....+++..|..+|...+...+.-.+ .+.-.+...+.++ |+.+.|+.
T Consensus 147 ~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a---D~rIgig~Cf~kl--~~~~~a~~ 220 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA---DVRIGIGHCFWKL--GMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC---CccchhhhHHHhc--cchhhHHH
Confidence 34444444443443 556666666666666778888888888886665443333 2333334455566 77777666
Q ss_pred HhhcCCC----------------------------------------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHH
Q 038890 87 VFSHIKR----------------------------------------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYK 126 (569)
Q Consensus 87 ~~~~~~~----------------------------------------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~ 126 (569)
.|....+ .|+..-+.|..-|...|++. .+..+.+
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~------~v~~la~ 294 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE------RVWHLAE 294 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH------HHHHHHH
Confidence 6665542 24455555555555566666 6666666
Q ss_pred HHHHCCCC--CCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-
Q 038890 127 QMLCTGIS--PDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R- 201 (569)
Q Consensus 127 ~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~- 201 (569)
.+...... .-..+|-.+.+++-..|+++.|..+|.+..+....-....+-.|...|.+.|+++.+...|+.+.+ |
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 66553210 122345556666666777777777776666654332234444566677777777777777776654 2
Q ss_pred ChhHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH
Q 038890 202 DVVSWNAMIIGYLRSG----DLDVALDLFRRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI 274 (569)
Q Consensus 202 ~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~ 274 (569)
+..+.-.+...|...+ ..+.|..++.+..++ |...|-.+...+....-+ .++.+|......-...+.++.+.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHH
Confidence 2334444444444442 334455555444432 333444444444333322 22444433221000223335556
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCcc------hhHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRS---GLDCDV------VIGTALVDMYGKCGCVERAYGVFKEMPK--------- 336 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 336 (569)
..+.+...+...|++..|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 6666666666667777776666665543 111222 1222233344444455555555554432
Q ss_pred ----------------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc-
Q 038890 337 ----------------------------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAH- 386 (569)
Q Consensus 337 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~- 386 (569)
.++..++.+...+.....+..|..-|+...+.- ..+|..+...|...|..
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 234444444445555555555555444443321 12344454555554432
Q ss_pred -----------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 038890 387 -----------SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 387 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 453 (569)
.+..++|+++|.++.+.+ +.|...-|.+.-+++..|++.+|..+|... .......+|..+..+|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 134677888888887544 567777788888899999999999999888 22335567888999999
Q ss_pred hcCCHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 454 MHGNVELGEKVAQYLIDLD--PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|++..|++.|+...+.. .+++.+...|++++.+.|++.+|.+.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999887743 4477889999999999999999999888876644
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=5.8e-16 Score=153.66 Aligned_cols=475 Identities=12% Similarity=0.056 Sum_probs=342.7
Q ss_pred hhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhh
Q 038890 10 YSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFS 89 (569)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 89 (569)
..+++..-+.+ +.||...+.+++-+...|++..+..+............. ....|..+.++|-.. |+++.|...|.
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-~aes~Y~~gRs~Ha~--Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI-KAESFYQLGRSYHAQ--GDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhh--ccHHHHHHHHH
Confidence 33444332333 567888888999999999999999998888876421111 113477888888888 99999999998
Q ss_pred cCCCC---C-cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHccC----CcHHHHHHH
Q 038890 90 HIKRS---D-LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC-LTFPFLLKECTKRL----DGLVGASVY 160 (569)
Q Consensus 90 ~~~~~---~-~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~----~~~~a~~~~ 160 (569)
+..+. + +..+--+.+.+...|++. .+...|+...+. .||. .|...|...|+..+ ..+.|..++
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle------~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLE------ESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHH------HHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 77642 2 445566778889999998 999999999884 3654 45555555565554 345566666
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038890 161 GQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS--------NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 161 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 231 (569)
....+.- ..|...|-.+...+.. ++...++.+|.... ..-+...|.+...+...|+++.|...|.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 6665554 3366677766666643 44333355554432 25667888888899999999999999887653
Q ss_pred ------CCh------hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 038890 232 ------RNI------FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-TIASVLSACAYLGAIDHGKWVHGY 298 (569)
Q Consensus 232 ------~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 298 (569)
++. .+-..+...+-..++++.|.+.|..+.+. -|.-. .|.-++......++..+|...++.
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 122 12334666777788999999999998732 24433 333333333455778888888888
Q ss_pred HHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHH------------cCChhHHHHH
Q 038890 299 LRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFAL------------NGYGKEAFDT 361 (569)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~g~~~~A~~~ 361 (569)
+...+ ..++..+..+...|.+..++..|.+-|..+.+ +|+.+.-.|...|.. .+..++|+++
T Consensus 556 ~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 88764 66677778788899999999888886665543 355555555554432 2456789999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----P 437 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 437 (569)
|.+.+... +-|...-+.+.-+++..|++..|..+|....+.. .....+|-.+.++|...|++..|+++|+.. .
T Consensus 635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988753 3366777778888899999999999999999644 245678899999999999999999999987 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH-------------------cCChHHHHHH
Q 038890 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK-------------------AGRFDDVKKT 498 (569)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~ 498 (569)
-+.+..+...|..++.+.|.+.+|.+.+..+....|.++.+...++.+..+ .+..+.|.++
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999998877666655432 3457888899
Q ss_pred HHHHHHCCCC
Q 038890 499 RNLMKERGIR 508 (569)
Q Consensus 499 ~~~m~~~g~~ 508 (569)
|..|...+-+
T Consensus 792 F~~ls~~~d~ 801 (1018)
T KOG2002|consen 792 FTELSKNGDK 801 (1018)
T ss_pred HHHHHhcCCC
Confidence 9999877655
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=5.4e-16 Score=141.00 Aligned_cols=441 Identities=10% Similarity=0.094 Sum_probs=313.9
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--C------CcccHHH
Q 038890 30 ILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--S------DLYTYNI 101 (569)
Q Consensus 30 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~ 101 (569)
.+++.+.......+|+..|+.+++...-|+.. .+-..+...+.+. .++..|.+.++-... | .+...|.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag--~lkmnigni~~kk--r~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAG--ILKMNIGNIHFKK--REFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCc--eeeeeecceeeeh--hhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34455555567889999999999988766653 4555667788888 889999998876542 2 2345566
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh--------
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF-------- 173 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------- 173 (569)
+.-.+.+.|.+. .|+..|+...+. .||-.+-..|+-++...|+.++..+.|..|+.....||..
T Consensus 282 igvtfiq~gqy~------dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 282 IGVTFIQAGQYD------DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred cCeeEEecccch------hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 667788999999 999999999884 4888776667766677899999999999998864333221
Q ss_pred HHHHHHHHHHhcCC-----------HHHHHHHHhhcCC----CChhH---H------------------HHHHHHHHhcC
Q 038890 174 VQNSVISLFMACGF-----------VTSARMLFDEMSN----RDVVS---W------------------NAMIIGYLRSG 217 (569)
Q Consensus 174 ~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~----~~~~~---~------------------~~l~~~~~~~g 217 (569)
.-..|+.--.+... .+++.-.--++.. ||-.. | -.-...+.+.|
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 11122222222211 1222221112221 22110 1 01123467799
Q ss_pred CHHHHHHHHHhcCCCChhHH----HHHHH-HHHh-CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSW----NSIIT-GFVQ-GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH 291 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~----~~l~~-~~~~-~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 291 (569)
+++.|++++.-..+.|..+- +.|.- -|.+ -.++..|.+.-+..+. .-.-+......-.......|++++
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln-----~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN-----IDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc-----ccccCHHHhhcCCceeeecCcHHH
Confidence 99999999988876654432 22222 2233 3457777776666542 112334444433444556899999
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP---KKDTLAWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
|...|++.....-......|+ +.-.+...|++++|++.|-++. ..+..+...+...|-...+...|++++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 999999998765444444454 3445778899999999997765 367778888889999999999999999876653
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038890 369 GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGA 447 (569)
Q Consensus 369 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 447 (569)
++.|...+..|...|-+.|+-.+|.+.+-+-.+- ++-+..+...|...|....-+++|+.+|++. -+.|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4556778899999999999999999887665533 3678888888999999999999999999999 77899999999
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 448 LLGGCQ-MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 448 l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
++..|. +.|++++|.++++...+..|.+...+..|++.+...|-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 887764 68999999999999999999999999999988877763
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.3e-14 Score=131.23 Aligned_cols=421 Identities=14% Similarity=0.111 Sum_probs=247.2
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH-H--------------
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT-N-------------- 86 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~-~-------------- 86 (569)
|....+-+.++.+. .+|.+.++--+|+.+...|.+.++ .+...|++.-+-.-+.++.-|+ +
T Consensus 113 ~~~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~---kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 113 PLQVETENNLLKMI-SSREVKDSCILYERMRSENVDVSE---KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred chhhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCH---HHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 34455667777766 567788888899999998888888 6666665543322001121111 1
Q ss_pred ---------HhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHH
Q 038890 87 ---------VFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGA 157 (569)
Q Consensus 87 ---------~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 157 (569)
++-+...++..+|..||.++++-...+ +|.++|++......+.+..+|+.+|.+-.-..+ .
T Consensus 189 sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~E------RA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 189 SWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLE------RARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred ccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHH------HHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 222223356677888888888887777 888888888777677788888888876443222 6
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH----HHhhcCC----CChhHHHHHHHHHHhcCCHHH-HHHHHHh
Q 038890 158 SVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARM----LFDEMSN----RDVVSWNAMIIGYLRSGDLDV-ALDLFRR 228 (569)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 228 (569)
++..+|....+.||..++|+++.+..+.|+++.|.. ++.+|.+ |...+|..+|..+++.++..+ |..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 778888888888888888888888888887766544 3444433 677777777777777766644 3333333
Q ss_pred cCC------------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCC-CCcc---HHHHHHHHHHHHccCCHHHH
Q 038890 229 MKK------------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPD---KITIASVLSACAYLGAIDHG 292 (569)
Q Consensus 229 ~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a 292 (569)
+.. .+...|...|..|.+..+.+-|.++-.-... |.... +.|+ ..-|..+....+.....+..
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1333455666666666666666655544421 10111 2222 12234444555555566666
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
...|+.|.-.-+-|+..+...++++..-.|+++-..+++..+..-+ ..-+-+--++++..|......|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCC
Confidence 6666666555555666666666666666666665555554433211 0111112223333343333334
Q ss_pred CHH---HHHHHHHHHHccCCHHHH-HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC
Q 038890 373 NHV---TFVGLLSACAHSGLVEKG-RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD 441 (569)
Q Consensus 373 ~~~---~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~ 441 (569)
+.. -+.....-|. . ++.++ ...-.++. . ........+.+...+.|.|+.++|.+++.-. +..|.
T Consensus 486 ~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r-~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCA-A-DIKEAYESQPIRQR-A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHH-h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 322 2222221111 0 11111 11122222 2 2455667778888899999999999988766 33455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
......++....+.++..+|...++-+...+-+
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 555556777778888999999999998776644
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.3e-12 Score=124.63 Aligned_cols=443 Identities=12% Similarity=0.077 Sum_probs=264.5
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC--------CCCcccHHHHHHHHhcCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK--------RSDLYTYNIMIRANACKS 110 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~ 110 (569)
..++.|..++....+. ++.++ .++......--.. |+.+...++.++-. .-+...|-.=...|-..|
T Consensus 420 etYenAkkvLNkaRe~-iptd~---~IWitaa~LEE~n--gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDR---EIWITAAKLEEAN--GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCCh---hHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 3344444444444432 33333 4444444444444 55544444444322 012233333333344444
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISP--DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV 188 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 188 (569)
... .+..+....+.-|+.- -..|+..-...|.+.+.++-|..+|...++.-+. +..+|......--..|..
T Consensus 494 sv~------TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 494 SVI------TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred Chh------hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcH
Confidence 444 4444444444444332 1224444445555555555555555555554322 344454444444445555
Q ss_pred HHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchh
Q 038890 189 TSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQS 262 (569)
Q Consensus 189 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 262 (569)
++...+|++... | ....|......+...||+..|..++.+.-+ | +...|-.-+.......+++.|..+|.+..
T Consensus 567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar- 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR- 645 (913)
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-
Confidence 555555555544 2 333455555555566666666666666543 2 33456566666666667777777776654
Q ss_pred ccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch
Q 038890 263 SSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DT 339 (569)
Q Consensus 263 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 339 (569)
+..|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+...+-+.++.+.|.+.|..=.+. .+
T Consensus 646 -----~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 646 -----SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred -----ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 23455555555555555566667777777666654 2334455666666666667777777666654432 34
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..|-.+...--+.|..-.|..+|++..-.+. -+...|...|+.-.+.|+.+.|..+..+....+ +.+...|..-|..
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~l 796 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWL 796 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHh
Confidence 5566666666666677777777776665432 255666666777777777777777766666443 4555666666666
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..+.++-.+..+.+++. +.|+.....+...+.....++.|.+.|.+++..+|++..+|..+-..+.+.|.-++-.+++
T Consensus 797 e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666666666665 3466777778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 038890 500 NLMKERG 506 (569)
Q Consensus 500 ~~m~~~g 506 (569)
.+.....
T Consensus 875 ~~c~~~E 881 (913)
T KOG0495|consen 875 KKCETAE 881 (913)
T ss_pred HHHhccC
Confidence 8876643
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=7e-13 Score=121.77 Aligned_cols=479 Identities=12% Similarity=0.076 Sum_probs=353.1
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCh
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL 81 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 81 (569)
|++-...|.+++...+..+ ..+.+....++.+-.++..+..|+.+++..+..-+..+ .++...+.+--.. |++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----qlWyKY~ymEE~L--gNi 157 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----QLWYKYIYMEEML--GNI 157 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----HHHHHHHHHHHHh--ccc
Confidence 3445567888888776666 55777888899999999999999999999998743333 4667777777778 999
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHH
Q 038890 82 SYATNVFSHIK--RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASV 159 (569)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 159 (569)
..|.++|+.=. +|+...|++.|..-.+....+ .|..+|++.+- +.|+..+|......--+.|....|..+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeie------raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIE------RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHH------HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999998755 799999999999999999999 99999999987 669999999999988899999999999
Q ss_pred HHHHHHh-CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHhcCCHHHHHHHH------
Q 038890 160 YGQVVKF-GV-CDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R---DVVSWNAMIIGYLRSGDLDVALDLF------ 226 (569)
Q Consensus 160 ~~~~~~~-g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~------ 226 (569)
|...++. |- ..+...+.+....-.++..++.|.-+|+-... | ....|..+...--+-|+.....+..
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9998874 31 11334556666666677888899888876654 2 2445666666555667766555543
Q ss_pred --HhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-------HHHHHHHHH---HccCCHHH
Q 038890 227 --RRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-------TIASVLSAC---AYLGAIDH 291 (569)
Q Consensus 227 --~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~ 291 (569)
+.+.+. |-.+|-..++.--..|+.+...++|+... .+++|-.. .|.-+=-++ ....+.+.
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-----anvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-----ANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 45677778888888899999999999996 34555321 121111111 35678999
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHH----HhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMY----GKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+.++++...+. +|....|+..+--.| .++.++..|.+++..... |..-+|..-|..-.+.++++.+..++++.
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999884 566677776554444 477899999999988764 56677888888888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV 444 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 444 (569)
++.+. -+..+|......-...|+.+.|..+|+-......+......|...|+.=...|.+++|..++++. ...+...+
T Consensus 464 le~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 98643 25678888888788899999999999999865544445677888888888999999999999998 44555557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHhh----cCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 445 WGALLGGCQ-----MHG-----------NVELGEKVAQYLID----LDPLNH--AFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 445 ~~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|.++..--. +.+ ++..|..+|+++.. .+|... ..+....+.=...|...+...+-..|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 766655432 334 66788999998875 333321 22233333334456555555555555
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=4.6e-12 Score=125.62 Aligned_cols=458 Identities=12% Similarity=0.024 Sum_probs=264.8
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcC---CCCCcccHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHI---KRSDLYTYNIMI 103 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 103 (569)
.....++.+...|++++|..++.++++..+.. + ..|..|...|-.. |+.+++...+-.. ...|...|..+.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-~---~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRN-P---IAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-h---hhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34456677777899999999999999985433 3 6899999999999 9999998776543 345678888888
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH----HHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN----SVI 179 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~ 179 (569)
....+.|++. +|.-+|.+.++.. +++...+---...|-+.|+...|...|.++....++.|..-+. ..+
T Consensus 215 dls~~~~~i~------qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 215 DLSEQLGNIN------QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHhcccHH------HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 8888888888 9999999999853 2343344445566778899999999999998876543433222 345
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------
Q 038890 180 SLFMACGFVTSARMLFDEMSN-----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----------------------- 231 (569)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 231 (569)
..+...++-+.|.+.++.... -+...++.++..+.+...++.|......+..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 567777777888888777654 3445677788888887777777766554421
Q ss_pred ---CChhHHH----HHHHHHHhCCChHHHHHHHHHchhccccCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 038890 232 ---RNIFSWN----SIITGFVQGGRAREALELFQEMQSSSVEEM--VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS 302 (569)
Q Consensus 232 ---~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 302 (569)
++..+|. .++-++.+....+....+..... ... +.-+...|.-+..++...|++..|..++..+...
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~----~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV----EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH----HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0000010 11112222222222222222222 222 2223444555555555555555555555555554
Q ss_pred CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCC
Q 038890 303 GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEA--------EGVR 371 (569)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~ 371 (569)
....+..+|-.+..+|...|.++.|.+.|+.+... +...-..|...+.+.|+.++|.++++.+.. .+..
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 33334445555555555555555555555555432 222233334445555555555555555321 1122
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhH--------------------------------------------------
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMR-------------------------------------------------- 401 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------------------------------------------------- 401 (569)
|+..........+.+.|+.++-..+-..+.
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 222222222222233333222111111000
Q ss_pred ------------HhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHHhcCCHH
Q 038890 402 ------------HVYLVEPHV--YHYACMIDILSRAGLFSEAERLIRSM-P----MEPDV---FVWGALLGGCQMHGNVE 459 (569)
Q Consensus 402 ------------~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~l~~~~~~~~~~~ 459 (569)
...++..+. ..+.-++.++++.+++++|+.+...+ . ..++. ..-...+.++...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 011111111 23456777888999999999988877 1 12222 12234455667889999
Q ss_pred HHHHHHHHHhhc-----CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 460 LGEKVAQYLIDL-----DPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 460 ~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.|...++-++.. +|.-...|+.......+.|+-.--.+++..
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 555556666555555555553333333333
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1e-11 Score=118.62 Aligned_cols=462 Identities=10% Similarity=0.013 Sum_probs=315.9
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.++.+|++..+.+ |.||+..-.-+.+-...|++..|+.+...-.+.- +.+. .++...++. ...+.|..
T Consensus 268 kKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSe---DvWLeaiRL------hp~d~aK~ 336 (913)
T KOG0495|consen 268 KKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSE---DVWLEAIRL------HPPDVAKT 336 (913)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchH---HHHHHHHhc------CChHHHHH
Confidence 45677777774444 6788888888888888888888887776665542 2222 455444443 44455555
Q ss_pred HhhcCCCC----------------------------------CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCC
Q 038890 87 VFSHIKRS----------------------------------DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 87 ~~~~~~~~----------------------------------~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g 132 (569)
+.....+. ++..|...+. ..+.. .|.-++.+..+-
T Consensus 337 vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~------darilL~rAvec- 405 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPE------DARILLERAVEC- 405 (913)
T ss_pred HHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChH------HHHHHHHHHHHh-
Confidence 54443321 2222222221 11122 344444444431
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChh
Q 038890 133 ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--------RDVV 204 (569)
Q Consensus 133 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~ 204 (569)
-|. -.-|.-++++..-++.|..+++...+. ++.+..+|.+....--.+|+.+...+++++-.. -+..
T Consensus 406 -cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 -CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred -ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 121 112233444555566666666666554 333555665555555566666666666554322 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIAS 278 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ 278 (569)
.|..=...|-+.|..-.+..+...... .--.+|..-...|.+.+.++-|..+|...++ -++-+...|..
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq-----vfp~k~slWlr 555 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ-----VFPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-----hccchhHHHHH
Confidence 455555555555555555555554432 1234677777788888888888888888752 23445566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh
Q 038890 279 VLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYG 355 (569)
Q Consensus 279 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 355 (569)
....--..|..+....+++++...- +-....+-.....+-..|+...|+.++..+-+ .+...|...+.....+.++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~ 634 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDEL 634 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH
Confidence 6666667788888899999888763 45556667777788888999999999887754 3567888888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 356 KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 356 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+.|..+|.+... ..|+...|..-+......++.++|.+++++..+.+ +.-...|..+...+-+.++.+.|.+.|..
T Consensus 635 eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 635 ERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 999999998776 46777777777777777899999999999998765 34457888899999999999999999887
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 436 M-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 436 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
- ..-| ....|..|...--+.|.+-+|..++++.+-.+|.+...|...+++-.+.|+.+.|..+..+..+.
T Consensus 711 G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 711 GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 3334 55678888888888999999999999999999999999999999999999999999988887664
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.3e-13 Score=122.34 Aligned_cols=402 Identities=14% Similarity=0.069 Sum_probs=276.9
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcC--hHHHH-HHHHHHH-------------------hcCCCCC
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKN--MRELK-EIHTQII-------------------KSPCLQT 59 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~a~-~~~~~~~-------------------~~~~~~~ 59 (569)
|++.-+++--++..|..++.|-++.....++.+....++ +.-++ +-|-.+. -.-.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 455557777788899999999888888888887765543 11111 1111111 1112234
Q ss_pred CchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC----CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC
Q 038890 60 NDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR----SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP 135 (569)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 135 (569)
+ ..+..+|...|+. ...+.|.+++++... -+..++|.+|.+-+ +. ..-+++.+|....+.|
T Consensus 207 ~---et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~------~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 207 D---ETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS------VGKKLVAEMISQKMTP 271 (625)
T ss_pred c---hhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh------ccHHHHHHHHHhhcCC
Confidence 4 7899999999999 999999999999874 36678888886543 33 4467999999999999
Q ss_pred CcccHHHHHHHHHccCCcHH----HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHhhcCC----------
Q 038890 136 DCLTFPFLLKECTKRLDGLV----GASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS-ARMLFDEMSN---------- 200 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~---------- 200 (569)
|..|+|+++.+.++.|+++. |.+++.+|++.|+.|+..+|..++..+++.++..+ +..++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998775 45788899999999999999999999999887643 4444444432
Q ss_pred --CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccC
Q 038890 201 --RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------RN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEE 267 (569)
Q Consensus 201 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (569)
.|..-|...+..|.+..|.+-|.++..-+.. ++ ..-|..+....++....+.-..+|+.|. .+
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV----P~ 427 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV----PS 427 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc
Confidence 2455677888889899999999888665542 22 2346677888889999999999999998 77
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHH
Q 038890 268 MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMIS 347 (569)
Q Consensus 268 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 347 (569)
-.-|+..+...++++....+.++-.-+++.+++..|..........++..+++.. ..|+...-..+-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQV 495 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHH
Confidence 7889999999999999999999999999999988875444444333333333322 0122111111111
Q ss_pred HHHHc-CChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH---HHHHHHHH
Q 038890 348 VFALN-GYGKE-AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA---CMIDILSR 422 (569)
Q Consensus 348 ~~~~~-g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~ 422 (569)
.+.+. -++.+ ....-.+|.+..+. ....+.++-.+.+.|..++|.++|..+.+.+.--|.....+ -+++.-.+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 11110 11112 22233344444333 34455555567788888888888887754444334444444 55566677
Q ss_pred cCCHHHHHHHHHhC
Q 038890 423 AGLFSEAERLIRSM 436 (569)
Q Consensus 423 ~g~~~~A~~~~~~~ 436 (569)
.+.+..|..+++-|
T Consensus 574 ~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLA 587 (625)
T ss_pred cCCHHHHHHHHHHH
Confidence 77888888888777
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.6e-16 Score=145.20 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
.+...+.+.|++++|+++++... ....+| |...|..+...+...++++.|...++++...+ +.++..+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~----~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAA----QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 44667778888888888886543 222133 34444445556667888899999888888765 3356667777777
Q ss_pred HHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
...+++++|..+++..-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 688999999988876643 456677788888999999999999999987543 3456778888889999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
..+++..+.. |.+......++..+...|+.+++.++++.. ..+.|+..+..+..++...|+.++|...++++.+..
T Consensus 167 ~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999999654 446788899999999999999988888777 223455678889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
|.|+.+...++.++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988764
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.2e-12 Score=120.91 Aligned_cols=382 Identities=14% Similarity=0.075 Sum_probs=251.1
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
.-|.++|+++ .|++.|.+.++ ..|| +..|.....+|...|+|+...+--...++.++. -...+..-.+++
T Consensus 123 N~~f~~kkY~------eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 123 NKFFRNKKYD------EAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred hhhhhcccHH------HHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3445556666 99999999998 5688 677777888888999999998888877776532 244555666777
Q ss_pred HhcCCHHHHHHHHh------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh------------------
Q 038890 183 MACGFVTSARMLFD------EMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIF------------------ 235 (569)
Q Consensus 183 ~~~g~~~~A~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~------------------ 235 (569)
-..|++++|+.=+. .....+. ..++.-..+.--...+.+-+..=.. |+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 77788877754211 1111000 0111111111111122222221000 1111
Q ss_pred -----HHHHHHHHHH--hCC---ChHHHHHHHHHchhccccCCCC---ccH------HHHHHHHHHHHccCCHHHHHHHH
Q 038890 236 -----SWNSIITGFV--QGG---RAREALELFQEMQSSSVEEMVK---PDK------ITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 236 -----~~~~l~~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~~---p~~------~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
....+..++. ..+ .+.+|.+.+.+-.... ..... .|. .+......-+.-.|+.-.+...|
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~-~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGS-ESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhh-hhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 1111111111 011 2333333333321000 00000 111 11111112234467888888899
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+...+.. +.+...|-.+..+|....+.++.+..|....+ .++.+|..-.....-.+++++|..-|++.... .|+
T Consensus 350 ~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe 426 (606)
T KOG0547|consen 350 DAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPE 426 (606)
T ss_pred HHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chh
Confidence 9888865 33344477788889999999999999998765 46788998888888899999999999998874 443
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------H
Q 038890 374 -HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD---------V 442 (569)
Q Consensus 374 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~ 442 (569)
...|..+--+..+.+.+++++..|++.++++ +..+..|+.....+...+++++|.+.|+.. .+.|+ +
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 4566666666678899999999999999776 667899999999999999999999999988 44444 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+-..++..-.+ +++.+|+.+++++++++|....++..|+..-.+.|+.++|+++|++-..
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222233 8999999999999999999999999999999999999999999998643
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.3e-11 Score=113.51 Aligned_cols=431 Identities=11% Similarity=0.087 Sum_probs=315.2
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHH
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQ 175 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 175 (569)
...|--..+--...++.. +|..+|++.+... ..+...|...+..-.+......|..+++..+..-+..|.. |
T Consensus 73 ~~~WikYaqwEesq~e~~------RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-W 144 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQ------RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-W 144 (677)
T ss_pred HHHHHHHHHHHHhHHHHH------HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-H
Confidence 344444444334445555 9999999998854 3455566667777778899999999999998875554443 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChH
Q 038890 176 NSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLDVALDLFRRMK--KRNIFSWNSIITGFVQGGRAR 251 (569)
Q Consensus 176 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 251 (569)
--.+-+--..|++..|.++|++..+ |+...|++.|..-.+.+.++.|..++++.. .|++.+|-.....-.+.|+..
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 3344555567999999999999876 999999999999999999999999999965 689999999999999999999
Q ss_pred HHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc--chhHHHHHHHHHhcCChHHHHH
Q 038890 252 EALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD--VVIGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 329 (569)
.+..+|...... ...-..+...+.+...--.+...++.|..+|+-+.+.- |.+ ...|..+...--+-|+......
T Consensus 225 ~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 225 LARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999987632 00111122333444333355677889999998888753 333 4566666655556676555444
Q ss_pred HH--------hhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccC
Q 038890 330 VF--------KEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-------TFVGLLSAC---AHSG 388 (569)
Q Consensus 330 ~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~ 388 (569)
.. +.+... |-.+|...+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 222222 5567777888888889999999999999875 555321 121111122 3578
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHH----HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHY----ACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
+.+.+.++++...+ -++-...++ ......-.++.++..|.+++... |.-|-..+|...|..-.+.++++....
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999998885 223333444 44445556889999999999988 888999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHH
Q 038890 464 VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLIL 543 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (569)
++++.++.+|.+..+|...+..=...|+++.|..+|+-..+... .+.|..-| . +.+......++.+++..+.
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellw---k----aYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLW---K----AYIDFEIEEGEFEKARALY 530 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHH---H----HhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999998877654 23354444 2 3344445566777888888
Q ss_pred HHHHH
Q 038890 544 NGLSK 548 (569)
Q Consensus 544 ~~l~~ 548 (569)
+++..
T Consensus 531 erlL~ 535 (677)
T KOG1915|consen 531 ERLLD 535 (677)
T ss_pred HHHHH
Confidence 77754
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=3e-13 Score=123.42 Aligned_cols=428 Identities=11% Similarity=0.053 Sum_probs=261.0
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHH-----HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIR-----ANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 138 (569)
.+...|.+-|... ..+.+|+..++-+.+.-...-..++. .+.+..++. +|++.|+..++.-...+..
T Consensus 202 svl~nlaqqy~~n--dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fs------kaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEAN--DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFS------KAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHHHhhhh--HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHH------HHHHHHHHHHhhccccchh
Confidence 4455555555555 55566666665555443333222222 233334444 7777777666642222333
Q ss_pred cHHHHHH----HHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------
Q 038890 139 TFPFLLK----ECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-------------- 200 (569)
Q Consensus 139 ~~~~ll~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------- 200 (569)
+-..++. .+.+.|.++.|...|+...+.. |+..+--.|+-++..-|+.++..+.|.+|..
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 3333333 2456777777777777776653 4544333344444456777777777776643
Q ss_pred --CChhHHHH-----HHHHHHhcC--CHHHHHHHHHhcC----CCChh-------------HHHH--------HHHHHHh
Q 038890 201 --RDVVSWNA-----MIIGYLRSG--DLDVALDLFRRMK----KRNIF-------------SWNS--------IITGFVQ 246 (569)
Q Consensus 201 --~~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~~--------l~~~~~~ 246 (569)
|+....+. .+.-+.+.+ +-++++-.--++. .|+.. .|.. -...|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 12221111 111121111 1222221111111 22110 0111 1234778
Q ss_pred CCChHHHHHHHHHchhccccCCCCccHHHHHHHH--HHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCCh
Q 038890 247 GGRAREALELFQEMQSSSVEEMVKPDKITIASVL--SACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCV 324 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 324 (569)
.|+++.|.++++-..+ ..-+.-...-+.+- ..+..-.++..|.++-+...... .-+......-.+.....|++
T Consensus 432 ~~d~~~aieilkv~~~----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEK----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred ccCHHHHHHHHHHHHh----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 8899999888887762 22222222222222 22222345666766666555432 23333333333444567999
Q ss_pred HHHHHHHhhCCCCChhHHHHHH---HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 325 ERAYGVFKEMPKKDTLAWTAMI---SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 325 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++..- +..+..++..+...|....+..+|++++....
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999988766544443 4567789999999999887653 34467788888899999999999999998776
Q ss_pred HhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 402 HVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
. -++.|+....-|.+.|-+.|+-..|.+..-+- .. +-+..+..-|..-|....-++.++.+|+++.-++|.-...-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 3 35778899999999999999999999886555 33 34777877777778888888999999999998888865555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
..++.++.+.|++.+|..+++.... .++.+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr-kfped 693 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR-KFPED 693 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-hCccc
Confidence 5566677889999999999998754 34433
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9e-12 Score=114.41 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=218.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhC
Q 038890 169 CDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNI-FSWNSIITGFVQG 247 (569)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~ 247 (569)
..|...+-....++.+.|..+.|...|......-+..|.+.+....-.-+.+.+..+.......+. ..--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 334444444445566677777777777776654444555555444444444444444433433211 1112344556666
Q ss_pred CChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 325 (569)
.+.+++..-..... ..|++.+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.-....++.
T Consensus 241 ~q~~e~~~k~e~l~----~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLS----SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHH----hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 67777777777776 556666666555566666777888888888888887631 123455555442222211111
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 326 RAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 326 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
---...-.+.+-.+.|...+..-|.-.++.++|...|++..+. .|. ...|+.+..-|...++...|.+-++.+.+..
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 1111112223334556666677777788888888888888774 333 4567777777888888888888888888544
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+.|-..|-.|.++|.-.+.+.-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+..+...+..|
T Consensus 395 --p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 395 --PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred --chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 567788888888888888888888888888 6666 677888888888888888888888888888877777888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..|.+.++.++|...+++-++
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888888877755
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5.3e-12 Score=125.23 Aligned_cols=344 Identities=15% Similarity=0.109 Sum_probs=223.2
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDV 221 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 221 (569)
+.+...|+++.|..++.+.++..+. +...|-.|..+|-..|+.+++...+-.... .|..-|-.+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344458888888888888887644 666777788888888888888776544432 455677777777777888888
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH----HHHHHHHHHHccCCHHHHHH
Q 038890 222 ALDLFRRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI----TIASVLSACAYLGAIDHGKW 294 (569)
Q Consensus 222 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~ 294 (569)
|.-.|.+..+. +...+-.-+..|-+.|+...|.+.|.++... ..+.|.. +...++..+...++.+.|.+
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888777653 2333334456777778888888888877632 1122222 23333445555566666666
Q ss_pred HHHHHHH-hCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 295 VHGYLRR-SGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 295 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
.++.... .+-..+...++.++..|.+...++.+......... +|..-|..- ..++ ..-..+++ ...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-~~~~~~~~--~~~~ 373 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-EEPNALCE--VGKE 373 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-cccccccc--CCCC
Confidence 6665554 22234455566666677776666666665544432 121111000 0000 00000000 0111
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL--VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME--PDVFV 444 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~ 444 (569)
..++... .-+.-++.+....+....+...+. ... +.-++..|.-+.++|...|++.+|+.+|..+ ..+ -+...
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 2333333 122223444455554444554444 333 3345678999999999999999999999999 222 35679
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
|..+..+|...|.+++|.+.|++++...|++..+...|...+.+.|+.++|.+++..+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999876
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=7.8e-12 Score=122.15 Aligned_cols=246 Identities=10% Similarity=0.034 Sum_probs=129.9
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHH--HHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIA--SVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+.|+++.|...+.++.+ ..|+..... .....+...|+++.|...++.+.+.. |.++.....+...|.+.|
T Consensus 129 ~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAE------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 455555555555555431 123322211 11334445555555555555554443 334444555555555555
Q ss_pred ChHHHHHHHhhCCCC---Ch--------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038890 323 CVERAYGVFKEMPKK---DT--------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 391 (569)
++++|.+++..+.+. +. .+|..++.......+.+...++++.+-+. .+.+......+..++...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 555555555544432 11 12222222223333444444555544322 2334555666666677777777
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
+|..++++..+ . +|+.... ++.+....++.+++++.++.. ...| |...+..+...|.+.+++++|.+.|+++.
T Consensus 281 ~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777766663 2 3444222 222333446777777766666 3344 34456666677777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 470 DLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 470 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 356 ~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776664 3455677777777777777777766543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.1e-11 Score=121.25 Aligned_cols=277 Identities=12% Similarity=-0.008 Sum_probs=218.8
Q ss_pred hcCCHHHHHHHHhhcCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH--HHHHHHHhCCChHHHHHH
Q 038890 184 ACGFVTSARMLFDEMSNR--DVVS-WNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWN--SIITGFVQGGRAREALEL 256 (569)
Q Consensus 184 ~~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~ 256 (569)
..|+++.|.+.+....+. ++.. |........+.|+++.|...|.++.+ |+..... .....+...|++++|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999998876652 2333 33334455889999999999999875 3433222 336788999999999999
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcch-------hHHHHHHHHHhcCChHHHHH
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVV-------IGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 329 (569)
++++.+ . .+-+......+...|.+.|+++.+..++..+.+.+..++.. .+..++.......+.+...+
T Consensus 176 l~~~~~----~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLLE----V-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHh----c-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999973 2 24567888889999999999999999999999887543321 23334444445566777788
Q ss_pred HHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 038890 330 VFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV 406 (569)
Q Consensus 330 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (569)
+++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.+
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 8887764 47788889999999999999999999998874 4454322 3344456699999999999998766
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+-|+..+..+...+.+.+++++|.+.|+.. ...|+..++..+...+.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567778899999999999999999999999 77899999999999999999999999999998764
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.3e-12 Score=125.47 Aligned_cols=280 Identities=14% Similarity=0.047 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH
Q 038890 217 GDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 217 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 293 (569)
-+..+|+..|...+. +| ..+...+..+|...+++++|.++|+.+.+. ..-..-+...|...+-.+-+. -+.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHH
Confidence 456788888888654 23 345667888999999999999999998743 222233567777777654321 222
Q ss_pred HHHH-HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 294 WVHG-YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 294 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
..+. .+.+. .+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2222 33333 2667899999999999999999999999998764 457788888888999999999999998765
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038890 370 VRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWG 446 (569)
Q Consensus 370 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 446 (569)
+.|.. ..|..+...|.+.++++.|+-.|+.+.+.. +-+.+....+...+.+.|+.++|+++++++ ..+| |+..-.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 33332 356667788999999999999999998644 456777888889999999999999999999 4444 666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.-+..+...+++++|+..++++++.-|++..++..++..|.+.|+.+.|+.-|.-+.+...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6777788899999999999999999999999999999999999999999998887766543
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7.8e-14 Score=130.17 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcC
Q 038890 142 FLLKECTKRLDGLVGASVYGQVVKFG-VCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSG 217 (569)
Q Consensus 142 ~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 217 (569)
.+...+...|+++.|.++++...... .+.+...|..+.......|+++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44555667777777777775544433 2334555555566666677777777777777652 23345555555 5677
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 038890 218 DLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 218 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
++++|.+++...-+ ++...+..++..+.+.++++++.++++.+.. ....+.+...|..+...+.+.|+.++|...
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE---LPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777776665532 3444556666667777777777777777542 222345566666666667777777777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP---KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
++++.+.. |.+..+...++..+...|+.+++.+++.... ..|+..|..+..++...|+.++|+.+|++..+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77776654 4445566666666666666666544444332 2344555555556666666666666666655431 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
|......+..++...|+.++|..+...+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4445555555555666666665555444
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=5.9e-11 Score=116.71 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHhhcCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--hHHHHHHHHHHhCCChHHHHHHH
Q 038890 185 CGFVTSARMLFDEMSN--RDV-VSWNAMIIGYLRSGDLDVALDLFRRMKK--RNI--FSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
.|+++.|.+.+.+..+ |+. ..+-.......+.|+.+.|...|.+..+ |+. ...-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555554433 221 1222333444455555555555555432 222 12222345555566666666666
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 303 (569)
+.+.+ . -+-+...+..+...+...|+++.+...+..+.+.+
T Consensus 177 ~~l~~----~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 177 DKLLE----M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHH----h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66542 1 12344455555566666666666666666666554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-10 Score=106.77 Aligned_cols=195 Identities=9% Similarity=0.014 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVF 349 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 349 (569)
+.|+.++.+.|+-.++.++|...|++..+.+ +.....++.+.+-|....+...|.+.|+...+ .|-..|..+.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 3455555666666666666666666666554 44455566666666666666666666665543 2445666666666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 429 (569)
...+.+.-|+-.|++..... +-|...|..|..+|.+.++.++|++.|..... .| ..+...+..|...|-+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666655531 22455666666666666666666666666653 22 23445566666666666666666
Q ss_pred HHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 430 ERLIRSM-------P-MEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 430 ~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
...|... + +.|. .....-|..-+.+.+++++|..+......-
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6655544 1 1121 112222333455566666666555555444
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-10 Score=108.17 Aligned_cols=440 Identities=12% Similarity=0.011 Sum_probs=287.7
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcC--CCCCcccHHHHHHHHhcCCCCCCCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHI--KRSDLYTYNIMIRANACKSSETNDT 116 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~ 116 (569)
.++..|.-+=+.+...+ .+| .-...+++.+.-. |+++.|-.+...- .+.|..........+.+..++.
T Consensus 30 ~~y~~a~f~adkV~~l~--~dp---~d~~~~aq~l~~~--~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~--- 99 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT--NDP---ADIYWLAQVLYLG--RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWD--- 99 (611)
T ss_pred HhhhHHHHHHHHHHhcc--CCh---HHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---
Confidence 44566655555555443 555 5566677777777 7888887776653 3567777777777777777777
Q ss_pred ChhHHHHHHHH----HHHC---------CCCCCccc----HHH-----HH--HHHHccCCcHHHHHHHHHHHHhCCCCcH
Q 038890 117 HSGKCLKLYKQ----MLCT---------GISPDCLT----FPF-----LL--KECTKRLDGLVGASVYGQVVKFGVCDDV 172 (569)
Q Consensus 117 ~~~~A~~~~~~----m~~~---------g~~p~~~~----~~~-----ll--~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 172 (569)
+|..++.. +..- -+.+|..- -+. ++ ..+....+.++|...|.+.+.. |.
T Consensus 100 ---~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~ 172 (611)
T KOG1173|consen 100 ---QALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DA 172 (611)
T ss_pred ---HHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----ch
Confidence 77777762 2100 01111111 000 01 1233344566666666666543 33
Q ss_pred hHHHHHHHHHHhc-CCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHH--HhcC--CCChhHHHHHHH
Q 038890 173 FVQNSVISLFMAC-GFVTSARMLFDEMSN-----RDVVSWNAMIIGYLRSGDLDVALDLF--RRMK--KRNIFSWNSIIT 242 (569)
Q Consensus 173 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~--~~~~~~~~~l~~ 242 (569)
..+.++...-... =...+-+.+|+.+.- .+......+.....-...-+.....- ..+. +.+......-..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 3333322211111 111122333332110 11111111111110000000000000 0000 124444555566
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++.-.|.-.|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 788899999999999998642 3566667777777888899888777777777765 3777889999999999999
Q ss_pred ChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+..+|+++|.+...-| ...|-.+...|+-.|..+.|+..+...-+. ++-...-+..+..-|.+.++.+.|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998876543 468999999999999999999999877653 111222233344567889999999999999
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
..... |.|+..++-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|.+.+.+++|+..+++++.
T Consensus 406 A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88554 667788888888888889999999999876 1122 456789999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 471 LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 471 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..|.++.++..++-.|...|+++.|.+.|.+..-
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999987654
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.4e-12 Score=122.71 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=218.1
Q ss_pred CHHHHHHHHhhcCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 187 FVTSARMLFDEMSN--RDV-VSWNAMIIGYLRSGDLDVALDLFRRMKK------RNIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 187 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
+..+|...|.++.. +|+ .....+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+.-. +..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~----Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA----LSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH----HHHH
Confidence 45788888888655 343 4556677889999999999999998875 356678877766543322 2222
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK 337 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 337 (569)
.+-+ ...-+-.+.+|.++.++|.-.++++.|.+.|+++.+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 410 aq~L----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDL----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHH----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2211 22225668999999999999999999999999998865 446788999999999999999999999999887
Q ss_pred ChhHH---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 038890 338 DTLAW---TAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY 413 (569)
Q Consensus 338 ~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (569)
|+..| .-+...|.+.++++.|+-.|++..+- .|. .+....+...+.+.|+.++|+++++++..-. +.|+..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhH
Confidence 76655 45678899999999999999998874 444 4556667777889999999999999998433 4455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
-..+..+...+++++|+..+++. .+.|+ ...+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66777788899999999999999 55664 56788888999999999999999999999998743
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=6.7e-11 Score=116.31 Aligned_cols=280 Identities=12% Similarity=0.001 Sum_probs=204.0
Q ss_pred HhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH--HHHHHHHHHHHccCC
Q 038890 214 LRSGDLDVALDLFRRMKK--RNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK--ITIASVLSACAYLGA 288 (569)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~--~~~~~ll~~~~~~~~ 288 (569)
...|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|.+.+.+.. .. .|+. .........+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~----~~--~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA----EL--AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----Hh--CCcCchHHHHHHHHHHHHCCC
Confidence 458999999999988765 332 334445678889999999999999986 22 2443 233335777888999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHH----HHHHHHHcCChhHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTA----MISVFALNGYGKEAFDT 361 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~ 361 (569)
++.|...++.+.+.. |.+..+...+...|...|+++.|.+.+..+.+. +...+.. ...+....+..+.+.+.
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999986 667788899999999999999999999988753 3332321 11122333333334445
Q ss_pred HHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHh
Q 038890 362 FREMEAEGV---RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH---YACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 362 ~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+..+.+... +.+...+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.++.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 555554321 1367788888899999999999999999999654 44331 11122222345788888888887
Q ss_pred C-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 436 M-PMEP-DV--FVWGALLGGCQMHGNVELGEKVAQY--LIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 436 ~-~~~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
. ...| |. ....++...+.+.|++++|.+.|+. ..+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 4445 33 5677899999999999999999995 66677765 4577999999999999999999998643
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=2.7e-09 Score=102.35 Aligned_cols=511 Identities=12% Similarity=0.116 Sum_probs=282.6
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKS-PCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
-...+.+.+..+|++...+..|+..++. .+..+. .++...+...... |-++.+.+++++..+-++..-+-.|..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~---rIW~lyl~Fv~~~--~lPets~rvyrRYLk~~P~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD---RIWDLYLKFVESH--GLPETSIRVYRRYLKVAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc---cchHHHHHHHHhC--CChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4556777788888899999888888765 344455 6788888888888 888999999999888777778888888
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCC------CCCCcccHHHHHHHHHccCCcHH---HHHHHHHHHHhCCCCc--HhH
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTG------ISPDCLTFPFLLKECTKRLDGLV---GASVYGQVVKFGVCDD--VFV 174 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~ 174 (569)
+...+++. +|-+.+...+... .+.+...|.-+-...++.-+.-. ...+++.++.. -+| ...
T Consensus 179 L~~~d~~~------eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~L 250 (835)
T KOG2047|consen 179 LAKSDRLD------EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFL 250 (835)
T ss_pred HHhccchH------HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHH
Confidence 88899988 8888888876432 12233344444444444333222 22333333332 223 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh----------------cC------CHHHHHHHHHhcC
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR----------------SG------DLDVALDLFRRMK 230 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~----------------~g------~~~~A~~~~~~~~ 230 (569)
|++|.+-|.+.|.++.|..+|++... -++.-|..+.+.|+. .| +++-.+.-|+.+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 88899999999999999998887655 222223333333332 11 1222223333332
Q ss_pred CC---------------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-c-HHHHHHHHHHHHccCCHHHHH
Q 038890 231 KR---------------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-D-KITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 231 ~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~ 293 (569)
.. ++..|..-+ -+..|+..+-...|.+..+.- .....+ . ...|..+.+.|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 10 111222211 123344555555555554221 111111 1 234555556666666666666
Q ss_pred HHHHHHHHhCCCCc---chhHHHHHHHHHhcCChHHHHHHHhhCCC-C--------------------ChhHHHHHHHHH
Q 038890 294 WVHGYLRRSGLDCD---VVIGTALVDMYGKCGCVERAYGVFKEMPK-K--------------------DTLAWTAMISVF 349 (569)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~ 349 (569)
.+|++..+...+-- ..+|..-.+.-.+..+++.|+++.+.... | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 66666655433222 33444445555555566666665554431 0 122333333333
Q ss_pred HHcCChhHHHHHHHHHHHCC----------------------------------CCCCHH-HHHHHHHHHH---ccCCHH
Q 038890 350 ALNGYGKEAFDTFREMEAEG----------------------------------VRPNHV-TFVGLLSACA---HSGLVE 391 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~----------------------------------~~p~~~-~~~~ll~~~~---~~~~~~ 391 (569)
-..|-++....+|+++.+.. -.|+.. .|+..+.-+. .....+
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 33344444444444443322 123332 3333333332 234678
Q ss_pred HHHHHHHHhHHhcCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVY--HYACMIDILSRAGLFSEAERLIRSM--PMEPDV--FVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|..+|++..+ |++|... .|......=-+.|....|++++++. ++++.. ..|+..|.-....=.+..-..+|
T Consensus 568 raRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 88888888884 4455432 2222233334567788888888888 555433 47777777655555566777888
Q ss_pred HHHhhcCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHH
Q 038890 466 QYLIDLDPLNH--AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLIL 543 (569)
Q Consensus 466 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (569)
+++++.-|++. ......++.=.+.|.++.|..++.--.+.- .|.+.+-.|-.+ -.....||+.+...+++
T Consensus 646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-dPr~~~~fW~tw-------k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-DPRVTTEFWDTW-------KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-CCcCChHHHHHH-------HHHHHhcCCHHHHHHHH
Confidence 88888777643 334556677788899999999887654432 222222233222 22345677755555544
Q ss_pred HHHHHHHHhCCcccCccccccc
Q 038890 544 NGLSKIMKNGGFGQYIRGLSME 565 (569)
Q Consensus 544 ~~l~~~~~~~g~~~~~~~~~~~ 565 (569)
++....+ ..|-.|...+.++
T Consensus 718 -RikRsvq-a~yn~~~~~~a~q 737 (835)
T KOG2047|consen 718 -RIKRSVQ-ATYNTDVNSMAHQ 737 (835)
T ss_pred -HHHHHHH-HhhhhhHHHHHHH
Confidence 5533332 2355555444443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=4.3e-10 Score=102.01 Aligned_cols=274 Identities=15% Similarity=0.059 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 185 CGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKR----NIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
.|++..|++...+-.+ .....|..-..+--+.||.+.+-..+.+..++ +...+-.........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5667777666665444 22233444445555566666666666666543 2233444455566666666666666
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc-------hhHHHHHHHHHhcCChHHHHHH
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV-------VIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
.++... -+-++.......++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...
T Consensus 177 ~~ll~~-----~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 177 DQLLEM-----TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHh-----CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 665421 1334555666666666666666666666666666543332 2333344333333334443334
Q ss_pred HhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 038890 331 FKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVE 407 (569)
Q Consensus 331 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 407 (569)
++..+. .++..-.+++.-+...|+.++|.++.++..+.+..|+. ...-.+.+.++...-++..+.-.+.++
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-- 325 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-- 325 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC--
Confidence 444432 24444445555555555555555555555555444441 111233444555555555544444442
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
.++..+..|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22244555555555555555555555544 445555555555555555555555555555444
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.2e-10 Score=102.22 Aligned_cols=291 Identities=12% Similarity=0.063 Sum_probs=158.6
Q ss_pred cCCHHHHHHHHhhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhcCC-CChh------HHHHHHHHHHhCCChHHHH
Q 038890 185 CGFVTSARMLFDEMSNRDVVS---WNAMIIGYLRSGDLDVALDLFRRMKK-RNIF------SWNSIITGFVQGGRAREAL 254 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~a~ 254 (569)
.++.++|.+.|-+|.+.|..| ..+|.+.|-+.|..|.|+++-+.+.+ ||.. ....|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 556667777776666644333 34555666666666666666665543 3321 2334455566666666666
Q ss_pred HHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 255 ELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
.+|..+. ..+ ..-......++..|-...+|++|...-+++.+.+-.+... .+.
T Consensus 128 ~~f~~L~----de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA------------------- 180 (389)
T COG2956 128 DIFNQLV----DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA------------------- 180 (389)
T ss_pred HHHHHHh----cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH-------------------
Confidence 6666664 211 1223344555555555566666655555555543222110 011
Q ss_pred CCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 335 PKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
..|--+...+....+.+.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+.. ...-..+..
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~ 253 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLE 253 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 11223334444456666777777766654211 22233344556666777777777777776322 122234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH---HcC
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA---KAG 490 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g 490 (569)
.|..+|...|+.++....+.++ ...+....-..+........-.+.|..++.+-+...|.-. .+..|++... .-|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhcccccc
Confidence 6777777777777777777666 3344444444455554555556666666666666666533 3444444332 234
Q ss_pred ChHHHHHHHHHHHHCCCCCC
Q 038890 491 RFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~~~ 510 (569)
++.+-..+++.|....++.+
T Consensus 333 ~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred chhhhHHHHHHHHHHHHhhc
Confidence 57777777888876666655
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.2e-10 Score=101.47 Aligned_cols=276 Identities=13% Similarity=0.053 Sum_probs=216.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhcCCHHHHHH
Q 038890 149 KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR----DVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 149 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
-.|++..|++...+..+.+.. ....|..-+.+--..|+.+.+-.++.+..++ +...+-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 359999999999998888755 3445556667778889999999999998773 34467777788889999999998
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH-------HHHHHHHHHHHccCCHHHHHH
Q 038890 225 LFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK-------ITIASVLSACAYLGAIDHGKW 294 (569)
Q Consensus 225 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~ 294 (569)
-++++.+ .+.........+|.+.|++..+..++..+. +.+.-.|. .+|..+++-....+..+.-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~----ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR----KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH----HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 8877654 567788889999999999999999999998 44444443 467777777766666666666
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 295 VHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.|+..... ...++.+..+++.-+.++|+.++|.++..+..+. |.. -...-.+.+-++...-++..++-.+. .+-
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 66665443 3566778888999999999999999998887664 333 23334456678888888877776654 223
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 446788889999999999999999997773 3699999999999999999999999998876
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.1e-09 Score=99.84 Aligned_cols=222 Identities=11% Similarity=-0.026 Sum_probs=174.1
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+.-.|+.-.|..-|+...+. . +.+...|--+...|....+.++..+.|..+.+.+ +.++.+|..-...+.-.+
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l----~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKL----D-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhc----C-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 455678889999999998732 2 2222237777778999999999999999999886 677888888888899999
Q ss_pred ChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
++++|..-|++...- +...|-.+..+..+.+.+++++..|++.++. ++-....|+.....+...++++.|.+.|+.
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999988764 4556666777777889999999999999876 455577899999999999999999999998
Q ss_pred hHHhcCC------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 400 MRHVYLV------EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 400 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
..+.-.. .+.+.+-..++..- -.+++..|+.++++. .+.|. ...|..|...-.+.|+.++|+++|++...+
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8753211 11122222333222 348999999999998 77774 468999999999999999999999998775
Q ss_pred C
Q 038890 472 D 472 (569)
Q Consensus 472 ~ 472 (569)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.1e-09 Score=96.47 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=134.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChh------HHHHHHHHHHhcCCHHHH
Q 038890 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVV------SWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 150 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~A 222 (569)
..+.++|.+.|-+|.+.... +..+.-+|.+.|-+.|.+|.|+++-..+.+ ||.. ....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46788888888888885533 556666788888889999999998887766 4432 344566778889999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCHHHHHHH
Q 038890 223 LDLFRRMKKRN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
+.+|..+.+.+ ......|+..|-+..+|++|+++-+++.+. +-.+. ...|.-+...+....+++.|..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999988633 345677899999999999999999988742 22222 23345555555566677777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh----HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL----AWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|...|+.++....+..+.+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77766654 222333333444455555555555554444443321 223333344444444444444444433
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2.3e-10 Score=104.07 Aligned_cols=196 Identities=15% Similarity=0.040 Sum_probs=149.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34455566666666777777776665543 234566667777788888888888888877653 23455667777788
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 462 (569)
...|++++|...++........+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999888888753222334556777888899999999999999888 4344 4567888888999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988888888888899999999999999999887754
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=2.7e-09 Score=105.96 Aligned_cols=427 Identities=14% Similarity=0.086 Sum_probs=237.4
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC----CcccHHHHHHHHhcCCCCCCCCChhHHH
Q 038890 47 IHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS----DLYTYNIMIRANACKSSETNDTHSGKCL 122 (569)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~~~~~~~A~ 122 (569)
++..+...|+.|+. .+|..++.-||.. |+.+.|- +|..|.-+ +...++.++.+..++++.+ .+.
T Consensus 12 fla~~e~~gi~PnR---vtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E------npk 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNR---VTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE------NPK 79 (1088)
T ss_pred HHHHHHHhcCCCch---hhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhccccccccc------CCC
Confidence 44455566666666 6777777777777 7777766 66666532 3455666666666666555 222
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH-------hCCCC-cHh-------------HHHHHHHH
Q 038890 123 KLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK-------FGVCD-DVF-------------VQNSVISL 181 (569)
Q Consensus 123 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~-~~~-------------~~~~l~~~ 181 (569)
.|.+.||..|+.+|...||+..-..+-+.+.. .|+.. ... .-..++..
T Consensus 80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 46666777777777777665442222111111 12110 000 01123333
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR-SGDLDVALDLFRRMKK-RNIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
..-.|-++.+++++..++. .+. +....++-+.. ...+++-..+-....+ +++.+|..++..-.-+|+.+.|..++
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 4445666666666665553 111 11112332222 2234444444444444 67777888888777888888888888
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHH-----------
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVER----------- 326 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----------- 326 (569)
.+|. ..|++.+.+-|-.++-+ .++...++.+++.|...|+.|+..|+...+..+..+|....
T Consensus 228 ~emk----e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~ 300 (1088)
T KOG4318|consen 228 YEMK----EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGF 300 (1088)
T ss_pred HHHH----HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhh
Confidence 8887 66677776666555544 66777777777777777888877777666555554333111
Q ss_pred -------------HHHHHhhC---------CC-------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC-H
Q 038890 327 -------------AYGVFKEM---------PK-------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG--VRPN-H 374 (569)
Q Consensus 327 -------------A~~~~~~~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~-~ 374 (569)
|.+.++.- ++ ....+|...+.. ...|.-++++++-..|...- ..++ .
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 11111111 00 012233322221 22444444444444332210 1111 1
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 038890 375 VTFVGLLS------------------------------------------------------------------------ 382 (569)
Q Consensus 375 ~~~~~ll~------------------------------------------------------------------------ 382 (569)
..|..++.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 11211111
Q ss_pred --------HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 038890 383 --------ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDVFVWGALL 449 (569)
Q Consensus 383 --------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~ 449 (569)
.|++.-+..+++..-+... .. .-...|..||+.+......+.|..+.++. ....|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye-~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYE-DL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1111111111111111111 11 01245778888888888899999888888 2334666788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLD---PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
+.+.+.+....+..+++++.+.- |.....+..+.......|+.+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999998732 4334556667777888999999999999999988865
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=1.3e-07 Score=91.02 Aligned_cols=289 Identities=15% Similarity=0.131 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-------HHHHHHHHHHhCCChHHHHHHHHHchhccc-------cCCCC
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKKRNIF-------SWNSIITGFVQGGRAREALELFQEMQSSSV-------EEMVK 270 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~ 270 (569)
.|..+...|-..|+.+.|..+|++..+-+-. +|-.....-.+..+++.|+++++....... ..+.+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 4667777888889999999999888764322 344444455566778888888877652110 01111
Q ss_pred c------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CCh-
Q 038890 271 P------DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDT- 339 (569)
Q Consensus 271 p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~- 339 (569)
+ +...|...+..--..|-++....+|+.+.+..+. ++.+.-...-.+-...-++++.++|++-.. |+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1233444555555677888888888888887643 222222233334455668888888887654 332
Q ss_pred hHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHhHHhcCCCCC--HhH
Q 038890 340 LAWTAMISVFALN---GYGKEAFDTFREMEAEGVRPNHVTFVGLLSA--CAHSGLVEKGRWCFVMMRHVYLVEPH--VYH 412 (569)
Q Consensus 340 ~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 412 (569)
..|+.-+.-+.+. ...+.|..+|++.++ |++|...-+..|+-+ -...|-...|+.++++.... +++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 4577666555542 478999999999998 677765433333322 23568888999999987642 3333 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEPDVF---VWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMY 486 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 486 (569)
|+..|.--...=-+.....+|++. ..-|+.. ....+...-.+.|..++|..++....+.-+| +..+|...=..=
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 777765444333344445555555 3345543 3333444567899999999999999986644 677888888888
Q ss_pred HHcCChHHHHH
Q 038890 487 AKAGRFDDVKK 497 (569)
Q Consensus 487 ~~~g~~~~A~~ 497 (569)
.+.|+-+-..+
T Consensus 705 vrHGnedT~ke 715 (835)
T KOG2047|consen 705 VRHGNEDTYKE 715 (835)
T ss_pred HhcCCHHHHHH
Confidence 89998443333
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.2e-08 Score=90.19 Aligned_cols=448 Identities=11% Similarity=-0.045 Sum_probs=272.8
Q ss_pred HhhhcCCCCCCCCCC-CCCCHHHHHHHHH----hhcChHHHHHHHHHHHhcCC----------------CCCCchhHHHH
Q 038890 9 SYSLLNSPAKVSPPN-KESTKLILRNAID----ECKNMRELKEIHTQIIKSPC----------------LQTNDHHSLIT 67 (569)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~~ 67 (569)
+.+++.-+...++|. .++....+...+. ....+..+.+-|++++.... .+.+.....-.
T Consensus 22 ~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r 101 (564)
T KOG1174|consen 22 AADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRR 101 (564)
T ss_pred HHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHH
Confidence 344555555555543 3333333333332 23457777777777764321 11122224556
Q ss_pred HHHHHhhcCCCCChhHHHHHhhcCCCC-CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 038890 68 RLLFFCALSVSGSLSYATNVFSHIKRS-DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKE 146 (569)
Q Consensus 68 ~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 146 (569)
..+..|-.. ++-+.|......++.. ....-|.|+.-+...|.... ++.--+...+..- | .-...|.+
T Consensus 102 ~~aecy~~~--~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~-----~~vl~ykevvrec--p---~aL~~i~~ 169 (564)
T KOG1174|consen 102 RAAECYRQI--GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHK-----EAVLAYKEVIREC--P---MALQVIEA 169 (564)
T ss_pred HHHHHHHHH--ccchHHHHHHhcCCccccchhHHHHHHHHHhcccccc-----HHHHhhhHHHHhc--c---hHHHHHHH
Confidence 667777777 8888888888887753 34444555554444443330 2222222222110 0 11111111
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHHH--hhcCC---CChhHHHHHHHHHHhcCCH
Q 038890 147 CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMAC--GFVTSARMLF--DEMSN---RDVVSWNAMIIGYLRSGDL 219 (569)
Q Consensus 147 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~--~~~~~---~~~~~~~~l~~~~~~~g~~ 219 (569)
..+.+ ...+...-..|-...+.|+.......+.+++.+ ++-..|...+ -+... .|+.....+...+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 11111 011111111222223344444444444444433 4433443333 22222 4666778888889999999
Q ss_pred HHHHHHHHhcCCCChhHH---HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 220 DVALDLFRRMKKRNIFSW---NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 220 ~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++|+..|++..-.|+.+. ....-.+.+.|+++....+...+... ..-....|..-+.......+++.|..+-
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999988765444332 22233456778888887777776521 1122333333334445667888888888
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
++..+.+ +.+...+-.-..++...|+.++|.-.|+.... .+...|.-++..|...|.+.+|..+-+..... +..+
T Consensus 324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s 401 (564)
T KOG1174|consen 324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS 401 (564)
T ss_pred HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence 8777654 44555565566778888999999888887653 36789999999999999999998887766553 3445
Q ss_pred HHHHHHHH-HHH-HccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 374 HVTFVGLL-SAC-AHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 374 ~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
..+...+. ..| ....--++|.+++++..+. .|+ ....+.+...+.+.|..++++.+++.. ...||...-+.|.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHH
Confidence 66666553 333 3444567888888887742 454 456677888899999999999999988 7788999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
..+...+.+++|.+.|..+.+++|.+..+.
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999986543
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=8.2e-10 Score=109.53 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 038890 123 KLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRD 202 (569)
Q Consensus 123 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 202 (569)
..+-.+...|+.||..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 57788889999999999999999999999999998 9999988777778889999999888888877665 688
Q ss_pred hhHHHHHHHHHHhcCCHHH
Q 038890 203 VVSWNAMIIGYLRSGDLDV 221 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~ 221 (569)
..+|..|..+|...||...
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8899999999999999765
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2e-07 Score=89.10 Aligned_cols=439 Identities=11% Similarity=0.068 Sum_probs=262.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHH--h
Q 038890 30 ILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRAN--A 107 (569)
Q Consensus 30 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~ 107 (569)
+=++.....+++++|.+.-..++..++ .++ ..+..=+-+.... +++++|+.+.+.-........-.+-.+| .
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~---~a~~cKvValIq~--~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDE---DAIRCKVVALIQL--DKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC-CcH---hhHhhhHhhhhhh--hHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 334444455789999999999998874 333 4555555555666 8999999777665422221111134444 4
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhc
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCD-DVFVQNSVISLFMAC 185 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~ 185 (569)
+.+..+ +|+..++ |..++.. +...-...|.+.|++++|.++|+.+.+.+.+. +...-..++. .
T Consensus 91 rlnk~D------ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~ 155 (652)
T KOG2376|consen 91 RLNKLD------EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----V 155 (652)
T ss_pred HcccHH------HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----H
Confidence 566667 9998888 3344333 55555566889999999999999998876432 1222222222 1
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHhcC--------CCC-----hh-----HHHHHHHHH
Q 038890 186 GFVTSARMLFDEMSNRDVVSWNAMI---IGYLRSGDLDVALDLFRRMK--------KRN-----IF-----SWNSIITGF 244 (569)
Q Consensus 186 g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~l~~~~ 244 (569)
+-.-.+. +.+........+|..+. -.++..|++.+|+++++... ..| .. .---|...+
T Consensus 156 ~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 156 AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 2122222 34444443344444443 34567899999999998872 111 11 122355677
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH---HHHccCC-HH-HHHHHHH------------HHHHhCCCCc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS---ACAYLGA-ID-HGKWVHG------------YLRRSGLDCD 307 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~---~~~~~~~-~~-~a~~~~~------------~~~~~~~~~~ 307 (569)
...|+.++|..+|...++.. ++|........+ +.....+ ++ .++..++ .+... ..-.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~ 308 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQA 308 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 88999999999999987432 345433322222 2211111 11 1111111 11110 0011
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCCC-hhHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKKD-TLAWTAMISVFAL--NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...-+.++..| .+..+.+.++........ ...+..++....+ ...+..+..++...-+....-........+...
T Consensus 309 i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11123333333 356677777777776543 3444455544332 235777888887766542222234555556677
Q ss_pred HccCCHHHHHHHHH--------HhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCH----HHHHH
Q 038890 385 AHSGLVEKGRWCFV--------MMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDV----FVWGA 447 (569)
Q Consensus 385 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~----~~~~~ 447 (569)
...|+++.|.+++. .+.+ . .-.+.+...+...+.+.++-+.|.+++.+. ...+.. .++..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~-~--~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILE-A--KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhh-h--ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 88999999999998 4442 2 233445566777788888877777777665 111222 23344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+...-.+.|+.++|...++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 444456789999999999999999999999999999999886 677787776654
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=5.2e-08 Score=95.88 Aligned_cols=367 Identities=16% Similarity=0.088 Sum_probs=222.3
Q ss_pred CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-ChhHH
Q 038890 132 GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----R-DVVSW 206 (569)
Q Consensus 132 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~ 206 (569)
.+.-|...|..+.-++...|+++.+.+.|++....-+. ....|..+...|..+|.-..|..+++.-.. | |+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456667777777777777777777777777664433 455666677777777777777777766544 2 22222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-----------CChHHHHHHHHHchhcccc
Q 038890 207 NAMIIGYL-RSGDLDVALDLFRRMKK--------RNIFSWNSIITGFVQG-----------GRAREALELFQEMQSSSVE 266 (569)
Q Consensus 207 ~~l~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~ 266 (569)
-..-..|. +.+..+++++.-.+... .....|..+.-+|... ....++++.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~---~ 473 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ---F 473 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh---c
Confidence 22222222 23445554444333321 1223333333333221 123456666666653 2
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---------
Q 038890 267 EMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--------- 337 (569)
Q Consensus 267 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 337 (569)
.+..|+...|.+ --|+-.++++.|....++..+.+-..+...+..|.-.+...+++.+|+.+.+.....
T Consensus 474 d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 223333333332 234556677777777777777654566666666666667777777777666544321
Q ss_pred ----------C----hhHHHHHHHHHH------H-----------------cCChhHHHHHHHHH--------HHCC---
Q 038890 338 ----------D----TLAWTAMISVFA------L-----------------NGYGKEAFDTFREM--------EAEG--- 369 (569)
Q Consensus 338 ----------~----~~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m--------~~~~--- 369 (569)
| ..+...++..+- . .++..+|......+ ...|
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 0 011111111111 0 01111111111111 0001
Q ss_pred ------CC--CCH------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 370 ------VR--PNH------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 370 ------~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+. |+. ..|......+...+..+++...+.+..... +.....|......+...|.+++|.+.|..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11 221 123344456677788888887777776433 45567788888889999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 436 M-PMEPD-VFVWGALLGGCQMHGNVELGEK--VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 436 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
. .+.|+ +....++...+.+.|+..-|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|....+..
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8 67775 4588899999999999888888 9999999999999999999999999999999999999987754
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.6e-10 Score=100.24 Aligned_cols=225 Identities=12% Similarity=-0.021 Sum_probs=158.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcC
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DTLAWTAMISVFALNG 353 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 353 (569)
..+.++|.+.|.+.+|++.++...+. .|-+.||..|..+|.+..++..|+.+|.+-.+ | ++....-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34555556666666666655555443 34445555566666666666666666655543 2 2222334455566667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLI 433 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (569)
+.++|.++|+...+.. +.+.....++...|...++++-|+.+++.+. ..|+ -++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777888887777642 2344555566667777788888888888887 4553 56777888888888888888888777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 434 RSM---PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 434 ~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+. -..|+ ..+|..+.......||+..|.+.|+-+...++++...+++|+-.-.+.|++++|..++....+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 766 22233 45788888888889999999999999999999999999999999999999999999999876643
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.6e-08 Score=90.22 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=99.9
Q ss_pred HHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCC
Q 038890 34 AIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKS 110 (569)
Q Consensus 34 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 110 (569)
=+....++..|+.+++.....+-.... .+...+...+-+. |++++|...+..+.+ ++...|-.+.....--|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~---~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEED---SLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhH---HHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 344567788888888777755544444 5666677777777 888888888887764 34455555554444456
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISPDCLTFPF-LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVT 189 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 189 (569)
.+. +|..+-.+. |+...... ++....+.++-++-..+.+.+.+. ..---+|..+..-.-.+.
T Consensus 106 ~Y~------eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 106 QYI------EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred HHH------HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHH
Confidence 666 666665443 33333333 334445666666665555544332 122234444444455677
Q ss_pred HHHHHHhhcCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHhc
Q 038890 190 SARMLFDEMSN--RDVVSWNAMI-IGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 190 ~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 229 (569)
+|.++++++.. |.-...|..+ -+|.+..-++-+.+++.-.
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 88888887765 3333444333 3455555555555555443
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.2e-09 Score=106.39 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=147.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh-----C-CCCcc-hhHHHHHHHHHhcCChHHHHHHHhhCCC--------C--
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRS-----G-LDCDV-VIGTALVDMYGKCGCVERAYGVFKEMPK--------K-- 337 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-- 337 (569)
++..+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334444455555555555544444432 1 01111 1223345555566666666555555432 1
Q ss_pred -ChhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CC
Q 038890 338 -DTLAWTAMISVFALNGYGKEAFDTFREMEA-----EGV-RPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYL--VE 407 (569)
Q Consensus 338 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 407 (569)
-..+++.|...|.+.|++++|...+++..+ .|. .|.. ..++.+...|+..+++++|..+++...+... +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 123455556666666666666655555432 122 2222 2456667778888999999988887665432 11
Q ss_pred CC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 038890 408 PH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID--- 470 (569)
Q Consensus 408 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 470 (569)
++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 367899999999999999999999887 22232 45778899999999999999999998765
Q ss_pred -cCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 471 -LDPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 471 -~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344 45678999999999999999999998885
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=3.5e-09 Score=96.26 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=106.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFAL 351 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 351 (569)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 22334444444555555555555555544432 233344555555566
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 352 NGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
.|++++|...+++.......| ....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665432212 23345555666667777777777777766432 334556666777777777777777
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 431 RLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 431 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
..+++. .. +.+...+..+...+...|+.+.|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777766 22 224455556666666777777777776666554
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.7e-07 Score=92.75 Aligned_cols=434 Identities=13% Similarity=0.077 Sum_probs=232.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC--Cccc-HHHHHHHHh
Q 038890 31 LRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS--DLYT-YNIMIRANA 107 (569)
Q Consensus 31 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~ 107 (569)
.+.++...|++++|+..++...+. +.... .+.......+.+. |+.++|..+|..+... +-.. |..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~---~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKL---AVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHH---HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 456778889999999998776654 33444 6888889999999 9999999999998853 3333 344444442
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG-LVGASVYGQVVKFGVCDDVFVQNSVISLFMACG 186 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 186 (569)
...... ....+...++|+.+...- |.......+.-.+.....+ ..+..++..+++.|++ .+++.|-..|....
T Consensus 84 ~~~~~~-~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLS-DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred hhcccc-cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 232211 223347788888887642 5555554443333332223 2455677777788865 34556666666444
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCh--hHHHHHHHHHHhCCChHHHHHHHHHchhc
Q 038890 187 FVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK-KRNI--FSWNSIITGFVQGGRAREALELFQEMQSS 263 (569)
Q Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 263 (569)
+.+-...++..... .....+.+.... ..-. .|+. .++..+...|...|++++|++++++....
T Consensus 158 K~~~i~~l~~~~~~-----------~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 158 KAAIIESLVEEYVN-----------SLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHHHHHHHH-----------hhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44444444333211 000001100000 0001 1222 23345556666677777777777766521
Q ss_pred cccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh----
Q 038890 264 SVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDT---- 339 (569)
Q Consensus 264 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 339 (569)
.+..+..|..-.+.+-+.|++.+|...++.+.... .-|..+.+..+..+.+.|++++|.+++....+.+.
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 12235566666666777777777777777766654 45566666666667777777777777666655431
Q ss_pred ------hHH--HHHHHHHHHcCChhHHHHHHHHHHHC-------CC--------CCCHHHHHHHHHHHHccCC-------
Q 038890 340 ------LAW--TAMISVFALNGYGKEAFDTFREMEAE-------GV--------RPNHVTFVGLLSACAHSGL------- 389 (569)
Q Consensus 340 ------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~-------~~--------~p~~~~~~~ll~~~~~~~~------- 389 (569)
..| .....+|.+.|++..|+.-|....+. .+ +.+..+|..+++..-+...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~ra 377 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRA 377 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHH
Confidence 122 22345566677766666555544321 10 1122233333332211111
Q ss_pred HHHHHHHHHHhHHhcCCCC-----------CHhHHHHHHHHH---HHcCCHHHHHHHHH-----------hC------CC
Q 038890 390 VEKGRWCFVMMRHVYLVEP-----------HVYHYACMIDIL---SRAGLFSEAERLIR-----------SM------PM 438 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~ 438 (569)
...|.+++-.+........ +..--..+..-. .+...-+++...-. .. +.
T Consensus 378 a~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (517)
T PF12569_consen 378 AKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKK 457 (517)
T ss_pred HHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcC
Confidence 1233344433332110000 000001111100 11111111111110 00 12
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 439 EPDVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.||+. ..-+.+.. -.++|.++++-+.+..|++..+|..-...|.+.|++--|.+.+.+
T Consensus 458 D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 458 DDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 23332 12233444 458999999999999999999999999999999999999887654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.8e-08 Score=92.78 Aligned_cols=445 Identities=10% Similarity=-0.014 Sum_probs=279.2
Q ss_pred CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-------
Q 038890 21 PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR------- 93 (569)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~------- 93 (569)
...+|..-.-+++++.-.|.++.|..+...-.-. ..+. .....+...+.+. .+++.|..++...+.
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~---~cryL~~~~l~~l--k~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDI---ACRYLAAKCLVKL--KEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhH---HHHHHHHHHHHHH--HHHHHHHHHhcccchhhcchhh
Confidence 3477788889999998888888887666554322 2344 5666666777777 889999999883320
Q ss_pred --CC--------ccc----HHHHHHHHhcCCCCC-CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 94 --SD--------LYT----YNIMIRANACKSSET-NDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 94 --~~--------~~~----~~~li~~~~~~~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
.+ ..- -+.-.+.|.-+|..- ...+.++|.+.|.+... .|...|..+..--.. ..-.+.+
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~E 191 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQE 191 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhH
Confidence 11 111 112222233333322 22223377777777665 344444443322111 1111112
Q ss_pred HHHHHHHhCCC----CcHhHHHHHHHHHHhcCCHHHHHHHH--hhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 159 VYGQVVKFGVC----DDVFVQNSVISLFMACGFVTSARMLF--DEMS--NRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 159 ~~~~~~~~g~~----~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
.++.+...... -+......+.....-...-+.....- +.+. +.++........-+...+++.+...+++...
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 22222221111 11111111111110000000000000 0011 1344455556666777899999999998887
Q ss_pred CCC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc
Q 038890 231 KRN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD 307 (569)
Q Consensus 231 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 307 (569)
+.+ ...+..-|.++...|+..+-.-+=.++++ ..|-...+|-++.-.|...|...+|.+.|.+....+ +.-
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~f 345 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTF 345 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccc
Confidence 643 34555666788888888887777777752 245567888888888888899999999998877654 223
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSA 383 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 383 (569)
...|-.+...|.-.|..|.|...|....+ ..-..+.-+..-|.+.++.+.|.+.|.+... +.| |+..++-+.-.
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVV 423 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhe
Confidence 45677888889999999999888876543 1222233355567888999999999988776 444 45556655555
Q ss_pred HHccCCHHHHHHHHHHhHHhcC-CC----CCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYL-VE----PHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 456 (569)
....+.+.+|..+|+.....-. +. .-..+++.|..+|.+.+.+++|+..++.. -.+.|..++.++.-.+...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 5667889999999887762110 01 13356889999999999999999999988 33447889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+++.|++.|.++..+.|++..+-..|..+.
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999876666555443
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=7.4e-10 Score=97.49 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=194.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
+.+.++|.+.|.+.+|.+.|+.-++ -.|-+.||..+-++|.+..++..|+.++.+-.+. .|.++.......+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 4688899999999999999998763 3577889999999999999999999999988775 36666666778888
Q ss_pred HHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+...++.++|.++|+.+.+. ++.....+...|.-.++.+-|+..|+++++.|+. +...|+.+.-+|...++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999999988764 5555666677788899999999999999999976 7788899999999999999999
Q ss_pred HHHHHhHHhcCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 395 WCFVMMRHVYLVEPH--VYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.-|+...... -.|+ ..+|-.+.....-.|++.-|.+.|+-. ....+...++.|.-.-.+.|++++|..++..+..
T Consensus 379 ~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9998887432 2344 467888999999999999999999987 3333567899999999999999999999999999
Q ss_pred cCCCCh
Q 038890 471 LDPLNH 476 (569)
Q Consensus 471 ~~p~~~ 476 (569)
..|.-.
T Consensus 458 ~~P~m~ 463 (478)
T KOG1129|consen 458 VMPDMA 463 (478)
T ss_pred hCcccc
Confidence 988743
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=6e-09 Score=106.60 Aligned_cols=257 Identities=13% Similarity=-0.028 Sum_probs=181.9
Q ss_pred ChhHHHHHHHHHHh-----CCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHH---------ccCCHHHHHHHHH
Q 038890 233 NIFSWNSIITGFVQ-----GGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACA---------YLGAIDHGKWVHG 297 (569)
Q Consensus 233 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~ 297 (569)
+...|...+.+-.. .+.+++|...|++..+ ..|+ ...+..+..++. ..+++++|...++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 34445555554321 2346789999999873 2343 445555554443 2345889999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
++.+.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~ 405 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTR 405 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 998876 66778888888999999999999999998764 3 4667888899999999999999999999885 4443
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHH
Q 038890 375 -VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF-VWGALLG 450 (569)
Q Consensus 375 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~ 450 (569)
..+..++..+...|++++|...++++.+.. +| ++..+..+..++...|++++|...+.++ ...|+.. ..+.+..
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 233334445666899999999999887443 34 4556778888999999999999999988 4555544 4445555
Q ss_pred HHHhcCCHHHHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 GCQMHGNVELGEKVAQYLIDL---DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...| +.|...++.+.+. .+.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 566666 4777777776653 3444433 44556667777777766 7776654
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=9.9e-08 Score=93.96 Aligned_cols=403 Identities=14% Similarity=0.127 Sum_probs=262.2
Q ss_pred CCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC
Q 038890 55 PCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131 (569)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~ 131 (569)
.+..++ .+|..|.-+...+ |+++.+-+.|++... .....|+.+-..+...|... .|+.+++.-...
T Consensus 318 ~~qnd~---ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s------~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 318 KFQNDA---AIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDS------KAVNLLRESLKK 386 (799)
T ss_pred hhcchH---HHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccch------HHHHHHHhhccc
Confidence 455677 8999999999999 999999999998774 34577888888899999988 999999887764
Q ss_pred CCCCCcccHHHHH-HHHH-ccCCcHHHHHHHHHHHHh--CC--CCcHhHHHHHHHHHHhcC-----------CHHHHHHH
Q 038890 132 GISPDCLTFPFLL-KECT-KRLDGLVGASVYGQVVKF--GV--CDDVFVQNSVISLFMACG-----------FVTSARML 194 (569)
Q Consensus 132 g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~g-----------~~~~A~~~ 194 (569)
.-.|+..+-..++ +.|. +.+..+++.++-.++++. +. ......|..+.-+|...- ...++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 3224444433333 4454 457888888887777762 21 123445555555554321 23456677
Q ss_pred HhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccC
Q 038890 195 FDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEE 267 (569)
Q Consensus 195 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (569)
+++..+ .|..+...+.--|+..++.+.|.+...+..+ .+...|..|.-.+...+++.+|+.+.+.... +.
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~---E~ 543 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE---EF 543 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---Hh
Confidence 777754 3333333344557778899999988877653 4677899999999999999999999988753 11
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH---------------------hCC-------CCcchhHHHHHHHHH
Q 038890 268 MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR---------------------SGL-------DCDVVIGTALVDMYG 319 (569)
Q Consensus 268 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~ 319 (569)
| -|......-+..-...++.+++......+.. .|. .....++..+.....
T Consensus 544 ~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 G--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred h--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 1 1111111111111223333333332222211 010 011222222222111
Q ss_pred hcC---ChHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038890 320 KCG---CVERAYGVFKEMPKKD------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 320 ~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
..+ ..+..+..+.....++ ...|......+.+.++.++|...+.+.... .+-....|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 111 1111111111111222 234666677788889999999888877664 233456677777778889999
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER--LIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++|.+.|....... +.++.+..++..++.+.|+..-|.. ++.++ .+.| +...|..+...+.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999998887533 4457888999999999998887777 88888 6666 67899999999999999999999999
Q ss_pred HHhhcCCCCh
Q 038890 467 YLIDLDPLNH 476 (569)
Q Consensus 467 ~~~~~~p~~~ 476 (569)
.+.++++.+|
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999887765
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=3.3e-08 Score=96.51 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhc----C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVY----L-VEPH-VYHYACMIDILSRAGLFSEAERLIRSM--------PMEP 440 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p 440 (569)
.+++.|...|...|++++|.++++++.... + ..+. ...++.+...|.+.+...+|.++|.+. +..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 356666666666777777766666655322 1 1111 345566777777777777777766665 3345
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 441 DV-FVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 441 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+. .+|..|...|...|+++.|+++.+.+..
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 54 5899999999999999999999988764
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=3e-07 Score=88.85 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCCHhHH--HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 407 EPHVYHY--ACMIDILSRAGLFSEAERLIRSM-PMEPDVF-VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 407 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+|....| -.++..+-+.|+++.|..+++.. +-.|+.. .|..=.+.+...|++++|..+++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555444 45677788888999998888887 6566654 454555667788899999999999888887665444466
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
+.-..++++.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 6777788888888888888877765
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=8.9e-09 Score=105.38 Aligned_cols=228 Identities=11% Similarity=-0.061 Sum_probs=171.9
Q ss_pred ccHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHH---------hcCChHHHHHHHhhCCC
Q 038890 271 PDKITIASVLSACA-----YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYG---------KCGCVERAYGVFKEMPK 336 (569)
Q Consensus 271 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 336 (569)
.+...|...+++.. ..+++++|...+++..+.. |.+...+..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34555555555532 1235678999999998764 344556666655544 23458899999998765
Q ss_pred ---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhH
Q 038890 337 ---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-VYH 412 (569)
Q Consensus 337 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 412 (569)
.+...+..+...+...|++++|+..|++..+.+ +.+...+..+..++...|++++|...++...+.. |+ ...
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~ 408 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAA 408 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhh
Confidence 366788888888999999999999999999853 2245677888889999999999999999998643 43 333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM--PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+..++..+...|++++|+..+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 344455577789999999999887 22354 445677788888999999999999999888888888888888888888
Q ss_pred CChHHHHHHHHHHHHC
Q 038890 490 GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 g~~~~A~~~~~~m~~~ 505 (569)
| ++|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888888877543
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=1.2e-06 Score=84.76 Aligned_cols=438 Identities=13% Similarity=0.039 Sum_probs=256.1
Q ss_pred hhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCC
Q 038890 37 ECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSET 113 (569)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 113 (569)
..+.+...+...+.+++..+.... +.....-.+... |+.++|......-.+ .+.+.|..+.-.+-...++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 346677777777777774333333 333333333444 888999988887665 45678888877666667777
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 038890 114 NDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 114 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 192 (569)
+|+..|..... +.||.. .+.-+--.-++.|+++........+.+..+. ....|..++.++.-.|+...|.
T Consensus 93 ------eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 93 ------EAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred ------HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 456554 4443433346778888888888888776533 5567778888888889999888
Q ss_pred HHHhhcCC-----CChhHHHH------HHHHHHhcCCHHHHHHHHHhcCCC--ChhH-HHHHHHHHHhCCChHHHHHHHH
Q 038890 193 MLFDEMSN-----RDVVSWNA------MIIGYLRSGDLDVALDLFRRMKKR--NIFS-WNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 193 ~~~~~~~~-----~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
.+++...+ ++...+.. ........|..+.|.+.+...... |-.. -..-...+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88776654 34433322 234456688888888887766542 2222 2344567888899999999999
Q ss_pred HchhccccCCCCccHHHHHHHHHHHH-ccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHHHHhcCC-hHHHHHHHhhCC
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACA-YLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDMYGKCGC-VERAYGVFKEMP 335 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 335 (569)
.++. ..||..-|...+..+. +..+.-++. .+|....+. .|.......+--....... .+..-.++....
T Consensus 244 ~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 8873 2466666655544333 233333333 555554432 1111110111000111111 222222333322
Q ss_pred CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHH----CC----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHH
Q 038890 336 KK-DTLAWTAMISVFALNGYGKEAFDTFREMEA----EG----------VRPNH--VTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 336 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
+. -+.++..+.+.|-.....+-..++...+.. .| -+|.. .|+..++..+-..|+++.|..+++
T Consensus 316 ~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 316 SKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred hcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22 223334444333222222111111111111 11 13444 355566777888899999998888
Q ss_pred HhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-
Q 038890 399 MMRHVYLVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL- 474 (569)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 474 (569)
... .+ .|+ +..|..-.+.+...|++++|..++++. .+ .||...-..-..-..+.++.++|.+++....+.+-.
T Consensus 396 ~AI-dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 396 LAI-DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHh-cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 888 33 354 356666678888889999999988888 33 345444435555566788888888888877664421
Q ss_pred --C------hhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 475 --N------HAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 475 --~------~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
+ ..+...=+.+|.+.|++.+|++=|.
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 1 1112233567778887777765433
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=5.2e-09 Score=88.04 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+...+..+|...|+...|..-+++.++. .|+ ..++..+...|.+.|+.+.|.+-|+...... +.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 3455677888889999999999888875 344 4678888888889999999999998888543 4556788888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 420 LSRAGLFSEAERLIRSMPMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
+|..|++++|...|++.-..| -..+|..+..+..+.|+++.|...|++..+.+|..+.....+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 899999999999998882222 2457888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 038890 496 KKTRNLMKERGI 507 (569)
Q Consensus 496 ~~~~~~m~~~g~ 507 (569)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877765
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.4e-10 Score=75.62 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888864
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.8e-07 Score=82.51 Aligned_cols=404 Identities=11% Similarity=0.014 Sum_probs=190.2
Q ss_pred CChhHHHHHhhcCCC------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038890 79 GSLSYATNVFSHIKR------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLD 152 (569)
Q Consensus 79 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 152 (569)
.++..|..+++.-.. .++..| +...+.+-|+++ +|+..|.-+.+.. .|+......|.-...-.|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~------~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYE------EALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHH------HHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 455566655554331 122233 223455667777 7777777776643 3444444444444445566
Q ss_pred cHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038890 153 GLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 153 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 231 (569)
+.+|..+-... +.++..-..+...-.+.|+-++-..+-..+... ..--.++....-..-.+++|++++.++..
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666654332 112223333444455566655555544444331 12223344444444556777777777664
Q ss_pred -CChhHHHHH-HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHH--------------
Q 038890 232 -RNIFSWNSI-ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWV-------------- 295 (569)
Q Consensus 232 -~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-------------- 295 (569)
|+....|.- .-+|.+..-++-+.++++-.++ .++.++...+..+....+.=+-..|..-
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-----q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-----QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-----hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 333334433 3355666666666666655542 1222233333322222221111111111
Q ss_pred HHHHHHhCC------------CC-----cchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC-----
Q 038890 296 HGYLRRSGL------------DC-----DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNG----- 353 (569)
Q Consensus 296 ~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 353 (569)
.+.+.+.++ -| -+.....|+-.|.+.+++.+|..+.+++...++.-|-.-...++..|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 111111110 00 01122234445677777777777777776555544433333333333
Q ss_pred --ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 354 --YGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 354 --~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
+..-|.+.|.-.-+.+..-|. ..--++..++.-..+++..+.++..+.. +-...|. .--.+..+++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHH
Confidence 233444444433333322221 1122233344444566666666666663 3222222 2234566667777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcC-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 431 RLIRSM-PME-PDVFVWGAL-LGGCQMHGNVELGEKVAQYLIDLD-PLN-HAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 431 ~~~~~~-~~~-p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++|-.+ +-+ .|..+|.++ .++|.+.+.++.|..++ ++.+ |.+ ......++.-|.+++.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 776666 211 244444443 34455666666655443 3322 221 223344555666667666666666666554
Q ss_pred CC
Q 038890 506 GI 507 (569)
Q Consensus 506 g~ 507 (569)
..
T Consensus 491 DP 492 (557)
T KOG3785|consen 491 DP 492 (557)
T ss_pred CC
Confidence 43
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=2.1e-07 Score=82.90 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhCC
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMI---IGYLRSGDLDVALDLFRRMKKRNIFSWNSI---ITGFVQGG 248 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g 248 (569)
.--+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-|.+..+..+..+.+- ...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 334666777788888888888888887776666654 357777888888877777764332222222 34678888
Q ss_pred ChHHHHHHHHHchhccccCCCCccHH----------HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKI----------TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.+++|..-|+.+++.....+...+.. .....+..+...|+...++.....+.+.. +.+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888888888874432222221111 12233455667888999999888888764 67788888888999
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----HHHH---------HH
Q 038890 319 GKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT----FVGL---------LS 382 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l---------l~ 382 (569)
...|++..|+.-++...+ .+...+.-+-..+...|+.+.++...++.++ +.||... |..| +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999887766543 4667777777788888999999988888877 4666532 2111 11
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMH 455 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 455 (569)
.....+++.++....+...+. .|. ...+..+-.++...|++.+|++...+. .+.|| ..++.--..+|.--
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 223445666666666666532 233 123345556677778888888887777 66665 66777777778777
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..++.|+.-|+.+.+.++++..+-.
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHH
Confidence 8888888888888888887765443
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-06 Score=79.16 Aligned_cols=283 Identities=11% Similarity=0.035 Sum_probs=209.3
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKIT-IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
.|+.....+...+...|+.++|+..|++.+. +.|+..+ .....-.+...|+.+....+...+.... ..+...
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 4777889999999999999999999999762 3344322 2222333467888888888877776543 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 386 (569)
|..-+.......++..|+.+-++..+.+ ...+-.-...+...|+.++|.-.|+..... .| +...|..|+.+|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHh
Confidence 3333444556678999999988877644 444544456788889999999999987763 43 56899999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMI-DILS-RAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 462 (569)
.|.+.+|...-+...+.. +.+..+.+.+. ..+. ....-++|..+++.. .+.|+- ...+.+...|...|..+.++
T Consensus 381 ~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999999988877776544 45566665553 3322 223457899999887 778875 46777888899999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHH
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLI 542 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (569)
.++++.....|+. .....|++.+...+.+.+|.+.|...... +|+.+..++-
T Consensus 459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---------------------------dP~~~~sl~G 510 (564)
T KOG1174|consen 459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ---------------------------DPKSKRTLRG 510 (564)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------------------CccchHHHHH
Confidence 9999999988874 57889999999999999999999876542 3355677778
Q ss_pred HHHHHHHHHhC
Q 038890 543 LNGLSKIMKNG 553 (569)
Q Consensus 543 ~~~l~~~~~~~ 553 (569)
+.++.++|++.
T Consensus 511 l~~lEK~~~~~ 521 (564)
T KOG1174|consen 511 LRLLEKSDDES 521 (564)
T ss_pred HHHHHhccCCC
Confidence 88888888743
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.7e-10 Score=75.21 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY 285 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~ 285 (569)
||+.+||.+|++|++.|++++|.++|++|. ..|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~----~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK----KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHcC
Confidence 567777777777777777777777777777 66777777777777777653
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=8.2e-08 Score=89.87 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=142.5
Q ss_pred CChHHHHHHHHHchhccccCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPD--KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
+..+.++.-+.+++.. ....|+ ...|..+...+...|++++|...|++..+.. +.+...++.+...+...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~---~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILAS---RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHcc---ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4556666666666521 112222 3456666677778888888888888887765 556778888888888888888
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK--K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|...|+...+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888887754 2 4567777888888889999999999888874 44433222222234456788999988876553
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSE--AERLIRSM-PM----EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.. +|+...+ .+.. ...|+... +.+.+.+. .. .| ....|..+...+...|++++|+..|+++.+.+|+
T Consensus 194 ~~--~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL--DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC--CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22 3332222 2222 23444433 33333222 11 12 2357888899999999999999999999999975
Q ss_pred Ch
Q 038890 475 NH 476 (569)
Q Consensus 475 ~~ 476 (569)
+.
T Consensus 269 ~~ 270 (296)
T PRK11189 269 NF 270 (296)
T ss_pred hH
Confidence 43
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.7e-06 Score=86.33 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=148.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--CcchhHHHH---------------------------HHHHHhc
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD--CDVVIGTAL---------------------------VDMYGKC 321 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l---------------------------~~~~~~~ 321 (569)
-|+...+..+.++...+-+.+-.++++++.-.+-. .+...-+.| .......
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 35555666677777778888888888876643211 111112222 2233344
Q ss_pred CChHHHHHHHhhCCC-------------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 322 GCVERAYGVFKEMPK-------------------------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
+-+++|..+|++... ..+..|..+..+-.+.|...+|++-|-+. -|...
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 557778888776542 14567999999999999999998887543 26678
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 456 (569)
|.-++..+.+.|.+++-.+++...+++. -.|.+ -+.|+-+|.+.++..+.++++. -||......+..-|...|
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKV-REPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhh
Confidence 9999999999999999999998887443 24444 4579999999999988877765 478888888888899999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.++.|.-+|.. ...|..|+..+...|.+..|...-++
T Consensus 1209 ~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1209 MYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888877765 34566777777777777776654443
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5e-07 Score=79.00 Aligned_cols=386 Identities=12% Similarity=0.047 Sum_probs=234.7
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH-
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN- 176 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 176 (569)
+.+.+..+.+..++. .|++++..-.++. | +....+.|..+|....++..|...|+++-..- |...-|.
T Consensus 13 ftaviy~lI~d~ry~------DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYA------DAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHhhHH------HHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH
Confidence 556666667777777 9999998888754 5 55666777777888899999999999987754 3332222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHH--HHhcCCHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHH
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMIIG--YLRSGDLDVALDLFRRMK-KRNIFSWNSIITGFVQGGRARE 252 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 252 (569)
--...+.+.+.+.+|+++...|.. ++...-..-+.+ .-..+|+..+..++++.+ +.+..+.+.......+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 123445678899999999988877 333222222222 335789999999999998 4667777778888889999999
Q ss_pred HHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcch---------------------hH
Q 038890 253 ALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVV---------------------IG 311 (569)
Q Consensus 253 a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~ 311 (569)
|++-|+...+ ..|..| ...|+..+ +..+.++.+.|.+...++.++|+...+. .-
T Consensus 163 AvqkFqaAlq---vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQ---VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHh---hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999874 444444 34565544 4567789999999999998877542211 01
Q ss_pred HHHH-------HHHHhcCChHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 312 TALV-------DMYGKCGCVERAYGVFKEMPKK-----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 312 ~~l~-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
..++ ..+.+.|+++.|.+.+-.|+.+ |++|...+.-.-. .+++.+..+-+.-+.+.+. -...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 1222 2345778888888888888753 6666555433222 2444444444454555433 23567777
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCC-CCHhHHHHHHHHHH-HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVE-PHVYHYACMIDILS-RAGLFSEAERLIRSMPMEPDVFVWGALLGGC-QMHG 456 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~~ 456 (569)
++-.||+..-++.|-.++.+-.. .... .+...|+ |+++++ ..-..++|.+-++...-......-...+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888777755431 1111 2233333 333333 3345566655444431000000000111110 1111
Q ss_pred CHH----HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 457 NVE----LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 457 ~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+-+ .+++-+++..+.. ..+....++.|.+..++..+.++|+.-.+.-
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 211 1222222322222 2245566677888899999999998776543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=3e-08 Score=92.76 Aligned_cols=212 Identities=13% Similarity=0.059 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCc--chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHH
Q 038890 287 GAIDHGKWVHGYLRRSG-LDCD--VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFD 360 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 360 (569)
+..+.+..-+.++.... ..|+ ...+..+...|...|++++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 1222 35577888899999999999999998764 367889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 038890 361 TFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--P 437 (569)
Q Consensus 361 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 437 (569)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999874 454 5677888888899999999999999998543 43322222223345678899999999765 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLI-------DLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
..|+...+ . ......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+.
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33433222 2 222345555443 2444444 34466678899999999999999999999999987653
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=1.3e-07 Score=93.71 Aligned_cols=255 Identities=14% Similarity=0.101 Sum_probs=148.0
Q ss_pred HHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc--
Q 038890 244 FVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC-- 321 (569)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 321 (569)
+...|++++|++.+..-. ..+......+......+.+.|+.++|..+|..+.+.+ |.+..-|..+..+....
T Consensus 14 l~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345555555555554431 1122223333444455555555555555555555554 33333333333333111
Q ss_pred ---CChHHHHHHHhhCCCCCh--hHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 322 ---GCVERAYGVFKEMPKKDT--LAWTAMISVFALNGYG-KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 322 ---g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.+.+...++|+++...-+ .....+.-.+.....+ ..+...+..+...|+++ +|..+-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 134444555554433111 1111111111111112 23445556666666543 33334344444444444444
Q ss_pred HHHHhHHhc-------------CCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 038890 396 CFVMMRHVY-------------LVEPHVY--HYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNV 458 (569)
Q Consensus 396 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 458 (569)
++....... .-+|... ++..+...|-..|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 544443221 1134443 4466678888999999999999987 66675 56788888889999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 459 ELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 459 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+|.+.++.++++++.|...-+-.+..+.++|++++|.+++......+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999999999888888888899999999999999998877665
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=1.6e-07 Score=79.23 Aligned_cols=197 Identities=11% Similarity=0.022 Sum_probs=115.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 038890 278 SVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGY 354 (569)
Q Consensus 278 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 354 (569)
.+.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 33444555555555555555555543 34445555555556666666666666655432 244455555555666666
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 038890 355 GKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLI 433 (569)
Q Consensus 355 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (569)
+++|...|++......-|. ..+|..+.-|..+.|+.+.|...|++..+.. +........+.......|++..|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666665432222 2456666666666677777777776666432 233445556666666677777777666
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 434 RSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 434 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
+.. +..++...+...|..-...||.+.+.++=.++.+..|.+..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 666 33466666666666666677777777766666666666543
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=96.89 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=168.3
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFD 360 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (569)
.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- +......|...|...|.-..|..
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56677777777777777665 566777888888888777777777777766543 55666677777888888888888
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 361 TFREMEAEGVR-----P---NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 361 ~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
.|+..+....+ + +...-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|++++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887654211 0 0000000 122223344556677777776776668888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 433 IRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 433 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
|+.+ .++| |..+||.|...++...+.++|+..|.+++++.|.-.++...|+-.|...|.|++|.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9998 7777 56799999999999999999999999999999999999999999999999999999988776543
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=7e-06 Score=78.90 Aligned_cols=116 Identities=9% Similarity=-0.043 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------hC-CCCCCHHHHHHHHHHHHhcCCHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR--------SM-PMEPDVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~~~~~ 459 (569)
.+..+..++....+.+. .....+...++......|+++.|++++. .. .+.-.+.+...+...+.+.++-+
T Consensus 356 ~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc
Confidence 46777777777764431 1124566677888899999999999998 33 33334455566777788888888
Q ss_pred HHHHHHHHHhhc----CCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 460 LGEKVAQYLIDL----DPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 460 ~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.|..++..++.. .+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 888888888762 2222 233455566667889999999999999763
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=9e-08 Score=88.19 Aligned_cols=249 Identities=11% Similarity=0.075 Sum_probs=155.5
Q ss_pred HHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC
Q 038890 213 YLRSGDLDVALDLFRRMKKR----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA 288 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 288 (569)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++. . +-.|.......+...+...++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~----~-~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK----K-SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-----T-TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc----c-CCChhHHHHHHHHHHHhCccc
Confidence 334566666665444 2111 1223445667777778766544 3332 2 225666666555555544444
Q ss_pred HHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLD-CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
-+.+..-++........ .+..+.......+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444433333222 23333333445566778888888888765 5566677788888999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C
Q 038890 368 EGVRPNHVTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-D 441 (569)
Q Consensus 368 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 441 (569)
. ..| .+...+..++.. .+.+..|..+|+++...+ ++++.+.+.+..+....|++++|.+++.+. ...| +
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4 333 344445554432 346889999999987544 578888888889999999999999988887 4444 5
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCChh
Q 038890 442 VFVWGALLGGCQMHGNV-ELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 477 (569)
..++..++.+....|+. +.+.+++.++....|.++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 56777777777777777 7788888888888888764
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.2e-06 Score=81.40 Aligned_cols=236 Identities=10% Similarity=0.001 Sum_probs=157.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH-----
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG----- 311 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 311 (569)
...+.+...+..+++.|.+-+.... .. .-+..-++....+|...|.+..+........+.|- ....-+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~----el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKAL----EL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH----hH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHH
Confidence 5567777888888888888888876 22 24444456666778888888877777766665542 111222
Q ss_pred --HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC
Q 038890 312 --TALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSG 388 (569)
Q Consensus 312 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 388 (569)
..+..+|.+.++++.+...|.+...+... -....+....+++....+...- +.|.. .-...-...+.+.|
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 22344666777888888888775432111 1112223344445444444333 22332 12222255678889
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++..|...|.++.+.. +.|...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++.-..+++.|.+.|+
T Consensus 373 dy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988554 667889999999999999999998877776 44554 3455555666667778999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHH
Q 038890 467 YLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 467 ~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+..+.+|.+..+...+.+++..
T Consensus 451 eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 9999999988877777776665
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7e-07 Score=84.66 Aligned_cols=372 Identities=12% Similarity=0.056 Sum_probs=228.3
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHhcCCHHHHH
Q 038890 114 NDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDD-VFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 114 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 192 (569)
..++.+.|+.+|.+.+.-. ++|...|+.-..+++..|+++.|.+=-..-++.. |+ ...|+....++.-.|++++|.
T Consensus 14 s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHH
Confidence 3567888899998888743 2366677788888888899888877666666654 44 456777888888888999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHH-HHHHH------hcC-CC------ChhHHHHHHHHHHhC--------
Q 038890 193 MLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVA-LDLFR------RMK-KR------NIFSWNSIITGFVQG-------- 247 (569)
Q Consensus 193 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A-~~~~~------~~~-~~------~~~~~~~l~~~~~~~-------- 247 (569)
..|.+-.+ | +...++-+..++. .+.+ .+.|. ... .| ....|..++..+-+.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 98888776 3 3345555665551 1111 11111 000 00 111233333322211
Q ss_pred --CChHHHHHHHHHch-----hccc---cCCCCc------------c----------HHHHHHHHHHHHccCCHHHHHHH
Q 038890 248 --GRAREALELFQEMQ-----SSSV---EEMVKP------------D----------KITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 248 --g~~~~a~~~~~~m~-----~~~~---~~~~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
.+...+...+.... ..+. ..+..| | ..-...+.++..+..++..+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11122222221110 0000 001111 0 01234455566666777777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHH-------HHHHHHHcCChhHHHHHHHHH
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL---AWTA-------MISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~-------li~~~~~~g~~~~A~~~~~~m 365 (569)
+....... -+..-++....+|...|.+..+...-....+.... -|+. +..++.+.++++.|+..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77776654 45555666777778888777777666654443211 1222 233555567778888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DV 442 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 442 (569)
......|+.. .+....+++....+...- +.|.. .-...-...+.+.|++..|+..|.++ ...| |.
T Consensus 325 Lte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 5543333221 122333444443333321 22332 11222356678999999999999999 4456 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|....-+|.+.|.+..|+.-.+..++++|+....|..=+.++.-..+|++|.+.|.+..+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999876644
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=3.3e-06 Score=82.82 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=58.6
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
.....|.+|..+++.+.+.. .-..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 33445555555555444432 122234444455555555555555554322 23334455555555555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 364 EMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+.. |.......|..-..-+-..|++.+|.+++-.+. .|+. .|..|-+.|..+..+.+..+.
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 332 122222333333333444455555544443332 2322 234444555555555444443
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=4.4e-06 Score=83.03 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred hcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-------------CC-cccHHHHH
Q 038890 38 CKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR-------------SD-LYTYNIMI 103 (569)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-------------~~-~~~~~~li 103 (569)
-|+++.|-+..+-+... .++..+.+++.+. .+.+-|.-.+-.|.+ ++ ...--+.+
T Consensus 741 iG~MD~AfksI~~IkS~---------~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKSD---------SVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhhh---------HHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 36777776666655543 6888889998888 888877777766652 21 11222222
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFM 183 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 183 (569)
...-|..+ +|..+|.+..+. ..|=+.|...|.+++|.++-+.--+.-+ ..+|.....-+-
T Consensus 810 --AieLgMlE------eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 810 --AIELGMLE------EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLE 869 (1416)
T ss_pred --HHHHhhHH------HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHH
Confidence 24455555 888888887763 3344556677888888777553322111 234444555566
Q ss_pred hcCCHHHHHHHHhhcCC-----------------------CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 038890 184 ACGFVTSARMLFDEMSN-----------------------RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------- 231 (569)
Q Consensus 184 ~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 231 (569)
..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 67788888888776532 3445555566666678888888888876642
Q ss_pred ---------------CChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 232 ---------------RNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 232 ---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.|......|.+.|-..|++.+|...|.+.+
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233445566677777777777777776654
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=5.2e-06 Score=82.57 Aligned_cols=256 Identities=12% Similarity=0.056 Sum_probs=158.2
Q ss_pred HHHHHHHH--HhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC-CC-------
Q 038890 64 SLITRLLF--FCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT-GI------- 133 (569)
Q Consensus 64 ~~~~~l~~--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~-g~------- 133 (569)
.+-..++. +|.-- |+.+.|.+-.+.++ +...|..|.+.|.+.++.+ -|.-.+-.|... |.
T Consensus 727 ~TRkaml~FSfyvti--G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLD------VAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTI--GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLD------VAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred HHHHhhhceeEEEEe--ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhcccc------HHHHhhhhhhhhhhHHHHHHHH
Confidence 45555554 45556 99999988777764 5678999999999998888 776666666432 10
Q ss_pred -CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHH
Q 038890 134 -SPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMII 211 (569)
Q Consensus 134 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~ 211 (569)
.|+ .+=..+.-.....|-+++|+.+|++.++.+ .|=+.|-..|.+++|.++-+.=.. .=..||.....
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 122 122222222346677888888887776532 334556677888888877554322 12235666666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH
Q 038890 212 GYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH 291 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 291 (569)
.+-..+|.+.|++.|++...+--..+..|.. ++.....+.+.+ -|...|......+-..|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~----------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRK----------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhc----------cchHHHHHHHHHHhcccchHH
Confidence 6667778888888887765443333322221 222223333333 233555556666667777888
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|+.+|..+++ |-++++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+..
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8777776654 345666667777777777776542 355556667777777778777777777543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=4e-08 Score=90.53 Aligned_cols=245 Identities=10% Similarity=0.048 Sum_probs=170.6
Q ss_pred HHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc
Q 038890 242 TGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC 321 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (569)
+-+.-.|++..++.-.+ .. ......+......+.+++...|+.+.+ +.++.... +|.......+...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~----~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK----SFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH----TSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh-cc----CCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCc
Confidence 44566799999987666 33 222234456667788899999987754 34444443 66666666666655554
Q ss_pred CChHHHHHHHhhCCC-C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 322 GCVERAYGVFKEMPK-K----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
++-+.+..-+++... + +..........+...|++++|++++... .+.......+..+.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 566677766655442 2 2222222234456679999999988642 3567777788999999999999999
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILS----RAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
++.+.+ . ..|. +...+..++. -.+.+.+|..+|+++ ...+++.+++.+..++...|++++|++++.++.+
T Consensus 154 l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQ-I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHC-C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHh-c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999984 2 3343 3334444433 234689999999999 5567889999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 038890 471 LDPLNHAFYVNLCDMYAKAGRF-DDVKKTRNLMKER 505 (569)
Q Consensus 471 ~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 505 (569)
.+|.++.++.+++.+....|+. +.+.+++.++...
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999999988 6677888888764
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=4.9e-07 Score=78.65 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=117.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL 425 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (569)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 3457778888776555433221 11 01223667778888888877554 6788999999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGC-QMHGN--VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..++..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998 5556 666777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 038890 501 LMKERGI 507 (569)
Q Consensus 501 ~m~~~g~ 507 (569)
++.+..-
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=5e-06 Score=80.90 Aligned_cols=194 Identities=12% Similarity=-0.011 Sum_probs=96.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHc
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGV-RPNH--VTFVGLLSACAH 386 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~ 386 (569)
.+...+...|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 334445555555555555555432 1234445555555556666666666655554311 1121 223345555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHH-H--HHHHHHHHcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHY-A--CMIDILSRAGLFSEAER------LIRSM-PMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~l~~~~~~~~ 456 (569)
.|++++|..+++.........+..... + .++.-+...|....+.. ..... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 666666666666654211101111111 1 12222222332221111 11111 10111222234556677888
Q ss_pred CHHHHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 457 NVELGEKVAQYLIDLDPL---------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.+.|...++.+....-. ........+.++.+.|++++|.+.+......+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888887652211 23334556667889999999999999887654
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=7.8e-06 Score=79.56 Aligned_cols=192 Identities=12% Similarity=0.010 Sum_probs=90.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC-----C--hhHHHHHHHHH
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK-----D--TLAWTAMISVF 349 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~li~~~ 349 (569)
..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++.... + ...|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 334444555555555555555555543 333444555555555666666666655554431 1 11233455556
Q ss_pred HHcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHccCCHHHHHHH---HHHhHHh-cCCCCCHhHHHHHHHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGV-RPNHVTF-V--GLLSACAHSGLVEKGRWC---FVMMRHV-YLVEPHVYHYACMIDILS 421 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~ 421 (569)
...|++++|+.++++...... .+..... + .++.-+...|....+..+ ....... .+ ............++.
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 275 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALA 275 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHh
Confidence 666666666666666543211 1111111 1 122222233322222222 1111100 00 011111124555666
Q ss_pred HcCCHHHHHHHHHhC--CCCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 422 RAGLFSEAERLIRSM--PMEP---D------VFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~--~~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
..|+.+.|...++.+ .... . .........++...|+.+.|.+.+..+..
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777766 0011 1 11122222335678888888888887765
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.4e-05 Score=88.36 Aligned_cols=326 Identities=10% Similarity=-0.006 Sum_probs=211.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----C--h--hHHHHHHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----R----N--I--FSWNSIITGF 244 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~ 244 (569)
.....|+++.+...++.+.. .+..........+...|++++|..++..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556788887777777642 2333334455566778999999988876531 1 1 1 1222334556
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CC--cchhHHHHHHHH
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL---DC--DVVIGTALVDMY 318 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 318 (569)
...|++++|...+++..... ..+..+ .....+.+...+...|+++.|...+.+.....- .+ .......+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 78999999999999876310 111000 113345566667889999999999888765311 11 123445667788
Q ss_pred HhcCChHHHHHHHhhCCC-------CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 038890 319 GKCGCVERAYGVFKEMPK-------KD----TLAWTAMISVFALNGYGKEAFDTFREMEAE--GVRPN--HVTFVGLLSA 383 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~ 383 (569)
...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999998876542 11 123444556677789999999999887542 11122 2344455667
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHY-----ACMIDILSRAGLFSEAERLIRSMPM-E-PDV----FVWGALLGGC 452 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~ 452 (569)
....|+++.|...+........-......+ ...+..+...|+.+.|..++..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999988875421111111111 1122445668999999999877721 1 111 1234566778
Q ss_pred HhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 453 QMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
...|++++|...++++.+.. +....+...++.++.+.|+.++|...+.+..+..-
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 88999999999999988742 12335677888999999999999999999987653
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=5.6e-06 Score=84.15 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|...+....+ .+...|+.|.-. ...|++.-|...|-+-.... +-...+|..+.-.+....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554432 466677776655 55567766666666554432 22455777777778888899999999988874
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPDVFVWGALLGGCQMHGNVELGEKVAQ--------- 466 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------- 466 (569)
-. +.+...|-.........|+.-++..+|..- +-.|+...|..........|+.++-+...+
T Consensus 879 Ld--P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 LD--PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred cC--chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 22 345566666666666778888888877762 334555555555555556666655444333
Q ss_pred -HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 467 -YLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 467 -~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+.....|+...+|...+....+.+.+.+|.+...+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334456888888888888888888888888877665
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=8.2e-06 Score=80.19 Aligned_cols=261 Identities=13% Similarity=0.196 Sum_probs=175.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 209 MIIGYLRSGDLDVALDLFRRMKKRNIF--SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
.+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.- .++-.+..|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhcc
Confidence 345556688899999999988865544 36778889999999999999998753 345667789999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|+|+.|.++-.+. .|.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++.++-.
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 9999998876654 34345566677777778889999999999999888875 3677888899998888877643
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----
Q 038890 367 AEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDV---- 442 (569)
Q Consensus 367 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---- 442 (569)
... -..|...+..-+...|+...|...|-+..+ |.+-+..|...+.|++|..+-+.-|-. |.
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~-n~~k~v 943 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHV 943 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHH
Confidence 211 124556666777788888888877765542 455666777777777777766654211 11
Q ss_pred -HHH-------------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 443 -FVW-------------------GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 443 -~~~-------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
..| ..-+...+..+.++-|.++-+-..+.. .+.+...++..+...|++++|-+-+-+.
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHH
Confidence 111 111111233444444444444333322 2345566777778889999987766555
Q ss_pred HHC
Q 038890 503 KER 505 (569)
Q Consensus 503 ~~~ 505 (569)
.+.
T Consensus 1022 ikl 1024 (1636)
T KOG3616|consen 1022 IKL 1024 (1636)
T ss_pred hhc
Confidence 443
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=1.7e-05 Score=71.14 Aligned_cols=345 Identities=10% Similarity=0.008 Sum_probs=225.4
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH-HHHHHHHHH
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVS-WNAMIIGYL 214 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~ 214 (569)
.-..-+.+.+...|++..|+.-|...++.++. +-.++-.-...|...|+-.-|+.-+.++.+ ||-.. -..-...+.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 33445566677778888888888777664322 222222344567778887777777777665 44321 112234567
Q ss_pred hcCCHHHHHHHHHhcCCCCh------h----------H--HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHH
Q 038890 215 RSGDLDVALDLFRRMKKRNI------F----------S--WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276 (569)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~~------~----------~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~ 276 (569)
+.|.++.|..-|+.+.+.++ . . ....+..+.-.|+...|+.....+++ -.+.|...+
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-----i~~Wda~l~ 192 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-----IQPWDASLR 192 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-----cCcchhHHH
Confidence 88888888888888764211 1 1 12234456778999999999998863 236788888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh------HHHHH-----
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL------AWTAM----- 345 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~l----- 345 (569)
..-..+|...|.+..|+.-++..-+.. ..+..++-.+...+...|+.+.++...++..+-|+. .|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 889999999999999998888877765 445556666778888899999999888887764322 22221
Q ss_pred ----HHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 346 ----ISVFALNGYGKEAFDTFREMEAEGVRPNHV---TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 346 ----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
+......++|.++++..+..++........ .+..+-.++...+++-+|++.-.+..... +.|+.++.--..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHH
Confidence 223455688999999988888754332222 33445566777899999999988887432 334888888899
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+|.-..+++.|+.-|+.. .+.++..-.. ...+.|.++.+..- ....|-.|+ --+...-.+..+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eGle~Akrlkkqs~-----kRDYYKILG--VkRnAsKqEI~K 413 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAR---------EGLERAKRLKKQSG-----KRDYYKILG--VKRNASKQEITK 413 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHhc-----cchHHHHhh--hcccccHHHHHH
Confidence 999999999999999988 5555432110 11223333222211 123444443 344556667778
Q ss_pred HHHHHHHCCC
Q 038890 498 TRNLMKERGI 507 (569)
Q Consensus 498 ~~~~m~~~g~ 507 (569)
.+++|..+-.
T Consensus 414 AYRKlAqkWH 423 (504)
T KOG0624|consen 414 AYRKLAQKWH 423 (504)
T ss_pred HHHHHHHhcC
Confidence 8888877654
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.2e-06 Score=76.62 Aligned_cols=304 Identities=14% Similarity=0.096 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHHHHHhC
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNS-IITGFVQG 247 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~ 247 (569)
-+++.+..+.+..++.+|.+++....++ +....+.+..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3556666667788888888887766652 445667777788888888888888888764 33333332 23566778
Q ss_pred CChHHHHHHHHHchhccccCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPDKITIASVLSA--CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
+.+..|+++...|. . .|+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++
T Consensus 92 ~i~ADALrV~~~~~----D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLL----D---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred cccHHHHHHHHHhc----C---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 88888888888775 2 1222221112222 234455555555555543221 2333333344445566666
Q ss_pred HHHHHHhhCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHccCCHHHHHHHH
Q 038890 326 RAYGVFKEMPKK----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA----CAHSGLVEKGRWCF 397 (569)
Q Consensus 326 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~ 397 (569)
.|.+-|+...+- +...|+..+ ++.+.|+++.|++...++.++|++-... +++-+.. -...|+. ..+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccch---HHHH
Confidence 666666655442 233444333 3334556666666666666655542111 1100000 0000000 0000
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
.. .-+..+|.-...+.+.|+++.|.+.+.+| ..+.|+.|+..+.-. -..+++....+-+.-+.+++|
T Consensus 237 ~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 237 QS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 00 00122333334456778888888888888 233466666554432 234556666677777777788
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 474 LNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 474 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
-.+.++..++-.|++..-++-|..++-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 7778888888888888888888776654
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=7.5e-07 Score=93.26 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=172.4
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
|.....|-..|......++.++|++++++.... -...|.+++..-..-|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 555677888899999999999999999887642 3457888888777788888999999998874 222456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DVFVWGALLGGC 452 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 452 (569)
|..|...|.+.+.+++|.++++.|.++++ -....|...+..+.+.++-+.|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999998886 66788999999999999999999999988 3333 344566667777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
++.|+.+++..+|+......|.....|+.+++.-.+.|+.+.++.+|+++...++.+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999999999999999999999999999999999999999999999988753
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=1.4e-06 Score=85.56 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=183.1
Q ss_pred CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 303 GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
+.+|-...-..+.+.+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666677788899999999999999999975 4788889999999999999999988777 4788999999988
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888998888776532 1122333334578999999999876 5555 56789999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELV 540 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (569)
|.+.|......+|++...|+++..+|.+.|+-.+|...+++..+.+..+ .--| . .+.--...-++.++++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iW---E----Nymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIW---E----NYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceee---e----chhhhhhhcccHHHHH
Confidence 9999999999999999999999999999999999999999998887442 2222 2 1222223455788999
Q ss_pred HHHHHHHHHHHhCCcccCccc
Q 038890 541 LILNGLSKIMKNGGFGQYIRG 561 (569)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~~~~ 561 (569)
+...++. .|+..+-.+++..
T Consensus 608 ~A~~rll-~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 608 KAYHRLL-DLRKKYKDDEVLL 627 (777)
T ss_pred HHHHHHH-HhhhhcccchhhH
Confidence 9988884 5666655555443
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=8.1e-07 Score=80.70 Aligned_cols=183 Identities=10% Similarity=-0.041 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCH-HHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DT---LAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PNH-VTFV 378 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~ 378 (569)
....+..++..+...|+++.|...|+++... +. .++..+..++...|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445566666777777777777777766532 11 34566667777777777777777777664221 111 1334
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038890 379 GLLSACAHS--------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLG 450 (569)
Q Consensus 379 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 450 (569)
.+..++... |+++.|...|+.+.+.+ +.+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 444444433 56667777777766433 122222222211100 00000 001124556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...|++++|...++.+.+..|.+ +.++..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999999987654 5789999999999999999999999886543
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00032 Score=71.94 Aligned_cols=350 Identities=14% Similarity=0.175 Sum_probs=170.9
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCccc-----HHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLT-----FPFLLKECTKRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 169 (569)
|+..-+..+.++...+-+. +-++++++.+-. |+..+ -+.|+-... .-+.....++.+++-..+.
T Consensus 983 dPe~vS~tVkAfMtadLp~------eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa- 1051 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPN------ELIELLEKIVLD---NSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDA- 1051 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcH------HHHHHHHHHhcC---CcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCc-
Confidence 4444455566666666666 666666666532 22221 122222222 2333444444444433221
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038890 170 DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 249 (569)
| .+...+...+-+++|..+|++..- +....+.|+. .-++.+.|.+.-++..+| ..|+.+..+-.+.|.
T Consensus 1052 ~------~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1052 P------DIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGL 1119 (1666)
T ss_pred h------hHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCc
Confidence 1 122333444455555555554321 1111111111 123444444444443332 234444444444555
Q ss_pred hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC------------------------
Q 038890 250 AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD------------------------ 305 (569)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 305 (569)
..+|.+-|-+. .|+..|..+++.+.+.|.+++-.+++..+++..-.
T Consensus 1120 v~dAieSyika----------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA----------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hHHHHHHHHhc----------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 54444444332 23344444455555555555444444444443322
Q ss_pred --CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 306 --CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 306 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
|+..-...+.+-|...|.++.|.-+|. ++.-|..+...+...|++..|.+.-++. .+..||..+-.+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 333333444444444444444444443 3445666777777777777777665542 256677777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLV--EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 459 (569)
|...+.+.-|. -.|+ -....-...++..|...|.+++.+.+++.. |.+. ....|..|.-.|++- +++
T Consensus 1259 Cvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~ 1329 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPE 1329 (1666)
T ss_pred HhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHH
Confidence 77766665443 2332 234455677888888889999988888876 5443 233455555555443 334
Q ss_pred HHHHHHHHHhh-cC-C------CChhHHHHHHHHHHHcCChHHHHH
Q 038890 460 LGEKVAQYLID-LD-P------LNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 460 ~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+..+.++-... .+ | +....|..+.-.|.+-..|+.|.-
T Consensus 1330 km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1330 KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 33333333222 11 1 123446666666666666665543
No 108
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1e-05 Score=75.71 Aligned_cols=213 Identities=9% Similarity=-0.041 Sum_probs=127.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--hHHH
Q 038890 286 LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYG--KEAF 359 (569)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~ 359 (569)
.+..++|..+..++.+.. +-+..+++....++...| ++++++..++++.+ .+..+|+.....+.+.|.. ++++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 344455555555554443 233334443334444444 35566666655443 2334455444444444442 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc---CC----HHHHHHH
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA---GL----FSEAERL 432 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 432 (569)
..++++.+...+ +..+|.....++...|+++++++.++++.+.. +-+...|+....++.+. |. .++++++
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777664322 45666666666777777777777777777543 34556666655555443 22 2456666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC----------------
Q 038890 433 IRSM-PMEP-DVFVWGALLGGCQMH----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG---------------- 490 (569)
Q Consensus 433 ~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 490 (569)
..++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.++..|++.|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 6444 4455 556777777777663 44567888888888888999999999999998642
Q ss_pred --ChHHHHHHHHHH
Q 038890 491 --RFDDVKKTRNLM 502 (569)
Q Consensus 491 --~~~~A~~~~~~m 502 (569)
..++|.++++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 346788888887
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1e-06 Score=72.42 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
.+|++..+ +.|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34454444 23332 3345556667777777777777766433 445667777777777777777777777777 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
.| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34 55667777777777777777777777777777777776666655443
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=6.1e-05 Score=83.23 Aligned_cols=261 Identities=10% Similarity=-0.020 Sum_probs=129.8
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCC-CCccHHHHHHHHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKK----RNI----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPDKITIASVLSAC 283 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~~~~~ll~~~ 283 (569)
+...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....-..+ ..+...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3455666666655554321 111 1233444455556666666666655532110111 122334455555556
Q ss_pred HccCCHHHHHHHHHHHHHh----CCC--C-cchhHHHHHHHHHhcCChHHHHHHHhhCCC------C--ChhHHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRS----GLD--C-DVVIGTALVDMYGKCGCVERAYGVFKEMPK------K--DTLAWTAMISV 348 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~ 348 (569)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 6666666666665554431 111 1 122233444555556666666666655422 1 12223334455
Q ss_pred HHHcCChhHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC--CHhHHHHHHHHH
Q 038890 349 FALNGYGKEAFDTFREMEAE----GVRPNHVTF--VGLLSACAHSGLVEKGRWCFVMMRHVYLVEP--HVYHYACMIDIL 420 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 420 (569)
+...|+.+.|...+.+.... +..+..... ...+..+...|+.+.|..++........-.+ ....+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 66667777777776665431 110000010 1112333446777777777665542110001 011134566667
Q ss_pred HHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 421 SRAGLFSEAERLIRSM-------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
...|++++|...+++. +..++ ..+...+..++...|+.++|...+.++.+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 7777777777777665 22221 23455556667777888888888887777553
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=1.6e-06 Score=71.36 Aligned_cols=107 Identities=12% Similarity=-0.057 Sum_probs=92.1
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555553 1344 3556788899999999999999998 5555 67799999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
|.++.++..++.++.+.|++++|...++......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997754
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.6e-06 Score=81.67 Aligned_cols=250 Identities=13% Similarity=0.027 Sum_probs=179.5
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
..-+.+.|++.+|.-.|+..++. -+-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq-----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ-----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh-----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 34567788888888888887632 24567778888888888888888888888888765 5567777778888888
Q ss_pred cCChHHHHHHHhhCCCCC-hhHHHHHH---------HHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCC
Q 038890 321 CGCVERAYGVFKEMPKKD-TLAWTAMI---------SVFALNGYGKEAFDTFREME-AEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.|.-..|...++.-.... ...|.... ..+..........++|-++. ..+..+|......|.-.|--.|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888888877653211 00000000 11111122334445555544 45545677777777777888999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
+++|...|+.+.... +-|..+||.|.-.+....+.++|++.|+++ .++|+- .....|.-.|...|.+.+|...|-.
T Consensus 446 fdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999998543 557789999999999999999999999999 888875 4777888899999999999999998
Q ss_pred HhhcCCC----------ChhHHHHHHHHHHHcCChHHHHHH
Q 038890 468 LIDLDPL----------NHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 468 ~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
++.+.+. +..+|..|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8875432 124677777777777776655443
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00011 Score=63.80 Aligned_cols=223 Identities=12% Similarity=0.018 Sum_probs=135.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
-+-++|...|.+.....-.. .+-.|....+..+.......++.+.-. .+.+.+.......+......-...
T Consensus 46 y~~raylAlg~~~~~~~eI~--------~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i 117 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIK--------EGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII 117 (299)
T ss_pred HHHHHHHHcccccccccccc--------cccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence 34456666665544332222 122344444444444444444433332 334444444333333333444556
Q ss_pred HHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEKG 393 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a 393 (569)
|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+- -+..|.+.|..++.+ .+.+..|
T Consensus 118 ~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 778888888888887733 3333333345566777888888888888763 255677766666543 4567888
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNV-ELGEKVAQYLID 470 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 470 (569)
.-+|+++.+++ +|++.+.+....++...|++++|..++++. ....++.++..++-.-...|.. +-..+.+.+++.
T Consensus 193 fyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88888887555 688888888888888888888888888887 4344666666666655555544 555677777777
Q ss_pred cCCCCh
Q 038890 471 LDPLNH 476 (569)
Q Consensus 471 ~~p~~~ 476 (569)
..|..+
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 777765
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.4e-05 Score=69.33 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...|.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHH
Confidence 44555666677777777666664432 12234455557777778888888888888877433 6777888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.|+++.|..-|.+. .+.| +....+.+.-.+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888877777 4444 455677777777888888888888888888777778888888888888888888877654
Q ss_pred H
Q 038890 501 L 501 (569)
Q Consensus 501 ~ 501 (569)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3.3e-05 Score=79.88 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLG 450 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 450 (569)
+...+..|.......|.+++|..+++.+.+.. +-+......++..+.+.+++++|+..+++. ...|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45555555555556666666666666555322 223344455555566666666666666555 33442 334445555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666665555566666666666666666666666665543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.8e-06 Score=82.66 Aligned_cols=220 Identities=10% Similarity=0.024 Sum_probs=173.7
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHH
Q 038890 269 VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMI 346 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 346 (569)
.+|--..-..+...+...|-...|..+++++. .+...+.+|+..|+..+|..+..+-.+ +++..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 44444445556677778888888888888764 456688899999999999998776554 5677777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 7766666678888887764322 22222233345789999999998877554 44567888899999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..|.+.|... ...|| ...|+.+-.+|.+.++-.+|...++++.+.+..+..+|.+......+.|.+++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999988 66775 469999999999999999999999999999988899999999999999999999999999865
Q ss_pred CC
Q 038890 505 RG 506 (569)
Q Consensus 505 ~g 506 (569)
..
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 43
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=3.1e-05 Score=78.97 Aligned_cols=175 Identities=12% Similarity=0.019 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 153 GLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 153 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
...|...|-+.++..+. =...|..|...|...-+...|.+.|++.-+ .+...+......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555444444322 234566677777777777777777777665 34556777777777777777777774433
Q ss_pred CCCCh-----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 230 KKRNI-----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 230 ~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
.+.+. ..|....-.|.+.++..+|..-|+...+. -+-|...|..+..+|...|.+..|.++|.++...+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 32211 12222333455666666666666665421 23455566666666666666666666666555432
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
|.+....-...-..+..|++.+|...+..+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112222122222344555666665555544
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.8e-05 Score=68.69 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 038890 371 RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGAL 448 (569)
Q Consensus 371 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 448 (569)
.|+......+-..+...|+-+....+.......+ +.+......++....+.|++..|+..+++. .-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4543333556677788888888888888766443 456667777999999999999999999999 556688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.-+|.+.|+++.|...|.++.++.|.++..+++++..|.-.|+++.|..++......+-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876654
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.7e-05 Score=68.99 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+..|...|+++.+....+.+..+. ..+...++.++++..++...+.. +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345667777766654443322221 01112566677888888777653 346778888889999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDIL-SRAGL--FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
..|+...+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++.
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988544 45778888888864 67777 59999999998 5555 66788888889999999999999999999
Q ss_pred hcCCCChhHH
Q 038890 470 DLDPLNHAFY 479 (569)
Q Consensus 470 ~~~p~~~~~~ 479 (569)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988765433
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.7e-07 Score=53.84 Aligned_cols=32 Identities=41% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
|+.||..+||+|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=3.5e-05 Score=81.36 Aligned_cols=219 Identities=13% Similarity=0.069 Sum_probs=160.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-hhHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN--------RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK-RN-IFSWNSI 240 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 240 (569)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456777778888888888888888888765 1234688888887778888888888888875 23 3467888
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-CDVVIGTALVDMYG 319 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 319 (569)
...|.+.+.+++|.++|+.|.+ .+.-....|...+..+.+.++-+.|..++.++.+.-.. -........+..-.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~K-----KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLK-----KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHH-----HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999864 23356677888888888888888888888888775311 13444555666677
Q ss_pred hcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHH
Q 038890 320 KCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~ 394 (569)
+.|+.+.+..+|+..... -...|+..+..-.+.|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888877642 4567888888888888888888999988888777654 35555555444555544443
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=1.8e-05 Score=71.92 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=127.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHhcCChHHHHHHHhhCCCC---Chh---
Q 038890 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV---VIGTALVDMYGKCGCVERAYGVFKEMPKK---DTL--- 340 (569)
Q Consensus 270 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--- 340 (569)
......+......+...|+++.|...++++.... +.+. ..+..+..+|...|++++|...|+.+.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998764 2222 46677889999999999999999998642 222
Q ss_pred HHHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHh
Q 038890 341 AWTAMISVFALN--------GYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVY 411 (569)
Q Consensus 341 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (569)
++..+..++... |+.+.|...|+.+... .|+.. ....+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------H
Confidence 455556666654 7789999999998875 44432 2222211100 0 00000 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PM---EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
....+...+.+.|++++|+..+++. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1225667788999999999998887 22 23 346888899999999999999998888876655
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.9e-07 Score=53.15 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=21.8
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666667777777777777777777666665
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=9.5e-05 Score=69.99 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=85.4
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|+++.|+..++.+.... +.|+..+....+.+.+.|+..+|.+.++++ ...|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 445677888888888877544 456666677777888888888888888877 55665 45666777778888888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+.+++.....+|+++..|..|+++|...|+..+|..-.-+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888888888888888777777666665544443
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=6.3e-06 Score=67.43 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=76.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455566777777888888888888777 3334 5667777788888888888888888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888877644
No 126
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=0.00039 Score=65.24 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=130.9
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLG-AIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
-..+...++.++|+.++.+++. +.|+ ...|+..-.++...| +++++...++.+.+.+ +.+..+++.....+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIR------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3344455666677777766652 1232 233444444444445 4566777776666654 34444555444444
Q ss_pred HhcCCh--HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCH
Q 038890 319 GKCGCV--ERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS---GLV 390 (569)
Q Consensus 319 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~ 390 (569)
.+.|+. +++..+++.+.+ .+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 445542 556666655543 35667777777777777888888888888776433 444454444444333 222
Q ss_pred ----HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 038890 391 ----EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA----GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG---- 456 (569)
Q Consensus 391 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---- 456 (569)
+.......++.... +-+...|+.+...+... +...+|.+.+.+. ...| +...+..|+..+....
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 34555555555333 45667777777777663 3345577776665 3333 5566777777776432
Q ss_pred --------------CHHHHHHHHHHHhhcCCCChhHHHH
Q 038890 457 --------------NVELGEKVAQYLIDLDPLNHAFYVN 481 (569)
Q Consensus 457 --------------~~~~a~~~~~~~~~~~p~~~~~~~~ 481 (569)
..+.|.++++.+.+.+|-....|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3366777777775566654444443
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=6.4e-06 Score=66.46 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
...-.+...+...|++++|..+|+-. ...| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445666678899999999999988 5556 567888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCC
Q 038890 489 AGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (569)
.|+.+.|.+.|+......
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999886543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00015 Score=75.22 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+...+..|.....+.|.+++|..+++...+ +.|+. .....+...+.+.+.+++|....+...... +-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 355666666677777777777777777766 34543 355556666777777777777777766432 3445566666
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..++...|++++|..+|++. ...| +..++..+..++...|+.++|...|+++.+...+-...|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 77777777777777777776 2233 3556777777777777777777777777765543334433
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0047 Score=63.17 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCC
Q 038890 445 WGALLGGCQMHGNV---ELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511 (569)
Q Consensus 445 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (569)
-+.|+..+.+.++. -+|+-+++......|.|..+-..+++.|.-.|-+..|.++++.+--+.|.-|+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 35666777776665 46777777878888888888888888888888888888888888766666653
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00025 Score=67.25 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 416 (569)
...+.-....+...|..++|+..+..+... .|+.. ........+...++.++|.+.++.+... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 334444444556779999999999998875 45554 4455567788999999999999999854 355 6677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 417 IDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
..+|.+.|++.+|+.++++. ..+-|+..|..|..+|...|+..++... .+..|.-.|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999988 4445788999999999999998877653 4456778899999
Q ss_pred HHHHHHHHHHCC
Q 038890 495 VKKTRNLMKERG 506 (569)
Q Consensus 495 A~~~~~~m~~~g 506 (569)
|...+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887664
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.0003 Score=60.76 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=97.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+-..|++++|+++++.+.+.. +-|..++.-=+...-..|+.-.|++-+....+.+ ..|...|.-+...|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHH
Confidence 345688888888888888764 2344555544445556677778888888777665 7889999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 429 AERLIRSM-PMEP-DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 429 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
|.-.++++ -..| ++..+..+...+...| +.+.+.++|.+++++.|.+...+..+
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 99999999 3344 6666777777655444 67789999999999999766555443
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2.2e-05 Score=75.01 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=99.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
....|+..+...+.++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34456666777888999999999888532 54 3445778888888888998888887 3334 6667777777788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
..++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888773
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00017 Score=75.62 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
+...+..|+..+...+++++|.++.+.... ..|+.. .|-.+...+...++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~------~~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK------EHKKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 456788899999999999999999997653 234432 333333355555555544433
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.++.......++.-+..++..+.+ .+...+..+..+|-+.|+.++|..+|+++++.. +-|....+.+...++.. +
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 223333333334333333333332 133466778888888888888888888888865 33567778888888777 8
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHH---HH--HcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDI---LS--RAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~ 460 (569)
.++|.+++.+....+ .+..-|+.+... ++ ...+.+.-..+.+.+ +..--..++.-+...|...+++++
T Consensus 165 L~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 888888887776432 111111111111 11 111222222222222 222234455556677888899999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
+..+++.+.+.+|.|..+...++.+|.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999999998887
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00048 Score=60.01 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=67.1
Q ss_pred HHHHhcCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKK-DTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
..+.+..+.+-|...++.|.+- +..+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3344555666666666666553 33445545555443 24567777777777654 567777777777777777788
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
++|..+++....+. ..++.+...++.+-...|...+
T Consensus 224 eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 88877777777544 3455555555555555554433
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00055 Score=71.87 Aligned_cols=169 Identities=5% Similarity=-0.016 Sum_probs=105.2
Q ss_pred CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 133 ISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMII 211 (569)
Q Consensus 133 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 211 (569)
..| +...+..|+..+...+++++|.++.+..++..+. ....|-.+...+...++.+++..+ . ++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~-----------~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N-----------LID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h-----------hhh
Confidence 444 3446777888888889999999998877776433 333333344467777776666555 2 222
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCH
Q 038890 212 GYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAI 289 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 289 (569)
......++.-+..+...+.. .+...+..+..+|.+.|+.++|..+++++++ .. +-|....+.+...|+.. ++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----AD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----cC-cccHHHHHHHHHHHHHh-hH
Confidence 22233333333333333332 2334666777888888888888888888873 22 45677777777777777 88
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 336 (569)
++|..++.++... |...+++..+.+++.++..
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 8888777776554 4444566666666665554
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0049 Score=59.40 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF 173 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 173 (569)
|+.+|+.||+-+-.+ .++ ++.+.|+++.. +-| .+..|..-|..-....+++..+.+|.+.+..-+ +..
T Consensus 19 di~sw~~lire~qt~-~~~------~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlD 87 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PID------KVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLD 87 (656)
T ss_pred cHHHHHHHHHHHccC-CHH------HHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHh
Confidence 677888888764433 555 78888888876 345 345566667777777888888888887776543 344
Q ss_pred HHHHHHH
Q 038890 174 VQNSVIS 180 (569)
Q Consensus 174 ~~~~l~~ 180 (569)
.|...+.
T Consensus 88 LW~lYl~ 94 (656)
T KOG1914|consen 88 LWKLYLS 94 (656)
T ss_pred HHHHHHH
Confidence 5554444
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=7.1e-05 Score=61.14 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=90.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 361 TFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 361 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
.|++.... .|+ ......+...+...|++++|...|+.+.... +.+...+..+..++...|++++|..+++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555543 343 3455666777888999999999999988543 557788889999999999999999999888 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.| +...+..+...+...|++++|...++++.+..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56778888889999999999999999999999987653
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0071 Score=58.35 Aligned_cols=444 Identities=13% Similarity=0.060 Sum_probs=240.7
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccH
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTY 99 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 99 (569)
|.+..++..++.-+... .+++++..++++... .+..+ ..+..-+..-.+. .+++..+++|.+... -++..|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~---r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSP---RAWKLYIERELAS--KDFESVEKLFSRCLVKVLNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCc---HHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhHhHH
Confidence 44555555555555333 799999999999875 33444 7888888888888 999999999998663 478888
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHH-CCCCCCc-ccHHHHHHHH---------HccCCcHHHHHHHHHHHHhCC
Q 038890 100 NIMIRANACKSSETNDTHSGKCLKLYKQMLC-TGISPDC-LTFPFLLKEC---------TKRLDGLVGASVYGQVVKFGV 168 (569)
Q Consensus 100 ~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~ 168 (569)
...|. |++.-+....+.-+...+.|+-..+ -|+.+-. ..|...+..+ ....+.+..+++|.+++...+
T Consensus 90 ~lYl~-YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLS-YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHH-HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 88876 4443332222211233444554443 3544432 2344444432 222344556666766655322
Q ss_pred CCcHhHHHHH------HHH-----H--HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh-------cCCHHHHHHHHHh
Q 038890 169 CDDVFVQNSV------ISL-----F--MACGFVTSARMLFDEMSNRDVVSWNAMIIGYLR-------SGDLDVALDLFRR 228 (569)
Q Consensus 169 ~~~~~~~~~l------~~~-----~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~ 228 (569)
.-=...|+-. ++. + -+...+-.|.++++++. .+.+++-+ .|--++..++
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~qv--- 237 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQV--- 237 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHHH---
Confidence 2111122211 000 0 01123344444444432 12222211 1111111110
Q ss_pred cCCCChhHHHHHHHHHHhCC------C--hHHHHHHHHHchhccccCCCCccHHHHHH-H----HHHHHccCC-------
Q 038890 229 MKKRNIFSWNSIITGFVQGG------R--AREALELFQEMQSSSVEEMVKPDKITIAS-V----LSACAYLGA------- 288 (569)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~g------~--~~~a~~~~~~m~~~~~~~~~~p~~~~~~~-l----l~~~~~~~~------- 288 (569)
..|-.+|..-...+ . .....-.+++... --+..|+.....+ . -+.+...|+
T Consensus 238 ------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll---~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 238 ------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL---YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred ------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 01111111100000 0 0001111111100 1111222111000 0 011222232
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC---ChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG---CVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
-+++..+++.....-..-+..+|..+...--..- +.+...+.++++.. .-..+|-..+....+......|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566665554333334444444433221111 24555555555443 2345688888888888999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 038890 362 FREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM---P 437 (569)
Q Consensus 362 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 437 (569)
|.+..+.+..+ +...+++++..+| .++.+.|.++|+.-.+.+| .++..-...++.+...|+-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988877 5667788887666 5789999999999887763 44555577888899999999999999998 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHH
Q 038890 438 MEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN----HAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 438 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+.|+ ...|..++.--+.-|+...+.++-++.....|.+ ...-..+++-|.-.+.+..-.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 4444 4699999999999999999999998887655521 122334445555555544333
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00034 Score=60.47 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
|..++-+....|+.+.|...++.+... + |... .-..-..-+...|.+++|+++++.+.+.. +.|..+|..-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 334555666778899999999998775 3 4433 32222233556899999999999999655 66778888777777
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC---ChHHH
Q 038890 421 SRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG---RFDDV 495 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 495 (569)
...|+.-+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++=.+|.++..+..+++.+.-.| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877776 566799999999999999999999999999999999999999999999876655 57778
Q ss_pred HHHHHHHHHCCC
Q 038890 496 KKTRNLMKERGI 507 (569)
Q Consensus 496 ~~~~~~m~~~g~ 507 (569)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 888888876543
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00012 Score=69.95 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++.+..... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345566677777888999999998888877777778888888888889999998888642 2355566666677888999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP 440 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 440 (569)
++.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+..++.++..|
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999988543 3455789999999999999999999998885433
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00018 Score=59.36 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLG 450 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~ 450 (569)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444443 36677777777777775442110 1233344556677777777777777777 222332 23444566
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.+...|++++|+..++.. ...+..+..+...+++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888777552 223335566777888888888888888877653
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=9.7e-06 Score=59.73 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEP---DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45667777777766 2222 344555567777777777777777777 555666666666667778888888888877
Q ss_pred HHH
Q 038890 499 RNL 501 (569)
Q Consensus 499 ~~~ 501 (569)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=9e-05 Score=55.93 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+..+...+...|++++|..++++. ...| +...+..+...+...++++.|.+.++...+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677778888888888888877 4444 34667777888888899999999999999988888888888999999999
Q ss_pred ChHHHHHHHHHHHHC
Q 038890 491 RFDDVKKTRNLMKER 505 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~ 505 (569)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.028 Score=57.83 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 342 WTAMISVFALNGYGK---EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 342 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
-+.|+..+-+.++.. +|+-+++..... -+-|..+-..+++.|+-.|-+..|...|+.+- ...+..|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd-IK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD-IKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcc-hHHhhhccchHH-HHH
Confidence 445566666666554 344444443332 12234455566677777777777777777665 333444443332 223
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL----NHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 492 (569)
-+...|++..+...++.. .+ .-+..----++....+.|.+....++..-=.++... -..+-+..+..++..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 344566776666666554 11 011111112233334666776665554433333222 234455677777888888
Q ss_pred HHHHHHHHHHH
Q 038890 493 DDVKKTRNLMK 503 (569)
Q Consensus 493 ~~A~~~~~~m~ 503 (569)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88888888876
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00019 Score=57.01 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGC 452 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 452 (569)
.+...+...|++++|...|+.+...+.-.+ ....+..+..++.+.|+++.|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543221000 1223344455555555555555555544 11222 23344444455
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|+.++|...++++.+..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555443
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=8.4e-05 Score=65.96 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=90.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 461 (569)
..+.+++++|...|....+-. +.|++.|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 456788888888888888432 456777888888888888888888877777 666654 5888888888888899998
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFD---DVKKTRNLMKERGIRKE 510 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~~~ 510 (569)
++.|+++++++|++......|-.+=.+.+... .+..-++.....|..|+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 88889988888888877777776666555544 33333443344444343
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00015 Score=57.70 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNL 482 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 482 (569)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999988 33343 3467778899999999999999999999988774 5678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998864
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=3.9e-05 Score=54.02 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG-RFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 505 (569)
+..+|..+...+...|++++|+..|+++++.+|.++.++..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999987653
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=5e-05 Score=52.69 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999987643
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=2.1e-05 Score=46.56 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888999999999999999999988888887
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=1.3e-05 Score=47.47 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=32.9
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 137 (569)
.+||++|.+|++.|+++ +|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~------~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVE------EALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHH------HHHHHHHHHHHcCCCCCC
Confidence 47999999999999999 999999999999999984
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0012 Score=59.30 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=87.4
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCChhHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLNHAFYVN 481 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~ 481 (569)
+-|...|-.|...|...|+.+.|..-|... .+.| +...+..+..++..+. .-.++..+++++...+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 568899999999999999999999999988 4444 5667777777754432 4578999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 482 LCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 482 l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988764
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.0013 Score=54.37 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPN---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH--VYHYACM 416 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 416 (569)
|..++..+ ..++...+...++.+.+.... + ......+...+...|++++|...|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 33444444 367777777777777764221 2 1233344566777788888888888877432 1222 1244456
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSMP-MEPDVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
...+...|++++|+..++... .......+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777778888888888887762 2224455666677788888888888887765
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=1.6e-05 Score=46.68 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=31.9
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP 135 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 135 (569)
+.+||.+|.+|++.|+++ .|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~------~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPD------AALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHH------HHHHHHHHHHHhCCCC
Confidence 368999999999999999 9999999999999987
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.026 Score=52.94 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+-.. +-++..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33344445555555555555445555555555555555555444332211 112244444455555555555444
Q ss_pred HHHHH
Q 038890 395 WCFVM 399 (569)
Q Consensus 395 ~~~~~ 399 (569)
.+...
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 44433
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.85 E-value=0.00021 Score=68.73 Aligned_cols=107 Identities=11% Similarity=-0.007 Sum_probs=89.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
-...+...|+++.|+..|+++.+.. +.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3455677899999999999998644 456788889999999999999999999988 5556 56788888999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+++|+..|+++++++|.++.+...+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998877766554433
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=3.4e-05 Score=45.28 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777776
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.0013 Score=60.95 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA-CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998543 2233444444433 333577888999999999776 577888999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998 333333 4899999999999999999999999999887754
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00046 Score=66.36 Aligned_cols=103 Identities=9% Similarity=-0.060 Sum_probs=83.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
....+...|++++|+..|++.++... -+...|..+..++...|+++.|+..++.+.... +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998532 256778888889999999999999999998644 456788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 425 LFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
++++|+..|++. ...|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999998 66676554444443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00039 Score=59.38 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777788888888887776 22222 3567777888888888888888888888888888888888888
Q ss_pred HHHHcCC--------------hHHHHHHHHHHHH
Q 038890 485 MYAKAGR--------------FDDVKKTRNLMKE 504 (569)
Q Consensus 485 ~~~~~g~--------------~~~A~~~~~~m~~ 504 (569)
+|...|+ +++|.+++++...
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 8887776 4556666665544
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00038 Score=59.26 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=76.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
....|..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888889999999998888 33332 347888889999999999999999999999999888888888
Q ss_pred HHHH-------HcCChHHHHHHHHHH
Q 038890 484 DMYA-------KAGRFDDVKKTRNLM 502 (569)
Q Consensus 484 ~~~~-------~~g~~~~A~~~~~~m 502 (569)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888777766654
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.80 E-value=0.034 Score=52.62 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH-HHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY-ACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l 416 (569)
..+|...+....+....+.|..+|.+..+.| +.++...+++++..++ .|+...|..+|+.-...+ ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3456677777788888999999999999988 6677788888887665 588899999999877554 444444 566
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 417 IDILSRAGLFSEAERLIRSM--PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
+..+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788999999999999976 33333 5689999998899999999998888888877763
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00014 Score=64.52 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
.-+.+.+++.+|+..|.+. .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456889999999999998 7777 6677777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 038890 496 KKTRNLMKE 504 (569)
Q Consensus 496 ~~~~~~m~~ 504 (569)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988765
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00055 Score=51.48 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=49.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554322 223344555555555566666666666554 2222 33455555666666666
Q ss_pred HHHHHHHHHHHhhcCC
Q 038890 458 VELGEKVAQYLIDLDP 473 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p 473 (569)
++.|...+....+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666655544
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0017 Score=65.33 Aligned_cols=141 Identities=12% Similarity=0.012 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHc--------CCHHHHHHHHHh
Q 038890 370 VRPNHVTFVGLLSACAH--S---GLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRA--------GLFSEAERLIRS 435 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 435 (569)
.+.+...|..++++... . ++.+.|..+|++..+. .|+ ...|..+..++... .+...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34455555555555322 1 2255666666666643 233 33343333332221 122334444444
Q ss_pred C----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCC
Q 038890 436 M----PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511 (569)
Q Consensus 436 ~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (569)
. ....+...+..+.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++..... |..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 2 1233556777776666778899999999999999888 46788889999999999999999888876644 333
Q ss_pred CceeE
Q 038890 512 PGCSS 516 (569)
Q Consensus 512 ~~~~~ 516 (569)
|++.|
T Consensus 487 pt~~~ 491 (517)
T PRK10153 487 NTLYW 491 (517)
T ss_pred chHHH
Confidence 55554
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=8.6e-05 Score=52.04 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=45.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|++.|+++.+..|.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888999999999999999998888899999999999999999888776543
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0022 Score=59.61 Aligned_cols=154 Identities=8% Similarity=-0.029 Sum_probs=107.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhHHhcCCCCCHhH------------
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS--ACAHSGLVEKGRWCFVMMRHVYLVEPHVYH------------ 412 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 412 (569)
.++...|++++|.+.--..++.. + ...+..+++ ++-..++.+.+...|++..+ . .|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-l--dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR-L--DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc-c--ChhhhhHHhHhhhHHHHH
Confidence 34556788888887766665532 1 122223333 34456778888888877763 2 343211
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 413 -YACMIDILSRAGLFSEAERLIRSM-PM-----EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 413 -~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
+..-..-..+.|++..|.+.|.+. ++ +|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222233456788999999999888 43 44556677777778889999999999999999998888888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.-.++|++|.+.+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999888875543
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0047 Score=57.53 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----CCCCHh-H
Q 038890 345 MISVFALN-GYGKEAFDTFREMEA----EGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL----VEPHVY-H 412 (569)
Q Consensus 345 li~~~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~ 412 (569)
+...|... |+++.|++.|++..+ .| .+. ..++..+...+.+.|++++|..+|+++....- ...++. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33444444 556666655555432 11 111 12444555556666666666666666553211 011111 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+...+-++...|++..|...+++.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223333455566666666666665
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.014 Score=48.25 Aligned_cols=131 Identities=14% Similarity=0.085 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC------CCCCCHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM------PMEPDVF 443 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~ 443 (569)
..|+...-..|..+....|+..+|...|++.. ..-+.-|......+.++....+++..|...+++. +..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 46777777778889999999999999999887 4555678888889999999999999999999887 233443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
-..+...+...|.+.+|+..|+.+.+..|. +.........+.++|+.++|..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445778899999999999999999998876 45666677889999999988876666544
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00022 Score=52.46 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVR-PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++... .. +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555543221 122233334555555555555555555411 11 1122233333555555555555555
Q ss_pred HHH
Q 038890 432 LIR 434 (569)
Q Consensus 432 ~~~ 434 (569)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00024 Score=49.24 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+...+...|++++|+..|++. ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 556888888889999999999999999999888874
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0023 Score=54.57 Aligned_cols=129 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
...+..+...+...|++++|+..|++.......+. ...+..+..++...|++++|...+++..... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 44566666667777777777777777765432222 2456666666777777777777777766432 2344555566
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
..++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 66666666655544322221 112577888888888888876 434444444444
No 173
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.0006 Score=63.03 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhH---HhcCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMR---HVYLVE-PHVYHYACMIDILSRAGLFSEAERLIRSM-------P-MEPDV 442 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 442 (569)
..|..|...|.-.|+++.|+...+.-. +.+|=+ .....+..+..+++-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666667789999987665322 233311 22457788999999999999999988865 2 12244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDL----D--PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
....+|...|.-..+++.|+.++.+-..+ + .....++-+|+.+|...|..++|+.+.+...+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56778888888888999999988875542 2 224577888999999999999999887776543
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.00031 Score=50.04 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
...+.+.++++.|.+++++++..+|.++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999886553
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0061 Score=61.43 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHhHH
Q 038890 337 KDTLAWTAMISVFAL--N---GYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHS--------GLVEKGRWCFVMMRH 402 (569)
Q Consensus 337 ~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 402 (569)
.+...|...+.+... . ++...|+.+|++..+. .|+. ..+..+..++... .+...+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466777777776443 2 2367889999998884 5653 3444433333211 123344444444332
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
....+.++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2122445677888877777889999999999999 77789889999999999999999999999999999999774
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0046 Score=57.59 Aligned_cols=162 Identities=12% Similarity=0.179 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHH
Q 038890 173 FVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRS-GDLDVALDLFRRMKK-----RN----IFSWNSIIT 242 (569)
Q Consensus 173 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 242 (569)
..+...+..|...|++..|-+++. .+...|... |+++.|++.|++..+ .+ ..++..+..
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455566667777777666544 355666666 778888777777652 11 235667778
Q ss_pred HHHhCCChHHHHHHHHHchhccccCC-CCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCCc--chhHHHHHH
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEM-VKPDKI-TIASVLSACAYLGAIDHGKWVHGYLRRSG--LDCD--VVIGTALVD 316 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~ 316 (569)
.+.+.|++++|.++|+++.......+ .+.+.. .+...+-++...|+...|...+++..... +..+ ..+...|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 89999999999999998763211111 123332 23334446667788888888888876542 2222 345566677
Q ss_pred HHHhc--CChHHHHHHHhhCCCCChhHHHHH
Q 038890 317 MYGKC--GCVERAYGVFKEMPKKDTLAWTAM 345 (569)
Q Consensus 317 ~~~~~--g~~~~A~~~~~~~~~~~~~~~~~l 345 (569)
++-.. ..++.+..-|+.+.+-|..--..|
T Consensus 244 A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 66543 357777788887777665444333
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.49 E-value=0.099 Score=49.75 Aligned_cols=426 Identities=13% Similarity=0.110 Sum_probs=206.9
Q ss_pred HHHhhcChHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC-CcccHHHHHHH--Hh
Q 038890 34 AIDECKNMRELKEIHTQIIKSPCLQTN---DHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS-DLYTYNIMIRA--NA 107 (569)
Q Consensus 34 ~l~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~ 107 (569)
.|.+.++..++..+|..+.+..- .++ +..-....++++|.. ++.+.-........+. .-..|-.+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45677899999999999997632 222 112344578888887 4566655555555432 13445455444 34
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHC--CCCCC---c---------ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCC----
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCT--GISPD---C---------LTFPFLLKECTKRLDGLVGASVYGQVVKFGVC---- 169 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---- 169 (569)
+.+.+. +|++.+....++ +-.|. . .-=+..+..+...|.+.+++.+++++...=++
T Consensus 91 ~~k~~~------kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~ 164 (549)
T PF07079_consen 91 KQKEYR------KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE 164 (549)
T ss_pred HhhhHH------HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc
Confidence 567777 899888887665 32221 1 11123445667889999999999888775433
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH---------HHHHHHhcC----------
Q 038890 170 DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDV---------ALDLFRRMK---------- 230 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------A~~~~~~~~---------- 230 (569)
.+..+||.++-.+++.=-++- -+.+...=..-|--++-.|.+.=..-+ +.+++..+.
T Consensus 165 w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 165 WNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred ccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 788889887777665421111 011111001112223333322110000 111111100
Q ss_pred ----------------CCCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH
Q 038890 231 ----------------KRNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 231 ----------------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 293 (569)
.|+. .+...+...+.+ +.+++..+.+.+....+..-.+-=..+|..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1111 011112222222 223333332222200000000001233444444444445544444
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 294 WVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+.+.-+.-. .|+...-..+ --..+.+..|...|...++ +...=+.+|+......+ |
T Consensus 319 q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~DD~~~T----------klr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 319 QYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCEDDESYT----------KLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhcchHHHH----------HHHHHHHHHHHHHhhcc--c
Confidence 444443332 1222111111 0111112222211111111 11222344444443322 2
Q ss_pred H-HHHHHHHHH---HHccCC-HHHHHHHHHHhHHhcCCCCCHhHHHHHHH----HHHHc---CCHH---HHHHHHHhCCC
Q 038890 374 H-VTFVGLLSA---CAHSGL-VEKGRWCFVMMRHVYLVEPHVYHYACMID----ILSRA---GLFS---EAERLIRSMPM 438 (569)
Q Consensus 374 ~-~~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~ 438 (569)
. .....|+.+ +-+.|. -++|+.+++.+.+-. +-|...-|.+.. .|..+ ..+. +-...+++.|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 2 222223322 334444 677777777777322 233333222221 12111 1111 22233444466
Q ss_pred CC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 439 EP----DVFVWGALLGG--CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 439 ~p----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.| +...-|.|..+ +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 65 33456666666 5689999999998888889999 7999999999999999999999999874
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0023 Score=52.20 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=76.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFD 493 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 493 (569)
...-+...|++++|..+|+-+ -.. -+..-|..|..++...+++++|+..|..+..+.++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 223 366678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 038890 494 DVKKTRNLMKE 504 (569)
Q Consensus 494 ~A~~~~~~m~~ 504 (569)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0018 Score=59.96 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR-AGLFSEAERLIRSM--PMEPDVFVWGALLGG 451 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 451 (569)
.+|..+++.+.+.+..+.|..+|.++.+...+ +..+|-.....-.+ .++.+.|..+|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999844333 34445544444333 56777799999998 444577889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...++.+.|..+|++++..-|... ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 68999999999999999999999888654
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00019 Score=40.88 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0035 Score=49.07 Aligned_cols=87 Identities=16% Similarity=-0.019 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSM---PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYA 487 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 487 (569)
+..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445556667777777777766 32222 235556666777777777777777777776666 5555566666777
Q ss_pred HcCChHHHHHHHHHH
Q 038890 488 KAGRFDDVKKTRNLM 502 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m 502 (569)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766544
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.11 Score=48.74 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQM 454 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (569)
.+.+.-+.-|...|+...|.++-.+.. -|+...|-..+.+++..++|++-..+... +-++..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 345555666777888888777655544 48999999999999999999998887654 2345778889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988881 1255677889999999998865443
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.18 Score=50.58 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCCcccHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCC--------cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 038890 134 SPDCLTFPFLLKECTKRLDGLVGASVYGQVVK-FGVCD--------DVFVQNSVISLFMACGFVTSARMLFDEMSNRDVV 204 (569)
Q Consensus 134 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 204 (569)
.|.+..|..+.......-+++.|+..|-+... .|++. +...-.+=+.+ --|.+++|+++|-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 37777888887777777777777777655433 12221 11111112222 24788888888888777664
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHc
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKKR-----NIFSWNSIITGFVQGGRAREALELFQEM 260 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m 260 (569)
.+..+.+.||+-.+.++++.-... -...|+.+...+.....|++|.+.|..-
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677778888887777664321 1245777777777777777777766553
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0022 Score=61.85 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKK------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
......+++......+.+.+..++.+.... ...+..++++.|...|..+.++.++..=...|+-||..+++.|+
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333344444444444444444444443321 12233455555555555555555555555555555555555555
Q ss_pred HHHHccCCHHHHHHHHHHhH
Q 038890 382 SACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~ 401 (569)
..+.+.|++..|.++...|.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHhhcccHHHHHHHHHHHH
Confidence 55555555555555555554
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.39 E-value=0.017 Score=47.10 Aligned_cols=85 Identities=8% Similarity=-0.121 Sum_probs=40.4
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|..+|+.+.... +.+...|..|.-++-..|++++|+..|... .+.| |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 344455555555555444221 233344445555555555555555555544 2222 334444455555555555555
Q ss_pred HHHHHHHhh
Q 038890 462 EKVAQYLID 470 (569)
Q Consensus 462 ~~~~~~~~~ 470 (569)
.+.|+.++.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555555544
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.034 Score=52.07 Aligned_cols=81 Identities=11% Similarity=-0.142 Sum_probs=45.7
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHH
Q 038890 146 ECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 222 (569)
++.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.+.-.+ .....+.-.-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 345566777888888888887654 455555555566666777766654443333 1222333334444455555555
Q ss_pred HHHHH
Q 038890 223 LDLFR 227 (569)
Q Consensus 223 ~~~~~ 227 (569)
...|+
T Consensus 137 ~~~~~ 141 (486)
T KOG0550|consen 137 EEKLK 141 (486)
T ss_pred HHHhh
Confidence 55544
No 187
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.2 Score=50.76 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGC 452 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 452 (569)
...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-+... .+.-|.-++.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33445555666677889999988877766 5888889888999999999999888888763 245567788899
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.+.|+.++|.+++-+..... ....+|.+.|++.+|.++--+
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 99999999998887644322 567788999999998876543
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.38 E-value=0.00018 Score=41.03 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=27.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCC
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGI 133 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~ 133 (569)
.+||.++++|++.|+++ +|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~------~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFE------EALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHH------HHHHHHHHHhHCcC
Confidence 47999999999999999 99999999998774
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00043 Score=48.45 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
.|++++|..+|+.+.... +-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555554332 234444444555555555555555555555
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.043 Score=49.56 Aligned_cols=184 Identities=10% Similarity=-0.033 Sum_probs=102.5
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH----HHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF----PFLLKECTKRLDGLVGASVYGQVVKFGVCD 170 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 170 (569)
+...+-.....+...|++. +|++.|+.+... -|+.... ..+..++.+.++++.|...+++.++.-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~------~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWK------QAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3333333444556778888 999999999874 3544322 234566778899999999999998875543
Q ss_pred cHhHHHHHHHHHHh--cC---------------CHH---HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 171 DVFVQNSVISLFMA--CG---------------FVT---SARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 171 ~~~~~~~l~~~~~~--~g---------------~~~---~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
....+...+.+.+. .+ +.. .|...|+ .++.-|=...-..+|...+..+.
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~-----------~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS-----------KLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH-----------HHHHHCcCChhHHHHHHHHHHHH
Confidence 33333333443331 11 111 2222222 23333333333344444333333
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 231 KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 231 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
..=...--.+...|.+.|.+..|..-++.+.+. -.+.+........+..+|...|..++|..+...+
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 221122224556778888888888888877642 2333444556666677777777777776665544
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.057 Score=53.44 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGC 452 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 452 (569)
..+...+...+-+...+..|-++|..+-. ...+++.....++|++|..+-+.. ...||+. ......+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwL 814 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWL 814 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc--chHHHHh
Confidence 34555555555566667777777777653 234666777788888888887777 4444432 2233334
Q ss_pred HhcCCHHHHHH
Q 038890 453 QMHGNVELGEK 463 (569)
Q Consensus 453 ~~~~~~~~a~~ 463 (569)
+...++++|.+
T Consensus 815 AE~DrFeEAqk 825 (1081)
T KOG1538|consen 815 AENDRFEEAQK 825 (1081)
T ss_pred hhhhhHHHHHH
Confidence 44444444444
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0035 Score=57.04 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCD 484 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 484 (569)
|...+..+.+.|++++|+..|+.+ ...|+. ..+..+...+...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666666665 223322 345556666666777777777777776665553 344444566
Q ss_pred HHHHcCChHHHHHHHHHHHHC
Q 038890 485 MYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++...|++++|..+++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777777766553
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.04 Score=49.77 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+..-|.+.|.+..|..-++.+++.-|.+ ..+...++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4455888999999999999999987764 4557778899999999999999877654
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.23 E-value=0.0048 Score=59.56 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=91.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAE--GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=. .+|+=||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHH
Confidence 4445566677777777888999999888764 222234566799999999999999999999888 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 038890 416 MIDILSRAGLFSEAERLIRSM---PMEPDVFVWGALLGGCQMH 455 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 455 (569)
||+.+.+.|++..|.++...| +.-.+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999888 3334445555555555444
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0011 Score=46.48 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDP 473 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 473 (569)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888888777 4445 4557777777888888 68888888888887776
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.20 E-value=0.007 Score=45.58 Aligned_cols=81 Identities=12% Similarity=-0.007 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCC-CccHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhCCCC
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMV-KPDKITIASVLSACAYLG--------AIDHGKWVHGYLRRSGLDC 306 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~ 306 (569)
+....|..+...+++.....+|+.++ ..|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...++.|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslk----RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP 102 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLK----RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP 102 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH----hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC
Confidence 34455666777799999999999999 7788 899999999999887643 2345677899999999999
Q ss_pred cchhHHHHHHHHHh
Q 038890 307 DVVIGTALVDMYGK 320 (569)
Q Consensus 307 ~~~~~~~l~~~~~~ 320 (569)
+..+|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987765
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00038 Score=40.47 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=30.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 465 AQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 465 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.0083 Score=50.99 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555566666666666666654322211 23455555666666666666666666553
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.014 Score=45.67 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMI 417 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 417 (569)
.+..++-..|+.++|+.+|++....|+... ...+..+..++...|++++|..+|+.....+ |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 445667778888888888888888776654 2456667777888888888888888887543 32 22223344
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038890 418 DILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~ 436 (569)
.++...|+.++|++.+-..
T Consensus 83 l~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5667778888887776543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.032 Score=46.20 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=76.9
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHH
Q 038890 133 ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-----RDVVSWN 207 (569)
Q Consensus 133 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 207 (569)
+.|+...-..|..++...|+..+|...|.+...--+..|....-.+.++....+++..|...++++-+ +++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 44666666677777777888888888877776543445666666777777777777777777777655 2344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
.+.+.+...|...+|+..|+.... |+...--.....+.++|+.+++..-+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 556666666666666666666553 333322222333445555544443333
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.15 E-value=0.25 Score=47.06 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV-WGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~ 451 (569)
...|...+.+..+..-.+.|..+|-++.+..-+.+++..+++++..++ .|+..-|..+|+-- ..-||... -+..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456777888888888899999999999954436788999999999776 67888899998865 33455443 3556666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 452 CQMHGNVELGEKVAQYLIDLDP--LNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+...++-+.|..+|+..++.-. .-...|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7788999999999997665322 224678888877777888877776655554
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.14 E-value=0.0085 Score=45.14 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGV-RPNHVTFVGLLSACAHSG--------LVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+++.+. ..+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHHH
Confidence 345555566888888888888888888 788888888887765432 2334556666666 455677777777
Q ss_pred HHHHHHHH
Q 038890 415 CMIDILSR 422 (569)
Q Consensus 415 ~l~~~~~~ 422 (569)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 76666543
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.038 Score=48.48 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=104.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEPDVFVWGA 447 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~ 447 (569)
..+.++.++.-.|.+.-....+.+..+.+ -+.++.....|++.-.+.|+.+.|..+|++. +..-+......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44566777777888988999999998644 2456778888999999999999999999855 22223333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
....+.-++++..|...+.++...+|.++.+.++-+-++.-.|+..+|.+.++.|.+.-..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44456678899999999999999999999998888878888899999999999998765443
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.0028 Score=53.99 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHhhcC--CCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc------------
Q 038890 84 ATNVFSHI--KRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK------------ 149 (569)
Q Consensus 84 A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------------ 149 (569)
-...|+.. ..++-.+|..++..|.+.. ....|+.+-....+..|.+-|+.-|..+|+.||..+=+
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~-~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRD-VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcC-CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34555555 4577888888888887765 44567777888889999999999999999999987643
Q ss_pred ----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhhc
Q 038890 150 ----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV-TSARMLFDEM 198 (569)
Q Consensus 150 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 198 (569)
-.+-+-|++++++|...|+-||..++..|+.++++.+.. .+..++.-+|
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 124567899999999999999999999999999887753 3344443333
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.05 E-value=0.3 Score=46.43 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKK-------DTLAWTAMISVFAL---NGYGKEAFDTFREMEAEGVRPNHVTFV 378 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 378 (569)
.+...++-.|....+++...++.+.+... ....-.....++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445666788889999999999988764 22333344556666 789999999999876666677888888
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHH----HHHHHH---HhC------
Q 038890 379 GLLSACAH---------SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFS----EAERLI---RSM------ 436 (569)
Q Consensus 379 ~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~------ 436 (569)
.+.+.|-. ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- ...
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 87776532 2235667777765542 3454433223333333334321 222222 111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 437 -PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 437 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.-..|-..+.+++.++.-.|+.+.|.+.++++.+..|+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2234666777888888889999999999999998887754
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.05 E-value=0.014 Score=53.06 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=72.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP----DVFVWG 446 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~ 446 (569)
.|...+....+.|++++|...|+.+.+.+ |+ ...+..+..+|...|++++|...|+.+ ...| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44444444456688888888888888655 33 246677888888888888888888887 2223 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.+...+...|+.+.|..+|+.+++..|.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6667778899999999999999998888653
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0015 Score=40.76 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
.++..+...+...|++++|+++++++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999998888764
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.008 Score=51.33 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=59.0
Q ss_pred HHHhhC--CCCChhHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 038890 329 GVFKEM--PKKDTLAWTAMISVFAL-----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG------------- 388 (569)
Q Consensus 329 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 388 (569)
..|+.. ...+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566677777777664 4777888888899999999999999999998875421
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 389 ---LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 389 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
+-+-|++++++|. .+|+-||..++..+++.+++
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhcc
Confidence 2234444555554 44455555555555554443
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.056 Score=47.44 Aligned_cols=130 Identities=10% Similarity=0.048 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH-
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA- 313 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 313 (569)
.+.+.++..+.-.|.+.-....++++. ....+.++.....+.+...+.|+.+.|...+++..+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi----~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVI----KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHH----HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 455677777888888888888998887 555566788888888888899999999999987776543444433333
Q ss_pred ----HHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 314 ----LVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 314 ----l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
....|...+++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334566677888888888877654 4455555555556678888899988888874
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.0038 Score=44.28 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..|.+.+++++|+++++.+ ...| +...+......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678888999999988888 5555 5567777888888999999999999999999888765543
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.98 E-value=0.0048 Score=59.05 Aligned_cols=63 Identities=13% Similarity=-0.094 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA---FYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...++.+..+|...|++++|+..|+++++++|++.. +|.+++.+|...|++++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555442 255555555555555555555555544
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.95 E-value=0.0024 Score=46.07 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDL----DPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+++.+...+...|++++|+..++++.+. ++. ...++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888999888888888753 222 245688899999999999999999887653
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.93 E-value=0.042 Score=42.66 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+...|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+.+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34467777777777777653 245556666655555566666666666665433221 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
....+-.++ .+.......+..+..+|+-++-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333332 244455667788889999999999999998877778999999999999999999999999999999985
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.90 E-value=0.54 Score=46.75 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=131.6
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
+..+|...+..-...|+.+.+.-+|+...-+ =...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888999999999999988765 2345666666666679999998888776654332222221111222
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRAGLFSEAE---RLIRSM-PMEPDVFVWGALLG-----GCQ 453 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~~ 453 (569)
+-..|++..|..+++.+.... |+ +..-..-+....+.|..+.+. +++... ..+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 446789999999999998654 44 333344555667888888887 444444 11222222222222 244
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR---FDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~ 510 (569)
-.++.+.|..++.++.+..|++...|..++......+. .+--.-+...+...-+.++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 57899999999999999999999999999988777653 2323334444444444443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.0066 Score=50.17 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
+...++..+...|++++|.+.++++...+|.+...+..++.+|.+.|+..+|.+.|+++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455667778899999999999999999999999999999999999999999999999884 4588876
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.091 Score=47.49 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 038890 371 RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG---LFSEAERLIRSM-PMEP-DVFVW 445 (569)
Q Consensus 371 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 445 (569)
+-|...|..|...|...|++..|...|....+.. ++++..+..+..++.... ...++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3467899999999999999999999999998665 467777777777765443 457889999999 5555 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..|...+...|++.+|...|+.|.+..|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 7788889999999999999999999888764
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.026 Score=52.89 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=81.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
..++..+..++.+.+++..|+...... .. ++|...+..=..++...|+++.|...|+++.+.+|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 356788899999999999999998887 33 4577788888899999999999999999999999999998888988887
Q ss_pred HcCChHHH-HHHHHHHHHC
Q 038890 488 KAGRFDDV-KKTRNLMKER 505 (569)
Q Consensus 488 ~~g~~~~A-~~~~~~m~~~ 505 (569)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665555 7788888543
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.85 Score=46.11 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=28.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
+....-.+..++...|.-++|.+.|-+...|. ..+..|...++|.+|.++-++..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444455556666666666665554443332 23344555556666665555544
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.62 E-value=0.14 Score=50.81 Aligned_cols=87 Identities=11% Similarity=0.143 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--Chh---------
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTL--------- 340 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--------- 340 (569)
+..+...+...+.+...+..|.++|..+-+. ..++..+...++|++|..+-+..++- ++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 4445555555555666666777777666432 35667777788888888887777652 211
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 341 --AWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 341 --~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
-|...-.+|.+.|+..+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233466777888888888877654
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.59 E-value=0.0045 Score=44.63 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-------P-MEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.+|+.+...|...|++++|+..|++. + ..|+ ..++..+..++...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666655 1 1122 34666677777777777777777777654
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.0068 Score=56.36 Aligned_cols=256 Identities=11% Similarity=-0.003 Sum_probs=141.2
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHccCCcHHHHHHHHHHHH----hCCCC-cHhHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPD----CLTFPFLLKECTKRLDGLVGASVYGQVVK----FGVCD-DVFVQ 175 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~ 175 (569)
-+++.|+.. ..+..|+..++.|- -| ...|..|.++|.-.+++++|+++...=+- .|-.. .....
T Consensus 26 RLck~gdcr------aGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 26 RLCKMGDCR------AGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHhccchh------hhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 356667776 77777777777652 12 22455566666667777777766432111 11000 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038890 176 NSVISLFMACGFVTSARMLFDEMSN---------RDVVSWNAMIIGYLRSGD--------------------LDVALDLF 226 (569)
Q Consensus 176 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 226 (569)
..|...+--.|.+++|..+-.+-.. .....+..+...|...|+ ++.|.+.|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 2233344445555555543222111 111223334444443222 22333333
Q ss_pred HhcCC---------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCC-CccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 227 RRMKK---------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV-KPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 227 ~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
.+-.+ .-...|..|.+.|.-.|+++.|+..-+.-+.-.-+-|- ......+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 32111 11235777777778888888887665543210001111 123456777888888889999888887
Q ss_pred HHHHH----hCC-CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChhHHHHHH
Q 038890 297 GYLRR----SGL-DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---------KDTLAWTAMISVFALNGYGKEAFDTF 362 (569)
Q Consensus 297 ~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (569)
+.... .|- ......+-+|.+.|.-..++++|+.++.+-.. -...++.+|..+|...|..++|+...
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 76443 221 23455667788888888888888888765321 13456777888888888888888776
Q ss_pred HHHHH
Q 038890 363 REMEA 367 (569)
Q Consensus 363 ~~m~~ 367 (569)
+.-++
T Consensus 339 e~hl~ 343 (639)
T KOG1130|consen 339 ELHLR 343 (639)
T ss_pred HHHHH
Confidence 65543
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.48 E-value=0.16 Score=44.67 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPDC----LTFPFLLKECTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 167 (569)
.+...|++. +|++.|+.+...- |+. .....++.++.+.|+++.|...++.+++.-
T Consensus 14 ~~~~~g~y~------~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 14 EALQQGDYE------EAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHCT-HH------HHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHCCCHH------HHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345556666 7777777776642 221 133344555666777777777777776654
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.59 Score=41.00 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.....+...|++.+|...|+.+...- .+-+--....-.++.++.+.|+++.|...++.+.+.-......-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445556666666666666665321 1111122333445556666666666666666665542111111111111111
Q ss_pred HhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038890 319 GKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 391 (569)
+......... ....| ...+..++.-|=...-..+|...+..+... =...-..+..-|.+.|.+.
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 1100000000 00111 012233333333334444444444333221 0011122445567777777
Q ss_pred HHHHHHHHhHHhcCCCCCH----hHHHHHHHHHHHcCCHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHV----YHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 429 (569)
.|..-++.+.+.+ |+. .....++.+|.+.|..+.|
T Consensus 159 aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 159 AAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777654 322 3445566667777766643
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.04 Score=52.96 Aligned_cols=99 Identities=8% Similarity=-0.025 Sum_probs=67.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
.+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|++.++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 45677888888888888888888888886 666764 35888888888888888888888888886322 12111
Q ss_pred HH--HHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 483 CD--MYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 483 ~~--~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
.. .+....+.++..++++.+...|.+.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1112234446666777777766643
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.051 Score=51.07 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
..++..+..++.+.+++..|++...+.++.+|+|..++..-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467778888999999999999999999999999999999999999999999999999999873
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.27 E-value=0.075 Score=42.11 Aligned_cols=52 Identities=6% Similarity=0.087 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 369 GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 369 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3557777777777777777777777777777777777666667776666544
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.21 E-value=0.13 Score=41.14 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH-HHHHHHHHHHcCC
Q 038890 418 DILSRAGLFSEAERLIRSM----PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF-YVNLCDMYAKAGR 491 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~ 491 (569)
....+.|++++|++.|+.+ +..| ....-..++.++.+.++++.|...+++.++++|.++.+ |.....++.....
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3345678888888888877 2222 33456678888999999999999999999999887644 3333333332222
Q ss_pred hHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCc
Q 038890 492 FDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYI 559 (569)
Q Consensus 492 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 559 (569)
.+ ..+..+- +...| -.....+...|++++....++-|.+|.
T Consensus 98 ~~---~~~~~~~--~~drD----------------------~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 98 DE---GSLQSFF--RSDRD----------------------PTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred hh---hHHhhhc--ccccC----------------------cHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 11 2222222 22111 124567788888888877777776654
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.063 Score=47.85 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
|..++...|++++|..+|..+.+..|. .|..+.-|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555555554433 234455555555555555555555555544
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.04 E-value=1.1 Score=42.89 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG---VRPNHVTFVGLLSACAH---SGLVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
+...++.+|-...+++..+++.+.+.... +.-....-....-++.+ .|+.++|..++..+.... -.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHH
Confidence 34456667888999999999999998641 11122222334455666 899999999999855333 367888888
Q ss_pred HHHHHHH----H-----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHhhcC----
Q 038890 415 CMIDILS----R-----AGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGN-VE---LGEKVA----QYLIDLD---- 472 (569)
Q Consensus 415 ~l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~~---- 472 (569)
.+...|. . ....++|++.|.+. .+.||...=-.++..+...|. ++ +..++- ..+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8887764 2 22478899999888 666765433333333333332 22 222222 1111221
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
-.+...+.+++.+..-.|++++|.+..++|....
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355667889999999999999999999998764
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.95 E-value=0.74 Score=46.25 Aligned_cols=159 Identities=12% Similarity=0.082 Sum_probs=101.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEG-VRPNH-----VTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHY 413 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (569)
.++....-.||-+.+++.+.+..+.+ +.-.. -.|...+..++. ..+.+.+.++++.+.+.+ |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 34444444566666666666544321 11100 123333333332 457788999999998765 665554
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHH-HHHH
Q 038890 414 A-CMIDILSRAGLFSEAERLIRSM-PM-----EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVN-LCDM 485 (569)
Q Consensus 414 ~-~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 485 (569)
. .-.+.+...|++++|++.|++. .. +.....+.-+...+....++++|.+.+.++.+...-+..+|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 3456677889999999999976 11 1233456667777888999999999999999876555555544 4445
Q ss_pred HHHcCCh-------HHHHHHHHHHHHC
Q 038890 486 YAKAGRF-------DDVKKTRNLMKER 505 (569)
Q Consensus 486 ~~~~g~~-------~~A~~~~~~m~~~ 505 (569)
+...|+. ++|.++++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6677888 8888888887443
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.94 E-value=0.13 Score=47.46 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEA-EGVRPN---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYH 412 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 412 (569)
.|..+..++-+..++.+++.+-+.-.. .|..|. -....++..++...+.++++++.|+...+...-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433322 122221 122333555666666777777777666532221112 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-------PMEPDVF-----VWGALLGGCQMHGNVELGEKVAQYLIDLD------PL 474 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 474 (569)
+-.|...|.+..+.++|.-+..+. +++.-.. ....+.-++...|....|.+..+++.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777665554443 2221111 22334445666777777777776665522 22
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 475 NHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.......+++.|...|+.+.|..-|+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334455667777777777666665554
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.048 Score=44.99 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=17.9
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR 434 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (569)
...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.++|+
T Consensus 73 ~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 33444444444444443222 2233344444444444444444444433
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.85 E-value=1.6 Score=41.02 Aligned_cols=273 Identities=16% Similarity=0.124 Sum_probs=159.8
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHH--HHHhCCChHHHHHHHHHchhccccCCCCccHHHHH----HHHHHHHcc
Q 038890 216 SGDLDVALDLFRRMK---KRNIFSWNSIIT--GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA----SVLSACAYL 286 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~----~ll~~~~~~ 286 (569)
.||-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|. -|+.|-. .|.-...+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl---------~dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML---------DDPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh---------cChHHHHHhHHHHHHHHHhc
Confidence 345555555444332 223333333332 3345677777777777776 2223322 222223456
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhH--HHHHHHHH--H-HcCChh
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLA--WTAMISVF--A-LNGYGK 356 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~li~~~--~-~~g~~~ 356 (569)
|..+.|..+-+..-..- +.-.......++..+..|+|+.|+++.+.-.. ++..- --.|+.+- . -..+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 77777776666655432 22344566777777888888888888775432 22211 11122111 1 123455
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 357 EAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 357 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
.|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+.. ..-+++
T Consensus 247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta--~dRlkR 317 (531)
T COG3898 247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA--LDRLKR 317 (531)
T ss_pred HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH--HHHHHH
Confidence 55555444433 566643 3334457788999999999999988743 46666553333 34555532 222222
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 038890 436 M----PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA-GRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 436 ~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~ 508 (569)
. ..+| +......+..+....|++..|..--+.+....|.. .+|..|++.-... |+-.++..++-+.+..-..
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2 3455 45677777888889999999998888888888874 5777777776554 9999999888877664433
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.84 E-value=1.7 Score=41.00 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHH--HHhcCCHHHHHHHHhhcCC-CChh--HHHHHHHH
Q 038890 140 FPFLLKECT--KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL--FMACGFVTSARMLFDEMSN-RDVV--SWNAMIIG 212 (569)
Q Consensus 140 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~ 212 (569)
|..|=.++. -.||-..|.+.-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|.. |... ....|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 444444433 346777777666554432 22233333334433 3446888888888888876 3222 23333334
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 213 YLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
--+.|+.+.|.+.-++.-. | -...+...+...+..|+|+.|+++++.-.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4567888877777666543 2 23466777888888888888888887765
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.76 E-value=0.18 Score=39.96 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 038890 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 453 (569)
+.|+..+..+++.+|+..|++..|+++++.. +++.+..+|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666665555 44445556666665543
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.60 E-value=0.21 Score=38.86 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=54.9
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCh---hHHHHHHHHHHHcCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-PLNH---AFYVNLCDMYAKAGRF 492 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 492 (569)
++...|+.+.|++.|.+. .+-| ....||.-..++.-+|+.++|++-++++.++. +... ..|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455666777777776665 3332 55566766777777777777777777776643 3222 2244445566667777
Q ss_pred HHHHHHHHHHHHCCC
Q 038890 493 DDVKKTRNLMKERGI 507 (569)
Q Consensus 493 ~~A~~~~~~m~~~g~ 507 (569)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777777666653
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.59 E-value=0.54 Score=46.52 Aligned_cols=161 Identities=16% Similarity=0.053 Sum_probs=95.1
Q ss_pred HHHHhCCChHHHHHHHH-HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 242 TGFVQGGRAREALELFQ-EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
....-.++++.+.+... .-. ...++ ....+.++.-+.+.|..+.|.++..+- ..-.+...+
T Consensus 269 k~av~~~d~~~v~~~i~~~~l----l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~ 330 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNL----LPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQ 330 (443)
T ss_dssp HHHHHTT-HHH-----HHHHT----GGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhh----cccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHh
Confidence 34455677777666665 111 11122 344666777777778777777664322 123345667
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
.|+++.|.++.++.. +...|..|.......|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+..
T Consensus 331 lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 331 LGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 888888888876655 566888888888888888888888876432 455555667778877776666665
Q ss_pred HHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038890 401 RHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438 (569)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (569)
.... -++....++.-.|+.++..+++.+.+.
T Consensus 400 ~~~~-------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 400 EERG-------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHTT--------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHcc-------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 5322 145555566667788888877777653
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=95.58 E-value=0.36 Score=46.76 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 354 YGKEAFDTFREMEA-EGVRPN-HVTFVGLLSACAHS---------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 354 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+.|..+|.+... ..+.|+ ...|..+..++... .+..+|.++-+...+.. +.|+.....+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 44667777887762 224554 34566665554322 23344555555555433 4556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF--YVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 498 (569)
.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++.++.|....+ ....++.|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77777777777777 555653 355555555666777778888777777777764332 22233344443 45666665
Q ss_pred HH
Q 038890 499 RN 500 (569)
Q Consensus 499 ~~ 500 (569)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=1 Score=40.78 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=76.0
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGA---LLGGCQMHGNVE 459 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 459 (569)
.....|++..|..+|....... +-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778888888887777443 33455666778888888888888888888743322222222 223333333333
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+... ++.-...+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 22233457888888888888888888888888876666544
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.21 Score=45.69 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=115.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH----HHHHHHHHHcCC
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY----ACMIDILSRAGL 425 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 425 (569)
.-.|+..+|-..++++++. .+-|...+.-.-.+|...|+.+.-...++++.... .++...| ..+..++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 3467888888888888875 45567777777889999999999999999887543 3555444 344556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN----HAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+++|++.-++. .+.| |...-.+....+...|++.++.++..+-...-..+ ...|=..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888 5554 66677788888889999999999888765432221 122344555677889999999999
Q ss_pred HHHHHCCCCCC
Q 038890 500 NLMKERGIRKE 510 (569)
Q Consensus 500 ~~m~~~g~~~~ 510 (569)
+.-.-.....+
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 97755544444
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.2 Score=44.81 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH---VYHYACMIDILSRAGLFSEAERLIRSM----PMEP-DVFVWGA 447 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 447 (569)
.|+.-+.. .+.|++..|...|....+.+ +-+ ...+-.|..++...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555543 45677888888888877654 221 244556888888888888888888777 3333 3456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
|.....+.|+.++|...|+++.+..|.++.+-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77788888888999999998888888876543
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=2 Score=39.09 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=113.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 038890 326 RAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL 405 (569)
Q Consensus 326 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 405 (569)
...++++.+..+....-..-.......|+..+|..+|......... +......+.+++...|+.+.|..++..+.....
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4445555554442222223344566789999999999988875322 345666788899999999999999998764321
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhHHHHH
Q 038890 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLNHAFYVNL 482 (569)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l 482 (569)
.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+.+.+ -.+..+-..+
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1112222334556666666665555555554456 66677778888899999999998888777644 5577788888
Q ss_pred HHHHHHcCChHHHHHHH
Q 038890 483 CDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~ 499 (569)
+..+.-.|.-+.+..-+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88888888555444433
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=95.39 E-value=0.43 Score=39.31 Aligned_cols=87 Identities=8% Similarity=-0.061 Sum_probs=69.5
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~ 459 (569)
.-+...|++++|..+|.-+.. .. ..+..-|..|..++-..+++++|+..|... -. .-|+..+.....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 345678999999999999884 32 456677888999999999999999999877 11 234445666788899999999
Q ss_pred HHHHHHHHHhh
Q 038890 460 LGEKVAQYLID 470 (569)
Q Consensus 460 ~a~~~~~~~~~ 470 (569)
.|...|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999888
No 244
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.35 E-value=0.14 Score=43.08 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 418 DILSRAGLFSEAERLIRSM--PMEP-----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~--~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
.-+...|++++|..-|.+. -.++ ....|..-..++.+.+.++.|+.-..++++++|....++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3355677777777777666 1111 22345555567788899999999999999999998888888889999999
Q ss_pred ChHHHHHHHHHHHHCC
Q 038890 491 RFDDVKKTRNLMKERG 506 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~g 506 (569)
++++|++-|+++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.31 E-value=0.7 Score=37.12 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcCCCChh
Q 038890 458 VELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|..-|+.+++..|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 45677777777777787653
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.30 E-value=3.6 Score=41.22 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDVFVWGAL 448 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 448 (569)
..+|...+.--...|+.+.+.-+|+...--. ..-...|-..+......|+.+-|..++... +..|....+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c--A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC--ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3566666766677788887777777665211 122345555555555667777777776655 333444443333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+. -..|++..|..+++.+.+.-|....+-..-+....+.|+.+.+.
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 32 34678888888888887655665555555556666777777777
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.26 E-value=1.2 Score=44.07 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=103.1
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
....-.++++.+.++.+.-.-. +..+....+.++..+-+.|..+.|+++... . ..-.....+.|+++.|.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHH
Confidence 3345568888876665411111 112345578888999999999999988442 1 234566778999999988
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 225 LFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
+-++.. +...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+...++.+.....|.
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-------------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 877665 56689999999999999999999999875 245566667778888887777777766652
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
++....++.-.|+.+++.+++.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555667777777776544
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=95.00 E-value=1.6 Score=42.47 Aligned_cols=141 Identities=11% Similarity=0.000 Sum_probs=78.5
Q ss_pred hHHHHHHHhhCC---CCC---hhHHHHHHHHHHHc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 324 VERAYGVFKEMP---KKD---TLAWTAMISVFALN---------GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 324 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
.+.|..+|.+.. +-| ...|..+..++... .+..+|.++-++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 566777777766 333 33444443333221 22345556666666543 235666666666666667
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF---VWGALLGGCQMHGNVELGEKV 464 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~~ 464 (569)
+++.|...|+....-. +....+|........-.|+.++|.+.+++. ...|... .....+..|. ....+.|+.+
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHH
Confidence 7888888887777432 233455555666666678888888877774 5555432 2222222333 3355666666
Q ss_pred HHHH
Q 038890 465 AQYL 468 (569)
Q Consensus 465 ~~~~ 468 (569)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.96 E-value=0.25 Score=44.02 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 038890 327 AYGVFKEMP--KKDTLAWTAMISVFALN-----GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG----------- 388 (569)
Q Consensus 327 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 388 (569)
.+..|..+. ++|-.+|...+..|... ++++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 56777888888777653 567777788899999999999999999998765532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 389 -----LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 389 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
+-+-++.++++|. .+|+.||-.+-..|+.++.+.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3345788999998 899999999999999999888764
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=1.2 Score=36.80 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHhh-cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLID-LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...|.++....-.+-+.. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555444443332 2233344455555555566666666666665544
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.81 E-value=2.7 Score=37.29 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
..........+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34445555556666666666666555432 233445555555556666677777777666533222 111122222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 038890 383 -ACAHSGLVEKGRWCFVMMRHVYLV--EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD--VFVWGALLGGCQMHG 456 (569)
Q Consensus 383 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 456 (569)
.+...|+++.+...+..... ..- ......+......+...++.+.+...+... ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56677777777777777643 210 012333334444456677777777777766 33333 456666677777777
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+++.+...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777765555666666666666677777777766543
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.61 E-value=3.8 Score=38.03 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHhcCC------CCh------hHHHHHHHHHHhCC-ChHHHHHHHHHchhc----cccCCCCccH----
Q 038890 215 RSGDLDVALDLFRRMKK------RNI------FSWNSIITGFVQGG-RAREALELFQEMQSS----SVEEMVKPDK---- 273 (569)
Q Consensus 215 ~~g~~~~A~~~~~~~~~------~~~------~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~----~~~~~~~p~~---- 273 (569)
+.|+++.|..++.+... |+. ..|+.-.. ..+.+ +++.|..++++..+. +-.....|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45566666666655542 111 12333333 33444 777777776665421 0011122222
Q ss_pred -HHHHHHHHHHHccCCHH---HHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 274 -ITIASVLSACAYLGAID---HGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 274 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
.++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+.+.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 34444555555554433 333344444322 12223444344444444555555555555544
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.59 E-value=0.12 Score=29.78 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
.|..+...+...|++++|++.++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666666666666666666666653
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.58 E-value=4.7 Score=38.96 Aligned_cols=150 Identities=10% Similarity=-0.063 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCCHhHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP---NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY-LVEPHVYHY 413 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 413 (569)
...+|..++..+.+.|.++.|...+.++...+..+ .......-+...-..|+..+|...++...... .-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45567788888888888888888888877643221 22333334555667788888888887777411 101111111
Q ss_pred HHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 414 ACMIDILSRAGLFSEAERL-IRSMPMEPDVFVWGALLGGCQMH------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
..+...+.. ..+..... ........-..++..+...+... ++.+++...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000112333334444444 7888999999999999998888888877766
Q ss_pred HHc
Q 038890 487 AKA 489 (569)
Q Consensus 487 ~~~ 489 (569)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 544
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.55 E-value=2.1 Score=34.82 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS 421 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (569)
...++..+...+........++.+...+. .+....+.++..|++.+ .+.....++. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34566666667778888888888777653 45667777777777653 3344444442 122233445777788
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 422 RAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+.+.++++..++.+++.. ...+..+... ++++.|.+++.+ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888888888888887532 2222333333 778888887775 3456677777766543
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.52 E-value=0.091 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34566666666677777777777777666664
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=0.7 Score=42.89 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-----CCc
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP---DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL-----DCD 307 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 307 (569)
.|-.+.+++-+.-++.+++.+-+.-.. ..|..| -......+..++...+.++++.+.|+.+.+... ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~---lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLG---LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc---CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 455566666666666666666655442 223333 112333456677777788888888887765321 223
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC-------CChh------HHHHHHHHHHHcCChhHHHHHHHHHHH----CCC
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK-------KDTL------AWTAMISVFALNGYGKEAFDTFREMEA----EGV 370 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~ 370 (569)
..++..|...|.+..|+++|.-+..+..+ .|.. +...|..++-..|....|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 56788899999999999888766554432 2222 233455567777888888877776543 443
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 371 RPN-HVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
+|. ......+...|...|+.+.|..-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 2355667778888999998887777654
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.44 E-value=6.2 Score=39.77 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 038890 186 GFVTSARMLFDEMSN--RDVVSWNAMI-IGYLRSGDLDVALDLFRRMKKR-------NIFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 186 g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
.+.+.|.++++.+.+ |+...|...- +.+...|++++|++.|++.... ....+.-++-.+.-.++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345556666666555 5544443322 3344456666666666654321 11223334445555566666666
Q ss_pred HHHHch
Q 038890 256 LFQEMQ 261 (569)
Q Consensus 256 ~~~~m~ 261 (569)
.|..+.
T Consensus 327 ~f~~L~ 332 (468)
T PF10300_consen 327 YFLRLL 332 (468)
T ss_pred HHHHHH
Confidence 666665
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.40 E-value=0.33 Score=43.26 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=86.3
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc---------
Q 038890 82 SYATNVFSHIK--RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKR--------- 150 (569)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 150 (569)
-..+..|.... +++-.+|-.++..+... +....++.+--...++.|.+.|+.-|..+|..||+.+-+.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~-sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEK-SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 34445566665 56777887777776544 2223445556677788999999999999999999876432
Q ss_pred -------CCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHhhcCC
Q 038890 151 -------LDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF-VTSARMLFDEMSN 200 (569)
Q Consensus 151 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 200 (569)
.+-+-+.+++++|...|+.||..+-..|+.++.+.|. ..+..+++-+|.+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2345688999999999999999999999999999886 3455555555543
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=1.9 Score=39.79 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=111.8
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHH
Q 038890 319 GKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFV----GLLSACAHSGLVE 391 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~ 391 (569)
...|+..+|-..++++.+ .|..++.-.=.++...|+.+.-...+++.... ..||...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777765 36777777778899999999988899888754 345554333 3344556889999
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM--EP----DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p----~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
+|++.-++..+.+ +.|.-.-.++...+...|++.++.++..+-.. +. -...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988887544 45666677888888999999999999887621 11 1123333334456678999999999
Q ss_pred HHHh--hcCCCChhHHH
Q 038890 466 QYLI--DLDPLNHAFYV 480 (569)
Q Consensus 466 ~~~~--~~~p~~~~~~~ 480 (569)
++-+ +.+.++.....
T Consensus 271 D~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARD 287 (491)
T ss_pred HHHHHHHhhccchhhhh
Confidence 8644 46667766654
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=7.3 Score=40.22 Aligned_cols=319 Identities=10% Similarity=0.010 Sum_probs=178.2
Q ss_pred CCCCCCcccHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHhhcCC--
Q 038890 131 TGISPDCLTFPF-----LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF---VTSARMLFDEMSN-- 200 (569)
Q Consensus 131 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-- 200 (569)
-|++.+..-|.. +|.-+...+.+..|.++-..+...-.. ...+|.....-+.+..+ -+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356555554544 455566778888888887766332111 14667777777776632 2333344444444
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccc-------
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKR--------NIFSWNSIITGFVQGGRAREALELFQEMQSSSV------- 265 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------- 265 (569)
....+|..+.+.--..|+++-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+.+.-.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999988765532 222344555666777777777666666542100
Q ss_pred cCCCCccHHHHHHHHH---------HHHccCCHHHHHHHH-HHHHH-hCCCCcchhHHHHHHHHHhcCChHHHH------
Q 038890 266 EEMVKPDKITIASVLS---------ACAYLGAIDHGKWVH-GYLRR-SGLDCDVVIGTALVDMYGKCGCVERAY------ 328 (569)
Q Consensus 266 ~~~~~p~~~~~~~ll~---------~~~~~~~~~~a~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~------ 328 (569)
....+.....|.-+++ .|....+......+. +.... ..+.+-..........+.+.....-..
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 0001111111222211 011111111111111 11000 000111111222333333333211111
Q ss_pred ----HHHhhCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 329 ----GVFKEMPKK-----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 329 ----~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
.+.+.+... ...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.++...+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 111111111 12344555667778899999988877654 47888888888999999999876665544
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
.+ .+..|...+.+|.+.|+.++|..++-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 33 25678889999999999999999999884332 456778888888888776544
No 262
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.32 E-value=8.1 Score=40.60 Aligned_cols=116 Identities=8% Similarity=-0.065 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHV--YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
..+.+.|...+........+.+.. .++..+.......+...+|...++.. ....+......-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345566777777665444333322 22333433333332245666666654 222233334444444456777777777
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 464 VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.+..|-...........-+++++...|+.++|..+|+.+
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665433344555566677766677777777777765
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.10 E-value=3 Score=34.79 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=14.2
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCCc
Q 038890 126 KQMLCTGISPDCLTFPFLLKECTKRLDG 153 (569)
Q Consensus 126 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 153 (569)
+.+.+.+++|+...|..++..+.+.|.+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3333445555555555555555555543
No 264
>PRK09687 putative lyase; Provisional
Probab=94.01 E-value=5.1 Score=37.14 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh----HHHHHHHHHc
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRA----REALELFQEM 260 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m 260 (569)
+|.......+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444444444444444332222222222334444444444445555442 3444455444
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.00 E-value=4.1 Score=36.07 Aligned_cols=197 Identities=14% Similarity=0.018 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHH-H
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRS-GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMIS-V 348 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 348 (569)
..+......+...+.+..+...+...... ........+......+...+++..+...+...... +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444431 22333444445555555556666666666655432 1122222233 6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHc
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRP----NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRA 423 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 423 (569)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 7778888888888888755 232 23344444444667788999999988888543 23 367788888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 424 GLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 424 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999988888 44554 445555555555777899999999999988876
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.96 E-value=12 Score=41.06 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=58.1
Q ss_pred CccHHHHHHHHHH----HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHH---
Q 038890 270 KPDKITIASVLSA----CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAW--- 342 (569)
Q Consensus 270 ~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 342 (569)
.|+...+..+..+ +.....++.|.-.|+..-+. ...+.+|..+|+|.+|+.+..++...-....
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 4566555555444 44566677776666554332 3456778888888888888887776533222
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
..|+.-+...+++-+|-++..+...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 5677777788888888777776553
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.78 E-value=0.89 Score=35.51 Aligned_cols=88 Identities=13% Similarity=-0.054 Sum_probs=51.6
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVF---VWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~l~~~~~~~~ 456 (569)
....|+.+.|++.|....... +.....||.-..++.-.|+.++|++-+++. +-+ ... .|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 445666666666666655322 445566666666666667777666666655 211 111 2223333466677
Q ss_pred CHHHHHHHHHHHhhcCCC
Q 038890 457 NVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~ 474 (569)
+.+.|..-|+.+.+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777666644
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.76 E-value=3.1 Score=33.80 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG 217 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (569)
.....++..+...+.......+++.+.+.+. .+...++.++..|++.+. ......++. ..+.......++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3455677777777888889999999888874 577888999999987643 444455442 233444555677777777
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhC-CChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQG-GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA 284 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~ 284 (569)
-++++.-++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~----------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ----------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC----------CCHHHHHHHHHHHH
Confidence 77777777776643 22233333333 6677777766652 23445555555443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.59 E-value=0.18 Score=29.63 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988854
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=4.9 Score=35.44 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCChhHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-------PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDL----DPLNHAFY 479 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 479 (569)
.|....+.+++...+++|-..+.+- .--|+. ..|...+-.+.-..|+..|+..++...++ .+++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444555566666666665544433 112222 23444455555666777788777776553 36667777
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~ 499 (569)
..|+.+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77776664 46666666544
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.49 E-value=13 Score=40.75 Aligned_cols=141 Identities=17% Similarity=0.083 Sum_probs=79.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 179 ISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
++.--+.|-+.+|+.++..=.+.-...|.+....+.....+++|.-.|+..-+. ...+.+|...|+|.+|+.+..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHH
Confidence 333345555566555544322223344555556666677777777666665432 234567777888888888887
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK 337 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 337 (569)
++. .+-.--..+-..|..-+...+++-+|-++..+.... ....+..|++...|++|.++-....+.
T Consensus 990 ql~-----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 990 QLS-----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred hhc-----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 774 111111111245556666677777776666655432 123445566677777777776555443
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.48 E-value=2.8 Score=36.19 Aligned_cols=62 Identities=6% Similarity=-0.057 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH--HHccCCcHHHHHHHHHHHHhC
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKE--CTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g 167 (569)
..||.+.--+...|+++ .|.+.|+...+-+ |. .-|..+=++ +.-.|++..|.+=+...-+.+
T Consensus 100 ~vfNyLG~Yl~~a~~fd------aa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 100 EVFNYLGIYLTQAGNFD------AAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHhcccch------HHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 45555555556666666 6666666665522 21 112222111 223455666555555554443
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.43 E-value=2.6 Score=41.29 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+++.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455555666666666666666655443 344556666666666666666666666543
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.35 E-value=5.9 Score=38.94 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMP-M-EPDV--FVWGALLGGCQ 453 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 453 (569)
.-+..++.+.|+.++|.+.+.++.+.............|+.++...+.+.++..++.+.. + -|.. .+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 446667778999999999999998655322344577889999999999999999998872 2 2333 35555443333
Q ss_pred hcCC---------------HHHHHHHHHHHhhcCCCCh
Q 038890 454 MHGN---------------VELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 454 ~~~~---------------~~~a~~~~~~~~~~~p~~~ 476 (569)
..++ -..|.+.+.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 1245677888888776544
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.29 E-value=8.4 Score=37.35 Aligned_cols=50 Identities=6% Similarity=-0.056 Sum_probs=33.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
...|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|..++..+.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 345677666554444444 66777777777777777777777777777654
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.27 E-value=0.66 Score=42.22 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++..++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666666666666666643
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.27 E-value=2.1 Score=39.94 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=95.4
Q ss_pred CCCCCCCCHHHHHHHHHhhcC-----hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCC----ChhHHHHHhhc
Q 038890 20 SPPNKESTKLILRNAIDECKN-----MRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSG----SLSYATNVFSH 90 (569)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g----~~~~A~~~~~~ 90 (569)
-.+........++.++...+. +.+...+++.+.+.|...+. .++....-........ ....|.++|+.
T Consensus 52 fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~---y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~ 128 (297)
T PF13170_consen 52 FSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSE---YLYLAALIILEEEEKEDYDEIIQRAKEIYKE 128 (297)
T ss_pred cccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccC---hHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 344555667788888887776 45567899999999998888 5554433333331102 23578889998
Q ss_pred CCC-------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHc-cCC--cHHHHHH
Q 038890 91 IKR-------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTK-RLD--GLVGASV 159 (569)
Q Consensus 91 ~~~-------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~-~~~--~~~a~~~ 159 (569)
|++ ++...+..++.. ...+ -+.-.+.+..+|+.+.+.|...+.. -+.+-+-++.. ..+ ...+..+
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~--~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSED--VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 884 233444444432 2222 2233457888899998888776443 33333333332 222 3467788
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 038890 160 YGQVVKFGVCDDVFVQNSVISL 181 (569)
Q Consensus 160 ~~~~~~~g~~~~~~~~~~l~~~ 181 (569)
++.+.+.|+++....|..+.-.
T Consensus 205 ~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHcCCccccccccHHHHH
Confidence 9999999988777777654433
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=13 Score=39.13 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=72.1
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
|++++|...|-+-...-.. ..+|.-|....... .--..++.+.+.|+ .+...-..|+.+|.+.++.+.-.+
T Consensus 382 gdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~Ik------nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIK------NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred CCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHH------HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHH
Confidence 7777777666554321111 12444444444444 55666667766664 355555666777777777766555
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 159 VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 159 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
..+..- .|.. ..-....+..+.+.+-.++|..+-.+... .... +--.+-..+++++|++.+..++
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 544332 2211 11233455666666666666666544433 1111 1222334667777777777776
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.92 E-value=6.6 Score=35.12 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH----h-CCCCcch
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMV--KPDKITIASVLSACAYLGAIDHGKWVHGYLRR----S-GLDCDVV 309 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~ 309 (569)
...++..+.+.|++++....|.+++..- ...+ .-+..+.+.++...+.+.+.+....+|+.-.+ . +-..--.
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYI-kSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYI-KSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445667777777777777777764210 0001 12344566666666666666555555543222 1 1122234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC---------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCC
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPKK---------------DTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPN 373 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 373 (569)
+...|...|...|.+.+..+++.++... -...|..-|..|....+-.+-..+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 5567888888888888888888776531 13467777788888888888888888766422 2344
Q ss_pred HHHHHHHHHHH-----HccCCHHHHHHHHHHhHHhcCC--CCCHh---HHHHHHHHHHHcCC----HHHHHHHHHhCCCC
Q 038890 374 HVTFVGLLSAC-----AHSGLVEKGRWCFVMMRHVYLV--EPHVY---HYACMIDILSRAGL----FSEAERLIRSMPME 439 (569)
Q Consensus 374 ~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 439 (569)
+.. ..+|+-| .+.|.+++|..-|-+.-+.+.- .|... -|..|...+.+.|- ..+| +..+..
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNd 301 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKND 301 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCC
Confidence 333 3344444 4568888886544444323321 23222 24455555555541 1111 001234
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
|.......++.+|. .++..+.++++..-.+
T Consensus 302 PEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 55566777887774 4466666666555444
No 280
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.76 E-value=2 Score=33.89 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 439 EPDVFVWGALLGGCQMHG---NVELGEKVAQYLID-LDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.++..+-..+..++.+.. +..+.+.+++.+.+ -.|. .......|+-++.+.|+|+.+.++.+.+.+.. |
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--~---- 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--P---- 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--C----
Confidence 344444455555555443 34566667777665 2233 23344456666777777777777777765522 2
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
+..++.++-+.+.+.|...|++
T Consensus 103 ---------------------~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 103 ---------------------NNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ---------------------CcHHHHHHHHHHHHHHhhccee
Confidence 2335555556666777777654
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=6.7 Score=34.38 Aligned_cols=90 Identities=9% Similarity=-0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHhhcCCCChhH-------
Q 038890 415 CMIDILSRA-GLFSEAERLIRSM-----PMEPDVFVWGALLG---GCQMHGNVELGEKVAQYLIDLDPLNHAF------- 478 (569)
Q Consensus 415 ~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~------- 478 (569)
.+...|-.. .++++|+..|+.. +.+.+...-..++. --...+++.+|+++|++......+|+..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555443 5677777777766 22333333333333 3467889999999999998765544322
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..-+-++.-.++.-.+...+++..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 22222233333454455555555444
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.49 E-value=0.94 Score=36.47 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=35.0
Q ss_pred HcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 422 RAGLFSEAERLIRSM-PMEP---DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
..++++++..+++.+ -..| ...++... .+...|++++|.++|+.+.+..+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666666666666 2233 22333222 23456666666666666666555544444444444444444
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.47 E-value=1.2 Score=36.61 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=43.6
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 421 SRAGLFSEAERLIRSM-PMEPDVFVWGAL-LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
.+.++.+++..++..+ -..|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4667777777777777 334433322211 2234577788888888888777777666555555555555554
No 284
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.13 E-value=0.39 Score=29.75 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=23.5
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHH
Q 038890 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNS 177 (569)
Q Consensus 139 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 177 (569)
++..+..++...|++++|.++|+++++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4555666677777777777777777776533 4444443
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.99 E-value=0.48 Score=43.51 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=69.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 457 (569)
-..-|.+.|.+++|+..|....... +-+++++..-..+|.+..++..|+.-.... .+. .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3556888999999999998877433 338888888889999999888887766655 211 112345555555556778
Q ss_pred HHHHHHHHHHHhhcCCCChhH
Q 038890 458 VELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~ 478 (569)
..+|.+-++.+++++|.+...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 888888888888899986543
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=19 Score=37.98 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHhhcChHHH----HHHHHHHHhcC----------CCCCCchhHHHHHHHHHhhcCCCCChhHHHHHh
Q 038890 23 NKESTKLILRNAIDECKNMREL----KEIHTQIIKSP----------CLQTNDHHSLITRLLFFCALSVSGSLSYATNVF 88 (569)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~a----~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 88 (569)
..+...+....++..++++--- ..+.+.+..-+ ..... .+.....-+....+. ..++-|..+.
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L-~ek~le~kL~iL~kK--~ly~~Ai~LA 357 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHEL-IEKDLETKLDILFKK--NLYKVAINLA 357 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeee-eeccHHHHHHHHHHh--hhHHHHHHHH
Confidence 3556667778888888764332 23333333333 00000 002233344455555 7788888877
Q ss_pred hcCCCCCc---ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 89 SHIKRSDL---YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 89 ~~~~~~~~---~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
+.-..+.. ........-+.+.|+++ .|...|-+-+.. +.|. .++.-+........--.+++.+.+
T Consensus 358 k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~------~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~ 425 (933)
T KOG2114|consen 358 KSQHLDEDTLAEIHRKYGDYLYGKGDFD------EATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHK 425 (933)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 76543322 12222334456678888 998888877653 3333 345555555555556677888888
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 038890 166 FGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRD-VVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF 244 (569)
Q Consensus 166 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 244 (569)
.|+. +...-..|+.+|.+.++.+.-.++.+....-. ..-....+..+.+.+-.++|..+=..... +.. .+.-.+
T Consensus 426 ~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~---vl~ill 500 (933)
T KOG2114|consen 426 KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEW---VLDILL 500 (933)
T ss_pred cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHH---HHHHHH
Confidence 8876 55555679999999999999888877765311 11233455555566666666555444433 222 233344
Q ss_pred HhCCChHHHHHHHHHch
Q 038890 245 VQGGRAREALELFQEMQ 261 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~ 261 (569)
-..+++++|++.+..+.
T Consensus 501 e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCHHHHHHHHhcCC
Confidence 56788999999998874
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=18 Score=37.74 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKKDT 339 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 339 (569)
.....|+..|...+++..|..++-...+++.
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3344588999999999999999988887643
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.86 E-value=5.7 Score=33.03 Aligned_cols=127 Identities=12% Similarity=-0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC--CcccHHHHH---
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS--DLYTYNIMI--- 103 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li--- 103 (569)
+..+.-+...+..++|..-|..+.+.|...-|. ..........+.. |+...|...|+++-.. .+....-+.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~Ypv--LA~mr~at~~a~k--gdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPV--LARMRAATLLAQK--GDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhhc--ccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444455677777777777777776655551 1222223333444 7777777777776531 111111111
Q ss_pred --HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 104 --RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 104 --~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
-.+..+|.++ ....-.+.+-..+-+--...-..|.-+..+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYD------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHH------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1233445554 4444444443322111111222333444556666666666666655
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.33 Score=28.46 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+|..|...|.+.|++++|+++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777778888888888888887543
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.83 E-value=0.34 Score=39.71 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=63.0
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 038890 141 PFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 141 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (569)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|-++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345677777888888889999998877666788899999999999888888888774333 33345666677777777
Q ss_pred HHHHHHHhcC
Q 038890 221 VALDLFRRMK 230 (569)
Q Consensus 221 ~A~~~~~~~~ 230 (569)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 7777766654
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.77 E-value=9.3 Score=34.19 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+..-|.+.|.+-.|..-++.+++.-|... ..+..+..+|.+.|-.++|...-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34557889999999999999998766644 44566778899999999998877665443
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.61 E-value=20 Score=37.74 Aligned_cols=191 Identities=15% Similarity=0.186 Sum_probs=115.6
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH-CCCCC--CcccHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCC
Q 038890 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC-TGISP--DCLTFPFLLKECT-KRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~ 169 (569)
.++..|..+|. .|+..++...+ ..+.| +..++..+...+. ...+++.|+..+.+.....-.
T Consensus 28 ~~l~~Y~kLI~---------------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~ 92 (608)
T PF10345_consen 28 EQLKQYYKLIA---------------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER 92 (608)
T ss_pred hhHHHHHHHHH---------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46778888885 78888888884 34444 3345555666655 678999999999987665433
Q ss_pred CcH-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C--ChhH----HHHH-HHHHHhcCCHHHHHHHHHhcCC----
Q 038890 170 DDV-----FVQNSVISLFMACGFVTSARMLFDEMSN--R--DVVS----WNAM-IIGYLRSGDLDVALDLFRRMKK---- 231 (569)
Q Consensus 170 ~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~~----~~~l-~~~~~~~g~~~~A~~~~~~~~~---- 231 (569)
++. .....++..+.+.+... |...+++..+ . .... +..+ +..+...++...|.+.++.+..
T Consensus 93 ~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 93 HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 222 12335667777777665 8888777654 1 1122 2222 2223334799999999988753
Q ss_pred -CC--hhHHHHHHHHH--HhCCChHHHHHHHHHchhccc-----cCCCCccHHHHHHHHHHH--HccCCHHHHHHHHHHH
Q 038890 232 -RN--IFSWNSIITGF--VQGGRAREALELFQEMQSSSV-----EEMVKPDKITIASVLSAC--AYLGAIDHGKWVHGYL 299 (569)
Q Consensus 232 -~~--~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~-----~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~ 299 (569)
.+ ..++-.++.+. .+.+..+++.+.++.+..... .....|...++..++..+ ...|+++.+...++++
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 23333444433 355667777777776632100 111345667777777665 4677777777666665
Q ss_pred H
Q 038890 300 R 300 (569)
Q Consensus 300 ~ 300 (569)
.
T Consensus 252 q 252 (608)
T PF10345_consen 252 Q 252 (608)
T ss_pred H
Confidence 4
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.59 E-value=5.7 Score=31.36 Aligned_cols=133 Identities=9% Similarity=0.053 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHH
Q 038890 319 GKCGCVERAYGVFKEMPK-KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV---TFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 394 (569)
.-.|..++..++..+... .+..-+|-+|.-....-+.+-..++++..-+- .|.. -...++.++...|
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n------ 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRN------ 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhc------
Confidence 445788888888877665 35556777776666666666666666655431 1221 1222333333322
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+.......++.+...|+-+.-.+++.+. .-++++.....+..+|.+.|+..++.+++.++-+.+
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 23344556677788888888888888887 456888888899999999999999999999888766
Q ss_pred C
Q 038890 473 P 473 (569)
Q Consensus 473 p 473 (569)
-
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
No 294
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.38 E-value=0.44 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+|..+...+...|++++|...|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555556666666666666666666555
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=3.2 Score=37.92 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=75.1
Q ss_pred hCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 038890 302 SGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDT------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV 375 (569)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 375 (569)
.|.+....+...++..-....+++.+...+-++..... .+-...++.+ ..-+.++++.++..=+..|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 45566666677777777777888999888877765311 1111222222 3346779999999889999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
+++.++..+.+.+++..|.++...+....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887777443
No 296
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=40 Score=40.30 Aligned_cols=317 Identities=8% Similarity=0.002 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCC
Q 038890 177 SVISLFMACGFVTSARMLFDEM----SNRD-VV-SWNAMIIGYLRSGDLDVALDLFRR-MKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 249 (569)
.+..+-.++|.+..|...++.- .+.+ .. -|-.+...|..-+++|....+... ...++. ..-+.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555667888899999888883 2211 12 344444588888888888877773 444443 233444567899
Q ss_pred hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc-hhHHHHHHHHHhcCChHHHH
Q 038890 250 AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV-VIGTALVDMYGKCGCVERAY 328 (569)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 328 (569)
+..|...|+.+.+.+ ++...+++-++......+.+....-..+...... ++.. ..++.=+.+--+.+++|...
T Consensus 1465 ~~da~~Cye~~~q~~-----p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-----PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHHHHHHHHHhhcCC-----CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 999999999986321 3336677777777777777777666554444332 2222 22333345557778888877
Q ss_pred HHHhhCCCCChhHHHHH--HHHHHHcC--ChhHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHccCCHHHHHH
Q 038890 329 GVFKEMPKKDTLAWTAM--ISVFALNG--YGKEAFDTFREMEAEGVRP--------N-HVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 329 ~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.... ..+...|... +..+.+.. +.-.-.+.++.+.+.-+.| + ...|..++....-. +.+...+
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~ 1614 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE 1614 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7766 4444555444 22222221 2111112333332211111 0 12233333222111 1111111
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEP-----DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
.+...........+..-|..-+..-....+..+-+--+++. ...| -..+|....+.+...|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111100000111122222222111111111111112221 1122 24588888888999999999999988
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 467 YLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 467 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.+.+..++ ..+...+.-+...|+...|+.++++-.+...+
T Consensus 1695 ~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1695 NAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88887744 57888889999999999999999998766543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.06 E-value=6.9 Score=33.33 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
+..+...|++.|+.+.|.+.|.++.+....|.. ..+..+++.+...+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444455555555555555555444333322 233444444555555555555444443
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.01 E-value=6.6 Score=33.50 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=68.5
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 456 (569)
+...|++++|..-|....... ++. ...|..-..++.+.+.++.|+.-..+. .+.|+. ..+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 456778888877777776543 222 245566666778888888888777665 555532 34444455688888
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
.++.|++-|+++.+.+|....+....++.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999876655554443
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.85 E-value=2.3 Score=27.55 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCc
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (569)
....++-++.+.|++++|.++.+.+.+. .| ....+.++-+.+.+.|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP-------------------------~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EP-------------------------DNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-------------------------S-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CC-------------------------CcHHHHHHHHHHHHHHhccCC
Confidence 3456778899999999999999999773 23 456778888888889988874
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=4.9 Score=40.27 Aligned_cols=132 Identities=12% Similarity=0.005 Sum_probs=77.7
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRAN 106 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 106 (569)
....++..|...|-.++|+.+ .+++. .-+...++. |+++.|.++..+. .+...|..|..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d--~rFelal~l------grl~iA~~la~e~--~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPD--QRFELALKL------GRLDIAFDLAVEA--NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChh--hhhhhhhhc------CcHHHHHHHHHhh--cchHHHHHHHHHH
Confidence 445666666666666666544 22221 233333333 7777777665443 4567777888887
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 038890 107 ACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG 186 (569)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 186 (569)
...+++. .|.+.|.+..+ |..|+-.+...|+.+....+-....+.|.. |....+|...|
T Consensus 677 l~~~~l~------lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g 735 (794)
T KOG0276|consen 677 LSAGELP------LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSG 735 (794)
T ss_pred hhcccch------hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcC
Confidence 8888877 77777776654 445666666667666555555555555522 22223455667
Q ss_pred CHHHHHHHHhhc
Q 038890 187 FVTSARMLFDEM 198 (569)
Q Consensus 187 ~~~~A~~~~~~~ 198 (569)
+++++.+++.+-
T Consensus 736 ~~~~C~~lLi~t 747 (794)
T KOG0276|consen 736 DYEECLELLIST 747 (794)
T ss_pred CHHHHHHHHHhc
Confidence 777776665543
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.56 E-value=0.71 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999998764
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.54 E-value=19 Score=35.61 Aligned_cols=159 Identities=12% Similarity=0.102 Sum_probs=88.2
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIG 212 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 212 (569)
|.....+++..+..+..+.-...+..+|+..| -+...+-.++.+|... ..+.-..+++++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45556666777777777777777777777765 2455566677777666 44555666665544 333333344444
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCh---hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKK------RNI---FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSAC 283 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~ 283 (569)
|-+ ++.+.+...|.++.. .+. ..|..+... -..+.+..+.+...+.. ..|..--...+.-+-.-|
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt---~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT---KLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH---hhccchHHHHHHHHHHHh
Confidence 433 666666666655431 111 134443331 13445555555555543 333334445555555666
Q ss_pred HccCCHHHHHHHHHHHHHhC
Q 038890 284 AYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~ 303 (569)
....++.+|.+++..+.+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 67777777777777666544
No 303
>PRK09687 putative lyase; Provisional
Probab=90.21 E-value=15 Score=33.99 Aligned_cols=218 Identities=9% Similarity=-0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL 143 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 143 (569)
.+....+..+... |..+....+...+..+|...-...+.++..-|+.... .++++..+..+... .|+...-...
T Consensus 38 ~vR~~A~~aL~~~--~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 38 LKRISSIRVLQLR--GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred HHHHHHHHHHHhc--CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 5566666666666 5444333333333445665556666666666653200 01566666666432 2555555455
Q ss_pred HHHHHccCCc-----HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-
Q 038890 144 LKECTKRLDG-----LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG- 217 (569)
Q Consensus 144 l~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g- 217 (569)
+.++...+.. ..+...+.... ..++..+--..+.++++.|+.+....+..-+..+|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 5555444321 12222222222 22344555556666666666443333333333355555444555555432
Q ss_pred CHHHHHHHH-HhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 218 DLDVALDLF-RRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 218 ~~~~A~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
+...+...+ ..+..++..+-...+.++.+.|+. .|+..+-... .. ++ .....+.++...|+. ++...+
T Consensus 189 ~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L----~~---~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 189 DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKEL----KK---GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHH----cC---Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 122333333 333345555666666666666663 3444444443 21 11 123455555555554 455555
Q ss_pred HHHHH
Q 038890 297 GYLRR 301 (569)
Q Consensus 297 ~~~~~ 301 (569)
..+.+
T Consensus 258 ~~l~~ 262 (280)
T PRK09687 258 DTLLY 262 (280)
T ss_pred HHHHh
Confidence 55544
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.98 E-value=30 Score=36.92 Aligned_cols=215 Identities=14% Similarity=-0.001 Sum_probs=109.1
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcch-------hHHHHH-HHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVV-------IGTALV-DMYGKCGCVERAYGVFKEMPK--------KDTLAWTAMIS 347 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 347 (569)
....++.+|..+..++...-..|+.. .++.|- ......|+++.|.++.+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556677776666655432222221 112221 122345777777777665432 24556677777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHccCCH--HHHHHHHHHhHHhcCCC-----CCHhHHHH
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTF---VGLL--SACAHSGLV--EKGRWCFVMMRHVYLVE-----PHVYHYAC 415 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll--~~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~~~ 415 (569)
+..-.|+++.|..+..+..+..-.-+...+ ..+. ..+...|+. ......|......+.-. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 788889999888887766543222233222 2222 234456632 23333344333222111 11233444
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-----CCCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhHHH---H
Q 038890 416 MIDILSRAGLFSEAERLIRSM-----PMEPDV--F--VWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAFYV---N 481 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---~ 481 (569)
+..++.+ .+.+..-.... ...|.. . .+..|+......|+.+.|...++++......+ ...|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 44443332222 112222 2 22366777888999999999998887643221 11222 2
Q ss_pred HH--HHHHHcCChHHHHHHHHH
Q 038890 482 LC--DMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 482 l~--~~~~~~g~~~~A~~~~~~ 501 (569)
.+ ......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223457888888877665
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.98 E-value=5.2 Score=38.86 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=46.6
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+...|+++.+.+.+... -+.....+..+++......|+++.|....+.|...+-.++.+....+......|-++++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44555666665555554 1222344555555666666666666666666665554444444444444444555666666
Q ss_pred HHHHHHHCC
Q 038890 498 TRNLMKERG 506 (569)
Q Consensus 498 ~~~~m~~~g 506 (569)
.|+++....
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 666654433
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.98 E-value=0.87 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57889999999999999999999998764
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.95 E-value=2.6 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR 434 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (569)
++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3333333444444444444443222 2333444444444444444444444443
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.83 E-value=0.52 Score=27.21 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 038890 160 YGQVVKFGVCDDVFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 160 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 192 (569)
|++.++..+. +...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555533 6677777777777777777764
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.65 E-value=5.9 Score=33.73 Aligned_cols=92 Identities=11% Similarity=-0.059 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhHHH---
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM---PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLNHAFYV--- 480 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~--- 480 (569)
..+..+...|.+.|+.+.|.+.|.++ ...| -...+..++......+++..+...+.++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777788888888888888877 1122 23456667777777888888888877776532 22221111
Q ss_pred -HHHHHHHHcCChHHHHHHHHHH
Q 038890 481 -NLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 481 -~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.-+-.+...|++.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1222345567888888877653
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.65 E-value=0.6 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677788888888888887765
No 311
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.56 E-value=30 Score=36.42 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHH-hhcChHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC----Cc
Q 038890 24 KESTKLILRNAID-ECKNMRELKEIHTQIIKSPCLQTND--HHSLITRLLFFCALSVSGSLSYATNVFSHIKRS----DL 96 (569)
Q Consensus 24 ~~~~~~~~~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~ 96 (569)
...+...++.+|. ...+++.|+..++......-.+... .......+++.|.+. +... |.+..++..+. ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~--~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT--NPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc--CHHH-HHHHHHHHHHHHhccCc
Confidence 3446667888877 5578999999998775443222221 123344667777776 5544 88888876531 12
Q ss_pred ccHHHHHH-----HHhcCCCCCCCCChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHH--ccCCcHHHHHHHHHHHHh
Q 038890 97 YTYNIMIR-----ANACKSSETNDTHSGKCLKLYKQMLCTG---ISPDCLTFPFLLKECT--KRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 97 ~~~~~li~-----~~~~~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 166 (569)
..|....+ .+...+++. .|++.++.+...- ..|-...+..++.++. +.+..+.+.+..+.+...
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~------~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYN------AALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 23333222 222235776 8999999887642 2233444555555543 456677777777777443
Q ss_pred CC---------CCcHhHHHHHHHHH--HhcCCHHHHHHHHhhcC
Q 038890 167 GV---------CDDVFVQNSVISLF--MACGFVTSARMLFDEMS 199 (569)
Q Consensus 167 g~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 199 (569)
.. .|...++..+++.+ ...|+++.+...++.+.
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 23456666666654 46688778877776654
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.34 E-value=12 Score=31.36 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCCCChh
Q 038890 158 SVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG--DLDVALDLFRRMKKRNIF 235 (569)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~ 235 (569)
++++.+.+.++.|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... -..-|++++.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 456666778899999999999999999999988888776544455544444443333221 2455666666664 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR 301 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 301 (569)
.+..++..+...|++-+|+++.+...+ . +......++.+..+.+|...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~---~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK---V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC---c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677889999999999999988531 1 111224456666666666655555555544
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.20 E-value=0.87 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
..++.+.|++++|.+.|+++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3334444444444444444444444
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.88 E-value=34 Score=36.03 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHHHHhcCCCCCC-CCChhHHHHHHHHHHHCC
Q 038890 68 RLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIRANACKSSETN-DTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 68 ~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~-~~~~~~A~~~~~~m~~~g 132 (569)
.++..+.++ |.+++|.++..... ++....+-..+..+....+..- ...-++...-|++..+..
T Consensus 116 a~Iyy~LR~--G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRC--GDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTT--T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhc--CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 445666777 99999999984333 3445666677777766533221 111224555566666543
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.82 E-value=61 Score=38.92 Aligned_cols=304 Identities=7% Similarity=-0.044 Sum_probs=157.1
Q ss_pred HHHccCCcHHHHHHHHHH----HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhcCCHH
Q 038890 146 ECTKRLDGLVGASVYGQV----VKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE-MSNRDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 220 (569)
+-.+.+.+..|.-.++.- ++.. .....+-.+...|+.-+++|....+... ...++. ...|......|++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHH
Confidence 444667888888888773 2211 1223444556699999999998888773 333443 23455677899999
Q ss_pred HHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHH-HHHHHHHccCCHHHHHHHH
Q 038890 221 VALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA-SVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 221 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~ 296 (569)
.|...|+++.+ |+ ..+++.++......|.++.+.-..+... ....+....++ .-+.+--+.++++.....+
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-----~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI-----INRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh-----hccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999986 33 5578888887778888887777555553 22233333333 3344446677777766665
Q ss_pred HHHHHhCCCCcchhHHH--HHHHHHhcCChH--HHHHHHhhCC----CC---------ChhHHHHHHHHHHHcCChhHHH
Q 038890 297 GYLRRSGLDCDVVIGTA--LVDMYGKCGCVE--RAYGVFKEMP----KK---------DTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~----~~---------~~~~~~~li~~~~~~g~~~~A~ 359 (569)
. +. +..+|.. ++....+..+-| .-.+..+.+. .+ -...|..++..+.-..-.....
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 11 1111211 222222111110 0001111111 00 0123333333322211110000
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHH----hHHhcCCC-CCHhHHHHHHHHHHHcCCHHH
Q 038890 360 DTFREMEAEGVRPNHV------TFVGLLSACAHSGLVEKGRWCFVM----MRHVYLVE-PHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 428 (569)
.+ .+..++.. -|..-+.--....+..+-+-.+++ ...+.+.. .-..+|....+....+|+++.
T Consensus 1615 ~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1615 EL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred Hh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 00 11222221 111111111111111111111111 11111111 224678888888888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
|...+-.++..--+..+...+..+...|+...|..+++..++..
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98876666222233455566777889999999999999998744
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.57 E-value=1.2 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
++.|+..|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444444444444444443
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.54 E-value=4 Score=30.44 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+.+- ....|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 33466677777777788899999999999999999999999999999877653 23367666643
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.46 E-value=1.1 Score=26.96 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
..+++.+...|...|++++|..+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578899999999999999999998865
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.82 E-value=5 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
+.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++|+-++.+.+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556777777777778889999999999999999999999999998886554 24446666554
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.64 E-value=4 Score=34.22 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 428 EAERLIRSM-PMEPDV-FVWGALLGGCQMHG-----------NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 428 ~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
+|+.-|++. .+.|+. .++..+..++...+ .+++|...|+++.+.+|.|......| ... ++
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~k 125 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL-EMA------AK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------Hh
Confidence 344444444 566754 46666766654333 36677888888888999986444433 333 35
Q ss_pred HHHHHHHHHHCCCCC
Q 038890 495 VKKTRNLMKERGIRK 509 (569)
Q Consensus 495 A~~~~~~m~~~g~~~ 509 (569)
|-++..++.+.+...
T Consensus 126 ap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 126 APELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHSSS--
T ss_pred hHHHHHHHHHHHhhh
Confidence 777777776665543
No 321
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.52 E-value=18 Score=31.42 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh-HHHHHHH--HHHHcCChhHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL-AWTAMIS--VFALNGYGKEAFDTFR 363 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~ 363 (569)
|-+..|..-|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.-.|++.-|.+-|.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33334444444443332 333567777777777788888888888877665432 2222222 2333567777766555
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH-HHHHHcCCHHHHHHHHHhCCC---
Q 038890 364 EMEAEG-VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI-DILSRAGLFSEAERLIRSMPM--- 438 (569)
Q Consensus 364 ~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~--- 438 (569)
..-+.. -.|-...|..+.. ..-++.+|..-+.+--+ ..|..-|...| ..|.-.=..+.+.+-...-..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 554432 1222223333322 23345555443332221 12333332222 222111111222111111100
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 439 ---EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 439 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+.-..||--+.+-+...|+.++|..+|+-++..+.
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 01124566667777777788888877777776553
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.41 E-value=0.71 Score=37.80 Aligned_cols=130 Identities=11% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.++..+.+.+.+. .....++.+...+..-+....+.++..|++.++.+...++++ . .+..-...++.
T Consensus 12 ~vi~~~~~~~~~~------~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~ 78 (143)
T PF00637_consen 12 EVISAFEERNQPE------ELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALR 78 (143)
T ss_dssp CCHHHCTTTT-GG------GCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHH
T ss_pred HHHHHHHhCCCHH------HHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHH
Confidence 4566677777777 888999999987655667788899999999988888877776 1 12233456778
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 038890 181 LFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRA 250 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 250 (569)
.|.+.|.++++.-++.++...+.. +..+...++++.|.+...+. .+...|..++..+...+..
T Consensus 79 ~c~~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHTTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHhcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 888888888888776654331100 00112233333333222222 3567788888887766543
No 323
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=21 Score=31.75 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=65.8
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHh--CCCCc--HhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhc
Q 038890 141 PFLLKECTKRLDGLVGASVYGQVVKF--GVCDD--VFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRS 216 (569)
Q Consensus 141 ~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (569)
......|...|.++.|-..++..-+. ++.|+ ...|..-+.+.-..++...|.+++ ...-+.+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~-----------gk~sr~lVrl 163 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY-----------GKCSRVLVRL 163 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH-----------HHhhhHhhhh
Confidence 33334455555555555444444331 22333 123333333333334444444432 2334455555
Q ss_pred CCHHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 217 GDLDVALDLFRRMKK--------RNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 217 g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
..+++|-..|.+-.. ++. ..|-..|-.+....++..|...++.-.+.+ ...-.-+..+...|+.+|- .|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip-~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP-AFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc-cccChHHHHHHHHHHHHhc-cC
Confidence 555555444443321 111 124445555666677777777777643211 1122334556666666553 45
Q ss_pred CHHHHHHHH
Q 038890 288 AIDHGKWVH 296 (569)
Q Consensus 288 ~~~~a~~~~ 296 (569)
+.+++..++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 555554443
No 324
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=33 Score=33.83 Aligned_cols=350 Identities=15% Similarity=0.090 Sum_probs=177.0
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhc-ChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCC
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECK-NMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS 80 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 80 (569)
++.+-|.|+.+.+.+. .....+-.+...++.++.... ....++.++...++..-...--+..+...|++...-. .+
T Consensus 66 AksHLekA~~i~~~ip-~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id--kD 142 (629)
T KOG2300|consen 66 AKSHLEKAWLISKSIP-SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID--KD 142 (629)
T ss_pred HHHHHHHHHHHHcccc-cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh--cc
Confidence 4667788888888772 222444455556666666555 7778888888887664222222345666777787777 89
Q ss_pred hhHHHHHhhcCCC-CCc--ccHHHHHHHHhc----CCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH--------HH
Q 038890 81 LSYATNVFSHIKR-SDL--YTYNIMIRANAC----KSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL--------LK 145 (569)
Q Consensus 81 ~~~A~~~~~~~~~-~~~--~~~~~li~~~~~----~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l--------l~ 145 (569)
+..|.+++.---. .+. ..|--++-.++. .-.+ +..+++++...-..|.+. +.+|..--..+ +.
T Consensus 143 ~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~ 220 (629)
T KOG2300|consen 143 FPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLS 220 (629)
T ss_pred chhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHH
Confidence 9999998654321 122 223222221111 1111 122333555555566554 45555431111 12
Q ss_pred HHHccCCcHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHH-----HHHHHHHHh
Q 038890 146 ECTKRLDGLVGASVYGQVVKF---GVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSW-----NAMIIGYLR 215 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----~~l~~~~~~ 215 (569)
-|...|+...++..++++.+. +..++ ..+.. ..+ | .--...|..+.+ -..-+| ..+..+|.+
T Consensus 221 yy~~~gq~rt~k~~lkQLQ~siqtist~~-~~h~e--~il---g--sps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 221 YYLLPGQVRTVKPALKQLQDSIQTISTSS-RGHDE--KIL---G--SPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHhcccchhhhHHHHHHHHHHHhccCCCC-CCccc--ccc---C--CCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 234457777777776666543 21111 00000 000 0 000112222222 011111 112222222
Q ss_pred --cCCHHHHHHHHHhcCCCC--hhHH--------HHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-------HHHH
Q 038890 216 --SGDLDVALDLFRRMKKRN--IFSW--------NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-------KITI 276 (569)
Q Consensus 216 --~g~~~~A~~~~~~~~~~~--~~~~--------~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-------~~~~ 276 (569)
.+-.|+|+...++.++.+ ...+ ..++-+-.-.|++.+|++-+..|.+.. . -.|. ....
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~--r~p~~~Llr~~~~~i 369 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC-T--RFPTPLLLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-H--hCCchHHHHHhHHHH
Confidence 123455555556665544 1111 222233345789999999888887432 1 1222 1112
Q ss_pred HHHH-HHHHccCCHHHHHHHHHHHHHhCCCCcchh--HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHH--------H
Q 038890 277 ASVL-SACAYLGAIDHGKWVHGYLRRSGLDCDVVI--GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTA--------M 345 (569)
Q Consensus 277 ~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l 345 (569)
..++ -.|...+.++.|+.-|....+.-...|... ...+.-.|.+.|+.+.-.++++.+..++..++.. .
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~ 449 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILY 449 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Confidence 2223 334567788888888777766433333322 2345667888888888888888887664333221 1
Q ss_pred HHH--HHHcCChhHHHHHHHHHHH
Q 038890 346 ISV--FALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 346 i~~--~~~~g~~~~A~~~~~~m~~ 367 (569)
+.+ ....+++.+|...+.+-.+
T Consensus 450 v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 450 VYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Confidence 111 2346777888877777654
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.99 E-value=45 Score=35.28 Aligned_cols=435 Identities=10% Similarity=-0.074 Sum_probs=199.3
Q ss_pred hhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-CCc-ccHHHHHHHHhcCCCCCC
Q 038890 37 ECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR-SDL-YTYNIMIRANACKSSETN 114 (569)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~ 114 (569)
..|+...+.++-..+... +..+ .+--..+..-... ...++...++++.+. |-. ..-...+..+.+.+++.
T Consensus 45 ~~g~~~~~~~~~~~l~d~--pL~~---yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~- 116 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDY--PLYP---YLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWR- 116 (644)
T ss_pred HCCCHHHHHHHHHhccCC--CcHh---HHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH-
Confidence 446777766666655322 1122 2222222221122 456666666666553 211 11222333344444444
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH----
Q 038890 115 DTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS---- 190 (569)
Q Consensus 115 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---- 190 (569)
..++.+ .. .+.+...-+....+....|+.++|......+-..|.. .+..++.++..+.+.|.+..
T Consensus 117 -----~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 117 -----GLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred -----HHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHH
Confidence 444321 11 1233344455666677777766665555555444422 44556666666665554333
Q ss_pred --------------HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH--HhCCChHHHH
Q 038890 191 --------------ARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF--VQGGRAREAL 254 (569)
Q Consensus 191 --------------A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~ 254 (569)
|..+...+..........++..+ .+...+...+.... ++...-..++.++ ....+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHH
Confidence 33332222111011111111111 12222222222221 1111111111111 1234456777
Q ss_pred HHHHHchhccccCCCCccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHh
Q 038890 255 ELFQEMQSSSVEEMVKPDKI--TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFK 332 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (569)
.++..... .....+... ....+.......+....+...+...... ..+......-+....+.++++.+...+.
T Consensus 262 ~~~~~~~~---~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 262 LMIPSLVR---AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77776542 222222221 2222322222222244454444443322 1234444555555567777777777777
Q ss_pred hCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHhHHhcCCCC
Q 038890 333 EMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG-RWCFVMMRHVYLVEP 408 (569)
Q Consensus 333 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~ 408 (569)
.|... ...-..-+..++...|+.++|...|+.+... .+|-.++.+ .+.|..-.- .......... +..
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~--~~~ 407 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPKPDSA--LTQ 407 (644)
T ss_pred hcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCchhhh--hcc
Confidence 77542 2233444566666678888888887776321 123222221 122211000 0000000000 000
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD---PLNHAFYVNLCDM 485 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~ 485 (569)
+ .-..-+..+...|+...|...+..+....+......+.......|..+.++.........+ -.-|..|...+..
T Consensus 408 ~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~ 485 (644)
T PRK11619 408 G--PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRR 485 (644)
T ss_pred C--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHH
Confidence 0 1122345566788888888888776223455566666666778888888887776544321 0123346666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
+.+.-.++.+.-+--...+.++.|+
T Consensus 486 ~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 486 YTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 6666667776654444467788776
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.55 E-value=27 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 341 AWTAMISVFALNGYG---KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 341 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
+...++.++...+.. ++|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 3344455555432111 1233334445555566677777777776643
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.23 E-value=2.2 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999988653
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.11 E-value=1.5 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++..++.++.+.|++++|.++|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999764
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.04 E-value=5.9 Score=33.70 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCccc--HHHHHHHH
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYT--YNIMIRAN 106 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~ 106 (569)
..++..+..+++++.|...+...+...-+... ..-+-.+|.+..... |.+++|+..++....++-.. ...-...+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-k~l~~lRLArvq~q~--~k~D~AL~~L~t~~~~~w~~~~~elrGDil 169 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL-KALAALRLARVQLQQ--KKADAALKTLDTIKEESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence 34556667789999999999988865322222 113445677777888 99999999999988664333 34444678
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHCC
Q 038890 107 ACKSSETNDTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~m~~~g 132 (569)
+..|+-. +|..-|++..+.+
T Consensus 170 l~kg~k~------~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQ------EARAAYEKALESD 189 (207)
T ss_pred HHcCchH------HHHHHHHHHHHcc
Confidence 8888888 9999999999875
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.85 E-value=3.3 Score=26.87 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..+.-++.+.|+++.|.+..+.+.+.+|+|..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 44666789999999999999999999999876543
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.67 E-value=19 Score=29.77 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=39.3
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVY-HYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMH 455 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 455 (569)
...++.+.+..++..+.-- .|... .-..-...+++.|++.+|+.+|+++ ...|....-..|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4566777777777777632 34332 2223344466778888888888887 3344444444555554443
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.57 E-value=6.8 Score=28.94 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+..-|++.+..+.+++|.+.+|+..|.++++-++..-..+...|..++
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 333466788888899999999999999999999887754433444555444
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.90 E-value=7.4 Score=29.10 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+.+-|++.+..+.+.+|.+.+|+..|.++++-++..-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 333467789999999999999999999999999988875544333666554
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.81 E-value=16 Score=29.77 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHHHHHHH---HHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038890 374 HVTFVGLLSA---CAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGAL 448 (569)
Q Consensus 374 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 448 (569)
....+.|+.. -...++.+.+..+++.+.-- .|+. ..-..-...+...|++++|+.+|++. ...+....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3344444443 34588999999999988843 3443 22233445577899999999999999 333343333334
Q ss_pred HHHHHh-cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 449 LGGCQM-HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 449 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
...|.. .||. .|...+......|.-.++..+.+.+.
T Consensus 84 ~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 443332 3332 24444444445555566666666665
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.46 E-value=2.2 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 358899999999999999999998654
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.92 E-value=4.4 Score=37.50 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
..-|.+.|.+++|++.|..... +.| +.+++..-..+|.+...+..|..-........ ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 4568899999999999998776 456 88888888899999999988877666665321 122344555555555566
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 038890 425 LFSEAERLIRSM-PMEPDV 442 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~~p~~ 442 (569)
...+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666666655 667764
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=64 Score=34.00 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=72.0
Q ss_pred HHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCC
Q 038890 32 RNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSS 111 (569)
Q Consensus 32 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 111 (569)
+..+.+.+.+++|+.+-+.....-....+ ..+...++..+.-. |++++|-...-.|...+...|..-+.-++..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i--~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVI--KKVGKTYIDHLLFE--GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccch--HHHHHHHHHHHHhc--chHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 45667778888887776655543221112 25777788888777 999999999888888888888888888887777
Q ss_pred CCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038890 112 ETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149 (569)
Q Consensus 112 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 149 (569)
.. .++.-+.......++..|..++..+..
T Consensus 439 l~---------~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---------DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---------hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 66 344444443223456678888877665
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.17 E-value=29 Score=29.78 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=46.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWG-----ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
...+...|++++|+.-++..--.|....+. .|.+.....|.++.|...++...+..-. +.....-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCc
Confidence 344556666666666666441122222222 2233455566666666666554433222 2234455666666666
Q ss_pred hHHHHHHHHHHHHCC
Q 038890 492 FDDVKKTRNLMKERG 506 (569)
Q Consensus 492 ~~~A~~~~~~m~~~g 506 (569)
-++|+.-|++....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666554
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.07 E-value=62 Score=33.63 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=70.1
Q ss_pred cCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc----C-CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 352 NGYGKEAFDTFREMEA-------EGVRPNHVTFVGLLSACAHS----G-LVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+.+.|+.+|+...+ .|. ......+..+|.+. . +.+.|..++....+ .| .|+.......+..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHH
Confidence 3455555555555544 331 22333344444432 2 55666666666663 32 2443333222222
Q ss_pred HHH-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 420 LSR-AGLFSEAERLIRSMPMEPDVFVWGALLGGCQ----MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 420 ~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
... ..+...|.++|......-....+..+...+. ...+...|..+++++.+.++............+.. ++++.
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~ 415 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDT 415 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccH
Confidence 222 2345677777766621112222222222221 22366777777777777663322222222223333 66666
Q ss_pred HHHHHHHHHHCCCC
Q 038890 495 VKKTRNLMKERGIR 508 (569)
Q Consensus 495 A~~~~~~m~~~g~~ 508 (569)
+.-.+..+.+.|.+
T Consensus 416 ~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 416 ALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHhhhh
Confidence 66666666665554
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.79 E-value=77 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCC
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKR 93 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 93 (569)
.-|..|+-.|... |..++|+++|.....
T Consensus 505 ~~y~~Li~LY~~k--g~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATK--GMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 4578888888888 999999999888764
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.50 E-value=3.3 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
..+...+...|+++.|...++..++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444555555555544444433
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.22 E-value=57 Score=32.55 Aligned_cols=176 Identities=8% Similarity=0.028 Sum_probs=92.0
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
.|.....+++..+....++.-++.+..+|.. .+-..|..++.+|... ..+.-..+|+++.+..+. |...-..|..-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3444445566666666666666666655543 3445566666666666 445566666666654322 22222333333
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC------HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH------VYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 453 (569)
|.+ ++.+.+..+|.++..+. -|. ...|.-+.... ..+.+....+..++ +...-...+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 333 66666666666655322 121 12333333221 23455555555444 32233344455555666
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
...++.+|++++..+.+.+..+..+...++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 67777777777777777666665555555554443
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.18 E-value=9.4 Score=32.84 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF---GVCDDVFVQNSVISLFMACGFVTSA 191 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 191 (569)
.|++.|-.+...+.--++.....|.. +....|.+++..++...++. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555443323222222222 22345555555555555543 1234555555566665555555554
No 344
>PRK10941 hypothetical protein; Provisional
Probab=81.99 E-value=10 Score=34.78 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..+.+-.+|.+.++++.|.++.+.+....|+++.-+.--+-.|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 455666778899999999999999999999999888888999999999999999888876643
No 345
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=4.7 Score=35.45 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV-WGALLGGCQMHGNVEL 460 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~ 460 (569)
|.....++.|...+.+... +.|++ ..|+.-+.++.+..+++.+..-.++. .+.||..- -..+..++.....++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5555667777776666553 24655 44566677777777777776655555 66666553 3334445566777888
Q ss_pred HHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 461 GEKVAQYLIDLD-----PLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 461 a~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|+..+.++.++. +.-..+...|..+--+.=...+..++.+..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888775422 222344454544433333344444444443
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.78 E-value=6.4 Score=33.09 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHH
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR-----------FDDVKKTRNLMKE 504 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 504 (569)
+++|+.-|++++.++|....++..++.+|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888999999999999999887653 5555556665554
No 347
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.71 E-value=11 Score=33.28 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHhhcC--CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 444 VWGALLGGCQMHGNVEL-------GEKVAQYLIDLD--PL----NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+..+...|...|+.+. |.+.|.++.+.+ |. .......++....+.|++++|.++|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45555666777777544 444444444432 22 245666788889999999999999999876553
No 348
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=81.25 E-value=1.9 Score=33.59 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=32.7
Q ss_pred ceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcccccccc
Q 038890 513 GCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSMEA 566 (569)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 566 (569)
+++|+.. +.|++++.+||.. ++..++...||.|+...+.++.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc
Confidence 5677544 7999999999988 4446777888999888877754
No 349
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.19 E-value=41 Score=30.25 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+.+.|.+.|.+..|..-++++ ..-| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445566666666666666666 1111 123445556667777777777665555444445543
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.06 E-value=65 Score=32.88 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHH
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREA 253 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 253 (569)
..+.++..+.+.|..++|+++- +|.. .-.....+.|+.+.|.++..+.. +..-|..|.++..+.|++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----~D~d---~rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----TDPD---QRFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----CChh---hhhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhH
Confidence 3445555556666666665541 1111 11223345666666666554432 445677777777777777777
Q ss_pred HHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 254 LELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 254 ~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
.+.|.... -|..|+-.+...|+.+....+-....+.|. . |....+|...|+++++.+++..
T Consensus 686 ~EC~~~a~-------------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 686 SECFLRAR-------------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhc-------------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 77776654 234455555666666655555555555442 2 2223345566777777776654
Q ss_pred C
Q 038890 334 M 334 (569)
Q Consensus 334 ~ 334 (569)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=12 Score=34.34 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG---VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+-..++..-....+++.++..+-++.... ..|+. +-...++.|. .-+.++++.++..-. .+|+-||..+++.+|
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 34444444445567777777776665421 11211 2222333333 335667777777766 677777878888888
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038890 418 DILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~ 436 (569)
+.+.+.+++.+|.++...|
T Consensus 143 D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 8888888777777776665
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.44 E-value=9.6 Score=34.67 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
+++.....|...|.+.+|.++.+++...+|-+...+-.|...+...|+--.|.+-++++. +.|+..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 345556678999999999999999999999999999999999999999888888777773 4466554
No 353
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.11 E-value=58 Score=31.30 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=48.1
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPKK-------DTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
....++..+...+.+.|.++.|...+..+... .+.....-+..+...|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556778888899999999999988887652 345555566777788999999999888776
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.87 E-value=22 Score=30.70 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=47.2
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCcchhHHHHHHHHHhc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS---GLDCDVVIGTALVDMYGKC 321 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 321 (569)
.+.|+ +.|.+.|-.+. ..+.--++.....+...|. ..+.+++..++....+. +-.+|+.++.+|+..|-+.
T Consensus 118 sr~~d-~~A~~~fL~~E----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLE----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hccCc-HHHHHHHHHHc----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 34443 55666666665 4444445555555544444 56677777777766652 2256677777777777777
Q ss_pred CChHHHH
Q 038890 322 GCVERAY 328 (569)
Q Consensus 322 g~~~~A~ 328 (569)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 7777664
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.53 E-value=9 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYA 487 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~ 487 (569)
.+.-+..+.+.+..++|+...++- +-+| |..+-..++..++-.|++++|..-++-+-+..|... ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir--- 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR--- 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH---
Confidence 344566777888999998887766 5566 555667788889999999999999998888887743 33444442
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 488 KAGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
++..-+..-.-+..|..++
T Consensus 81 -------~ea~R~evfag~~~Pgflg 99 (273)
T COG4455 81 -------CEAARNEVFAGGAVPGFLG 99 (273)
T ss_pred -------HHHHHHHHhccCCCCCCcC
Confidence 3333444445555555433
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.39 E-value=7.6 Score=28.64 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..++...+.+|.+......++..+...|++++|++.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34455556667777777777777777777777777666665543
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.63 E-value=1.2e+02 Score=33.73 Aligned_cols=268 Identities=12% Similarity=-0.030 Sum_probs=151.2
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhhcCC
Q 038890 122 LKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV-TSARMLFDEMSN 200 (569)
Q Consensus 122 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 200 (569)
...+-.+++ .+|+..-...+..+...+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..
T Consensus 623 ~~~L~~~L~---D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~ 695 (897)
T PRK13800 623 VAELAPYLA---DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS 695 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC
Confidence 344444443 367777777777777776544 4444445443 23444444555555444321 112222233334
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
+|..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+.. .... ..++...-....
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l-------~D~~~~VR~~aa 763 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA-------TDENREVRIAVA 763 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh-------cCCCHHHHHHHH
Confidence 66666566666665543211 23445566677776666677777766554322 2222 245666666667
Q ss_pred HHHHccCCHHH-HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHH-HHHhhCCCCChhHHHHHHHHHHHcCChhHH
Q 038890 281 SACAYLGAIDH-GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY-GVFKEMPKKDTLAWTAMISVFALNGYGKEA 358 (569)
Q Consensus 281 ~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (569)
.++...+..+. +...+..+.+ .++..+-...+.++.+.|..+.+. .+...+..++...-...+.++...+. +++
T Consensus 764 ~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 764 KGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cch
Confidence 77766665432 2344444433 456778888888888888766553 34455556676666667777777765 456
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 359 FDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 359 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
...+..+.+ .|+...-...+.++.+.+....+...+..+.+ .+|...-.....+
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~a 893 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRA 893 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 666666664 45666667777777776444566667766664 3454444333333
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.50 E-value=27 Score=26.09 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 212 GYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.+...|++++|..+.+...-||...|-.|.. -+.|..+++..-+..|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4455566666666666665566655555443 24455555555555553
No 359
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.08 E-value=57 Score=29.51 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=113.6
Q ss_pred hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH---hCC--CCcchhHHHHHHHHHh
Q 038890 246 QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR---SGL--DCDVVIGTALVDMYGK 320 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~ 320 (569)
+...+++|+.-|.+++... ...-.........++....+.+++++....|.++.. ..+ .-+....|++++.-..
T Consensus 39 ~e~~p~~Al~sF~kVlelE-gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE-GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4457888888888887421 111122334556678888999999999888887764 111 2234556777777666
Q ss_pred cCChHHHHHHHhhCCC-----CChhH----HHHHHHHHHHcCChhHHHHHHHHHHHCCC----CCC-------HHHHHHH
Q 038890 321 CGCVERAYGVFKEMPK-----KDTLA----WTAMISVFALNGYGKEAFDTFREMEAEGV----RPN-------HVTFVGL 380 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~-----~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~-------~~~~~~l 380 (569)
..+.+--.++|+.-.+ .+... -..+...|...|++.+...+++++...-- .-| ...|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666666654321 12222 23466667777777777788877754311 111 1346666
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH----HHHHcCCHHHHHHHH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID----ILSRAGLFSEAERLI 433 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~ 433 (569)
|..|....+-..-..+++........-|.+.....+-. ...+.|++++|..-|
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 77777777777777888877654444566655443322 234678888876433
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.41 E-value=34 Score=31.12 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=54.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.=|.++...|+|.+++...-+-... ...++|.. ....|-.|.+.+.+..+.++-......--.-+..-|..+++.|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~--pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQV--PEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC--cccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 3467888888888887766554411 23344443 4444455778888888777776666533233334466666665
Q ss_pred Hh-----cCChHHHHHHH
Q 038890 319 GK-----CGCVERAYGVF 331 (569)
Q Consensus 319 ~~-----~g~~~~A~~~~ 331 (569)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 53 47777777765
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.32 E-value=15 Score=31.94 Aligned_cols=78 Identities=13% Similarity=-0.032 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCCHhHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY-LVEPHVYHYACMIDI 419 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~ 419 (569)
+.+.-++.+.+.+...+++...++-.+.+ +-|..+-..++..++-.|++++|..-++-.-.-. ...+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888899999999888777653 2245566677888899999999987776655211 112334566666654
No 362
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.54 E-value=2.1 Score=39.66 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.|.++.|++.|... ...| ....|..-..++.+.+....|++=+..+.+++|++..-|-.-..+..-.|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 44555555555544 3333 223333334445555566666666666666666655555555555555566666666666
Q ss_pred HHHHCCCCCC
Q 038890 501 LMKERGIRKE 510 (569)
Q Consensus 501 ~m~~~g~~~~ 510 (569)
...+.++.+.
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 6665555543
No 363
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.29 E-value=34 Score=27.17 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=35.2
Q ss_pred HHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 460 LGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 460 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.+.++|+.|.. ++...+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888888876 5567788899999999999999999999875
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.91 E-value=7.3 Score=21.50 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888888888777643
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.72 E-value=91 Score=30.25 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ChhHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPL-NHAFYVNLCDMYA-KAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 504 (569)
.+..+.+.|-+..|.++.+-+..++|. ||......++.|+ ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345577888999999999999999988 8877777777665 66777777777776544
No 366
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.50 E-value=54 Score=29.29 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=64.2
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 418 DILSRAGLFSEAERLIRSM---------PMEPDVF-----------VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
+-+.+.|++.+|..-|+++ +-+|-.. .+..+..++...|++-++++....+....|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666655554 2233222 2334445566788999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|..-+.+.+..=+.++|..-|..+.+..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99999888888888889998888887644
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.30 E-value=8.7 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
No 368
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.26 E-value=81 Score=29.50 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 412 HYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
.+.....-|++.|+-+.|.+.+++
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444445555555555554443
No 369
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=71.85 E-value=4.3 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHhCCcccCcccc
Q 038890 534 VVKEELVLILNGLSKIMKNGGFGQYIRGL 562 (569)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 562 (569)
+...++++.+++-.++++..|++||+-.+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 35678899999999999999999998654
No 370
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.05 E-value=9.1 Score=37.45 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEPDVFVWGALL-GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.+.++.|..++.++ ..+||-..|...- .++.+.+++..|..=+.++++.+|.....|..-+.++.+.+++.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34444444444444 3344333222221 334444455555555555555554444444444444444445555544444
Q ss_pred H
Q 038890 501 L 501 (569)
Q Consensus 501 ~ 501 (569)
.
T Consensus 97 ~ 97 (476)
T KOG0376|consen 97 K 97 (476)
T ss_pred H
Confidence 4
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.80 E-value=37 Score=24.70 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHH
Q 038890 157 ASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (569)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +.+..|..++.++-..|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 22222322222224456666666666665 5555555566655555554433
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.57 E-value=1e+02 Score=30.21 Aligned_cols=53 Identities=6% Similarity=-0.131 Sum_probs=31.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHV--TFVGLLSACA--HSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 402 (569)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34567777777777777765 444443 3344444443 34566677777776653
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.06 E-value=14 Score=33.82 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGS 531 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (569)
..+.|+.++|..+|+.+..+.|.++.++..++......+++-+|-.++-+... + + |+.+- +++...+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--i--s-P~nse--------ALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--I--S-PGNSE--------ALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--e--C-CCchH--------HHhhhhc
Confidence 34678888888888888888888888888887777777777777777655433 2 1 33332 3444455
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 038890 532 PKVVKEELVLILNGLSKIMK 551 (569)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~ 551 (569)
..|..+.+.+..-+......
T Consensus 193 T~plV~~iD~r~l~svdskr 212 (472)
T KOG3824|consen 193 TTPLVSAIDRRMLRSVDSKR 212 (472)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 55666666655555444433
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.00 E-value=35 Score=31.10 Aligned_cols=83 Identities=11% Similarity=-0.050 Sum_probs=52.6
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHh----
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLR---- 215 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~---- 215 (569)
|.+++..+++.++....-+--+.--+....+...-|-.|.+.|.+..+.++-..... .+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 577888888888776654444432233445566667788999998888887665543 233446665555443
Q ss_pred -cCCHHHHHHHH
Q 038890 216 -SGDLDVALDLF 226 (569)
Q Consensus 216 -~g~~~~A~~~~ 226 (569)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56666666655
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.22 E-value=46 Score=24.97 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
.++|.-+-+.+...+.. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45665555555544311 22222222345667788888888888888888888866644 3567777777777777766
Q ss_pred CCCCCHHHHHH
Q 038890 369 GVRPNHVTFVG 379 (569)
Q Consensus 369 ~~~p~~~~~~~ 379 (569)
| .|....|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 444444443
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.07 E-value=1.1e+02 Score=31.08 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM-PMEP--DVFVWGALLGGCQ-MHGNVELGEKVAQYL 468 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 468 (569)
+.+.|.+..|.++.+-+ .+.| |+.....+|..|+ +..+++--+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555554444 3333 2333333444432 344445444444444
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.04 E-value=1.1e+02 Score=29.18 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH---cCChHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK---AGRFDDVKKTRNL 501 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 501 (569)
+.-+.+++++ ...| +...+..++..+.+..+.+...+.++++....|.++..|..++..... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666665 3344 566778888888999999999999999999999999999988877655 2357777777666
Q ss_pred HHHC-CCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCccc
Q 038890 502 MKER-GIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQ 557 (569)
Q Consensus 502 m~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (569)
.... ..... . . .............++.++-++..-+.+.||.+
T Consensus 128 ~l~~L~~~~~---------~-~---~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 128 CLRALSRRRS---------G-R---MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHhhc---------c-c---cccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 5332 11111 0 0 01111122346677888888888899999854
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=69.03 E-value=73 Score=27.25 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=83.8
Q ss_pred CCCCCCcccHHHHHHHHHcc----CCcHHHHHHHHHHHHhCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 038890 131 TGISPDCLTFPFLLKECTKR----LDGLVGASVYGQVVKFGVCDDVF----VQNSVISLFMACGFVTSARMLFDEMSNRD 202 (569)
Q Consensus 131 ~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 202 (569)
.|..++...++.++..+.+. +..+.+..+=.+....++..+-. ....=+..|-+.||+...-.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 35566777777776665443 33444444444444444443322 12222334555666655544433221
Q ss_pred hhHHHHHHHHHHhcCCHHH-----HHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHH
Q 038890 203 VVSWNAMIIGYLRSGDLDV-----ALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA 277 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~ 277 (569)
.++-+.++++. |+.+.++.++...+.|-....+-++.-+.+++.+.+-- ..--
T Consensus 79 --------~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG--------------RiGi 136 (233)
T PF14669_consen 79 --------MGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG--------------RIGI 136 (233)
T ss_pred --------hhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh--------------HHHH
Confidence 11111222221 22333333333334454555554444444443332211 1223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCC--------------CcchhHHHHHHHHHhcCChHHHHHHHh
Q 038890 278 SVLSACAYLGAIDHGKWVHGYLRRSGLD--------------CDVVIGTALVDMYGKCGCVERAYGVFK 332 (569)
Q Consensus 278 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (569)
+++-.|.+.-+|.++.++++.+.+..+. +--.+.|...+.+.+.|..|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4455667777788888887777654321 222344555555666666666666655
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.95 E-value=35 Score=26.79 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 428 EAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 428 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+++.-+-.+.+-|++.....-+.+|.+.+|+..|.++|+-++..-++....|-.++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44444444577899999999999999999999999999998876555444555444
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.66 E-value=64 Score=30.11 Aligned_cols=20 Identities=5% Similarity=0.192 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhcCCCChhHH
Q 038890 460 LGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~ 479 (569)
.|.+.+.++.+.+|.-|...
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 46667777777777655443
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.19 E-value=42 Score=24.41 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHH
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (569)
.+++..+.+.|+ .+......+-.+-...|+.+.|..++..+. ..+..|..++.++...|+..-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 455666666652 233333333322235578888888888888 77788888888888877765553
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.17 E-value=36 Score=25.23 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=26.1
Q ss_pred HhcCCHHHHHHHHHHHhhcC----CCC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLD----PLN-----HAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+.||+..|.+.+.+..+.. ... ..+...++......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666655444444311 111 12234455556666666666666666543
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.73 E-value=40 Score=31.56 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=58.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 416 MIDILSRAGLFSEAERLIRSM----PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
=.+-|.+..++..|...|.+. --.| +...|+.-..+-.-.|++..++.=..+++..+|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 344466677777777777665 1122 3456666666666677888888888888888888777777777777777
Q ss_pred CChHHHHHHHHHH
Q 038890 490 GRFDDVKKTRNLM 502 (569)
Q Consensus 490 g~~~~A~~~~~~m 502 (569)
.++++|..+.+..
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 7766666655543
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.86 E-value=1.5e+02 Score=29.69 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF-GVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
+-..+|+....+ ..-|...|...+..|.+.+.+.+...+|..|+.. +..|+..++.+. .-|-..-+++.|..+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 455666666554 3347888888888888888888888999988875 334555554332 2333444488888888766
Q ss_pred CC
Q 038890 199 SN 200 (569)
Q Consensus 199 ~~ 200 (569)
..
T Consensus 167 LR 168 (568)
T KOG2396|consen 167 LR 168 (568)
T ss_pred hh
Confidence 54
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.71 E-value=48 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 357 EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 357 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+..+-++.+....+.|+.......+++|.+.+|+..|..+|+-++.+.| +....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 4556666677777889999999999999999999999999999886654 3333455544
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.64 E-value=46 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 426 FSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 426 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
.+.|.++.+-|| ...............|++..|.++.+.++..+|+|..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356777777774 233344455567789999999999999999999999998888888877664
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.33 E-value=1.7e+02 Score=29.98 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=73.9
Q ss_pred CCChhHHHHHhhcCC------------CCCcccHHHHH---HHHhcCCCCCC-CCChhHHHHHHHHHHHCCCCCC-----
Q 038890 78 SGSLSYATNVFSHIK------------RSDLYTYNIMI---RANACKSSETN-DTHSGKCLKLYKQMLCTGISPD----- 136 (569)
Q Consensus 78 ~g~~~~A~~~~~~~~------------~~~~~~~~~li---~~~~~~~~~~~-~~~~~~A~~~~~~m~~~g~~p~----- 136 (569)
+..+++|.+.|.-.. ..++.+-++|+ ..+-.+|+.+. +..+++++-.|+....-.+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 367788888876543 13445555555 45667777762 2223445555555554333322
Q ss_pred --------cccHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH-hcCCHHHHHHHHhhcC
Q 038890 137 --------CLTFPFL---LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFM-ACGFVTSARMLFDEMS 199 (569)
Q Consensus 137 --------~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 199 (569)
...|.++ +..+.+.|.+..|.++.+.+.+..+.-|+...-.+|+.|+ ++.++.-.+++++...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2223333 3345678889999998888888776656777677777665 4566766666666553
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.21 E-value=1.5e+02 Score=28.91 Aligned_cols=87 Identities=9% Similarity=0.144 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C------------
Q 038890 172 VFVQNSVISLFMACGFVTSARMLFDEMSN------RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK-R------------ 232 (569)
Q Consensus 172 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------------ 232 (569)
...+.-+..-|..+|+++.|++.|-+.+. ..+..|..+|..-.-.|+|........+..+ |
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34677788889999999999999998765 2344566777777778888777777666543 1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHc
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEM 260 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 260 (569)
-...+..+..... +++..|.+.|-..
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 1223334443333 3666666666554
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.87 E-value=59 Score=26.06 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=46.3
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 407 EPHVYHYACMIDILSRAGLFS---EAERLIRSM-P-MEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.++..+--.+..++.+..+.+ +-+.++++. + -.|+ .....-|.-++.+.++++.+.++.+.+.+.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344455555666666655443 344455555 2 2332 2344556667889999999999999999999988654
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.68 E-value=25 Score=25.01 Aligned_cols=45 Identities=4% Similarity=-0.026 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
...+.++|+..++.+.+..++.+ .++-.|+.+|...|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888887665443 3445566778888888887775
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.46 E-value=31 Score=29.84 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 437 PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 437 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
...|+..+|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777888888888888888777777
No 392
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.36 E-value=1e+02 Score=27.62 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLF 426 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 426 (569)
|.....++.|+..|.+.+. +.|+.. -|..-+.++.+..+++.+.+--....+ +.|+. .....+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 3444578889998777666 567774 456667788888888888766666553 34554 3344556667777888
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 427 SEAERLIRSM-------PMEPDVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 427 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
++|+..+.+. +..|-...+..|..+-...=...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888887776 4445555666666664444444555554444
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.39 E-value=1.2e+02 Score=27.18 Aligned_cols=103 Identities=7% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHh
Q 038890 140 FPFLLKECT--KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR--DVVSWNAMIIGYLR 215 (569)
Q Consensus 140 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 215 (569)
|..++.++. ..++++.|.+.+..- .+.| ....-++.++...|+.+.|..+++....+ +......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 555555543 446777777666221 1111 22234777777789999999988876652 33333333333 66
Q ss_pred cCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHhCC
Q 038890 216 SGDLDVALDLFRRMKKRN-IFSWNSIITGFVQGG 248 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g 248 (569)
.+.+.+|...-+...+.. ...+..++..+....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 788888888877776532 345666666655433
No 394
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.34 E-value=1.3e+02 Score=27.70 Aligned_cols=24 Identities=4% Similarity=-0.169 Sum_probs=11.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
.+..+...|++.++.+.+.++..+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444455555555555444433
No 395
>PRK10941 hypothetical protein; Provisional
Probab=62.20 E-value=49 Score=30.42 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
+.+-.+|.+.++++.|+.+.+.+ .+.| ++.-+.--.-.|.+.|.+..|..=++..++.-|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 44556677788888888887777 4445 34445555566778888888888888888877776644
No 396
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.66 E-value=1.2e+02 Score=27.09 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=43.6
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhcC
Q 038890 142 FLLKECTKRLDGLVGASVYGQVVKFGVCD-DVFVQNSVISLFMACGFVTSARMLFDEMSNRD-VVSWNAMIIGYLRSG 217 (569)
Q Consensus 142 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g 217 (569)
-++.++...|+.+.|..+++.. ++.+ +......++.+ ..+|.+.+|..+-+...++. ...+..++..+....
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4667777778888888877654 2222 22333333434 66788888888877766532 345666666665433
No 397
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.49 E-value=2.1e+02 Score=29.82 Aligned_cols=278 Identities=12% Similarity=0.013 Sum_probs=144.0
Q ss_pred HHHHHHHHHhcCCC-ChhHHHHHHHH-----HHhCCChHHHHHHHHHchh---ccccCCCCccHHHHHHHHHHHHccC--
Q 038890 219 LDVALDLFRRMKKR-NIFSWNSIITG-----FVQGGRAREALELFQEMQS---SSVEEMVKPDKITIASVLSACAYLG-- 287 (569)
Q Consensus 219 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~---~~~~~~~~p~~~~~~~ll~~~~~~~-- 287 (569)
...|.+.++...+. ++..-..+... +....+.+.|+.+|+...+ .....+ ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766543 33332222222 3455678888888888752 000122 2234455555665532
Q ss_pred ---CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh-cCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChhHH
Q 038890 288 ---AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK-CGCVERAYGVFKEMPKK-DTLAWTAMISVFAL----NGYGKEA 358 (569)
Q Consensus 288 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A 358 (569)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...... ....+..+..+|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888877 3443333222222222 24567888888877654 33333333333322 3467888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH-HHH---HHH----cCCHHHHH
Q 038890 359 FDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM-IDI---LSR----AGLFSEAE 430 (569)
Q Consensus 359 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~---~~~----~g~~~~A~ 430 (569)
..++.+..+.| .|....-...+..+.. +.++.+...+..+. ..|.. ...+-... +.. ... ..+.+.+.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-Hhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence 88888888877 3333222223333333 56665555554444 22211 11111111 110 000 12445555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHH
Q 038890 431 RLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA---GRFDDVKKTRNLMK 503 (569)
Q Consensus 431 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~ 503 (569)
..+......-+......+...|.. ..+++.|...+.++.... ......++.++..- ..+..|.++++...
T Consensus 460 ~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 460 SLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 555555333344444555554433 235777777777777666 45555666555432 12677888888776
Q ss_pred HCCC
Q 038890 504 ERGI 507 (569)
Q Consensus 504 ~~g~ 507 (569)
+.+-
T Consensus 537 ~~~~ 540 (552)
T KOG1550|consen 537 EEDS 540 (552)
T ss_pred hcCc
Confidence 6443
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.38 E-value=41 Score=34.10 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=34.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
|...+.+.|..-.|-.++.+. .+ ...+.++..+..++....+++.|++.|+.+.++.|.++..-+.|.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 344444444545555444433 11 122334455555555556666666666666666666555554443
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.62 E-value=38 Score=29.29 Aligned_cols=51 Identities=14% Similarity=-0.042 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 386 HSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
...+.+......+...+.....|++.+|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334433333333333332233577777777777777777777777777666
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.48 E-value=24 Score=25.05 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=21.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~ 395 (569)
...+.++|+..|+..++.-..|.. .++..++.+++..|++.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555543222221 244555555555555555443
No 401
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.57 E-value=1.3e+02 Score=26.83 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD 316 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (569)
...-+..|.+.-++.-|-...++.. .| ..+-.+++ -|.+..+.+--.++.+-....+++-+.....+++
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIi--------EP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii- 201 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKII--------EP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII- 201 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhh--------hh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh-
Confidence 3344556666666655555555443 12 11222222 2444444444445555555556665555555554
Q ss_pred HHHhcCChHHHHHHHhhCC----------------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 317 MYGKCGCVERAYGVFKEMP----------------KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
+...|+...|+..++.-. +|.+.....++..+ ..+++++|.+++.++.+.|..|..
T Consensus 202 -fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 -FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred -hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 455677777766655432 34444444444443 346677777777777777766643
No 402
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.65 E-value=91 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=32.6
Q ss_pred HHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 460 LGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 460 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
...++|..|.+ ++......|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667887776 445667788889999999999999999886
No 403
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.35 E-value=2.1e+02 Score=28.61 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=69.3
Q ss_pred HHHhcCChHHHHHHHhhCCC---C---------ChhHHHHHHHHHHHcCChhHHHHHHHHHHH-------CCCCCCH---
Q 038890 317 MYGKCGCVERAYGVFKEMPK---K---------DTLAWTAMISVFALNGYGKEAFDTFREMEA-------EGVRPNH--- 374 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~--- 374 (569)
.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456888888888765431 1 123457777777777777777777766553 4555432
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 375 --------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 375 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
.+|+.-+ .+...|++-.|.+.|.+....+ ..++..|..|..+|+.
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 2344333 4678899999999999988766 5778889999888863
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.20 E-value=77 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+.......|++++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444456677777777777777663
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.98 E-value=3.2e+02 Score=30.58 Aligned_cols=256 Identities=14% Similarity=0.022 Sum_probs=122.4
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc
Q 038890 192 RMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP 271 (569)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p 271 (569)
..+...+..+|..+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..++ . .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L----~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHL----G---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHh----c---CC
Confidence 3444445567777766677777776665544444444545555444444444444322111122333333 2 24
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFAL 351 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 351 (569)
|...-...+.++...+..+ ...+.. +.+ .++..+-...+.++.+.+..+. +......++...-...+.++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHH
Confidence 5555555555554332111 111211 221 3444555555555555444322 2333445555555556666666
Q ss_pred cCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 352 NGYGKE-AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 352 ~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
.+..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+.. ++.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~ 840 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAV 840 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chH
Confidence 554332 3344444443 24555556666666666665444333333332 34555555566666666543 344
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 431 RLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 431 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
..+-.+-..|+...-...+.++.+.+....+...+..+.+
T Consensus 841 ~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4444332245555555555555554333445555554444
No 406
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=1.6e+02 Score=27.02 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=67.4
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhH-------HHHHHHHHHhcCCHHHHHHHHhhcC-------C-CChhHHH
Q 038890 143 LLKECTKRLDGLVGASVYGQVVKFGVCDDVFV-------QNSVISLFMACGFVTSARMLFDEMS-------N-RDVVSWN 207 (569)
Q Consensus 143 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~ 207 (569)
+.+...+.++.++|...+.+.+..|+..+..+ ...+...|...|+...-.+.....+ + +.+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667778888888888887776655433 3356667777777655544433322 2 2333444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 208 AMIIGYLR-SGDLDVALDLFRRMKK----RN-----IFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 208 ~l~~~~~~-~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
+++..+-. ...++.-+.+.....+ .. ...-..++..+.+.|.+.+|+.+...+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45544433 2344555554444332 11 1122356778888888888887665543
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.14 E-value=18 Score=28.69 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKEC 147 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 147 (569)
.|..+|++|+++|-+|| .|+.|+..+
T Consensus 113 DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred cHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 89999999999998887 577777654
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.17 E-value=1e+02 Score=23.66 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=13.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRR 301 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 301 (569)
|..++.-|...|.+++|.+++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44445555555555555555555444
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.76 E-value=1e+02 Score=23.55 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 288 AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
..++|..+.+.+...+. -...+--+-+..+.+.|+|++|+..=.....||...|.++- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 46777777777766553 22222223334456777777775544445556666665543 3466777777777776665
Q ss_pred CC
Q 038890 368 EG 369 (569)
Q Consensus 368 ~~ 369 (569)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.51 E-value=3.6e+02 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
-|..|+..|...|..++|++++.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 36777788888888888888888775
No 411
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.22 E-value=3.2e+02 Score=29.10 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=14.7
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.-.+|+.+|.+..+.|.++.|+..
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCcee
Confidence 345566666666666666666643
No 412
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.21 E-value=59 Score=33.04 Aligned_cols=135 Identities=12% Similarity=-0.032 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHH
Q 038890 370 VRPNHVTFVGLLSACAHS--GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD--VFV 444 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~ 444 (569)
--|+..+...++.-.... ...+-+-.++-.|. +...|--.+.|...-.+.-.|+...|...+... ...|- ...
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 346677666655444332 22344445555554 222343333344444455679999999988877 44552 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...|.......|-.-.|..++.+...+....|-++..++.+|.-..+++.|++-|+...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55667777778888889999999998887788899999999999999999999998876553
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.77 E-value=40 Score=22.72 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
-...++.+|...|++++|.++++.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567778888888888888777643
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.62 E-value=27 Score=30.75 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+.+|.+.+.+++.++.++-|.....|..++..-.+.|+++.|.+-+++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344555555555555555555555555555555555555555555555443
No 415
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=51.05 E-value=2.3e+02 Score=27.05 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKE-AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
-.+.+.+++.++-+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 3455666777766666666665555455555555555544443333 33444444433 7888888888888877666
Q ss_pred HHHHHHHHHhH
Q 038890 391 EKGRWCFVMMR 401 (569)
Q Consensus 391 ~~a~~~~~~~~ 401 (569)
......+..+.
T Consensus 247 ~~~~~~i~~~L 257 (340)
T PF12069_consen 247 DLVAILIDALL 257 (340)
T ss_pred hHHHHHHHHHh
Confidence 66555455555
No 416
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.77 E-value=2.7e+02 Score=27.91 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=35.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
..-.+...|++-.|.+.|.+.......+|..|..|+.+|.-.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344567889999999999999999888999999999988754
No 417
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.80 E-value=43 Score=30.96 Aligned_cols=78 Identities=8% Similarity=0.090 Sum_probs=57.1
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGA-LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+..|+..|...+.-..+.|.+.+.-.+|.+. ...| |+..|-. ...-+...++++.+..+|.+..+.+|.+|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3567777777777777777788888888777 4444 4555533 22336678999999999999999999999887654
Q ss_pred H
Q 038890 483 C 483 (569)
Q Consensus 483 ~ 483 (569)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 4
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.77 E-value=1.2e+02 Score=24.68 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=58.7
Q ss_pred cHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCC---C--CCCcccHHHHHHHHHccCC-cHHHHHHHHHHHHhCCCCc
Q 038890 98 TYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTG---I--SPDCLTFPFLLKECTKRLD-GLVGASVYGQVVKFGVCDD 171 (569)
Q Consensus 98 ~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g---~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~ 171 (569)
..|.++.-....++.. ..+.+++.+..-. + ..+..+|.+++++.+...- --.+..+|+.+.+.+.+++
T Consensus 41 fiN~iL~hl~~~~nf~------~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t 114 (145)
T PF13762_consen 41 FINCILNHLASYQNFS------GVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFT 114 (145)
T ss_pred HHHHHHHHHHHccchH------HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCC
Confidence 3466666666666776 7777777664311 0 2466789999999866655 4567788899988888899
Q ss_pred HhHHHHHHHHHHhc
Q 038890 172 VFVQNSVISLFMAC 185 (569)
Q Consensus 172 ~~~~~~l~~~~~~~ 185 (569)
+.-|..++.++.+.
T Consensus 115 ~~dy~~li~~~l~g 128 (145)
T PF13762_consen 115 PSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987654
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.77 E-value=2.7e+02 Score=27.62 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHh---CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 154 LVGASVYGQVVKF---GV-CDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 154 ~~a~~~~~~~~~~---g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
+....++...... |+ ..+......++... .|+...+..+++..... ...=..+....++...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~------------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG------------VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc------------cCCCCHHHHHHHHhhh
Confidence 4555555554432 33 44455555454432 67887777776654210 0000222233333322
Q ss_pred C---CCChhHHHHHHHHHHh---CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 230 K---KRNIFSWNSIITGFVQ---GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 230 ~---~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
. ..+...+..+++++.+ .++.+.|+.++..|. ..|..|....-..+..++-..
T Consensus 220 ~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l----~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 220 AARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARML----EAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred hhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHhh
Confidence 1 1222344555665555 478899999999998 666677765555555554433
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.91 E-value=1.2e+02 Score=23.27 Aligned_cols=27 Identities=7% Similarity=0.452 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 421
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=48.30 E-value=2.4e+02 Score=26.50 Aligned_cols=128 Identities=11% Similarity=0.165 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHhHHhcCCCC--CHhHHHHHHHHHHHcCCHH
Q 038890 356 KEAFDTFREMEAEGVRPNHVTFVGLLSACAH--SG----LVEKGRWCFVMMRHVYLVEP--HVYHYACMIDILSRAGLFS 427 (569)
Q Consensus 356 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 427 (569)
+..+.+++.|.+.|+.-+..+|.+....... .. ...++..+++.|++.+.+-. +-..+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566778888888888777666553332222 22 34577888888887765432 22333333322 333333
Q ss_pred ----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHhcCC--HHHHHHHHHHHhhcCCC-ChhHHHHHHHH
Q 038890 428 ----EAERLIRSM---PMEP-DV-FVWGALLGGCQMHGN--VELGEKVAQYLIDLDPL-NHAFYVNLCDM 485 (569)
Q Consensus 428 ----~A~~~~~~~---~~~p-~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~ 485 (569)
.++.+|+.+ +... |. .....++..+..... ..++.++++.+.+.+.. ....|..++-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 334444444 4433 22 233333333222111 34677777777776532 33334544433
No 422
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.26 E-value=1.3e+02 Score=23.53 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-------hhcCCCChhHH----HHHHHHHHHcCChHHHHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYL-------IDLDPLNHAFY----VNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.++..|..++...|++++++...+.. -+++.+....| .+-+.++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34445555666777776655444443 33555544444 34456778889999999988765
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.70 E-value=1.2e+02 Score=25.95 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 038890 153 GLVGASVYGQVVKFGVCDDV-------FVQNSVISLFMACGFVTSARMLFDEMSN 200 (569)
Q Consensus 153 ~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 200 (569)
++.|+.+|+.+.+.-..|.. .+--..+-+|.+.|.+++|.+++++.-.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45666666666554322210 0111233456666666666666666544
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.65 E-value=65 Score=20.30 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=26.6
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 147 CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 147 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
..+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4466777788889999988888888888776664
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.99 E-value=2.4e+02 Score=26.18 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
++.....|..+|.+.+|.++.++. ...| +...+..|+..+...||--.+..-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444556677777777777777776 4444 55566677777777777666666665554
No 426
>PRK09857 putative transposase; Provisional
Probab=46.32 E-value=1.6e+02 Score=27.57 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
..++.-....++.++..++++.+.+..|.......++++-+.+.|.-+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444567777777777777776666666677888888888988889999999999998754
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.31 E-value=39 Score=31.73 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF-VWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~ 462 (569)
...|.++.|++.|...+... ++....|..-..++.+.+++..|+.-+... .+.||.. -|-.-..+-...|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 45688899999988887543 566677777778888888988888877766 6666653 3433344556789999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
..++.+.+++-+. .+-..|-...-..+..++-...+++.++.
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 9999998877441 22233334445556666666655555443
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.03 E-value=2.6e+02 Score=26.20 Aligned_cols=84 Identities=10% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh----------cCCHHHHHHHHH
Q 038890 158 SVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLR----------SGDLDVALDLFR 227 (569)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~ 227 (569)
++|+.+...++.|.-..+.=+.-.+.+.=.+.+...+++.+...... |..++..||. .||+....++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 45555555566655555443334444555556666666655442111 3334443333 677777777777
Q ss_pred hcCCCChhHHHHHHH
Q 038890 228 RMKKRNIFSWNSIIT 242 (569)
Q Consensus 228 ~~~~~~~~~~~~l~~ 242 (569)
.-+.-|+...-.+..
T Consensus 343 ~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 343 NYPTTDISKMLAVAD 357 (370)
T ss_pred cCCCCCHHHHHHHHH
Confidence 766655554433333
No 429
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=31 Score=36.72 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 420 LSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
....|+.+.|++..++.+ +..+|..|.....++|+.+-|+..|++.+.
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345666666666666543 555666777766677777777666666554
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.59 E-value=1.1e+02 Score=30.02 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPK-----------KDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
...|++.++-.||+..|+++++.+.- -.+.++..+.-+|...+++.+|+++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999887752 145577788888999999999999998764
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.04 E-value=44 Score=29.52 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=26.1
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 422 RAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
+.++.+.|.+++.+. ...| ...+|..+...-.+.|+++.|.+.+++..+++|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 344455555555444 3223 3344555555555555555555555555555444
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.01 E-value=1.3e+02 Score=29.47 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 206 WNAMIIGYLRSGDLDVALDLFRRMK-----------KRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
...|++.++-.||+..|+++++.+. .-.+.+|..+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777776654 1244567778888888899999998888875
No 433
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.88 E-value=81 Score=22.89 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038890 186 GFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGD 218 (569)
Q Consensus 186 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (569)
.+.+.+.++++.++.+...+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334445555555544444445444444444443
No 434
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.58 E-value=1.7e+02 Score=23.85 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCC---------CCCcccHHHHHHHHhcCCC-CCCCCChhHHHHHHHHHHHCCC
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIK---------RSDLYTYNIMIRANACKSS-ETNDTHSGKCLKLYKQMLCTGI 133 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~~~~~~~A~~~~~~m~~~g~ 133 (569)
-..+.++.-.+.. ++...-.++++.+. ..+-..|+.++.+.+.... -. .+..+|..|.+.+.
T Consensus 40 ~fiN~iL~hl~~~--~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~------~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 40 IFINCILNHLASY--QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL------TSLTLFNFLKKNDI 111 (145)
T ss_pred HHHHHHHHHHHHc--cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH------HHHHHHHHHHHcCC
Confidence 3455666665666 67777777776664 2466889999999866555 33 68889999998888
Q ss_pred CCCcccHHHHHHHHHccCC
Q 038890 134 SPDCLTFPFLLKECTKRLD 152 (569)
Q Consensus 134 ~p~~~~~~~ll~~~~~~~~ 152 (569)
++++.-|..+|.++.+...
T Consensus 112 ~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 112 EFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred CCCHHHHHHHHHHHHcCCC
Confidence 9999999999999877533
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.40 E-value=47 Score=30.74 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGL 380 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 380 (569)
.-|+..|....+.||+++|+.++++.++.|..--..+|...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34668889999999999999999999998876555555443
No 436
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.89 E-value=2.2e+02 Score=24.79 Aligned_cols=61 Identities=10% Similarity=-0.028 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
....+.++..+...|+++.|.+.|.-+.... ..|.. .|..-+..+.+.+.-....+.++.+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 4567788888999999999999999888653 33443 2333334444444333333333333
No 437
>PRK12798 chemotaxis protein; Reviewed
Probab=43.55 E-value=3.3e+02 Score=26.79 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=74.3
Q ss_pred cCChHHHHHHHhhCCCC----ChhHHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHH
Q 038890 321 CGCVERAYGVFKEMPKK----DTLAWTAMISVFA-LNGYGKEAFDTFREMEAEGVRPNHV----TFVGLLSACAHSGLVE 391 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~ 391 (569)
.|+.+++.+.+..+... ....+-.|+.+-. ...+...|+.+|+...- .-|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46666666666666542 2334555554433 34566677777766543 223221 2222233445666766
Q ss_pred HHHHHHHHhHHhcCCCCCHh-HHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVY-HYACMIDILSRAG---LFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
++..+-.....++.-.|-.. .+..+...+.+.+ ..+.-..++..|.-.--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66655554444442223221 1222222333322 2334444444442122234666666666677777777766666
Q ss_pred HhhcC
Q 038890 468 LIDLD 472 (569)
Q Consensus 468 ~~~~~ 472 (569)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 66644
No 438
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.75 E-value=3.5e+02 Score=26.84 Aligned_cols=234 Identities=14% Similarity=0.053 Sum_probs=121.2
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVAL 223 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (569)
|.++...| ..+...+-....... +...+.....++....+......+.+.+..++..+......++...++.+-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~--~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEAD--EPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCC--ChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 44555555 455665555554332 22333333333333333333555556565666667777778887777777666
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 038890 224 DLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 303 (569)
.+..-+...+...-...+.++...+. + +...+.... . .+|...-..-+.++...+..+..- .+..+..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L----~---d~d~~Vra~A~raLG~l~~~~a~~-~L~~al~-- 188 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAAL----T---HEDALVRAAALRALGELPRRLSES-TLRLYLR-- 188 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHh----c---CCCHHHHHHHHHHHHhhccccchH-HHHHHHc--
Confidence 66666666666555555555554432 1 233333333 1 456666666666666666543322 2223322
Q ss_pred CCCcchhHHHHHHHHHhcCChHHHHHHHhh-CCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 304 LDCDVVIGTALVDMYGKCGCVERAYGVFKE-MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
..+..+-..-+.+....|. +.|...+.. ...++......+...+...| .+++...+..+.+. ..+-...+.
T Consensus 189 -d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d-----~~vr~~a~~ 260 (410)
T TIGR02270 189 -DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA-----AATRREALR 260 (410)
T ss_pred -CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC-----hhhHHHHHH
Confidence 3555666666666666666 555555444 34444444333333333333 23556655555542 124445556
Q ss_pred HHHccCCHHHHHHHHHHhH
Q 038890 383 ACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~ 401 (569)
++...|+...+..+.+.+.
T Consensus 261 AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHcCCcchHHHHHHHhc
Confidence 6666666665555544443
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.13 E-value=43 Score=30.96 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
|+..|....+.||+++|+.+++++.+++-.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555533
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.03 E-value=3.1e+02 Score=25.93 Aligned_cols=110 Identities=14% Similarity=-0.080 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhHHhcCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLV---EPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56677788877743221 345566667777777888866655565555445677778888899888889999899999
Q ss_pred HHhhcC-CCChhHHHHHHHHHHHcCCh--HHHHHHHH
Q 038890 467 YLIDLD-PLNHAFYVNLCDMYAKAGRF--DDVKKTRN 500 (569)
Q Consensus 467 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 500 (569)
.+...+ ..+... ..++..+...+.. +.+..++.
T Consensus 226 ~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 988843 223333 3333344434433 55555544
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.71 E-value=1.7e+02 Score=23.99 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 038890 122 LKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF 187 (569)
Q Consensus 122 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 187 (569)
.++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|.=..+..+...|-
T Consensus 6 ~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34555666677665543 335566677777778899999999998877665443345667777764
No 442
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.34 E-value=3.7e+02 Score=26.70 Aligned_cols=233 Identities=12% Similarity=-0.028 Sum_probs=131.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHH
Q 038890 179 ISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
++++...| ..+...+-.... ++...+.....++....+......+.+.+..++..+-.....++.+.+...-...+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 56666666 345554444432 44444444444444344444456666777777777788888888888776655544
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 336 (569)
...+. .++.......+.++...+. + +...+..+.+ .++..+...-+.++...+..+..-.+..-...
T Consensus 123 ~~~L~--------~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d 189 (410)
T TIGR02270 123 EPLLA--------ASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRD 189 (410)
T ss_pred HHHhc--------CCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcC
Confidence 44442 3455555566666665442 1 2233333333 45666667777777777765544444444555
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
.|...-..-+.+....|. ..|...+...... ++......+....... ..+++...+..+.+. +. +-...
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d----~~--vr~~a 258 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA----AA--TRREA 258 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcC----hh--hHHHH
Confidence 677777777788888888 6666666653322 2222222222222222 333666666666532 22 45567
Q ss_pred HHHHHHcCCHHHHHHHHHhCC
Q 038890 417 IDILSRAGLFSEAERLIRSMP 437 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~ 437 (569)
+.++.+.|+...+.-+.+.|.
T Consensus 259 ~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHcCCcchHHHHHHHhc
Confidence 777778888776666666664
No 443
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.00 E-value=1.4e+02 Score=21.89 Aligned_cols=53 Identities=23% Similarity=0.115 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChH
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMYAKAGRFD 493 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 493 (569)
|...-..+...+...|++++|.+.+-.+++.++. +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666777777777777777777777776544 4556666777776666643
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.93 E-value=3e+02 Score=25.54 Aligned_cols=148 Identities=12% Similarity=-0.102 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC-----
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG----- 424 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 424 (569)
+...|..+|..+.+.|..+ ....|...+.. ..+..+|..+++...+ .|..+.......+...|....
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcc
Confidence 4556666666555544321 11122222222 2366677777776663 332221222333444443321
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC--------
Q 038890 425 --LFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG-------- 490 (569)
Q Consensus 425 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 490 (569)
+...|...+.++-..-+......+...|.. ..+.++|...|.++.+.+. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223677777766111244444444444322 3477888888888888776 44555555 555555
Q ss_pred -------ChHHHHHHHHHHHHCCCC
Q 038890 491 -------RFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 491 -------~~~~A~~~~~~m~~~g~~ 508 (569)
+...|...+......|..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 777788888887777754
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.19 E-value=95 Score=19.56 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
..+.|-..++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777777766666554
No 446
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=40.17 E-value=1.2e+02 Score=27.67 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+-..+.+.++++.|....++....+|.++.-+.--+.+|.+.|.+.-|.+-+....+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3344578889999999999999999999988888888899999999999888877555
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.73 E-value=94 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhc
Q 038890 42 RELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSH 90 (569)
Q Consensus 42 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 90 (569)
+++..+|..+...|+-.... ..|..-+..+... |++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A--~fY~~wA~~le~~--~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLA--LFYEEWAEFLEKR--GNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBH--HHHHHHHHHHHHT--T-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHc--CCHHHHHHHHHh
Confidence 36777888888777655542 6677777777777 888888877753
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.66 E-value=1.4e+02 Score=25.17 Aligned_cols=51 Identities=8% Similarity=-0.153 Sum_probs=28.1
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLD 152 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 152 (569)
...-..++..+...++.. .|.++++.+.+.+..++..|.-..|..+...|-
T Consensus 25 T~qR~~IL~~l~~~~~hl------Sa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAI------SAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CHHHHHHHHHHHhcCCCC------CHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333344555555555555 677777777666655555555555555554443
No 449
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.57 E-value=1.8e+02 Score=22.30 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=38.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 150 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|.+|- -.+.|--+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3456677777777766553 12223223334455667777773332333335665554443 33556666666666655
Q ss_pred CC
Q 038890 230 KK 231 (569)
Q Consensus 230 ~~ 231 (569)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 43
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.53 E-value=3.9e+02 Score=26.18 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHhC
Q 038890 424 GLFSEAERLIRSM 436 (569)
Q Consensus 424 g~~~~A~~~~~~~ 436 (569)
+++..++++++++
T Consensus 318 sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 318 SKYASCLELLREI 330 (466)
T ss_pred hhHHHHHHHHHHh
Confidence 4566666666666
No 451
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.50 E-value=2.1e+02 Score=27.30 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=36.8
Q ss_pred HcCC-HHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 422 RAGL-FSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 422 ~~g~-~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
..|. .+++..++.++ ..-|+. ..|.+++......|.++..+.+|++++..+..
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 3444 45777777766 333443 46777778888888888888888888887644
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.34 E-value=1.8e+02 Score=26.46 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.+..-|...|+++.|.++|+.+.... .....+...+..++.+.|+.++...+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444666666666666666664321 11223445555666666666666655433
No 453
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.30 E-value=87 Score=18.30 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=7.3
Q ss_pred HHHHHHHcCChHHHHHH
Q 038890 482 LCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 482 l~~~~~~~g~~~~A~~~ 498 (569)
++-.+...|++++|..+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444444444444444
No 454
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.40 E-value=3.8e+02 Score=25.47 Aligned_cols=115 Identities=12% Similarity=0.051 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH---cCCHHHHHH
Q 038890 355 GKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR---AGLFSEAER 431 (569)
Q Consensus 355 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 431 (569)
.+.-+.++++.++.+ +-+......++..+.+..+.+...+.|+++...+ +-+...|...++.... .-.++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 356677888877763 2355667777888888888888888999988654 3467777777776544 224556555
Q ss_pred HHHhC---------CC------CCC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 432 LIRSM---------PM------EPD--VF---VWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 432 ~~~~~---------~~------~p~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
+|.+. +. .++ .. ++..+...+...|-.+.|..+++-+.+.+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55544 11 111 11 22333333568999999999999999966
No 455
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.64 E-value=1.8e+02 Score=25.47 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhcCCC--ChhHHHHHH
Q 038890 425 LFSEAERLIRSMPM----------EPDVFVWGALLGGCQMHG---------NVELGEKVAQYLIDLDPL--NHAFYVNLC 483 (569)
Q Consensus 425 ~~~~A~~~~~~~~~----------~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 483 (569)
..+.|+.++++|+. .....-|..+..+|.+.| +.+...++++.+++.+.+ =|..|..++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 45677777777721 123456677777777766 556666777777765533 345677777
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 038890 484 DMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~ 503 (569)
+--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 65555567788887777654
No 456
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.58 E-value=1.7e+02 Score=23.99 Aligned_cols=47 Identities=13% Similarity=-0.018 Sum_probs=25.5
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 149 (569)
..-..++..+...+++. .|.++|+.+.+.+...+..|.-..+..+..
T Consensus 21 ~qR~~vl~~L~~~~~~~------sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 21 PQRLAVLELLLEADGHL------SAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHHHHHhcCCCC------CHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 33445555566665656 777777777766544444444344444433
No 457
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.22 E-value=1.2e+02 Score=29.86 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 432 LIRSMPMEPDV--FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 432 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+|...++.|.. .++..-+..+.+.+++..|..+.+++++++|...
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 34444666654 3667778888999999999999999999988643
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.13 E-value=1.4e+02 Score=25.45 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHhcCCCCCH-hH-----HHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHV-YH-----YACMIDILSRAGLFSEAERLIRSMPMEPDVFV 444 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 444 (569)
.+.|+.+|+.+.+....+-+. .. -...+-.|.+.|.+++|.+++++.--.|+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~ 145 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQK 145 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchh
Confidence 455666666666544311010 11 11233446666666666666666622444433
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.13 E-value=5.2e+02 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356677888888888888887775
No 460
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.61 E-value=87 Score=17.84 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHH
Q 038890 118 SGKCLKLYKQMLCTGISPDCLTFPFLL 144 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p~~~~~~~ll 144 (569)
.+.|..+|++.+. +.|+..+|....
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 3488888888887 458877776543
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.17 E-value=4.5e+02 Score=25.57 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=63.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH-HHHHhcC-CHHHHHHHHHhcC---CCChhHHHH---HH
Q 038890 170 DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMI-IGYLRSG-DLDVALDLFRRMK---KRNIFSWNS---II 241 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~---l~ 241 (569)
-.+.++-.+..++...|+...|.+++++..- ++.... ..+.... +.... -.++. ..|-..|-+ .|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~~~~g---~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSNLTSG---NCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccccC---ccccCCccccchHHHHHHHHHH
Confidence 3566777777888888888888888775421 110000 0000000 00000 00000 013333333 35
Q ss_pred HHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 038890 242 TGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA-YLGAIDHGKWVHGYLRR 301 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 301 (569)
..+.+.|-+..|+++.+-+.. -...-|+.....+|..|+ +.++++-..++.+....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls----Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS----LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh----cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 567788888888888888773 222336666666666663 55666666666665443
No 462
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.07 E-value=3.9e+02 Score=24.85 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=65.1
Q ss_pred hHHHHHHHhhCCC-----CChhHHHHHHHHHHH-cC-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 324 VERAYGVFKEMPK-----KDTLAWTAMISVFAL-NG-YGKEAFDTFREME-AEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 324 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
+.+|+.+|+.... .|..+...++..... .+ ....-.++.+-+. ..|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663221 244444555554444 11 1111222222222 22345666677777777777778877777
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+++......+...|...|..+|......|+..-...+.++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 77776643334456677777777777777777777776654
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.02 E-value=6.6e+02 Score=27.60 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=86.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
....+|+++.|++.-.++. +..+|..|+......|+.+-|+..|++.+. |..|--.|.-.|+.++-.+.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3556788888888766654 456789999999999999999888887654 33444456667888877666
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.+.... +.|..+ ....-.-.|+.++=..++...+..|-.. .....+|.-++|.++.++...
T Consensus 721 ~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~lay------lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLAY------LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHH------HHHhhcCcHHHHHHHHHhhcc
Confidence 655542 223222 1122224688888888998886544322 122457778888888888776
No 464
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.71 E-value=3.4e+02 Score=24.27 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=34.8
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 169 (569)
...|...+.++...|.-. .|. .+..++-.+...|+++.|+++.+.+++.|..
T Consensus 64 LP~Y~p~V~g~L~~g~~~---------------------qd~-Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 64 LPKYLPWVEGVLAAGAGY---------------------QDD-VLMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CcchHHHHHHHHHcCCCC---------------------CCC-eeeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 355777777777666543 332 2344444566788899999998888888854
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.61 E-value=1.9e+02 Score=30.17 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAE--GVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
+++.+|...|++..+.++++..... |-+.-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555555555555555555432 1111223455555555555543
No 466
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.42 E-value=5.1e+02 Score=26.00 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=77.6
Q ss_pred hcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCCC
Q 038890 38 CKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSETN 114 (569)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 114 (569)
.|++..|.+.....++. .+.+| .........+... |.++.+...+..... ....+-..+++..-.-|++.
T Consensus 302 ~gd~~aas~~~~~~lr~-~~~~p---~~i~l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~- 374 (831)
T PRK15180 302 DGDIIAASQQLFAALRN-QQQDP---VLIQLRSVIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR- 374 (831)
T ss_pred ccCHHHHHHHHHHHHHh-CCCCc---hhhHHHHHHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH-
Confidence 37777765444444443 23444 3444555666777 999999988876653 45566677777777778888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038890 115 DTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 115 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 169 (569)
.|..+-+-|....++ ++.............|-++++.-.|+++...+.+
T Consensus 375 -----~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 -----EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred -----HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999998888876654 2222222223344567788888888888776544
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.24 E-value=5e+02 Score=25.82 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=50.8
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC---CCCChhHHHHHH
Q 038890 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM---PKKDTLAWTAMI 346 (569)
Q Consensus 270 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 346 (569)
..+......++..+ .|+...+..+++.+...+...+.. ...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 34445555554433 677777777777665432111111 111122111 112222344455
Q ss_pred HHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 347 SVFAL---NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 347 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
+++.+ .++.+.|+.++..|.+.|..|....-..+..+
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55544 47888899999999988877765544444433
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.19 E-value=1.9e+02 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=9.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 038890 416 MIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444
No 469
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.03 E-value=1.6e+02 Score=30.72 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCCCceeEEEE
Q 038890 487 AKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEV 519 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 519 (569)
.+.|++.+|.+.+-.+...++- |...|..+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~---Pk~f~~~L 535 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIA---PKSFWPLL 535 (566)
T ss_dssp ---------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCC---cHHHHHHH
Confidence 3458888998888887776665 44455433
No 470
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=3.8e+02 Score=24.09 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=14.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
+...-...+++.+|+.+|+++.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455677778888887776
No 471
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.63 E-value=5.1e+02 Score=25.49 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=57.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG---DLDVALDLFRRMK---KRNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 244 (569)
+......++. ...||...|+..++.+.. ..+.+ ..+...+++.+-. .++-..+..+++++
T Consensus 191 ~~~a~~~l~~--~s~GD~R~aLN~LE~~~~------------~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 191 DEEALDYLVR--LSNGDARRALNLLELAAL------------SAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred CHHHHHHHHH--hcCchHHHHHHHHHHHHH------------hcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 3334444433 236888888777664422 11111 1233333333322 24555666778877
Q ss_pred HhC---CChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 245 VQG---GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 245 ~~~---g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
.|. .+.+.|+-++-+|. ..|-.|....-..++-++-.-|
T Consensus 257 hKSvRGSD~dAALyylARmi----~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 257 HKSVRGSDPDAALYYLARMI----EAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHhhccCCcCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHhhcc
Confidence 654 68899999999998 6666677666666666555444
No 472
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.20 E-value=5.3e+02 Score=25.47 Aligned_cols=193 Identities=14% Similarity=0.025 Sum_probs=92.5
Q ss_pred HHHHHHchhccccCCCCccHHH--HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcch--hHHHHHHHHHhcCChHHHHH
Q 038890 254 LELFQEMQSSSVEEMVKPDKIT--IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVV--IGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 254 ~~~~~~m~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 329 (569)
.++++.+. ..|..|+... ....+..++..|+.+-+. .+.+.|..|+.. .....+...+..|+.+.+..
T Consensus 15 ~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 15 LDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 66777777 5566665432 223344455667765443 344455444322 11233455667788888877
Q ss_pred HHhhCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 330 VFKEMPKK----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV---TFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 330 ~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
+++.-... +....+ .+...+..|+. ++++.+.+.|..|+.. ..+. +...+..|+.+-+..+++.
T Consensus 87 Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll~~--- 157 (413)
T PHA02875 87 LLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLIDH--- 157 (413)
T ss_pred HHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc---
Confidence 77654321 111122 23333455665 3444555666665542 2223 3334456777655554433
Q ss_pred hcCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 038890 403 VYLVEPH---VYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFV---WGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 403 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
|..++ ....+.|. ..+..|+.+-+.-+++. |..|+... ...++......|+.+-+.-+++.
T Consensus 158 --g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 158 --KACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred --CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 22222 22223333 34456776655444443 33333211 12344434566666655544443
No 473
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.75 E-value=7.5e+02 Score=27.14 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=118.7
Q ss_pred HHhcCCHHHHHHHHHhcC----CCCh-------hHHHHHH-HHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 213 YLRSGDLDVALDLFRRMK----KRNI-------FSWNSII-TGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
.....++.+|..++.+.. .++. ..++.+- ......|++++|.++.+.....-......+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445788888888887654 2222 1344443 244567889999888888753221233344556667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCcchhHH---HH--HHHHHhcCC--hHHHHHHHhhCCC-----CCh-----hHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT---AL--VDMYGKCGC--VERAYGVFKEMPK-----KDT-----LAWT 343 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~-----~~~-----~~~~ 343 (569)
.+..-.|++++|..+..+..+..-..+...+. .+ ...+...|+ +.+....|..+.. ... .++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77788899999988888776643233333222 22 233455563 2222223332221 122 2333
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhH--HH
Q 038890 344 AMISVFALN-GYGKEAFDTFREMEAEGVRPNHVTF--VGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----HVYH--YA 414 (569)
Q Consensus 344 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~--~~ 414 (569)
.+..++.+. +...++..-+.-.......|-...+ ..|+.+....|+.++|...+.++..-.. .+ +..+ +.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~-~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL-NGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCCCchHHHHHHH
Confidence 344444431 2222222222222222222222222 3667778889999999998888874322 22 1111 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 038890 415 CMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
.-.......|+.+.+.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 2222345678888888877764
No 474
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.68 E-value=3.6e+02 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=14.4
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 038890 486 YAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~ 504 (569)
..+.|+++.|.++++-|..
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3466888999888888754
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.61 E-value=5.3e+02 Score=25.31 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=35.8
Q ss_pred HHHHhCCChHHHHHHHHHchhccccCCCCccHH--HHHHHHHHHHc--cCCHHHHHHHHHHHHHh
Q 038890 242 TGFVQGGRAREALELFQEMQSSSVEEMVKPDKI--TIASVLSACAY--LGAIDHGKWVHGYLRRS 302 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 302 (569)
..+.+.+++..|.++|..+. .. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~----~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELL----RR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHH----Hh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34557888888888888887 33 444443 44555555543 44677777777776654
No 476
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.37 E-value=1.2e+02 Score=30.22 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=49.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHcCC
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTF-VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRAGL 425 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 425 (569)
.+...++++.|+.++.+.++ +.|+...| ..-..++.+.+++..|+.=+..+.+.. |+ ...|-.-..++.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhHHH
Confidence 34455666677777766666 34544333 222355666666666665555555321 22 2223233333444445
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEPDVFVWGALLGGC 452 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 452 (569)
+.+|...|+.. .+.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 55555555544 4555555444444443
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.28 E-value=1.2e+02 Score=23.41 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG 153 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 153 (569)
.++..+...+... .|.++++.+.+.+..++..|.-..+..+...|-.
T Consensus 5 ~Il~~l~~~~~~~------sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHL------TAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCC------CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3455555566666 8888888888877666666666666666665543
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.68 E-value=1.8e+02 Score=30.31 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHhhcCCCCChhHHHHHhhcCCC------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH
Q 038890 67 TRLLFFCALSVSGSLSYATNVFSHIKR------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140 (569)
Q Consensus 67 ~~l~~~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 140 (569)
..|+.+|... |++..+.++++.... .-...||..|+.++++|+++--.-.+.|-+.+++.. +.-|..||
T Consensus 32 ~sl~eacv~n--~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~ 106 (1117)
T COG5108 32 ASLFEACVYN--GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTY 106 (1117)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHH
Confidence 3667777777 777777777776552 124567777777777776652222223333444333 33466677
Q ss_pred HHHHHHH
Q 038890 141 PFLLKEC 147 (569)
Q Consensus 141 ~~ll~~~ 147 (569)
..++.+.
T Consensus 107 all~~~s 113 (1117)
T COG5108 107 ALLCQAS 113 (1117)
T ss_pred HHHHHhh
Confidence 6666544
No 479
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.54 E-value=1.5e+02 Score=21.23 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=5.6
Q ss_pred HHHHHHHCCCCCC
Q 038890 124 LYKQMLCTGISPD 136 (569)
Q Consensus 124 ~~~~m~~~g~~p~ 136 (569)
+++.+.+.|..++
T Consensus 41 ~~~~Ll~~g~~~~ 53 (89)
T PF12796_consen 41 IVKLLLENGADIN 53 (89)
T ss_dssp HHHHHHHTTTCTT
T ss_pred HHHHHHHhccccc
Confidence 4444444444443
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.32 E-value=7.1e+02 Score=26.41 Aligned_cols=85 Identities=9% Similarity=0.050 Sum_probs=33.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---cC
Q 038890 315 VDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAH---SG 388 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~---~~ 388 (569)
...+.-.|+++.|.+++-.... .+.+.+-..+.. .|-.......-..+.... -.|...-+..||..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~---~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAY---YGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHH---TT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHH---cCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3445667888888888877221 233333222222 221111111112222110 01111445666666653 56
Q ss_pred CHHHHHHHHHHhHH
Q 038890 389 LVEKGRWCFVMMRH 402 (569)
Q Consensus 389 ~~~~a~~~~~~~~~ 402 (569)
+...|.++|--+..
T Consensus 342 d~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 342 DPREALQYLYLICL 355 (613)
T ss_dssp -HHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 77888888777763
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.18 E-value=1.9e+02 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
++.++++...+....+.....|.-.|++.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444444444444445555566666666666666654
No 482
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=29.18 E-value=6.1e+02 Score=28.11 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCCcccH--HHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 124 LYKQMLCTGISPDCLTF--PFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFV--QNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 124 ~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
+++.+.+.|..||.... .+.+...+..|..+-+. .+++.|..++... -++-+...+..|+.+-+.-+++.-.
T Consensus 540 ~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~----~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~ 615 (823)
T PLN03192 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVL----VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS 615 (823)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHH----HHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc
Confidence 45555566666654432 23344444555544332 3344444433211 1122233334565555554443222
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 200 NRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
..+...-...+...+..|+.+-+..+++.-.
T Consensus 616 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga 646 (823)
T PLN03192 616 ISDPHAAGDLLCTAAKRNDLTAMKELLKQGL 646 (823)
T ss_pred ccCcccCchHHHHHHHhCCHHHHHHHHHCCC
Confidence 2222222233444555666666655555433
No 483
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.96 E-value=2.2e+02 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=12.3
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 187 FVTSARMLFDEMSNRDVVSWNAMIIGY 213 (569)
Q Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~l~~~~ 213 (569)
..+.+.++++.+..+...+|..+..++
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 344444444444444444444444444
No 484
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.73 E-value=6.3e+02 Score=25.63 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC
Q 038890 24 KESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR 93 (569)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 93 (569)
++.....++.-..+.+.+.+...+|.+++..++.... -.......-|... -+++.|+.+|..-.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---LWI~aA~wefe~n--~ni~saRalflrgLR 168 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---LWIYAAKWEFEIN--LNIESARALFLRGLR 168 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---hHHhhhhhHHhhc--cchHHHHHHHHHHhh
Confidence 3444555666555666788899999999988754444 2233333444444 458999999988664
No 485
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.96 E-value=5e+02 Score=23.82 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH-HHHHHHHH
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF-YVNLCDMY 486 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~ 486 (569)
-++.....+...|.+.|++.+|...|-..+ .|+...+..++.-....|. |..... ....+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHH
Confidence 356777888888899998888887765432 2233332223332222222 332222 33444567
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 038890 487 AKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (569)
.-.|+...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 7789999999988877654
No 486
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.95 E-value=4.7e+02 Score=27.39 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
...|.-+|....+.+.|.++++++.+.+|.++-.-.....+....|.-++|+......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344444555555566666666655555555554444555555555555555554444
No 487
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.88 E-value=3.5e+02 Score=22.10 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHCCCCCCcccHHHHHHHHHcc-CCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 038890 127 QMLCTGISPDCLTFPFLLKECTKR-LDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV 188 (569)
Q Consensus 127 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 188 (569)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.++..+..|.=..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445566544432 2344444443 45778888999888887666655444456667777654
No 488
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.68 E-value=5.4e+02 Score=24.20 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH----------hCCChHHHHHHHHHchhccccCCCC
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFV----------QGGRAREALELFQEMQSSSVEEMVK 270 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a~~~~~~m~~~~~~~~~~ 270 (569)
|.-.++.-+.-.+.+.=.+.+++.+++.+..... -|..|+..|+ -.|++....++++.-- .
T Consensus 276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp--------~ 346 (370)
T KOG4567|consen 276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYP--------T 346 (370)
T ss_pred ccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCC--------C
Confidence 5556666666667778888888888888764221 1444444443 3588888888876653 4
Q ss_pred ccHHHHHHHHHHHHc
Q 038890 271 PDKITIASVLSACAY 285 (569)
Q Consensus 271 p~~~~~~~ll~~~~~ 285 (569)
.|..+.-.+...+..
T Consensus 347 tdi~~~l~~A~~Lr~ 361 (370)
T KOG4567|consen 347 TDISKMLAVADSLRD 361 (370)
T ss_pred CCHHHHHHHHHHHHh
Confidence 566666666655543
No 489
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.56 E-value=6.3e+02 Score=24.90 Aligned_cols=129 Identities=19% Similarity=0.025 Sum_probs=64.0
Q ss_pred HHHHHHHCCCCCCccc--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 124 LYKQMLCTGISPDCLT--FPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF--VQNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 124 ~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
+++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 5666667787776543 234455555667765 444455666554422 11223445567788888777776433
Q ss_pred CC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCChHHHHHHH
Q 038890 200 NR----DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFS--WNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 200 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~ 257 (569)
.. +... .+.+...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+..++
T Consensus 93 ~~~~~~~~~g-~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 93 FADDVFYKDG-MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred cccccccCCC-CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 21 1111 123334445667666666665544332211 112233344556655444433
No 490
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.06 E-value=2.6e+02 Score=20.28 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.9
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHH
Q 038890 319 GKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEA 358 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (569)
....+.+++..+++.++.++..+|..+..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677888888888888888888888887776654433
No 491
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.49 E-value=6.2e+02 Score=24.46 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=50.8
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHccCCcHHHHHHHHHHHHh----CC
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL----TFPFLLKECTKRLDGLVGASVYGQVVKF----GV 168 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~ 168 (569)
...+.+-.++.+.+.+. ..+.+..+.++. ..|... ....++..|.+.+++..+...++.-+.. +.
T Consensus 103 ~lc~~l~~~~~~~~~p~------~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~ 175 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPL------RGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANP 175 (422)
T ss_pred HHHHHHHHHHHhcCCcc------ccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCC
Confidence 44566667777777776 655665555543 233332 2233455566777776666555432221 11
Q ss_pred CCcHhHH-HHHH---HHHHhcCCHHHHHHHHhhcCC
Q 038890 169 CDDVFVQ-NSVI---SLFMACGFVTSARMLFDEMSN 200 (569)
Q Consensus 169 ~~~~~~~-~~l~---~~~~~~g~~~~A~~~~~~~~~ 200 (569)
..+...+ .-+. -.|...++++.|+-+|+....
T Consensus 176 h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 176 HLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 1111111 1000 123455789999999888765
No 492
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=7.2e+02 Score=25.17 Aligned_cols=377 Identities=12% Similarity=0.081 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHCCCCC--CcccHHHHHHH-HHccCCcHHHHHHHHHHHHhC-CCCc-----HhHHHHHHHHHHhcC-C
Q 038890 118 SGKCLKLYKQMLCTGISP--DCLTFPFLLKE-CTKRLDGLVGASVYGQVVKFG-VCDD-----VFVQNSVISLFMACG-F 187 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~l~~~~~~~g-~ 187 (569)
...+++.++......++- ...|...+... +.-..+++.|+.-++...... .-|+ ..++..|...|.... .
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s 104 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS 104 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC
Confidence 337777777766532110 12233333333 233567788877776654421 1122 245666777777766 7
Q ss_pred HHHHHHHHhhcCC--CChhHH-----HHHHHHHHhcCCHHHHHHHHHhcCC-CCh--hHHHHHHHH------HHhCCC--
Q 038890 188 VTSARMLFDEMSN--RDVVSW-----NAMIIGYLRSGDLDVALDLFRRMKK-RNI--FSWNSIITG------FVQGGR-- 249 (569)
Q Consensus 188 ~~~A~~~~~~~~~--~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~------~~~~g~-- 249 (569)
+..+..++++..+ .+...| ..++..+.-..|+..|.+++.--.+ .|. ..|..++.. .....+
T Consensus 105 ~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~ 184 (629)
T KOG2300|consen 105 FPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDY 184 (629)
T ss_pred CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHH
Confidence 7788888777665 333333 3466777778999999998654332 222 223322221 122223
Q ss_pred -hHHHHHHHHHchhccccCCCCccHHH------HHH--HHHHHHccCCHHHHHHHHHHHHHh---CC------------C
Q 038890 250 -AREALELFQEMQSSSVEEMVKPDKIT------IAS--VLSACAYLGAIDHGKWVHGYLRRS---GL------------D 305 (569)
Q Consensus 250 -~~~a~~~~~~m~~~~~~~~~~p~~~~------~~~--ll~~~~~~~~~~~a~~~~~~~~~~---~~------------~ 305 (569)
+..+.....++. ..+.+|... |.. -+..|...|+...+...++++.+. +. .
T Consensus 185 dV~~ll~~~~qi~-----~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgs 259 (629)
T KOG2300|consen 185 DVEKLLQRCGQIW-----QNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGS 259 (629)
T ss_pred HHHHHHHHHHHHH-----hccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCC
Confidence 444555555553 334455432 222 233456678888777777776542 11 1
Q ss_pred CcchhHHHHHH----H--H-------HhcCChHH-------HHHHHhhCCCCC--hhH--------HHHHHHHHHHcCCh
Q 038890 306 CDVVIGTALVD----M--Y-------GKCGCVER-------AYGVFKEMPKKD--TLA--------WTAMISVFALNGYG 355 (569)
Q Consensus 306 ~~~~~~~~l~~----~--~-------~~~g~~~~-------A~~~~~~~~~~~--~~~--------~~~li~~~~~~g~~ 355 (569)
|.+..+..+.. + | ...|-+++ ++...++.++.| ... ...++.+-...|+.
T Consensus 260 ps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~ 339 (629)
T KOG2300|consen 260 PSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY 339 (629)
T ss_pred CChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 22222211111 0 0 01233344 444444444434 111 22223333457999
Q ss_pred hHHHHHHHHHHHCC-CCCC--HH-----HHHHHH-HHHHccCCHHHHHHHHHHhHHhcCCCCCHhH--HHHHHHHHHHcC
Q 038890 356 KEAFDTFREMEAEG-VRPN--HV-----TFVGLL-SACAHSGLVEKGRWCFVMMRHVYLVEPHVYH--YACMIDILSRAG 424 (569)
Q Consensus 356 ~~A~~~~~~m~~~~-~~p~--~~-----~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 424 (569)
.+|++-..+|.+.- -.|. .. ....++ ..|...+.++.|..-|....+... .-|... -..+.-.|.+.|
T Consensus 340 ~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~-~~dl~a~~nlnlAi~YL~~~ 418 (629)
T KOG2300|consen 340 VEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE-SIDLQAFCNLNLAISYLRIG 418 (629)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-HHHHHHHHHHhHHHHHHHhc
Confidence 99999999998632 2333 11 112222 335677899999988887764321 223222 245667789999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHH--------HHHHH--HHhcCCHHHHHHHHHHHhhcC-CC-----ChhHHHHHHHHHHH
Q 038890 425 LFSEAERLIRSMPMEPDVFVWG--------ALLGG--CQMHGNVELGEKVAQYLIDLD-PL-----NHAFYVNLCDMYAK 488 (569)
Q Consensus 425 ~~~~A~~~~~~~~~~p~~~~~~--------~l~~~--~~~~~~~~~a~~~~~~~~~~~-p~-----~~~~~~~l~~~~~~ 488 (569)
+.+.-.++++.++ +|+..++. .++.+ ....+++.+|...+.+..+.. .. ..-....|+..+..
T Consensus 419 ~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ls 497 (629)
T KOG2300|consen 419 DAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLS 497 (629)
T ss_pred cHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 9888888888884 22211111 11122 357889999999999888744 11 12234556677778
Q ss_pred cCChHHHHHHHHH
Q 038890 489 AGRFDDVKKTRNL 501 (569)
Q Consensus 489 ~g~~~~A~~~~~~ 501 (569)
.|+..++....+-
T Consensus 498 lgn~~es~nmvrp 510 (629)
T KOG2300|consen 498 LGNTVESRNMVRP 510 (629)
T ss_pred hcchHHHHhccch
Confidence 8888888775543
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.29 E-value=1e+03 Score=27.52 Aligned_cols=154 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHcCChhHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH-------HHHhHHhcCCCCCHhHH
Q 038890 347 SVFALNGYGKEAFD------TFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC-------FVMMRHVYLVEPHVYHY 413 (569)
Q Consensus 347 ~~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~ 413 (569)
......|.+.+|.+ ++......-.++....|..+...+-+.|+.++|... -+.+. ...-+.+...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~-g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL-GKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-cCCCHHHHHHh
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh-----cCCC---C
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM---------PMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLID-----LDPL---N 475 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-----~~p~---~ 475 (569)
..+.......+....|...+.+. +..|.......-+..+... ++++.|.++++.+.+ .+|. +
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 476 HAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
...+..+++.+...|++..|....+.
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhh
No 494
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.03 E-value=4.6e+02 Score=22.75 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=31.5
Q ss_pred CCCccHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHhCCCCc----chhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 268 MVKPDKITIASVLSACAYL----GAIDHGKWVHGYLRRSGLDCD----VVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 268 ~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
|..+|...++.++..+.+. +.++-+..+=.++...+...+ ......-++.|-..|||.+--.+|-.+.
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 4455666666555544332 223333333333333333322 2222333456666677766666655443
No 495
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=25.02 E-value=5.4e+02 Score=23.59 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV-----EKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
....++..+.+.+....|..+.+.+... +-=..+...++......... ......+....+-- ... ..|..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll--~~f-~~~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL--QEF-PEYLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH--HcC-cchHH
Confidence 3455666666667777777776666542 21233333333332211111 11111222221110 011 12444
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------hhHHHHHHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN-------HAFYVNLCDMYAK 488 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 488 (569)
++-.|.|.-+...=-.+|+..| .|. .|+.-|.+.|+++.|-.++--+...++.+ ...-..|+.....
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 4455555555555556666654 332 47778889999999988888776655332 2334456777888
Q ss_pred cCChHHHHHHHHHHHHCC
Q 038890 489 AGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (569)
.|+|+-+.++.+-+..-+
T Consensus 233 ~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALD 250 (258)
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 999999999999887654
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.81 E-value=1.6e+02 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChh
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLS 82 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 82 (569)
..++.++...+..-.|.++++.+.+.++..+. .+..+.+..+... |-+.
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~---~TVYR~L~~L~~~--Gli~ 52 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISL---ATVYRTLELLEEA--GLVR 52 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhC--CCEE
Confidence 45667777777777889999999988776666 6666777777777 6543
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.61 E-value=7.9e+02 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHc
Q 038890 237 WNSIITGFVQGGRAREALELFQEM 260 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m 260 (569)
...++.-|.+.+++++|..++..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Confidence 335666677777777777777776
No 498
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.53 E-value=49 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.002 Sum_probs=11.5
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHh
Q 038890 65 LITRLLFFCALSVSGSLSYATNVF 88 (569)
Q Consensus 65 ~~~~l~~~~~~~~~g~~~~A~~~~ 88 (569)
+...|+.++.+. |.-+-|..+|
T Consensus 65 T~~~L~~aL~~~--~~~diae~l~ 86 (86)
T cd08318 65 TPETLITALNAA--GLNEIAESLT 86 (86)
T ss_pred cHHHHHHHHHHc--CcHHHHHhhC
Confidence 445555555555 5555555443
No 499
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.41 E-value=7.7e+02 Score=25.18 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH----
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY---- 413 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 413 (569)
++..|-..+.-|...++|+.|+++.+-.. ....|..+........++.-++..|..+. ..|.+.|
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~------eqTMWAtlAa~Av~~~~m~~~EiAYaA~~-----~idKVsyin~i 640 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ------EQTMWATLAAVAVRKHQMQISEIAYAAAL-----QIDKVSYINHI 640 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc------chHHHHHHHHHHHhhccccHHHHHHHHhh-----chhhHHHHHHH
Q ss_pred -------HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 414 -------ACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 414 -------~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
..+.....-.|+..+|.-++...+.--.....+.-+. ++++|+++-.+-++.-|.-.....-.+.++
T Consensus 641 K~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~------nW~RALEl~~K~K~~v~~Vl~yR~KyLk~~ 714 (737)
T KOG1524|consen 641 KALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMH------NWRRALELSQKHKELVPRVLQYRRKYLKAL 714 (737)
T ss_pred hccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhh------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q ss_pred HHcC
Q 038890 487 AKAG 490 (569)
Q Consensus 487 ~~~g 490 (569)
.+..
T Consensus 715 g~~E 718 (737)
T KOG1524|consen 715 GREE 718 (737)
T ss_pred cccc
No 500
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.37 E-value=5.6e+02 Score=23.50 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=41.9
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACA 385 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 385 (569)
-++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ +...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677788888888999988888777544333333332222222222222221 111122222 345
Q ss_pred ccCCHHHHHHHHHHhHHh
Q 038890 386 HSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~ 403 (569)
..++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567777777777666543
Done!