Query 038890
Match_columns 569
No_of_seqs 559 out of 3720
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 06:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-38 5.4E-43 331.5 32.9 460 24-506 83-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-36 4.8E-41 316.8 31.0 458 6-487 100-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-27 2.8E-31 229.1 39.8 371 103-491 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-26 8.5E-31 225.7 38.1 353 143-505 5-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 7.4E-27 2.5E-31 233.2 19.6 183 235-422 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.9E-26 6.5E-31 230.3 19.0 198 120-321 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-23 3.6E-28 215.1 32.7 396 97-506 7-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 8.9E-23 3.1E-27 208.2 30.0 433 28-482 9-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 9.5E-23 3.3E-27 209.3 30.4 418 64-506 26-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 7E-22 2.4E-26 198.1 34.1 320 171-502 25-406 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.4E-22 1.5E-26 199.5 30.8 363 120-494 10-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.1E-21 2.1E-25 195.8 28.5 430 26-480 26-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.3E-19 2.5E-23 170.1 33.2 311 139-489 5-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.8E-19 3E-23 169.6 31.9 295 203-506 3-336 (359)
15 1fch_A Peroxisomal targeting s 99.8 1.2E-18 4E-23 169.5 23.7 293 185-501 38-355 (368)
16 2xm6_A Protein corresponding t 99.8 2.6E-16 8.9E-21 159.1 41.1 364 120-508 25-435 (490)
17 2xm6_A Protein corresponding t 99.8 1.3E-16 4.6E-21 161.2 38.0 365 95-488 38-452 (490)
18 3hym_B Cell division cycle pro 99.8 7.6E-18 2.6E-22 160.9 27.4 281 171-492 21-321 (330)
19 3hym_B Cell division cycle pro 99.8 1.2E-17 4.1E-22 159.5 26.5 265 232-505 20-299 (330)
20 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.6E-22 156.7 26.4 355 31-440 9-373 (449)
21 3mkr_A Coatomer subunit epsilo 99.8 2E-16 6.8E-21 147.5 31.2 271 211-499 7-288 (291)
22 2ooe_A Cleavage stimulation fa 99.8 4.3E-16 1.5E-20 159.2 36.3 408 64-505 14-492 (530)
23 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.9E-22 159.1 22.2 217 79-334 17-233 (449)
24 1xi4_A Clathrin heavy chain; a 99.8 2E-15 6.9E-20 159.9 39.8 377 64-498 986-1377(1630)
25 4eqf_A PEX5-related protein; a 99.8 8.6E-18 2.9E-22 163.2 20.2 257 237-501 68-352 (365)
26 1xi4_A Clathrin heavy chain; a 99.8 4.4E-15 1.5E-19 157.4 41.2 416 26-500 986-1440(1630)
27 2ooe_A Cleavage stimulation fa 99.8 5.4E-16 1.9E-20 158.4 33.9 414 22-474 10-495 (530)
28 1fch_A Peroxisomal targeting s 99.8 6.2E-17 2.1E-21 157.3 22.5 253 215-505 37-314 (368)
29 3cv0_A Peroxisome targeting si 99.8 7.9E-17 2.7E-21 153.6 21.9 271 205-502 23-312 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 3.8E-16 1.3E-20 145.6 24.7 247 241-506 6-265 (291)
31 4g1t_A Interferon-induced prot 99.7 7.1E-16 2.4E-20 155.3 28.2 354 136-508 50-462 (472)
32 4eqf_A PEX5-related protein; a 99.7 8.2E-17 2.8E-21 156.3 20.4 232 272-506 64-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 1.5E-15 5E-20 144.8 21.7 270 171-470 20-314 (327)
34 3uq3_A Heat shock protein STI1 99.7 8.4E-15 2.9E-19 134.3 22.8 219 275-506 7-237 (258)
35 2pl2_A Hypothetical conserved 99.7 7E-15 2.4E-19 130.9 20.0 196 305-503 2-212 (217)
36 4g1t_A Interferon-induced prot 99.7 1.5E-14 5.1E-19 145.6 24.7 364 96-483 51-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 1.1E-14 3.6E-19 133.6 19.6 236 235-484 6-255 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-14 6.9E-19 133.2 19.5 244 246-499 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.6 6.2E-14 2.1E-18 129.7 19.9 249 205-490 5-269 (272)
40 3spa_A Mtrpol, DNA-directed RN 99.6 4.1E-15 1.4E-19 152.9 12.6 112 340-452 128-246 (1134)
41 3spa_A Mtrpol, DNA-directed RN 99.6 1E-15 3.6E-20 157.2 8.3 123 204-330 128-258 (1134)
42 3e4b_A ALGK; tetratricopeptide 99.6 4.8E-13 1.6E-17 133.0 26.6 343 29-401 7-385 (452)
43 3e4b_A ALGK; tetratricopeptide 99.6 4.6E-14 1.6E-18 140.4 18.5 376 102-504 9-420 (452)
44 2ho1_A Type 4 fimbrial biogene 99.6 6.7E-13 2.3E-17 121.1 24.3 200 276-478 40-245 (252)
45 1ouv_A Conserved hypothetical 99.6 2.2E-12 7.5E-17 119.3 26.8 222 274-507 7-253 (273)
46 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 129.2 22.6 247 234-489 97-366 (382)
47 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.4E-17 116.8 24.4 203 273-478 8-218 (225)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4E-18 125.4 17.0 141 340-483 92-234 (243)
49 2h6f_A Protein farnesyltransfe 99.5 2.4E-13 8.4E-18 130.9 19.8 227 273-504 97-347 (382)
50 3u4t_A TPR repeat-containing p 99.5 6.2E-13 2.1E-17 122.9 21.9 227 276-506 6-251 (272)
51 1ouv_A Conserved hypothetical 99.5 3E-12 1E-16 118.4 26.4 226 233-476 5-256 (273)
52 2ho1_A Type 4 fimbrial biogene 99.5 7.7E-13 2.6E-17 120.7 21.5 197 308-506 37-239 (252)
53 2q7f_A YRRB protein; TPR, prot 99.5 3.1E-13 1.1E-17 122.5 18.5 197 307-506 22-223 (243)
54 2pl2_A Hypothetical conserved 99.5 4.9E-13 1.7E-17 118.8 19.2 192 234-435 5-210 (217)
55 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.6E-17 116.6 22.2 200 305-506 5-212 (225)
56 3sf4_A G-protein-signaling mod 99.5 3.3E-13 1.1E-17 132.6 19.2 120 204-323 10-142 (406)
57 3vtx_A MAMA; tetratricopeptide 99.5 2.3E-12 7.9E-17 111.3 22.1 166 338-506 4-171 (184)
58 4a1s_A PINS, partner of inscut 99.5 1.5E-13 5.1E-18 135.6 16.2 230 276-505 89-372 (411)
59 3ro2_A PINS homolog, G-protein 99.5 4.1E-13 1.4E-17 128.1 17.3 262 240-506 11-333 (338)
60 3sf4_A G-protein-signaling mod 99.5 5.8E-13 2E-17 130.9 18.2 297 169-493 6-364 (406)
61 4abn_A Tetratricopeptide repea 99.5 3.9E-13 1.3E-17 134.5 16.9 208 290-502 85-318 (474)
62 4e6h_A MRNA 3'-END-processing 99.5 7.9E-11 2.7E-15 121.1 34.0 415 43-477 50-576 (679)
63 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.1E-12 7.1E-17 119.5 19.6 237 149-397 17-269 (275)
64 4a1s_A PINS, partner of inscut 99.4 1.6E-12 5.4E-17 128.1 15.1 267 174-474 50-375 (411)
65 3ro2_A PINS homolog, G-protein 99.4 4E-12 1.4E-16 121.2 16.9 238 237-474 46-335 (338)
66 3ulq_A Response regulator aspa 99.4 4.6E-12 1.6E-16 123.5 17.4 224 281-505 111-368 (383)
67 3nf1_A KLC 1, kinesin light ch 99.4 8.7E-13 3E-17 124.4 11.7 240 235-504 28-306 (311)
68 3vtx_A MAMA; tetratricopeptide 99.4 9.9E-12 3.4E-16 107.3 17.2 167 307-476 4-175 (184)
69 2ond_A Cleavage stimulation fa 99.4 2.9E-10 9.7E-15 107.0 27.3 218 251-476 33-275 (308)
70 3ulq_A Response regulator aspa 99.4 3.4E-11 1.2E-15 117.4 21.1 233 240-472 109-369 (383)
71 3as5_A MAMA; tetratricopeptide 99.4 4.7E-11 1.6E-15 102.8 19.6 163 341-506 10-174 (186)
72 4gyw_A UDP-N-acetylglucosamine 99.4 1.8E-11 6.1E-16 127.4 19.6 163 338-504 8-173 (723)
73 2ond_A Cleavage stimulation fa 99.4 2.5E-10 8.7E-15 107.3 25.3 212 290-506 33-271 (308)
74 4e6h_A MRNA 3'-END-processing 99.4 1.3E-09 4.5E-14 112.1 31.6 404 94-506 64-571 (679)
75 1hz4_A MALT regulatory protein 99.3 9.2E-10 3.1E-14 106.7 29.0 263 239-505 19-322 (373)
76 3q15_A PSP28, response regulat 99.3 6.9E-10 2.3E-14 107.8 26.4 235 238-504 105-364 (378)
77 3q15_A PSP28, response regulat 99.3 9.4E-11 3.2E-15 113.9 19.6 162 340-501 142-328 (378)
78 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.7E-15 103.9 18.9 188 308-506 7-210 (228)
79 3nf1_A KLC 1, kinesin light ch 99.3 9.5E-12 3.2E-16 117.2 11.5 241 203-474 27-310 (311)
80 4abn_A Tetratricopeptide repea 99.3 7.8E-11 2.7E-15 117.9 18.3 211 120-335 86-319 (474)
81 4i17_A Hypothetical protein; T 99.3 3E-10 1E-14 101.7 19.2 204 270-485 4-223 (228)
82 3as5_A MAMA; tetratricopeptide 99.3 4.9E-10 1.7E-14 96.3 19.7 166 309-477 9-179 (186)
83 1hz4_A MALT regulatory protein 99.3 2.8E-09 9.7E-14 103.2 26.9 221 145-365 22-279 (373)
84 3edt_B KLC 2, kinesin light ch 99.2 3.8E-10 1.3E-14 104.4 16.6 235 246-504 13-280 (283)
85 3qky_A Outer membrane assembly 99.1 8.8E-09 3E-13 94.2 22.5 84 446-553 152-248 (261)
86 4gyw_A UDP-N-acetylglucosamine 99.1 7.1E-10 2.4E-14 115.5 15.2 160 308-471 9-174 (723)
87 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.3E-13 85.1 16.4 128 377-506 4-133 (136)
88 1qqe_A Vesicular transport pro 99.1 1E-08 3.5E-13 95.4 21.4 226 218-480 32-278 (292)
89 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.7E-14 102.1 14.0 186 317-502 46-266 (292)
90 3qky_A Outer membrane assembly 99.1 2.3E-09 7.8E-14 98.1 15.7 81 414-494 152-250 (261)
91 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.3E-13 91.9 21.2 159 341-504 102-281 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 9.5E-09 3.3E-13 91.5 19.2 61 447-507 152-215 (225)
93 3mv2_B Coatomer subunit epsilo 99.1 3.2E-08 1.1E-12 90.3 22.2 180 292-479 85-290 (310)
94 4ga2_A E3 SUMO-protein ligase 99.1 2.6E-10 9E-15 94.3 7.8 141 347-491 5-149 (150)
95 2pzi_A Probable serine/threoni 99.0 1.3E-09 4.5E-14 114.0 12.7 145 340-488 434-580 (681)
96 3edt_B KLC 2, kinesin light ch 99.0 2E-08 6.8E-13 92.7 19.2 213 234-471 43-281 (283)
97 3qou_A Protein YBBN; thioredox 99.0 1.5E-08 5.3E-13 93.9 18.0 176 324-503 102-282 (287)
98 3rjv_A Putative SEL1 repeat pr 99.0 3.2E-08 1.1E-12 87.1 18.7 163 337-508 16-200 (212)
99 2fo7_A Synthetic consensus TPR 99.0 2E-08 6.9E-13 80.8 16.2 131 341-474 3-135 (136)
100 2uy1_A Cleavage stimulation fa 99.0 3.2E-07 1.1E-11 91.6 26.3 351 79-470 28-412 (493)
101 4ga2_A E3 SUMO-protein ligase 98.9 1.9E-09 6.4E-14 89.1 7.6 124 380-505 3-129 (150)
102 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.7E-13 102.8 16.8 160 321-483 2-169 (568)
103 3dra_A Protein farnesyltransfe 98.9 2.6E-07 8.9E-12 85.2 21.9 221 251-480 50-297 (306)
104 2r5s_A Uncharacterized protein 98.9 2.1E-08 7.3E-13 85.4 13.3 156 345-504 12-172 (176)
105 3urz_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 86.0 15.7 182 275-475 6-190 (208)
106 3gyz_A Chaperone protein IPGC; 98.9 1E-08 3.4E-13 84.3 10.7 98 409-506 35-134 (151)
107 2vsy_A XCC0866; transferase, g 98.9 9E-08 3.1E-12 98.3 19.7 146 287-436 3-154 (568)
108 2pzi_A Probable serine/threoni 98.9 1.4E-07 4.7E-12 98.8 20.9 189 284-477 402-608 (681)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 7E-08 2.4E-12 90.4 16.3 221 246-498 3-254 (307)
110 4gco_A Protein STI-1; structur 98.8 8.1E-08 2.8E-12 76.4 13.9 107 376-484 15-123 (126)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.2E-07 4.2E-12 83.4 16.5 125 377-506 9-151 (213)
112 1a17_A Serine/threonine protei 98.8 1.4E-07 4.9E-12 79.1 15.8 128 375-504 14-145 (166)
113 3dra_A Protein farnesyltransfe 98.8 5.3E-06 1.8E-10 76.5 27.3 215 286-504 46-286 (306)
114 2r5s_A Uncharacterized protein 98.8 9.4E-08 3.2E-12 81.3 14.5 157 310-470 8-172 (176)
115 3u3w_A Transcriptional activat 98.8 1.2E-06 4.3E-11 81.3 23.2 161 344-504 80-265 (293)
116 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.9E-08 3E-12 85.2 14.0 184 272-476 3-218 (225)
117 2vgx_A Chaperone SYCD; alterna 98.8 2.5E-08 8.7E-13 82.0 9.5 98 409-506 20-119 (148)
118 3urz_A Uncharacterized protein 98.8 2.8E-07 9.7E-12 80.7 16.6 187 234-449 4-197 (208)
119 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.8E-12 87.3 15.4 133 372-506 115-249 (287)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 2.8E-07 9.5E-12 85.7 17.4 164 341-504 77-265 (293)
121 4gco_A Protein STI-1; structur 98.8 1.2E-07 4.1E-12 75.4 12.8 99 407-505 9-110 (126)
122 2uy1_A Cleavage stimulation fa 98.8 1.2E-06 4.2E-11 87.4 22.8 96 118-231 11-117 (493)
123 1na0_A Designed protein CTPR3; 98.8 3.1E-07 1E-11 72.6 15.1 115 374-490 9-125 (125)
124 2vyi_A SGTA protein; chaperone 98.7 2.4E-07 8.1E-12 73.9 14.0 117 374-492 12-130 (131)
125 3rjv_A Putative SEL1 repeat pr 98.7 3.9E-07 1.3E-11 80.1 16.0 172 120-304 4-199 (212)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1E-06 3.5E-11 77.4 18.8 125 345-475 12-154 (213)
127 2lni_A Stress-induced-phosphop 98.7 2.4E-07 8.4E-12 74.2 12.6 116 374-491 16-133 (133)
128 2c2l_A CHIP, carboxy terminus 98.7 7.6E-08 2.6E-12 88.8 10.4 192 310-508 6-202 (281)
129 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.7E-12 81.0 10.2 120 385-506 21-145 (177)
130 1p5q_A FKBP52, FK506-binding p 98.7 4.1E-07 1.4E-11 86.2 15.1 94 410-503 196-292 (336)
131 2xcb_A PCRH, regulatory protei 98.7 2.4E-07 8.2E-12 75.5 11.6 98 409-506 17-116 (142)
132 3upv_A Heat shock protein STI1 98.6 3.6E-07 1.2E-11 72.6 12.3 97 410-506 4-102 (126)
133 2ifu_A Gamma-SNAP; membrane fu 98.6 1.7E-07 5.8E-12 87.8 11.6 197 285-503 3-222 (307)
134 3gyz_A Chaperone protein IPGC; 98.6 5E-07 1.7E-11 74.1 12.0 104 371-476 32-138 (151)
135 3u3w_A Transcriptional activat 98.6 8.1E-06 2.8E-10 75.7 21.5 158 313-470 80-265 (293)
136 3gw4_A Uncharacterized protein 98.6 9.6E-07 3.3E-11 76.8 14.2 153 351-504 4-175 (203)
137 3q49_B STIP1 homology and U bo 98.6 1.1E-06 3.6E-11 71.0 13.2 100 407-506 6-107 (137)
138 1elw_A TPR1-domain of HOP; HOP 98.6 1.8E-06 6.3E-11 67.1 14.1 109 375-485 5-115 (118)
139 1hxi_A PEX5, peroxisome target 98.6 4.8E-07 1.6E-11 71.3 10.4 94 412-505 19-114 (121)
140 3sz7_A HSC70 cochaperone (SGT) 98.5 7.9E-07 2.7E-11 74.5 12.2 100 376-477 13-114 (164)
141 4f3v_A ESX-1 secretion system 98.5 3.6E-06 1.2E-10 75.8 17.0 134 344-482 107-247 (282)
142 2vgx_A Chaperone SYCD; alterna 98.5 2.8E-07 9.6E-12 75.6 9.1 105 374-480 21-127 (148)
143 2kck_A TPR repeat; tetratricop 98.5 6.5E-07 2.2E-11 69.1 10.6 99 409-507 5-108 (112)
144 3upv_A Heat shock protein STI1 98.5 1.6E-06 5.6E-11 68.7 13.1 111 375-487 5-123 (126)
145 2qfc_A PLCR protein; TPR, HTH, 98.5 2.2E-06 7.4E-11 79.6 15.9 161 310-470 77-265 (293)
146 3q7a_A Farnesyltransferase alp 98.5 0.00013 4.3E-09 68.1 27.1 231 244-483 64-344 (349)
147 4gcn_A Protein STI-1; structur 98.5 4.6E-07 1.6E-11 72.1 9.4 94 411-504 9-111 (127)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-06 4E-11 76.1 12.8 97 410-506 88-187 (198)
149 3q7a_A Farnesyltransferase alp 98.5 1E-05 3.6E-10 75.3 19.7 217 284-504 65-330 (349)
150 1na0_A Designed protein CTPR3; 98.5 1.6E-06 5.6E-11 68.2 12.5 97 410-506 9-107 (125)
151 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5.1E-11 69.5 12.3 100 407-506 13-114 (133)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.8E-06 6.3E-11 67.2 12.4 98 409-506 3-102 (118)
153 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.2E-11 71.2 11.7 106 375-482 19-126 (142)
154 2dba_A Smooth muscle cell asso 98.5 2.4E-06 8.4E-11 69.7 13.4 96 409-504 27-127 (148)
155 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.3E-11 75.4 12.9 152 320-471 4-176 (203)
156 2e2e_A Formate-dependent nitri 98.5 1.9E-06 6.6E-11 73.1 13.0 127 350-479 21-152 (177)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 2.8E-06 9.7E-11 71.0 13.2 93 341-436 13-105 (164)
158 1a17_A Serine/threonine protei 98.4 5.2E-06 1.8E-10 69.3 14.8 128 340-470 14-145 (166)
159 2hr2_A Hypothetical protein; a 98.4 1.5E-06 5E-11 70.6 10.6 94 412-505 13-131 (159)
160 4f3v_A ESX-1 secretion system 98.4 1.1E-05 3.6E-10 72.7 17.3 126 174-303 104-238 (282)
161 2vyi_A SGTA protein; chaperone 98.4 2.6E-06 8.8E-11 67.7 11.6 99 408-506 10-110 (131)
162 3q49_B STIP1 homology and U bo 98.4 3.6E-06 1.2E-10 67.7 12.5 113 372-486 7-126 (137)
163 2dba_A Smooth muscle cell asso 98.4 7.3E-06 2.5E-10 66.8 13.5 112 373-487 27-144 (148)
164 2xev_A YBGF; tetratricopeptide 98.3 2.5E-06 8.5E-11 67.9 9.9 91 415-505 7-105 (129)
165 1elr_A TPR2A-domain of HOP; HO 98.3 9.2E-06 3.2E-10 64.4 13.2 110 375-487 5-123 (131)
166 1ihg_A Cyclophilin 40; ppiase 98.3 6.4E-06 2.2E-10 79.0 13.7 90 409-498 272-363 (370)
167 1elr_A TPR2A-domain of HOP; HO 98.3 3.6E-06 1.2E-10 66.9 10.0 97 410-506 4-109 (131)
168 3dss_A Geranylgeranyl transfer 98.3 0.00014 4.7E-09 67.5 21.7 192 289-484 90-317 (331)
169 2kck_A TPR repeat; tetratricop 98.3 7.4E-06 2.5E-10 62.9 11.4 101 374-476 6-111 (112)
170 3dss_A Geranylgeranyl transfer 98.3 0.00023 7.8E-09 66.0 23.0 180 324-506 90-305 (331)
171 2xev_A YBGF; tetratricopeptide 98.3 1.6E-05 5.4E-10 63.1 13.6 103 379-483 7-117 (129)
172 1wao_1 Serine/threonine protei 98.3 2.6E-06 8.7E-11 84.9 10.5 118 381-500 13-134 (477)
173 1hxi_A PEX5, peroxisome target 98.3 4.3E-06 1.5E-10 65.7 9.7 98 377-476 20-119 (121)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1E-05 3.6E-10 80.1 14.7 96 410-505 317-415 (457)
175 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.9E-10 76.3 14.2 131 338-470 146-293 (336)
176 2fbn_A 70 kDa peptidylprolyl i 98.3 1.8E-06 6.1E-11 74.9 8.1 120 385-506 15-152 (198)
177 4gcn_A Protein STI-1; structur 98.3 7.4E-06 2.5E-10 65.0 11.0 97 376-474 10-115 (127)
178 3rkv_A Putative peptidylprolyl 98.3 5E-06 1.7E-10 69.3 10.4 64 442-505 63-126 (162)
179 3k9i_A BH0479 protein; putativ 98.3 1.3E-06 4.3E-11 68.4 6.2 83 423-505 3-90 (117)
180 2c2l_A CHIP, carboxy terminus 98.2 1.1E-05 3.9E-10 74.1 13.3 111 373-485 3-115 (281)
181 3ro3_A PINS homolog, G-protein 98.2 8E-06 2.7E-10 67.7 11.1 129 376-504 11-157 (164)
182 3rkv_A Putative peptidylprolyl 98.2 9.2E-06 3.2E-10 67.7 11.0 78 409-486 62-142 (162)
183 4b4t_Q 26S proteasome regulato 98.2 3.4E-05 1.2E-09 76.0 15.6 162 342-503 58-243 (434)
184 3n71_A Histone lysine methyltr 98.2 3.7E-05 1.3E-09 76.0 15.4 124 383-506 318-465 (490)
185 1wao_1 Serine/threonine protei 98.1 2.9E-05 9.9E-10 77.3 13.2 115 317-434 15-134 (477)
186 1dce_A Protein (RAB geranylger 98.1 0.00013 4.5E-09 73.9 18.2 168 324-494 45-244 (567)
187 2if4_A ATFKBP42; FKBP-like, al 98.1 1E-05 3.5E-10 76.6 8.8 147 339-505 179-328 (338)
188 3k9i_A BH0479 protein; putativ 98.1 6.4E-06 2.2E-10 64.3 6.2 93 387-479 3-98 (117)
189 3ro3_A PINS homolog, G-protein 98.0 2.7E-05 9.4E-10 64.3 10.5 132 341-472 11-159 (164)
190 4b4t_Q 26S proteasome regulato 98.0 9.8E-05 3.4E-09 72.6 15.9 205 347-554 12-250 (434)
191 1na3_A Designed protein CTPR2; 98.0 4.5E-05 1.5E-09 55.9 9.9 82 409-490 8-91 (91)
192 3ma5_A Tetratricopeptide repea 98.0 4.1E-05 1.4E-09 57.6 9.6 65 441-505 6-70 (100)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 7.7E-10 74.3 9.9 152 308-476 179-333 (338)
194 2l6j_A TPR repeat-containing p 98.0 1.9E-05 6.3E-10 60.7 7.7 92 409-500 3-102 (111)
195 2hr2_A Hypothetical protein; a 97.9 3.4E-05 1.2E-09 62.6 8.6 103 380-482 17-142 (159)
196 2kat_A Uncharacterized protein 97.9 8.6E-05 2.9E-09 57.4 10.4 78 428-505 3-82 (115)
197 1ihg_A Cyclophilin 40; ppiase 97.9 6.5E-05 2.2E-09 71.9 10.6 66 441-506 272-337 (370)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00023 7.7E-09 70.5 14.1 123 339-463 268-406 (457)
199 1zu2_A Mitochondrial import re 97.8 1.9E-05 6.6E-10 63.9 5.0 85 422-506 14-121 (158)
200 1dce_A Protein (RAB geranylger 97.7 0.00077 2.6E-08 68.3 16.8 151 351-505 40-221 (567)
201 3n71_A Histone lysine methyltr 97.7 0.00027 9.4E-09 69.8 12.7 114 419-551 318-449 (490)
202 3bee_A Putative YFRE protein; 97.7 0.00031 1.1E-08 51.6 9.8 70 439-508 3-75 (93)
203 1zu2_A Mitochondrial import re 97.7 5.5E-05 1.9E-09 61.2 6.0 112 387-507 15-149 (158)
204 2l6j_A TPR repeat-containing p 97.7 0.00018 6.1E-09 55.0 8.8 67 440-506 2-68 (111)
205 1klx_A Cysteine rich protein B 97.6 0.00071 2.4E-08 54.2 12.1 90 416-507 31-128 (138)
206 3qwp_A SET and MYND domain-con 97.6 0.00062 2.1E-08 66.2 13.6 116 417-551 294-427 (429)
207 2kat_A Uncharacterized protein 97.6 0.00044 1.5E-08 53.3 9.6 80 393-474 4-85 (115)
208 3lvg_A Clathrin heavy chain 1; 97.6 1.5E-06 5.1E-11 82.1 -5.7 369 95-493 53-513 (624)
209 1na3_A Designed protein CTPR2; 97.6 0.00041 1.4E-08 50.6 8.8 66 441-506 8-73 (91)
210 3qww_A SET and MYND domain-con 97.5 0.00039 1.3E-08 67.5 10.0 82 423-504 311-410 (433)
211 1pc2_A Mitochondria fission pr 97.5 0.0013 4.3E-08 52.6 10.8 91 439-556 29-124 (152)
212 1klx_A Cysteine rich protein B 97.4 0.0034 1.2E-07 50.2 13.0 113 353-474 9-129 (138)
213 1wy6_A Hypothetical protein ST 97.3 0.0088 3E-07 45.7 13.1 141 349-508 17-157 (172)
214 3ma5_A Tetratricopeptide repea 97.3 0.0008 2.7E-08 50.3 7.3 66 408-473 5-72 (100)
215 2kc7_A BFR218_protein; tetratr 97.2 0.0014 4.9E-08 48.6 8.1 62 418-479 8-72 (99)
216 3qww_A SET and MYND domain-con 97.1 0.0033 1.1E-07 61.0 11.9 95 386-480 310-425 (433)
217 3qwp_A SET and MYND domain-con 97.1 0.0061 2.1E-07 59.2 13.3 101 381-481 294-415 (429)
218 2kc7_A BFR218_protein; tetratr 97.1 0.0041 1.4E-07 46.0 9.6 53 382-436 8-61 (99)
219 3ly7_A Transcriptional activat 97.0 0.021 7.1E-07 53.2 15.5 63 441-504 276-338 (372)
220 2v5f_A Prolyl 4-hydroxylase su 96.9 0.011 3.7E-07 44.4 10.2 75 409-483 4-87 (104)
221 3mkq_A Coatomer beta'-subunit; 96.7 0.2 6.8E-06 53.4 23.0 153 146-333 608-761 (814)
222 3ly7_A Transcriptional activat 96.7 0.023 7.9E-07 52.9 13.3 139 336-476 191-344 (372)
223 3bee_A Putative YFRE protein; 96.6 0.011 3.9E-07 43.1 8.6 69 407-475 3-76 (93)
224 3mkq_A Coatomer beta'-subunit; 96.6 0.095 3.2E-06 55.9 19.6 155 242-436 607-762 (814)
225 1nzn_A CGI-135 protein, fissio 96.6 0.022 7.4E-07 43.7 10.0 65 440-504 33-102 (126)
226 1pc2_A Mitochondria fission pr 96.5 0.012 4E-07 47.0 8.6 89 390-480 14-109 (152)
227 3u64_A Protein TP_0956; tetrat 96.4 0.014 4.7E-07 52.1 8.7 84 426-509 179-273 (301)
228 3mkq_B Coatomer subunit alpha; 96.3 0.15 5.2E-06 41.7 14.2 104 317-438 14-117 (177)
229 1y8m_A FIS1; mitochondria, unk 96.2 0.2 7E-06 39.0 13.5 91 439-556 36-130 (144)
230 2v5f_A Prolyl 4-hydroxylase su 96.1 0.039 1.3E-06 41.2 9.2 65 441-505 4-75 (104)
231 1qsa_A Protein (soluble lytic 96.0 1.6 5.4E-05 44.3 27.3 306 148-470 17-347 (618)
232 4ady_A RPN2, 26S proteasome re 95.7 2.5 8.7E-05 44.6 28.0 410 6-453 218-672 (963)
233 3lvg_A Clathrin heavy chain 1; 95.7 0.0086 2.9E-07 57.1 4.6 239 64-329 55-325 (624)
234 3u64_A Protein TP_0956; tetrat 95.5 0.23 8E-06 44.3 12.7 120 79-200 135-268 (301)
235 1nzn_A CGI-135 protein, fissio 95.5 0.13 4.6E-06 39.3 9.7 90 389-480 16-112 (126)
236 4h7y_A Dual specificity protei 95.4 0.057 1.9E-06 42.5 7.4 53 456-508 74-126 (161)
237 1wy6_A Hypothetical protein ST 95.3 0.58 2E-05 36.0 12.2 146 140-304 8-156 (172)
238 3o48_A Mitochondria fission 1 94.9 0.22 7.4E-06 38.3 9.3 66 439-504 37-106 (134)
239 3mkq_B Coatomer subunit alpha; 94.7 1.5 5.1E-05 35.9 17.1 102 213-335 15-116 (177)
240 4gns_B Protein CSD3, chitin bi 93.6 0.98 3.4E-05 46.7 13.9 53 450-502 345-397 (754)
241 4h7y_A Dual specificity protei 92.9 1.8 6.1E-05 34.1 11.0 59 424-483 74-135 (161)
242 2ff4_A Probable regulatory pro 92.8 0.37 1.3E-05 46.0 8.9 66 445-510 174-244 (388)
243 3esl_A Checkpoint serine/threo 91.6 5.3 0.00018 33.3 14.8 108 427-560 61-173 (202)
244 4fhn_B Nucleoporin NUP120; pro 90.6 5 0.00017 44.4 16.0 163 208-392 817-989 (1139)
245 3ffl_A Anaphase-promoting comp 90.4 2 6.9E-05 34.5 9.2 114 377-502 23-148 (167)
246 4b4t_P 26S proteasome regulato 90.1 12 0.00042 36.1 16.6 180 322-503 30-245 (445)
247 1y8m_A FIS1; mitochondria, unk 90.0 5.7 0.0002 31.0 11.8 74 407-480 36-115 (144)
248 3o48_A Mitochondria fission 1 89.3 3.8 0.00013 31.5 9.5 74 407-480 37-116 (134)
249 4b4t_P 26S proteasome regulato 89.1 15 0.00051 35.5 16.3 189 247-436 29-244 (445)
250 4gns_B Protein CSD3, chitin bi 88.9 3.7 0.00013 42.5 12.2 83 408-490 611-708 (754)
251 1v54_E Cytochrome C oxidase po 88.7 2.9 9.8E-05 30.2 7.8 64 354-419 25-88 (109)
252 3ffl_A Anaphase-promoting comp 88.0 3.9 0.00013 32.9 9.2 26 411-436 123-148 (167)
253 2ff4_A Probable regulatory pro 88.0 1.9 6.5E-05 41.0 9.0 63 380-444 177-247 (388)
254 1v54_E Cytochrome C oxidase po 86.9 4.5 0.00015 29.3 7.9 51 433-483 36-86 (109)
255 4fhn_B Nucleoporin NUP120; pro 86.7 5.8 0.0002 43.9 13.1 124 379-508 817-970 (1139)
256 3txn_A 26S proteasome regulato 86.1 23 0.00079 33.4 21.1 285 205-508 21-346 (394)
257 3ltm_A Alpha-REP4; protein eng 86.0 14 0.00049 31.0 20.6 17 337-353 155-171 (211)
258 4a1g_A Mitotic checkpoint seri 84.8 11 0.00039 29.8 10.3 80 427-509 52-134 (152)
259 2y69_E Cytochrome C oxidase su 83.5 6.4 0.00022 30.2 7.8 64 354-419 68-131 (152)
260 3ltj_A Alpharep-4; protein eng 82.5 20 0.00068 29.8 19.2 16 338-353 151-166 (201)
261 2wvi_A Mitotic checkpoint seri 82.1 17 0.00057 29.3 10.4 81 427-510 47-130 (164)
262 2wpv_A GET4, UPF0363 protein Y 82.0 29 0.001 31.4 20.7 187 179-402 20-216 (312)
263 1zbp_A Hypothetical protein VP 81.6 5.8 0.0002 34.8 8.1 52 383-436 6-57 (273)
264 1zbp_A Hypothetical protein VP 81.4 4.8 0.00016 35.4 7.5 59 419-477 6-66 (273)
265 3txn_A 26S proteasome regulato 81.1 37 0.0013 32.0 26.8 284 174-472 21-344 (394)
266 3ltm_A Alpha-REP4; protein eng 81.1 23 0.0008 29.6 18.2 123 120-249 19-141 (211)
267 4ady_A RPN2, 26S proteasome re 80.2 66 0.0022 34.3 28.5 38 84-130 221-258 (963)
268 3ltj_A Alpharep-4; protein eng 79.8 25 0.00085 29.2 21.3 109 307-424 89-197 (201)
269 2uwj_G Type III export protein 79.7 15 0.0005 26.5 9.3 48 212-261 48-95 (115)
270 2y69_E Cytochrome C oxidase su 79.3 11 0.00039 28.8 7.9 55 429-483 75-129 (152)
271 2uwj_G Type III export protein 79.2 15 0.00052 26.4 9.4 87 288-379 21-107 (115)
272 2p58_C Putative type III secre 78.9 16 0.00054 26.4 10.2 43 182-226 50-92 (116)
273 2p58_C Putative type III secre 78.3 17 0.00056 26.2 10.2 88 287-379 21-108 (116)
274 1wdy_A 2-5A-dependent ribonucl 76.8 16 0.00054 32.3 10.2 103 124-231 20-130 (285)
275 1qsa_A Protein (soluble lytic 76.7 67 0.0023 32.5 34.6 243 248-510 228-484 (618)
276 2pk8_A Uncharacterized protein 73.7 2.3 7.9E-05 29.6 2.6 31 533-563 12-42 (103)
277 3lpz_A GET4 (YOR164C homolog); 69.2 69 0.0023 29.3 23.3 166 311-504 38-215 (336)
278 4b4t_R RPN7, 26S proteasome re 67.9 12 0.00043 35.9 7.5 96 376-471 133-237 (429)
279 4aez_C MAD3, mitotic spindle c 65.9 44 0.0015 28.3 9.4 79 428-509 102-183 (223)
280 3lpz_A GET4 (YOR164C homolog); 63.1 91 0.0031 28.5 25.5 185 180-401 20-214 (336)
281 4b4t_R RPN7, 26S proteasome re 61.7 73 0.0025 30.5 11.6 96 309-404 132-238 (429)
282 4gq2_M Nucleoporin NUP120; bet 60.3 82 0.0028 33.9 12.7 104 380-489 816-949 (950)
283 2wpv_A GET4, UPF0363 protein Y 54.0 1.3E+02 0.0043 27.3 23.6 167 311-503 36-215 (312)
284 3mv2_A Coatomer subunit alpha; 52.5 1.3E+02 0.0046 27.1 12.0 60 432-505 195-256 (325)
285 1oyz_A Hypothetical protein YI 50.8 1.3E+02 0.0043 26.3 22.3 181 64-250 38-222 (280)
286 3esl_A Checkpoint serine/threo 50.7 53 0.0018 27.4 7.2 93 5-103 59-153 (202)
287 1wdy_A 2-5A-dependent ribonucl 49.2 88 0.003 27.2 9.5 112 71-200 10-130 (285)
288 3kea_A K1L; tropism, ANK repea 45.7 1.6E+02 0.0054 25.9 10.9 31 124-154 46-76 (285)
289 2d2s_A Exocyst complex compone 44.5 1.2E+02 0.0041 26.1 8.9 27 476-502 91-117 (235)
290 2nsz_A Programmed cell death p 44.4 78 0.0027 24.1 7.0 62 312-373 11-77 (129)
291 3kea_A K1L; tropism, ANK repea 43.5 1.2E+02 0.004 26.8 9.3 183 315-511 35-223 (285)
292 4g8k_A 2-5A-dependent ribonucl 41.9 1.9E+02 0.0067 25.9 12.4 113 100-228 27-147 (337)
293 1ya0_A SMG-7 transcript varian 40.8 1E+02 0.0035 30.1 8.8 65 422-486 164-230 (497)
294 4b4t_S RPN3, 26S proteasome re 40.8 1.8E+02 0.006 28.5 10.2 63 235-301 232-298 (523)
295 3eu9_A Huntingtin-interacting 40.5 1.6E+02 0.0055 24.5 9.8 15 318-332 217-231 (240)
296 2ion_A PDCD4, programmed cell 40.4 1.3E+02 0.0046 23.6 8.3 55 207-261 13-72 (152)
297 4b4t_S RPN3, 26S proteasome re 40.2 76 0.0026 31.0 7.6 62 375-436 232-296 (523)
298 4gq2_M Nucleoporin NUP120; bet 39.8 3.1E+02 0.01 29.5 13.1 127 209-353 816-950 (950)
299 3bqo_A Telomeric repeat-bindin 38.8 85 0.0029 25.9 6.4 33 450-482 125-157 (211)
300 2d2s_A Exocyst complex compone 38.0 89 0.003 26.9 7.1 21 241-261 25-45 (235)
301 1oyz_A Hypothetical protein YI 37.3 2.1E+02 0.0071 24.9 22.3 18 306-323 140-157 (280)
302 1bd8_A P19INK4D CDK4/6 inhibit 36.9 1.4E+02 0.0046 22.9 7.9 45 181-227 107-154 (156)
303 2ion_A PDCD4, programmed cell 36.3 68 0.0023 25.3 5.6 61 312-372 13-78 (152)
304 2nsz_A Programmed cell death p 35.9 1.4E+02 0.0049 22.6 9.7 55 207-261 11-70 (129)
305 2fu4_A Ferric uptake regulatio 35.3 1E+02 0.0035 20.8 6.4 62 126-188 6-68 (83)
306 4a1g_A Mitotic checkpoint seri 34.0 90 0.0031 24.6 5.8 52 120-171 83-135 (152)
307 1n11_A Ankyrin; clathrin, BAND 32.4 1.4E+02 0.0049 28.2 8.5 16 182-197 87-102 (437)
308 3eu9_A Huntingtin-interacting 31.8 1.5E+02 0.0051 24.8 7.8 49 316-365 182-233 (240)
309 1k1a_A B-cell lymphoma 3-encod 31.4 2.3E+02 0.0077 23.7 9.0 11 185-195 126-136 (241)
310 2crb_A Nuclear receptor bindin 31.2 81 0.0028 22.2 4.4 25 478-502 17-41 (97)
311 2wvi_A Mitotic checkpoint seri 30.4 2.1E+02 0.0071 22.9 7.8 54 120-173 78-132 (164)
312 3ljn_A Hypothetical protein; a 28.6 3.3E+02 0.011 24.7 10.1 81 79-170 31-114 (364)
313 2fe3_A Peroxide operon regulat 28.4 1E+02 0.0035 23.9 5.5 12 120-131 39-50 (145)
314 3jxi_A Vanilloid receptor-rela 28.3 72 0.0025 27.5 5.2 115 106-227 12-161 (260)
315 2zu6_B Programmed cell death p 27.7 3.3E+02 0.011 24.4 12.7 26 176-201 7-32 (307)
316 3eiq_C Programmed cell death p 27.3 3.7E+02 0.013 24.8 15.0 28 175-202 57-84 (358)
317 4aez_C MAD3, mitotic spindle c 26.1 1.2E+02 0.0041 25.7 5.6 52 120-171 132-184 (223)
318 2r9g_A AAA ATPase, central reg 26.0 2.8E+02 0.0097 23.0 8.3 64 237-305 14-85 (204)
319 3ygs_P Procaspase 9; apoptosis 25.7 1E+02 0.0035 22.0 4.6 36 187-222 52-87 (97)
320 3ygs_P Procaspase 9; apoptosis 25.5 81 0.0028 22.5 4.0 38 322-359 51-88 (97)
321 4ets_A Ferric uptake regulatio 23.9 1E+02 0.0036 24.5 4.8 27 99-131 35-61 (162)
322 3bge_A Predicted ATPase; struc 23.9 2.9E+02 0.0099 22.8 7.2 47 237-287 7-56 (201)
323 2xig_A Ferric uptake regulatio 23.8 1.2E+02 0.0041 23.7 5.1 13 120-132 44-56 (150)
324 3aji_A 26S proteasome non-ATPa 23.5 3.1E+02 0.011 22.6 9.3 173 69-258 9-193 (231)
325 3qye_A TBC1 domain family memb 23.1 4.2E+02 0.014 23.9 10.6 126 120-249 167-309 (331)
326 1k1a_A B-cell lymphoma 3-encod 23.1 3.2E+02 0.011 22.6 8.4 85 144-229 13-102 (241)
327 2cfu_A SDSA1; SDS-hydrolase, l 22.5 2.3E+02 0.0077 28.9 8.1 63 426-491 436-498 (658)
328 3eyy_A Putative iron uptake re 21.5 1.4E+02 0.0048 23.2 5.0 13 120-132 35-47 (145)
329 3ctd_A Putative ATPase, AAA fa 21.5 3.6E+02 0.012 22.5 7.7 68 233-304 31-106 (213)
330 1oai_A Nuclear RNA export fact 21.2 78 0.0027 20.2 2.8 24 387-410 33-56 (59)
331 1mzb_A Ferric uptake regulatio 20.9 2.1E+02 0.0071 21.8 5.9 42 100-147 21-63 (136)
332 4g8k_A 2-5A-dependent ribonucl 20.8 4.3E+02 0.015 23.5 9.2 45 147-198 280-324 (337)
333 3i5p_A Nucleoporin NUP170; hel 20.8 6E+02 0.021 24.9 13.8 67 439-508 175-249 (525)
334 1mzb_A Ferric uptake regulatio 20.6 2.5E+02 0.0086 21.3 6.3 61 127-188 8-69 (136)
335 3ljn_A Hypothetical protein; a 20.6 3.2E+02 0.011 24.8 8.3 217 271-501 16-266 (364)
336 2o03_A Probable zinc uptake re 20.2 1.3E+02 0.0044 22.8 4.5 45 101-151 15-59 (131)
337 2pnn_A Transient receptor pote 20.2 3.2E+02 0.011 23.4 7.9 126 94-227 9-169 (273)
338 3bu8_A Telomeric repeat-bindin 20.1 1.5E+02 0.0051 24.9 4.8 53 447-499 119-171 (235)
339 2fe3_A Peroxide operon regulat 20.1 3E+02 0.01 21.2 6.9 59 365-425 13-71 (145)
340 2f8y_A Notch homolog 1, transl 20.0 3E+02 0.01 22.5 7.5 89 31-137 28-120 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-38 Score=331.51 Aligned_cols=460 Identities=9% Similarity=-0.030 Sum_probs=392.3
Q ss_pred CCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC--CCCcccHHH
Q 038890 24 KESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK--RSDLYTYNI 101 (569)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 101 (569)
+...+..++..+...|++++|..+++.+.... |+. ..+..++..|.+. |++++|..+|+.+. .++..+|+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~---~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~ 155 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP---NDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH---HHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc---hHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHH
Confidence 34456778888889999999999999999653 455 6778899999999 99999999999984 678999999
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHC---------------CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCT---------------GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 166 (569)
++.+|.+.|+++ +|+++|+++... |.+++..+|..++.++.+.|++++|..+|+++.+.
T Consensus 156 l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 156 AAFCLVKLYDWQ------GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHTTCHH------HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH------HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999 999999953221 22335778999999999999999999999999998
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHH---HhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARML---FDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSW 237 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 237 (569)
++. +...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..+|
T Consensus 230 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 230 DAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp CTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred Cch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 744 556666666555433332221111 222222 2334567778889999999999999999987 788999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID-----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 999999999999999999999997422 3467789999999999999999999999998764 6678899999999
Q ss_pred HHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998753 467899999999999999999999999999863 347789999999999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD--VFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.+
T Consensus 462 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 462 EYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998654 567899999999999999999999999988 44777 789999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-36 Score=316.78 Aligned_cols=458 Identities=9% Similarity=-0.038 Sum_probs=386.9
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
.+.|..+++.+.+.. |+..+...++.++..+|++++|..+|+.+... ++++ .++..++..|.++ |++++|.
T Consensus 100 ~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~l~~~~~~~--g~~~~A~ 170 (597)
T 2xpi_A 100 YKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSS---ACRYLAAFCLVKL--YDWQGAL 170 (597)
T ss_dssp HHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCH---HHHHHHHHHHHHT--TCHHHHH
T ss_pred chHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccch---hHHHHHHHHHHHH--hhHHHHH
Confidence 355666777665444 35577888999999999999999999988654 5566 8999999999999 9999999
Q ss_pred HHhhcCCCC-------------------CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHH
Q 038890 86 NVFSHIKRS-------------------DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLK 145 (569)
Q Consensus 86 ~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 145 (569)
++|+++... +..+|+.++.+|.+.|++. +|+++|++|.+.+ |+.. .+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~--p~~~~~~~~l~~ 242 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD------RAKECYKEALMVD--AKCYEAFDQLVS 242 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--chhhHHHHHHHH
Confidence 999965433 3789999999999999999 9999999999854 6543 4444444
Q ss_pred HHHccCCcHHH--HHH-HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHH
Q 038890 146 ECTKRLDGLVG--ASV-YGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 146 ~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 220 (569)
.+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 33332222211 111 44455555555666778888999999999999999999988 78999999999999999999
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 221 VALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHG 297 (569)
Q Consensus 221 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 297 (569)
+|+.+|+++.+ .+..+++.++.+|.+.|++++|..+++++.+. .+.+..++..++..|.+.|++++|..+|+
T Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999863 36778999999999999999999999999732 25678899999999999999999999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 998865 55678999999999999999999999998753 477899999999999999999999999998763 3478
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LVEPH--VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGA 447 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 447 (569)
.+|..++.+|.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999999999999998542 45677 789999999999999999999999998 3334 7899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
+..+|...|++++|.+.++++.+.+|.++.++..++.+|.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.2e-27 Score=229.13 Aligned_cols=371 Identities=13% Similarity=0.061 Sum_probs=314.0
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL 181 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 181 (569)
...+.+.|+++ +|++.++.+.+. .|+.. .+..+...+...|+++.|...++..++..+ .+...+..+..+
T Consensus 6 a~~~~~~g~~~------~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~ 76 (388)
T 1w3b_A 6 AHREYQAGDFE------AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHH------HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHCCCHH------HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHH
Confidence 34556677777 999999999874 46554 444555667888999999999999988763 477889999999
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|..
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999998865 4 456799999999999999999999998864 43 4567788889999999999999
Q ss_pred HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 256 ~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
.|+++... .+.+..++..+..++...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..
T Consensus 157 ~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 157 CYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998742 23457888999999999999999999999999875 5567788899999999999999999998764
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 336 K---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 336 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
. .+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+.. +.+..+
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHH
Confidence 3 367888999999999999999999999998853 2246788889999999999999999999998654 667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+..+...+.+.|++++|...++++ ...| +..++..+..++.+.|++++|...++++.+..|.++.++..++..+.+.|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999988 5555 57789999999999999999999999999999999999999999888776
Q ss_pred C
Q 038890 491 R 491 (569)
Q Consensus 491 ~ 491 (569)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.5e-26 Score=225.71 Aligned_cols=353 Identities=13% Similarity=0.049 Sum_probs=309.1
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCH
Q 038890 143 LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDL 219 (569)
Q Consensus 143 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 219 (569)
+...+.+.|++++|...+..+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345567889999999999999988644 567777888899999999999999988765 4667899999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 220 DVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 220 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++|+..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999863 4 45679999999999999999999999997421 334566777888899999999999999
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+++.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9999875 55678899999999999999999999998764 356788999999999999999999999998753 224
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 451 (569)
..++..+..++...|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|++.|+++ ..+.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 6788899999999999999999999998643 446788999999999999999999999998 334578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...|++++|...++++.+..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.4e-27 Score=233.23 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHhCCC
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA---------IDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~ 305 (569)
..++.+|.+|++.|++++|+++|++|. ..|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~----~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR----RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH----HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 357778888888888888888888888 67788888888888888876554 67788888888888888
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
||..+|++||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8888888888888888888888888888853 688888888888888899999999999999889999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
.+|++.|+.++|.++|++|. ..+..|+..+|+.++..|..
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999988 67778898999888888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.9e-26 Score=230.30 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---------HH
Q 038890 120 KCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF---------VT 189 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~ 189 (569)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4566677787777766544 5888999999999999999999999999999999999999999987765 68
Q ss_pred HHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 190 SARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMK----KRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 190 ~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999965 899999999999999999999999999997 3799999999999999999999999999999
Q ss_pred hccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc
Q 038890 262 SSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC 321 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (569)
..|+.||..||+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ----~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ----ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ----HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ----hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-23 Score=215.10 Aligned_cols=396 Identities=10% Similarity=-0.069 Sum_probs=313.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN 176 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 176 (569)
..|......+.+.|++. +|+..|+++.+.+ |+..+|..+..++...|+++.|...++.+++.++. +...+.
T Consensus 7 ~~~~~~g~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 77 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYD------DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHTSCHH------HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred HHHHHHHHHHHHhccHH------HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHH
Confidence 34556667788888888 9999999998854 78888888999999999999999999999988743 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHH---------------------------
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLF--------------------------- 226 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------- 226 (569)
.+..+|.+.|++++|...|+++.. .+......++..+........+.+.+
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 899999999999999999988754 23333333333333322222222211
Q ss_pred -----------HhcC---------CC-ChhHHHHHHHHHHh---CCChHHHHHHHHHchh-----ccc-cCC---CCccH
Q 038890 227 -----------RRMK---------KR-NIFSWNSIITGFVQ---GGRAREALELFQEMQS-----SSV-EEM---VKPDK 273 (569)
Q Consensus 227 -----------~~~~---------~~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~-~~~---~~p~~ 273 (569)
.... .| +...+......+.. .|++++|...|+++.. ... ... .+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 1111 01 13344445555554 8999999999999873 100 000 03346
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFA 350 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 350 (569)
.++..+..++...|++++|...++.+.+.... ...+..+...|...|++++|...|+.+.. .+...|..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 67888889999999999999999999987633 88889999999999999999999998754 36678999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
..|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999988632 356788889999999999999999999998654 456788999999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 431 RLIRSM----PMEPD----VFVWGALLGGCQM---HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 431 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988 22222 4488899999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 038890 500 NLMKERG 506 (569)
Q Consensus 500 ~~m~~~g 506 (569)
++..+..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.9e-23 Score=208.24 Aligned_cols=433 Identities=9% Similarity=-0.067 Sum_probs=314.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHH
Q 038890 28 KLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIR 104 (569)
Q Consensus 28 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 104 (569)
....+..+...|++++|...|+.+++.. |++ ..+..+...|... |++++|...|+++. ..+...|..+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~---~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDP---VFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccH---HHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 4567777888899999999999998876 355 7888888888888 99999999888766 235577888888
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH---HHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV---ISL 181 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~ 181 (569)
++...|++. +|+..|+++...+ +++......++..+........+.+.+..+...+..|+....+.- ...
T Consensus 82 ~~~~~g~~~------~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 82 ANEGLGKFA------DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHTTCHH------HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHhhHH------HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 888888888 9999999988864 234445545554444333333333333222221111111111100 000
Q ss_pred HHhcCCHHHHHHHHhhcCC---------C-ChhHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C
Q 038890 182 FMACGFVTSARMLFDEMSN---------R-DVVSWNAMIIGYLR---SGDLDVALDLFRRMKK----------------R 232 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~ 232 (569)
.........+...+..... | +...+......+.. .|++++|+..|+++.+ |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 0111111112222222211 1 23445555555554 8999999999988654 1
Q ss_pred -ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 233 -NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 233 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
+..++..+...+...|++++|...|+++... .|+...+..+..++...|++++|...++.+.+.. +.+..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 2456788889999999999999999998742 2337888889999999999999999999998765 5567788
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
..+...|...|++++|...|+.+.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998643 366788899999999999999999999998753 335678888899999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSR---AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 459 (569)
++++|...++.+.+...-.++ ...+..+..++.. .|++++|...++++ ...| +..++..+...+...|+++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 999999999998854421222 3388999999999 99999999999988 3334 6778899999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHH
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+|...++++.+..|.++..+..+
T Consensus 467 ~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 467 EAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999988877665
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=9.5e-23 Score=209.30 Aligned_cols=418 Identities=8% Similarity=0.015 Sum_probs=284.8
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-Cccc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLT 139 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~ 139 (569)
..+..+...+.+. |++++|.+.|+++. ..+...|..+...+...|++. +|++.|+++.+.+ | +..+
T Consensus 26 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~ 95 (537)
T 3fp2_A 26 VQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE------KVIEFTTKALEIK--PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcC--CchHHH
Confidence 4455556666666 66777776666654 235566666666666666666 7777777666632 3 3445
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHH
Q 038890 140 FPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR------DVVSWNAMIIGY 213 (569)
Q Consensus 140 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~ 213 (569)
+..+...+...|++++|...|+ ..... |+. .+..+..+...+....|...++.+... ........+..+
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH
Confidence 5556666666677777776664 32222 111 112233444445556666666665441 111223344445
Q ss_pred HhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHhC--------CChHHHHHHHHHchhccccCCCCcc-------HHH
Q 038890 214 LRSGDLDVALDLFRRMKKRNIF---SWNSIITGFVQG--------GRAREALELFQEMQSSSVEEMVKPD-------KIT 275 (569)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~p~-------~~~ 275 (569)
....+.+.+...+......+.. ....+...+... |++++|..+|+++.+.. +.+ ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALA 245 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHH
Confidence 5566666666655555543322 233333333222 47888888888887321 122 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
+..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 6666677888899999999999988864 4477888888899999999999999987653 4677888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999988753 2245678888889999999999999999988654 45677888899999999999999999
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 433 IRSM----P----MEPDVFVWGALLGGCQMH----------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 433 ~~~~----~----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
|+++ + .......+......+... |++++|...++++.+..|.++.++..++.+|.+.|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9887 1 111233345556667777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCC
Q 038890 495 VKKTRNLMKERG 506 (569)
Q Consensus 495 A~~~~~~m~~~g 506 (569)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999987754
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7e-22 Score=198.06 Aligned_cols=320 Identities=13% Similarity=0.095 Sum_probs=235.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.+ .+..++..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344455555555555555555555555443 2344555555555555555555555555542 2345666666777
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCcc-H---HHHHHH------------HHHHHccCCHHHHHHHHHHHHHhCCCCcc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPD-K---ITIASV------------LSACAYLGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
.+.|++++|...|+++.. ..|+ . ..+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 105 ~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 777777777777777652 1222 2 333333 445788899999999999988765 5677
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH----
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGL---- 380 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l---- 380 (569)
.++..++.+|.+.|++++|...|+++.+ .+..+|..++..+...|++++|+..|+++... .|+ ...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 8888899999999999999999988753 46788999999999999999999999999864 344 3344433
Q ss_pred --------HHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038890 381 --------LSACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVW 445 (569)
Q Consensus 381 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 445 (569)
...+...|++++|...|+.+.+.. |+ ...|..+..++.+.|++++|+..++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 788899999999999999998643 43 457888999999999999999999998 4445 68899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH------------HHHcC-----ChHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM------------YAKAG-----RFDDVKKTRNLM 502 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 502 (569)
..+..+|...|++++|...++++.+..|.++.++..++.+ |...| +.+++.+.++++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988844 44444 556677777764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.4e-22 Score=199.50 Aligned_cols=363 Identities=10% Similarity=-0.006 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
.+...+....... +.+...+..+...+.+.|+++.|..+|+.+++..+. +..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555555532 235567888888999999999999999999987643 78889999999999999999999999987
Q ss_pred C---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHH------------HHHHHhCCChHHHHHHHH
Q 038890 200 N---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RN-I---FSWNSI------------ITGFVQGGRAREALELFQ 258 (569)
Q Consensus 200 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~g~~~~a~~~~~ 258 (569)
+ .+..++..+...|.+.|++++|...|+++.+ |+ . ..+..+ ...+.+.|++++|+..|+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 3567899999999999999999999999875 32 2 455544 445889999999999999
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-- 336 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 336 (569)
++... .+.+..++..+..++...|++++|...++++.+.. +.+..++..++..|...|++++|...|+++..
T Consensus 168 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 168 KILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99742 24578889999999999999999999999998875 56788899999999999999999999998753
Q ss_pred -CChhHHHHH------------HHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 337 -KDTLAWTAM------------ISVFALNGYGKEAFDTFREMEAEGVRPN-----HVTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 337 -~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
.+...+..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 244445444 78899999999999999999884 444 3478888899999999999999999
Q ss_pred HhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 038890 399 MMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGG------------CQMHG-----NVE 459 (569)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~ 459 (569)
.+.+.. +.+...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 988543 457899999999999999999999999998 66674 5566665533 33334 567
Q ss_pred HHHHHHHH-HhhcCCCCh----------hHHHHHHHHHHHcCChHH
Q 038890 460 LGEKVAQY-LIDLDPLNH----------AFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 460 ~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~ 494 (569)
++.+.+++ +.+..|++. ..+..+..+|...|+.++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 77888886 666666532 134555556655555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=6.1e-21 Score=195.80 Aligned_cols=430 Identities=11% Similarity=-0.033 Sum_probs=325.9
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIM 102 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 102 (569)
......+..+...|++++|...|+..++..+ .++ ..+..+...|.+. |++++|.+.|+++. ..+...|..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~---~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEP---VFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCH---HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCc---HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4556788889999999999999999998743 344 7899999999999 99999999999876 3467788999
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCC--CCcHhHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGV--CDDVFVQNSVIS 180 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~ 180 (569)
...+...|++. +|++.|+.+ . ..|+... ..+..+...+....|...++.++...+ .+........+.
T Consensus 100 a~~~~~~g~~~------~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 100 ASANESLGNFT------DAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHTCHH------HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHcCCHH------HHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 99999999999 999999743 3 2233221 223334445556788888888866421 111111233455
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHHhcCC--CC--------hhHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSNRDVV---SWNAMIIGYLR--------SGDLDVALDLFRRMKK--RN--------IFSWNS 239 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~ 239 (569)
.+....+.+.+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY 248 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence 566788888888777776664433 33333333322 2588999999998875 32 225677
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYG 319 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (569)
+...+...|++++|...|+++.. ..|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 77889999999999999999984 24667888899999999999999999999999876 566788999999999
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 320 KCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 320 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
..|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998753 356789999999999999999999999998863 33566888899999999999999999
Q ss_pred HHHhHHhcCCCC----CHhHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 397 FVMMRHVYLVEP----HVYHYACMIDILSRA----------GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 397 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
|+.+.+...-.+ ....+..+..++.+. |++++|...|+++ ...| +..++..+...+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 999875431111 122345556778888 9999999999998 3344 67889999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~ 480 (569)
|.+.++++.+..|.+.....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999876644
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.3e-19 Score=170.14 Aligned_cols=311 Identities=12% Similarity=0.005 Sum_probs=193.6
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038890 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGD 218 (569)
Q Consensus 139 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (569)
.+..+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 3444555556666666666666666665432 4555555666666666666666665554330
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc----cHHHHHHH------------HHH
Q 038890 219 LDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP----DKITIASV------------LSA 282 (569)
Q Consensus 219 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p----~~~~~~~l------------l~~ 282 (569)
...+...+..+...+...|++++|...|+++.+ ..| +...+..+ ...
T Consensus 67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 011233444444444455555555555554431 112 22222222 455
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHH
Q 038890 283 CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 283 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 359 (569)
+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+ .+...+..+...+...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777777766654 44556666777777777777777777766543 35566777777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH----hHHHHHHHHHHH
Q 038890 360 DTFREMEAEGVRPN-HVTFV------------GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV----YHYACMIDILSR 422 (569)
Q Consensus 360 ~~~~~m~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 422 (569)
..|++..+. .|+ ...+. .+...+...|++++|...++.+.+.. +.+. ..+..+..++..
T Consensus 209 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 209 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence 777777664 222 22222 22556777888888888888887543 2222 234557778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 423 AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
.|++++|...+++. ...| +..++..+...+...|++++|...++++.+..|.++.++..+..++...
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88888888888877 3334 6678888888888888888888888888888888888777777665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=8.8e-19 Score=169.55 Aligned_cols=295 Identities=14% Similarity=0.070 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHH
Q 038890 203 VVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASV 279 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~l 279 (569)
+..+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|...|+++.+. .+.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHHHH
Confidence 44566777778888888888888887753 35678888999999999999999999998742 13467888999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCC---CcchhHHHH------------HHHHHhcCChHHHHHHHhhCCC---CChhH
Q 038890 280 LSACAYLGAIDHGKWVHGYLRRSGLD---CDVVIGTAL------------VDMYGKCGCVERAYGVFKEMPK---KDTLA 341 (569)
Q Consensus 280 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 341 (569)
..++...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...|+++.+ .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999998764 3 344555444 5788999999999999998753 46788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH-------
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA------- 414 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 414 (569)
+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHH
Confidence 9999999999999999999999998863 3467888999999999999999999999998654 33344333
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 415 -----CMIDILSRAGLFSEAERLIRSM-PMEPD-V----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 415 -----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...++++.+..|.++.++..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999988 33343 3 23556778899999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+|.+.|++++|...+++..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998743
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.2e-18 Score=169.53 Aligned_cols=293 Identities=12% Similarity=0.017 Sum_probs=188.3
Q ss_pred cCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHH
Q 038890 185 CGFVTSARM-LFDEMSN--R-----DVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREA 253 (569)
Q Consensus 185 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 253 (569)
.|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+ .+..++..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 455555555 5554433 1 233455555555555555555555555542 2334455555555555555555
Q ss_pred HHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 254 LELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 254 ~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
...|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+...+..+... ..
T Consensus 118 ~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 118 ISALRRCLELK-----PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------------
T ss_pred HHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------
Confidence 55555554211 2344555555555555555555555555555433 1111111111000 00
Q ss_pred CCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
... ....+..+.. +...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 178 ~~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 253 (368)
T 1fch_A 178 GAG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLL 253 (368)
T ss_dssp ---------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHH
Confidence 000 0001112233 338899999999999998753221 47888999999999999999999999998654 456789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------hhHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN-----------HAFY 479 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~ 479 (569)
|..+..++...|++++|+..|+++ ...| +..++..+...+...|++++|...++++.+..|.+ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999998 4344 67899999999999999999999999999988877 7899
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
..++.+|.+.|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998764
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=2.6e-16 Score=159.08 Aligned_cols=364 Identities=12% Similarity=-0.006 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTK----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA----CGFVTSA 191 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 191 (569)
.+++.++...+.| +...+..+...+.. .++++.|..+|+...+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 4566677666643 66677777777776 799999999999999875 56677788899988 8999999
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChHHHHHHHHHch
Q 038890 192 RMLFDEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKKR-NIFSWNSIITGFVQ----GGRAREALELFQEMQ 261 (569)
Q Consensus 192 ~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 261 (569)
...|++..+ .+...+..+...|.. .+++++|+..|++..+. +...+..|...|.. .+++++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999998866 467788888888888 88999999999987754 56678888888887 889999999999987
Q ss_pred hccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh----cCChHHHHHHHhh
Q 038890 262 SSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK----CGCVERAYGVFKE 333 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 333 (569)
.. .+...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 179 ----~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 179 ----EQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp ----HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ----HC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 43 367788888888887 899999999999998875 45677778888886 7899999999998
Q ss_pred CCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHHh
Q 038890 334 MPK-KDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS-----GLVEKGRWCFVMMRHV 403 (569)
Q Consensus 334 ~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 403 (569)
..+ .+...+..+...+.. .++.++|+.+|++..+.| +...+..+...+... +++++|...|+...+.
T Consensus 249 a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 765 467778888888888 899999999999998764 456667777777776 8999999999999853
Q ss_pred cCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCh
Q 038890 404 YLVEPHVYHYACMIDILSRAG---LFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+...+..+...|...| ++++|+++|++.-...+...+..+...+.. .+++++|...++++.+.+ ++
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 399 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LS 399 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CH
Confidence 35677888888888867 789999999988222578888899999988 899999999999999865 57
Q ss_pred hHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC
Q 038890 477 AFYVNLCDMYAK----AGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 477 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 508 (569)
.++..|+.+|.+ .+++++|..+|++..+.+..
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 889999999999 89999999999999988743
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.3e-16 Score=161.19 Aligned_cols=365 Identities=9% Similarity=-0.021 Sum_probs=265.7
Q ss_pred CcccHHHHHHHHhc----CCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHh
Q 038890 95 DLYTYNIMIRANAC----KSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK----RLDGLVGASVYGQVVKF 166 (569)
Q Consensus 95 ~~~~~~~li~~~~~----~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 166 (569)
+...+..+...|.. .+++. +|++.|++..+.| +...+..|...+.. .+++++|..+|+...+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~------~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLT------QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHH------HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHH------HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44555555555544 34444 7777777776653 44455555555655 67777777777777665
Q ss_pred CCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhH
Q 038890 167 GVCDDVFVQNSVISLFMA----CGFVTSARMLFDEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKK-RNIFS 236 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~ 236 (569)
| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|+..|++..+ .+...
T Consensus 109 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a 185 (490)
T 2xm6_A 109 G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS 185 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5 44555566666666 6677777777776654 345566666666766 6778888888777654 45667
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcc
Q 038890 237 WNSIITGFVQ----GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 237 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
+..+...|.. .+++++|...|++.. .. .+...+..+...+.. .+++++|..++++..+.+ +.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~----~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSA----TS---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHH----HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 7777777777 788888888888876 32 345666667776664 778888888888887764 34
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHhhCCCC-ChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHH
Q 038890 309 VIGTALVDMYGK----CGCVERAYGVFKEMPKK-DTLAWTAMISVFALN-----GYGKEAFDTFREMEAEGVRPNHVTFV 378 (569)
Q Consensus 309 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 378 (569)
..+..+...|.. .+++++|...|+...+. +...+..+...|... ++.++|+.+|++..+.| +...+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 556667777777 78899999999887653 667777888888877 89999999999998865 456666
Q ss_pred HHHHHHHccC---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038890 379 GLLSACAHSG---LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSMPMEPDVFVWGALLGG 451 (569)
Q Consensus 379 ~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 451 (569)
.+...+...| ++++|..+|+...+. .++..+..+...|.. .+++++|..+|++.-...+...+..+...
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777776656 789999999998853 467788889999988 89999999999988222367788888888
Q ss_pred HHh----cCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHHH
Q 038890 452 CQM----HGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYAK 488 (569)
Q Consensus 452 ~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 488 (569)
|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 888 89999999999999998854 77777777766554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.6e-18 Score=160.94 Aligned_cols=281 Identities=11% Similarity=-0.002 Sum_probs=165.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 334444455555555555555555555433 1223334444444444555555554444432 1233444444444
Q ss_pred HhCC-ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCC
Q 038890 245 VQGG-RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGC 323 (569)
Q Consensus 245 ~~~g-~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (569)
...| ++++|...|++ +.+.. +.+...+..+...+...|+
T Consensus 101 ~~~~~~~~~A~~~~~~---------------------------------------a~~~~-~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 101 LMVGHKNEHARRYLSK---------------------------------------ATTLE-KTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHSCSCHHHHHHHHHH---------------------------------------HHTTC-TTCTHHHHHHHHHHHHHTC
T ss_pred HHhhhhHHHHHHHHHH---------------------------------------HHHhC-CccHHHHHHHHHHHHHccC
Confidence 4444 44444444444 44332 2233444444455555555
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
+++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5555555544332 223445556666666677777777777666542 224566666777777777777777777776
Q ss_pred HHhcC-------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 401 RHVYL-------VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 401 ~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
.+... .+....++..+..++...|++++|...+++. ...| +...+..+...+...|++++|.+.++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 64321 1233567778888888888888888888877 3233 5667888888888888888888888888888
Q ss_pred CCCChhHHHHHHHHH-HHcCCh
Q 038890 472 DPLNHAFYVNLCDMY-AKAGRF 492 (569)
Q Consensus 472 ~p~~~~~~~~l~~~~-~~~g~~ 492 (569)
.|.++.++..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 888888888888877 445553
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-17 Score=159.55 Aligned_cols=265 Identities=11% Similarity=0.017 Sum_probs=226.2
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 355667778888888899999999999987422 3345566667788889999999999999998875 5677888
Q ss_pred HHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038890 312 TALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS 387 (569)
Q Consensus 312 ~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 387 (569)
..+...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 99999999999 99999999998764 356789999999999999999999999998853 22456777788999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcC
Q 038890 388 GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----------EPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~ 456 (569)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++ .. +.+..++..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999998544 566789999999999999999999999887 11 334678999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999987653
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.5e-17 Score=156.71 Aligned_cols=355 Identities=12% Similarity=0.068 Sum_probs=166.4
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCC
Q 038890 31 LRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKS 110 (569)
Q Consensus 31 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 110 (569)
+-.++..+|++++|.+.++.+ +++ .++..|+.++.+. |++++|.+.|.+. +|...|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~---~vWs~La~A~l~~--g~~~eAIdsfika--~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEP---AVWSQLAKAQLQK--GMVKEAIDSYIKA--DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CCh---HHHHHHHHHHHHc--CCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence 445666788899999888888 234 5788999999999 9999999999664 56778888898888888
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS 190 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 190 (569)
+++ +|+..++..++. .+++.+.+.++.++.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 76 ~~E------eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 76 NWE------ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred CHH------HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 888 999977777663 4667888889999999999988887774 3666789999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCC
Q 038890 191 ARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVK 270 (569)
Q Consensus 191 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 270 (569)
|...|..+ ..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ .
T Consensus 141 A~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~ 204 (449)
T 1b89_A 141 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI---------V 204 (449)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT---------T
T ss_pred HHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH---------H
Confidence 99999977 478899999999999999999999883 7888999999999999999995544433 2
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc--CChHHHHHHHhhCCC--------CChh
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC--GCVERAYGVFKEMPK--------KDTL 340 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~ 340 (569)
.++.-...++..|.+.|.++++..+++...... +-...+|+.|.-+|++- ++..+.++.|..-.. .+..
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 333345568888999999999999998887655 55667777777777754 456666666654433 2466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...|...++++.|..+ |.+. +|+...-..+.....+..+.+--.+...-.... .| ...+-|+.++
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l 353 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVL 353 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHH
Confidence 788888889999999988774 3432 334333333344444555555443333333322 23 3466677777
Q ss_pred HHcCCHHHHHHHHHhCCCCC
Q 038890 421 SRAGLFSEAERLIRSMPMEP 440 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~~p 440 (569)
...=++.++..+|+..+.-|
T Consensus 354 ~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 354 SPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp GGGCCHHHHHHHHHHTTCTT
T ss_pred HhccCcHHHHHHHHHcCCcH
Confidence 76777777777777774333
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2e-16 Score=147.51 Aligned_cols=271 Identities=10% Similarity=0.015 Sum_probs=215.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 211 IGYLRSGDLDVALDLFRRMKKRNI----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
+-....|++..|+..++.....+. .....+.++|...|+++.|+..++.. .+|+..++..+...+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--------~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--------SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--------SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--------CChhHHHHHHHHHHHcCC
Confidence 344567888888888887665332 24456778899999999888755432 357788888888899999
Q ss_pred CCHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGL-DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
++.++|.+.++++...+. |.+...+..+..++...|++++|.+.|++ ..+...+..++..+.+.|++++|+..|+++
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999888764 44566777788999999999999999998 567888999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 038890 366 EAEGVRPNHVTF---VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP- 440 (569)
Q Consensus 366 ~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 440 (569)
.+. .|+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|+..|+++ ...|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 885 3554311 223344456699999999999999764 678899999999999999999999999998 4445
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 441 DVFVWGALLGGCQMHGNVEL-GEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+..++..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 67789999999999999875 67999999999999986543 455566666665433
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=4.3e-16 Score=159.15 Aligned_cols=408 Identities=10% Similarity=0.002 Sum_probs=279.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCc-ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKR--SDL-YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 140 (569)
..+..++.. ... |+++.|..+|+++.. |+. ..|...+..+.+.|+++ +|..+|++++.. .|+...|
T Consensus 14 ~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~------~a~~~~~ral~~--~p~~~lw 82 (530)
T 2ooe_A 14 DAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYD------KVEKLFQRCLMK--VLHIDLW 82 (530)
T ss_dssp HHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH------HHHHHHHHHTTT--CCCHHHH
T ss_pred HHHHHHHHH-HHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhc--CCChHHH
Confidence 677777774 666 889999999988875 443 35778888888888888 999999998874 3776666
Q ss_pred HHHHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-cHhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh
Q 038890 141 PFLLKEC-TKRLDGLVGAS----VYGQVVKF-GVCD-DVFVQNSVISLFMA---------CGFVTSARMLFDEMSN-RDV 203 (569)
Q Consensus 141 ~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~ 203 (569)
..++... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++..+ |+.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 6666433 34577776655 66666553 5433 45677777766554 5778888888887765 322
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhc--cccC---CCCcc---
Q 038890 204 ---VSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSS--SVEE---MVKPD--- 272 (569)
Q Consensus 204 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~---~~~p~--- 272 (569)
..|..........|. ..+..++. .+.+++..|..++...... ++.. .++|+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 122222211100110 11111111 1234456666666542100 0011 13444
Q ss_pred -----HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHhCCCCcchhHHHHHHHHHh-------cCChH-------
Q 038890 273 -----KITIASVLSACAYL----GAI----DHGKWVHGYLRRSGLDCDVVIGTALVDMYGK-------CGCVE------- 325 (569)
Q Consensus 273 -----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------- 325 (569)
...|...+...... ++. ..+..+|+++.... +.+..+|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444332221 232 46778888888764 6677888888888876 79987
Q ss_pred HHHHHHhhCCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 326 RAYGVFKEMPK---K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 326 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+|..+|++..+ | +...|..++..+...|++++|..+|+++.+. .|+. ..|..++..+.+.|+++.|..+|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999998764 3 5778999999999999999999999999984 5543 4788888888889999999999999
Q ss_pred hHHhcCCCCCHhHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 400 MRHVYLVEPHVYHYACMIDI-LSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..+.. +.+...|...+.. +...|+.++|..+|+.. ...| +...|..++..+...|+.++|..+|+++....|.++
T Consensus 382 Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 98532 2233333332222 34689999999999988 3344 578899999999999999999999999999877655
Q ss_pred h----HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 A----FYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
. .|...+....+.|+.+.+..+.+++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 7888888888999999999999988654
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.1e-17 Score=159.10 Aligned_cols=217 Identities=11% Similarity=0.081 Sum_probs=76.9
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
|++++|.++++++..| ..|..+..++.+.|++. +|++.|.+. +|..+|..++.++...|++++|..
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~------eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVK------EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHH------HHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 8899999999999655 59999999999999999 999999653 677899999999999999999999
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH
Q 038890 159 VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWN 238 (569)
Q Consensus 159 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 238 (569)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ----------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 88877774 3457788899999999999999888775 377779999999999999999999999987 4788
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 9999999999999999999886 2578888888888888888888443322 112222233445555
Q ss_pred HhcCChHHHHHHHhhC
Q 038890 319 GKCGCVERAYGVFKEM 334 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~ 334 (569)
.+.|++++|..+++..
T Consensus 218 ek~G~~eEai~lLe~a 233 (449)
T 1b89_A 218 QDRGYFEELITMLEAA 233 (449)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555443
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2e-15 Score=159.90 Aligned_cols=377 Identities=11% Similarity=0.089 Sum_probs=288.5
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCC-CC-----CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIK-RS-----DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 137 (569)
.-....++.|... |.+.+|.++++++. .+ +....+.++.+..+. +.. +..+..++.-..
T Consensus 986 eeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~------Rv~eyI~kLd~~------ 1050 (1630)
T 1xi4_A 986 EEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT------RVMEYINRLDNY------ 1050 (1630)
T ss_pred HHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh------hHHHHHHHhhhc------
Confidence 5567778888888 99999999999877 22 335667777777766 445 666666655421
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG 217 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (569)
...-+...+...|.+++|..+|++.. ......+.+ +-..|++++|.++.+++. +..+|..+..++...|
T Consensus 1051 -d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 -DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred -cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13346677888999999999998862 122222323 227889999999998773 4678889999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHG 297 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 297 (569)
++++|+..|.+. .|...|..++.++.+.|++++|.+.|.... ... +++...+.++.+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr----k~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR----KKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999775 567778889999999999999999999876 322 33333345888999999888644443
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTF 377 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 377 (569)
+ .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|++.+++. .+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 2 345566777999999999999999999985 48999999999999999999999876 366889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh-
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQM- 454 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~- 454 (569)
..+-.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.. +..|. ...|..+...+++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 999999999999999987665433 45677889999999999999999999877 65553 3456556666554
Q ss_pred -cCCHHHHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHH
Q 038890 455 -HGNVELGEKVAQYLIDLDP-----LNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 455 -~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
.++..++.+.|..-....| .+...|..+...|.+.|+++.|...
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456666676665555544 5677899999999999999999953
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=8.6e-18 Score=163.23 Aligned_cols=257 Identities=10% Similarity=-0.092 Sum_probs=172.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD 316 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (569)
+..+...+.+.|++++|...|+++... .+.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ-----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 444444444555555555555544321 12234444444455555555555555555544443 333444455555
Q ss_pred HHHhcCChHHHHHHHhhCCCC-------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPKK-------------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PNHVTFVGLLS 382 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~ 382 (569)
+|...|++++|...|+++.+. ....+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 555555555555555544321 1223344577788889999999999999875322 15778889999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
.+...|++++|...|+.+.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998654 567889999999999999999999999988 4445 57889999999999999999
Q ss_pred HHHHHHHHhhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 461 GEKVAQYLIDLDPL------------NHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 461 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
|...++++.+..|. +..+|..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987765 367899999999999999998887664
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=4.4e-15 Score=157.41 Aligned_cols=416 Identities=12% Similarity=0.056 Sum_probs=302.4
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
..-......|...|.+.+|.++++.+.-. ..+-..+..+.+.|+....+. +.....+.......-+ ..-+...
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 33456777788999999999999999944 231122337777777777775 3344444444443222 3446677
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECT-KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA 184 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 184 (569)
+...|.++ +|..+|++.. .+...+..+. ..+++++|.++.++. -+..+|..+..++.+
T Consensus 1059 ai~lglyE------EAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1059 AISNELFE------EAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHhCCCHH------HHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 78888888 9999999962 1222223333 678899999988755 256788899999999
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchh
Q 038890 185 CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQS 262 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 262 (569)
.|++++|...|.+. .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|.+.+++++..... .
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~- 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---N- 1191 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---h-
Confidence 99999999999764 6777888899999999999999999987653 33334456999999999988544332 1
Q ss_pred ccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHH
Q 038890 263 SSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAW 342 (569)
Q Consensus 263 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 342 (569)
.++...+..+...|...|++++|..+|..+ ..|..+...|.+.|+++.|.+.+++. .+..+|
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 356667778999999999999999999885 37889999999999999999999987 566889
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +.....|+-+..+|.+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHh
Confidence 9899999999998888876654 33356667788889999999999999998776322 3445567667777665
Q ss_pred c--CCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------cCCCChhHHHH
Q 038890 423 A--GLFSEAERLIRSM-PMEP------DVFVWGALLGGCQMHGNVELGEKVAQYLID------------LDPLNHAFYVN 481 (569)
Q Consensus 423 ~--g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~ 481 (569)
. ++..++.++|..- .++| +...|..++..|.+.|+++.|....-.-.. ..+.++..|..
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk 1406 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 1406 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH
Confidence 4 3444555555443 4433 456788888899999999988732222111 13556777777
Q ss_pred HHHHHHHcC---------------ChHHHHHHHH
Q 038890 482 LCDMYAKAG---------------RFDDVKKTRN 500 (569)
Q Consensus 482 l~~~~~~~g---------------~~~~A~~~~~ 500 (569)
.+..|...+ +++.+.++++
T Consensus 1407 ai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1407 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777766665 6666666665
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.4e-16 Score=158.37 Aligned_cols=414 Identities=10% Similarity=0.030 Sum_probs=283.2
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccH
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTY 99 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 99 (569)
|.+......++.. ...|++++|+.+|+.+++.. |.++ .++..++..+.+. |+++.|..+|++... |++..|
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~---~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p~~~lw 82 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSG---RFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVLHIDLW 82 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCH---HHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCH---HHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCChHHH
Confidence 4455566677774 67899999999999999863 3344 7899999999999 999999999999874 677777
Q ss_pred HHHHHHH-hcCCCCCCCCChhHHHH----HHHHHHHC-CCCCC-cccHHHHHHHHHc---------cCCcHHHHHHHHHH
Q 038890 100 NIMIRAN-ACKSSETNDTHSGKCLK----LYKQMLCT-GISPD-CLTFPFLLKECTK---------RLDGLVGASVYGQV 163 (569)
Q Consensus 100 ~~li~~~-~~~~~~~~~~~~~~A~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 163 (569)
...+... ...|+.. .|.+ +|++.+.. |..|+ ...|...+..... .|+++.|..+|++.
T Consensus 83 ~~~~~~~~~~~~~~~------~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 83 KCYLSYVRETKGKLP------SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp HHHHHHHHHHTTTST------THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchh------hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7777533 3457776 6655 78777653 55553 3456666665544 68899999999999
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------
Q 038890 164 VKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRR-------MK------ 230 (569)
Q Consensus 164 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------ 230 (569)
++.........|..........|. ..+..++.. +.++++.|..++.. +.
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 883211112344333322111111 111222111 12334444443332 11
Q ss_pred CCC--------hhHHHHHHHHHHhC----CCh----HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc-------cC
Q 038890 231 KRN--------IFSWNSIITGFVQG----GRA----REALELFQEMQSSSVEEMVKPDKITIASVLSACAY-------LG 287 (569)
Q Consensus 231 ~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~-------~~ 287 (569)
.|+ ...|...+...... ++. ..+..+|++.... .+.+...|......+.. .|
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhchhhhhcc
Confidence 111 13444444333322 232 3677788887632 24466777777777664 68
Q ss_pred CHH-------HHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHHcCChh
Q 038890 288 AID-------HGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DT-LAWTAMISVFALNGYGK 356 (569)
Q Consensus 288 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~ 356 (569)
+++ +|..++++..+.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 8888888887632355677888888889999999999999987653 2 32 47888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 357 EAFDTFREMEAEGVRPNHVTFVGLLSA-CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 357 ~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+|..+|++..+.. +.+...+...... +...|+.++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999998752 2223333332222 335899999999999998665 45688999999999999999999999998
Q ss_pred C----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 436 M----PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 436 ~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
. +..|+ ...|...+......|+.+.+..+++++.+..|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8 22332 458888888888999999999999999998874
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.2e-17 Score=157.28 Aligned_cols=253 Identities=11% Similarity=-0.025 Sum_probs=168.6
Q ss_pred hcCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 215 RSGDLDVALD-LFRRMKK--R-----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 215 ~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
..|++++|.. .|++... + +...+..+...+.+.|++++|...|+++.+. .+.+..++..+..++...
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHC
Confidence 3456666666 6654432 1 2334556666666666666666666666521 133455555556666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|++++|...++++.+.. +.+..++. .+...+...|++++|+..++++.
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALM-------------------------------ALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHH-------------------------------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666655543 33344444 44444555555555555555554
Q ss_pred HCCCCCCHHHHH---------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 367 AEGVRPNHVTFV---------------GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 367 ~~~~~p~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
..... +...+. ..+..+...|++++|...|+.+.+...-.++..++..+..++.+.|++++|+.
T Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 160 RYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp HTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 43211 111111 02333348899999999999998654221258899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 432 LIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 432 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.++++ ...| +..++..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99998 3344 67899999999999999999999999999999999999999999999999999999999999764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=7.9e-17 Score=153.63 Aligned_cols=271 Identities=11% Similarity=-0.043 Sum_probs=180.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS 281 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~ 281 (569)
.+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...|+++... .+.+..++..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCHHHHHHHHH
Confidence 344455555555555555555555432 23344555555555555555555555555421 1223444555555
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH-HH-HHHHcCChhHHH
Q 038890 282 ACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAM-IS-VFALNGYGKEAF 359 (569)
Q Consensus 282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~ 359 (569)
++...|++++|...++.+.+.. +.+...+..+.... ++......+ .. .+...|++++|+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 5555555555555555554432 11111111110000 000001111 22 256678899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++ ..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999988753 3367788889999999999999999999998554 456788999999999999999999999988 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------------NHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.| +..++..+...+...|++++|.+.++++.+..|. ++.++..++.++.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 6788999999999999999999999999999988 7889999999999999999999988754
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.8e-16 Score=145.58 Aligned_cols=247 Identities=10% Similarity=0.042 Sum_probs=203.4
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDK--ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
++-....|++..|+..++... . ..|+. .....+.++|...|+++.|...++. ..+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~----~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK----P--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC----C--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----c--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence 345677899999999998865 2 23443 4556778999999999999876644 2467788889999999
Q ss_pred HhcCChHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038890 319 GKCGCVERAYGVFKEMP----KK-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 393 (569)
...|+.++|.+.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999863 23 566778888999999999999999987 45678888999999999999999
Q ss_pred HHHHHHhHHhcCCCCCHhHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHY---ACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
...|+.+.+.. |+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|+..++++
T Consensus 150 ~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998643 543211 22334445568999999999999 33457889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHCC
Q 038890 469 IDLDPLNHAFYVNLCDMYAKAGRFDD-VKKTRNLMKERG 506 (569)
Q Consensus 469 ~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 506 (569)
.+.+|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999976 578999987744
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.1e-16 Score=155.28 Aligned_cols=354 Identities=7% Similarity=-0.045 Sum_probs=242.4
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHh-----C---CCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKF-----G---VCDDVFVQNSVISLFMACGFVTSARMLFDEMSN------- 200 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 200 (569)
....|+.+...+...|++++|++.|++.++. + ......+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888999999999999999988763 1 122356788999999999999999998887643
Q ss_pred ----CChhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCCChHHHHHHHHHchhccccCC
Q 038890 201 ----RDVVSWNAMIIGYLR--SGDLDVALDLFRRMKK--R-NIFSWNSIITG---FVQGGRAREALELFQEMQSSSVEEM 268 (569)
Q Consensus 201 ----~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~ 268 (569)
....++..+..++.. .+++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 123456666555554 4579999999998764 4 34455554444 456788889999998876321
Q ss_pred CCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhH
Q 038890 269 VKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLA 341 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 341 (569)
+.+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...|++..+ .+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 3455566555555443 467788999999988875 66677888999999999999999999998754 34556
Q ss_pred HHHHHHHHHHc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 342 WTAMISVFALN-------------------GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 342 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
+..+...|... +..+.|+..+++..+.. +.+..++..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 23567788888777643 22455777888899999999999999998874
Q ss_pred hcCCCCCHh----HHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 403 VYLVEPHVY----HYACMID-ILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 403 ~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.. |+.. .+..+.. .+...|++++|+..|++. .+.|+...... ....+.+++++..+.+|.++
T Consensus 363 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CT
T ss_pred cC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCH
Confidence 32 3322 2333333 234678999999999887 66666443222 23455677888888999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.++..|+.+|...|++++|.+.|++..+.|-.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp THHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999886643
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=8.2e-17 Score=156.30 Aligned_cols=232 Identities=10% Similarity=-0.027 Sum_probs=196.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHH
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISV 348 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 348 (569)
+...+..+...+.+.|++++|..+++++.+.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888899999999999999999999876 66788999999999999999999999998764 467889999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNH-----------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+...|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 2332 2233457788999999999999999996552222688999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
..|...|++++|+..|+++ ...| +..+|..+..++...|++++|+..++++.+..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 3334 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 038890 496 KKTRNLMKERG 506 (569)
Q Consensus 496 ~~~~~~m~~~g 506 (569)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.5e-15 Score=144.77 Aligned_cols=270 Identities=10% Similarity=0.032 Sum_probs=174.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 334556778889999999999999999865 4667888999999999999999999998864 3567888999999
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHH--HHHhcC
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD--MYGKCG 322 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g 322 (569)
...|++++|...++++.... +.+...+..+... .++......+.. .+...|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-----TTTTTC------------------------------------------CCTTSHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcc
Confidence 99999999999999987421 1122222222000 000001111111 133444
Q ss_pred ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
++++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555554444322 234455556666666666666666666665542 22455666666777777777777777777
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-------------DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
+.+.. +.+...+..+..++...|++++|...++++ ...| +..+|..+..++...|++++|..++
T Consensus 232 a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66433 345666777777777777777777777766 2222 2556777777777778887777777
Q ss_pred HHHhh
Q 038890 466 QYLID 470 (569)
Q Consensus 466 ~~~~~ 470 (569)
+++.+
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 66554
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.4e-15 Score=134.26 Aligned_cols=219 Identities=9% Similarity=-0.047 Sum_probs=161.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC------C----hhHHHH
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK------D----TLAWTA 344 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~ 344 (569)
.+..+...+...|++++|...++++.+.. .+..++..+..+|...|++++|...|++..+. + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555544 44455555555555555555555555554321 1 456777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
+...+...|++++|+..|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 788888888888888888888774 3443 34556678899999998887532 345677888999999999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 425 LFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
++++|...++++ .. +.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 33 3367888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHCC
Q 038890 503 KERG 506 (569)
Q Consensus 503 ~~~g 506 (569)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7643
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=7e-15 Score=130.87 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=151.0
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777788888888888888877654 356677888888888888888888888888753 22456777788
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 382 SACAHS-----------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 382 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
.++... |++++|...+++..+.. +.+...+..+..++...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 99999999999998654 456788999999999999999999999988 2127888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.++...|++++|+..++++.+.+|.++.++..++.++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988753
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.5e-14 Score=145.60 Aligned_cols=364 Identities=10% Similarity=-0.034 Sum_probs=229.1
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT-----G--ISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 167 (569)
...||.+...+...|+++ +|++.|++..+. + ..| ...+|..+...+...|++++|...+++.++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~------eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNE------AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 445677766777777776 777777665431 1 123 33578888889999999999999999887641
Q ss_pred -----C-C-CcHhHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-ChhHHHHHHHH---HHhcCCHHHHHHHHHhcCC-
Q 038890 168 -----V-C-DDVFVQNSVISLFMAC--GFVTSARMLFDEMSN--R-DVVSWNAMIIG---YLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 168 -----~-~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~- 231 (569)
. . ....++.....++.+. +++++|...|++..+ | +...+..+... +...++.++|++.|++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 1 1245666565566554 468999999998865 4 34455555444 3456777888888887653
Q ss_pred --CChhHHHHHHHHHHh----CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 038890 232 --RNIFSWNSIITGFVQ----GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 232 --~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (569)
.+...+..+...+.. .|++++|.+.+++.... .+.+...+..+...+...|++++|...++++.+.. |
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 345556655555544 46788999999988632 24567788889999999999999999999998875 5
Q ss_pred CcchhHHHHHHHHHhc-------------------CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKC-------------------GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
.+..++..+..+|... +.++.|...|+...+ .+..++..+...+...|++++|+..|+
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 5566677666665432 235667777766542 356778899999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038890 364 EMEAEGVRPNHV--TFVGLLS-ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME 439 (569)
Q Consensus 364 ~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 439 (569)
+..+....|... .+..+.. .....|++++|+..|++..+. .|+....... ...+..+++.. ...
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHC
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhC
Confidence 998864433321 2222222 245789999999999998853 4543322222 22333344433 223
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 440 -PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 440 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.+..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 36678999999999999999999999999999998887766554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.1e-14 Score=133.59 Aligned_cols=236 Identities=9% Similarity=-0.048 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--Cc----c
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD--CD----V 308 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~ 308 (569)
..+..+...+...|++++|...|++.. ... .+...+..+..++...|++++|...++.+.+.... ++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAW----ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH----Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 345566666667777777777777665 322 55566666666677777777777776666653211 11 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
.++..+...|...|++++|...|+++...+.. ...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 56666777777777777777777665432111 234556678888888888887742 223457777888888999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++++|...++.+.+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988654 456788889999999999999999999888 3334 57788899999999999999999999
Q ss_pred HHhhcC------CCChhHHHHHHH
Q 038890 467 YLIDLD------PLNHAFYVNLCD 484 (569)
Q Consensus 467 ~~~~~~------p~~~~~~~~l~~ 484 (569)
++.+.. |.+..++..+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 999988 777776666554
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2e-14 Score=133.17 Aligned_cols=244 Identities=8% Similarity=-0.080 Sum_probs=181.2
Q ss_pred hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 246 QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
..|++++|+..|+++.+.. ....+.+..++..+..++...|++++|...++++.+.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4567788888888876311 00112245667777778888888888888888887765 456777888888888888888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
+|...|+++.+ .+...+..+...+...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887653 35678888888999999999999999998874 45554444455556677999999999988775
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.. +++...+ .++..+...++.++|...+++. ...|+ ..++..+...+...|++++|...++++.+..|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 44 3444444 4677777888889999999887 33332 57888899999999999999999999999999875
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 444 66788889999988776
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=6.2e-14 Score=129.69 Aligned_cols=249 Identities=9% Similarity=-0.037 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS 281 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~ 281 (569)
.+......+...|++++|+..|+++.+ | +...+..+..+|...|++++|+..+++.... ..........|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHHH
Confidence 344455556666666666666666542 2 3345566666666666666666666666521 0111111233555555
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHH
Q 038890 282 ACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------------- 135 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-------------------------- 135 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC--------------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh--------------------------
Confidence 5666666666666666655543 3334445555555555555555555555444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC--
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL---FSEAERLIRSM-- 436 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 436 (569)
+. .+.+...+..+...+...+++++|...|+.+.+.. +.+...+..+..++...|+ +++|...++++
T Consensus 136 -----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 136 -----RP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp -----CS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred -----hc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 32 11122333333312222335555555555555332 2234444455555555554 44444444444
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 437 --PMEPD------VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 437 --~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
...|+ ..+|..+...+...|++++|.+.++++.+.+|.++.+...+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888888999999999999999999999888877766554443
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=152.94 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEA---EGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
.+|+++|.+|++.|++++|.++|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|. ..|+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHHH
Confidence 4566666666666666666666665542 3566667777777777777777777777776666 55666677777777
Q ss_pred HHHHHHcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038890 417 IDILSRAGL-FSEAERLIRSM---PMEPDVFVWGALLGGC 452 (569)
Q Consensus 417 ~~~~~~~g~-~~~A~~~~~~~---~~~p~~~~~~~l~~~~ 452 (569)
|.++++.|+ .++|.++|++| |+.||..+|++++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 776666665 35666666666 6666766666666543
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=157.25 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHH
Q 038890 204 VSWNAMIIGYLRSGDLDVALDLFRRMK-------KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276 (569)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~ 276 (569)
.|||++|++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|. ..|+.||..||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~PDvvTY 203 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCcHHHH
Confidence 478888888888888888888886653 4899999999999999999999999999999 88889999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHH
Q 038890 277 ASVLSACAYLGA-IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 277 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
+++|.++++.|+ .+.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999987 478889999999999999999999888777665444444333
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=4.8e-13 Score=133.01 Aligned_cols=343 Identities=11% Similarity=0.023 Sum_probs=200.3
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCh---hHHHHHhhcCCCCCcccHHHHHHH
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL---SYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
..++..+...|++++|...|+...+.+ ++ ..+..|..+|... |+. ++|.+.|++..+.++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~---~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YS---EAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CC---TGGGTCC------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CH---HHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 357778888899999999999998875 33 3445566666666 888 899999998876677778777775
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG---LVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
+...+.. ..++.++|+..|++..+.| +...+..|...+...+.. ..+...+......|. ......+...|
T Consensus 79 ~~~~~~~-~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGA-TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLY 151 (452)
T ss_dssp HHTC--C-CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHH
T ss_pred HHhCCCC-CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 5555521 1123338999999998865 233666676666654432 345556666655553 34566677777
Q ss_pred HhcCC----HHHHHHHHhhcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHhC----C
Q 038890 183 MACGF----VTSARMLFDEMSNRDVVSWNAMIIGYLRSG---DLDVALDLFRRMKK---RNIFSWNSIITGFVQG----G 248 (569)
Q Consensus 183 ~~~g~----~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----g 248 (569)
...+. .+.+..+++.....+...+..+...|...| +.++|+..|++..+ ++...+..|...|... +
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 77774 445555566666666667777777887788 77788888777653 2333335566666444 5
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC---
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSA-C--AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--- 322 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 322 (569)
++++|...|++.. +-+...+..+... + ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 232 d~~~A~~~~~~aa--------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 232 DEKTAQALLEKIA--------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp CHHHHHHHHHHHG--------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 7778888887763 2344455555554 3 45777888888888777665 4555566666665 44
Q ss_pred --ChHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHH
Q 038890 323 --CVERAYGVFKEMPKKDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEK 392 (569)
Q Consensus 323 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 392 (569)
++++|...|++....++..+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++
T Consensus 300 ~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 300 PADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp CCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 77777777777663355566666655554 2366777777777666542 2233334444432 346666
Q ss_pred HHHHHHHhH
Q 038890 393 GRWCFVMMR 401 (569)
Q Consensus 393 a~~~~~~~~ 401 (569)
|..+|+...
T Consensus 377 A~~~~~~A~ 385 (452)
T 3e4b_A 377 AYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=4.6e-14 Score=140.39 Aligned_cols=376 Identities=9% Similarity=-0.050 Sum_probs=229.1
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG---LVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
+...+.+.|++. +|++.|++..+.| +...+..+...+...|+. ++|..+|+...+. +...+..+
T Consensus 9 la~~~~~~g~~~------~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTV------TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHhCCCHH------HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 344455566666 7888887777654 333444444445556666 7777777777654 33444455
Q ss_pred HHHHHhcC-----CHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCHHH---HHHHHHhcCC-CChhHHHHHHHHHHhCC
Q 038890 179 ISLFMACG-----FVTSARMLFDEMSN-RDVVSWNAMIIGYLRSGDLDV---ALDLFRRMKK-RNIFSWNSIITGFVQGG 248 (569)
Q Consensus 179 ~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g 248 (569)
..++...| ++++|...|++..+ .+...+..|...|...+..+. +.+.+....+ .+...+..+...|...+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55444444 66777777777655 344566667777766554433 3333333332 35566777777787777
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc----
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG---AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC---- 321 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 321 (569)
.++++........+.. . ..++..+..+...|...| +.++|...|+...+.| +++...+..|...|...
T Consensus 156 ~~~~~~~~a~~~~~~a-~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA-L---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHH-T---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHH-H---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 5554444433322110 1 222237777777787788 8888888888888877 45555556677777655
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----CHHHH
Q 038890 322 GCVERAYGVFKEMPKKDTLAWTAMISV-F--ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG-----LVEKG 393 (569)
Q Consensus 322 g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a 393 (569)
+++++|...|+.....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|
T Consensus 231 ~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 231 PDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp CCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 689999999988773366777777776 3 45789999999999998876 5666667776666 45 99999
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVA 465 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 465 (569)
..+|+... +-++..+..|...|.. ..++++|..+|++.-..-+......|...|.. ..|.++|...+
T Consensus 307 ~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 307 EAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 99998877 3466777788877766 34899999999988212234455566666653 45899999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+++.+.+++........+......++.++|..+.++...
T Consensus 382 ~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999998865443333333223334567778887776644
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=6.7e-13 Score=121.12 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3333344444444444444444444332 22233333334444444444444444333221 1233344444444455
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
|++++|+..++++...+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555444222232 2344444455555555555555555554322 2234445555555555555555555
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 432 LIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 432 ~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.++++ ... .+...+..+...+...|++++|.+.++++.+..|.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 55554 222 233444455555555555555555555555555554443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=2.2e-12 Score=119.33 Aligned_cols=222 Identities=7% Similarity=-0.125 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK----CGCVERAYGVFKEMPK-KDTLAWTAMISV 348 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 348 (569)
.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .+...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444445555555555544442 123344444555555 5555555555554432 244555556666
Q ss_pred HHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 349 FAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 349 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+ . .+...+..+...|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-L---NDGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-c---CcHHHHHHHHHHH
Confidence 666 677777777777766653 55666666666666 7777777777777764 2 2455666677777
Q ss_pred HH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH----
Q 038890 421 SR----AGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK---- 488 (569)
Q Consensus 421 ~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 488 (569)
.. .+++++|+..|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 76 77777777777766111345666777777777 7788888888888777765 5667777778877
Q ss_pred cCChHHHHHHHHHHHHCCC
Q 038890 489 AGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~ 507 (569)
.+++++|.+++++..+.|.
T Consensus 235 ~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 7888888888887777653
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=4.3e-13 Score=129.23 Aligned_cols=247 Identities=8% Similarity=0.027 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCcchhHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA-IDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
...|+.+...+.+.|++++|+..|++++... +-+...|..+..++...|+ +++|...++++.+.. +.+..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3457777777888888888888888876321 3456777777788888886 888888888888775 55677888
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH-SG 388 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~ 388 (569)
.+..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887753 4677888888888889999999999999888532 256778888888887 56
Q ss_pred CHHHH-----HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 038890 389 LVEKG-----RWCFVMMRHVYLVEPHVYHYACMIDILSRAG--LFSEAERLIRSMPMEP-DVFVWGALLGGCQMHG---- 456 (569)
Q Consensus 389 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~---- 456 (569)
..++| +..++...+.. +-+...|..+..++...| ++++|++.+.++...| +...+..++..+.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 54666 47788877544 456778888888888888 6888998888874444 5678888888888764
Q ss_pred ----C-HHHHHHHHHHH-hhcCCCChhHHHHHHHHHHHc
Q 038890 457 ----N-VELGEKVAQYL-IDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 457 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999888766543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.3e-12 Score=116.80 Aligned_cols=203 Identities=8% Similarity=-0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVF 349 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 349 (569)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.. .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444444555555555555555555554432 22333444444444444444444444433321 1233344444444
Q ss_pred HHc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHH
Q 038890 350 ALN-GYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFS 427 (569)
Q Consensus 350 ~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (569)
... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHH
Confidence 444 455555555554444212222 2334444444455555555555555444322 223444444444455555555
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 428 EAERLIRSM-PME--PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 428 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
+|...++++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 555544444 111 233334444444444555555555555544444444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.2e-13 Score=125.35 Aligned_cols=141 Identities=15% Similarity=0.007 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 334444444445555555555555544432 1233444445555555555555555555554322 2334445555555
Q ss_pred HHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+.+.|++++|+..++++ .. +.+..++..+...+...|++++|...++++.+..|.++.++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555544 11 123445555555555555555555555555555555554444443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.4e-13 Score=130.91 Aligned_cols=227 Identities=9% Similarity=-0.009 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGC-VERAYGVFKEMPK---KDTLAWTAMISV 348 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 348 (569)
...|..+..++...|++++|...++++.+.. +.+..+|..+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5667778888899999999999999999886 6678889999999999997 9999999998864 467899999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH-cCCHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR-AGLFS 427 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 427 (569)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998532 257789999999999999999999999999654 5578899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC--------
Q 038890 428 EA-----ERLIRSM-PMEP-DVFVWGALLGGCQMHG--NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG-------- 490 (569)
Q Consensus 428 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 490 (569)
+| ++.|++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777777 4455 5678888888888888 689999999998 889999999999999999975
Q ss_pred -ChHHHHHHHHHH-HH
Q 038890 491 -RFDDVKKTRNLM-KE 504 (569)
Q Consensus 491 -~~~~A~~~~~~m-~~ 504 (569)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 359999999998 55
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=6.2e-13 Score=122.88 Aligned_cols=227 Identities=7% Similarity=-0.096 Sum_probs=175.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHH
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KD----TLAWTAMISVF 349 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~ 349 (569)
+......+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++... ++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556667777777777777776654 34455677777777788888888777776644 22 23478888889
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 429 (569)
...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 2355788899999999999999999999998542 45677888888444456699999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC-----hhHHHHHHHHHHHcCChHHHH
Q 038890 430 ERLIRSM-PMEP-DVFVWGALLGGCQMHGN---VELGEKVAQYLIDLD---PLN-----HAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 430 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+..|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++..|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998 4445 46788888888888888 888999999998854 432 257888999999999999999
Q ss_pred HHHHHHHHCC
Q 038890 497 KTRNLMKERG 506 (569)
Q Consensus 497 ~~~~~m~~~g 506 (569)
+.+++..+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3e-12 Score=118.37 Aligned_cols=226 Identities=8% Similarity=-0.110 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcc
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
+..++..+...+...|++++|...|++.. . +.+...+..+...+.. .+++++|...+++..+.+ +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC----D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH----H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 44556667777777777777777777776 3 2344566666677777 777777777777777765 55
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 309 VIGTALVDMYGK----CGCVERAYGVFKEMPK-KDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 309 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666777777777 7888888888776654 356677788888888 899999999999988865 5666777
Q ss_pred HHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 380 LLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 380 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|+..|++. ... +...+..+..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~ 226 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 7777777 89999999999998853 356778889999999 99999999999987 333 3677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCCh
Q 038890 451 GCQM----HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 451 ~~~~----~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+.. .+++++|.+.++++.+.+|++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888 8999999999999999988754
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=7.7e-13 Score=120.72 Aligned_cols=197 Identities=11% Similarity=-0.081 Sum_probs=172.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56678888999999999999999998753 467789999999999999999999999998753 33677888899999
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
...|++++|...++.+.. .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 22234 5678889999999999999999999988 3334 678899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...++++.+..|.+...+..++..+.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=3.1e-13 Score=122.54 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=154.0
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556666677777777777777776643 356677888888889999999999999988753 3367788889999
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998654 557888999999999999999999999988 33 34678899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...++++.+..|.++.++..++.+|.+.|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.9e-13 Score=118.82 Aligned_cols=192 Identities=16% Similarity=0.027 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA 313 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (569)
...+..+...+.+.|++++|...|++..+. -+.+...+..+..++...|++++|...++++.+.. |.+...+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE-----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 344555555666666666666666665421 13345555555666666666666666666665553 334445555
Q ss_pred HHHHHHhc-----------CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 314 LVDMYGKC-----------GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 314 l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
+..++... |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 55555555 444444444444322 133344444444445555555555555544433 34444444
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+..++...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444555555555555555444322 23344444444444455555555444443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.4e-12 Score=116.63 Aligned_cols=200 Identities=12% Similarity=0.004 Sum_probs=173.5
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
+.+..++..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34566788899999999999999999997653 467789999999999999999999999998753 33677888899
Q ss_pred HHHHcc-CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 382 SACAHS-GLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 382 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
..+... |++++|...++.+.+ .+..| +...+..+..++...|++++|+..++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999985 32223 3678899999999999999999999988 3334 57889999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 458 VELGEKVAQYLIDLDP-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 899999999999999999999999999987643
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.3e-13 Score=132.63 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHH
Q 038890 204 VSWNAMIIGYLRSGDLDVALDLFRRMKK--R-N----IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKIT 275 (569)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~ 275 (569)
..+......+...|++++|...|+++.+ | + ...+..+...|...|++++|...+++........+..| ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445555666666677776666666542 2 1 23455666666666666666666666653211111111 1334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCC----C-CcchhHHHHHHHHHhcCC
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGL----D-CDVVIGTALVDMYGKCGC 323 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~ 323 (569)
+..+...+...|++++|...++++.+... + ....++..+...|...|+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 55555566666666666666665544210 0 012244455555555555
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2.3e-12 Score=111.27 Aligned_cols=166 Identities=12% Similarity=0.001 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45678888999999999999999999988753 2256788888899999999999999999988544 45677888888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
..+...++++.|...+.+. ...| +...+..+...+...|++++|++.++++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999888 3344 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 038890 496 KKTRNLMKERG 506 (569)
Q Consensus 496 ~~~~~~m~~~g 506 (569)
.+.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987743
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-13 Score=135.55 Aligned_cols=230 Identities=10% Similarity=-0.039 Sum_probs=140.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHh----C-CCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---------ChhH
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRS----G-LDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---------DTLA 341 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 341 (569)
+..+..++...|++++|...++++.+. + .+....++..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443321 0 0112233444445555555555555554443221 1234
Q ss_pred HHHHHHHHHHcCC-----------------hhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 342 WTAMISVFALNGY-----------------GKEAFDTFREMEAE----GVRP-NHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 342 ~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+..+...+...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555666666666 66666666655431 1111 124666777778888888888888887
Q ss_pred hHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 400 MRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PM---EP----DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 400 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
..+...-.++ ...+..+..+|...|++++|...+++. .. .. ...++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7643211111 236778888888889998888888776 11 11 145777888888899999999999998
Q ss_pred HhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 468 LIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 468 ~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+.+..+. ...++..++.+|.+.|++++|..++++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8875422 2457888999999999999999999887654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=4.1e-13 Score=128.11 Aligned_cols=262 Identities=14% Similarity=0.048 Sum_probs=165.5
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-Ccchh
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAIDHGKWVHGYLRRS----GLD-CDVVI 310 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 310 (569)
....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.+ ....+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555555555555555554211 111 234444555555555555555555544321 111 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHHHHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPK-----KD----TLAWTAMISVFALNGY--------------------GKEAFDT 361 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 361 (569)
+..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 45555566666666666665555432 11 2255566666666777 7777777
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHH
Q 038890 362 FREMEAE----GVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 362 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
+++.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665431 1111 1346677778888899999999998887643211111 24778888999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHH
Q 038890 433 IRSM----PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 433 ~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
+++. +..++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877 11122 457788888999999999999999999875432 245788899999999999999999
Q ss_pred HHHHHHCC
Q 038890 499 RNLMKERG 506 (569)
Q Consensus 499 ~~~m~~~g 506 (569)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99987643
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=5.8e-13 Score=130.88 Aligned_cols=297 Identities=11% Similarity=-0.025 Sum_probs=205.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----
Q 038890 169 CDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-D----VVSWNAMIIGYLRSGDLDVALDLFRRMKK-----R---- 232 (569)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---- 232 (569)
......+......+...|++++|...|++..+ | + ..+|..+...+...|++++|...+++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667788889999999999999998865 3 2 25688889999999999999999988642 1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccCC--------------------HHH
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLGA--------------------IDH 291 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~~--------------------~~~ 291 (569)
...++..+...|...|++++|...+++........+..+. ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2447888899999999999999999999843211111110 3467777788888888 777
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
|...+.+..+. +.....+ ...++..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 76666655432 1111110 12345555566666666666666666654321
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 038890 370 V-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM---- 436 (569)
Q Consensus 370 ~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 436 (569)
. .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236677777788888888888888776643211111 456778888889999999998888877
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChH
Q 038890 437 PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYAKAGRFD 493 (569)
Q Consensus 437 ~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 493 (569)
...++ ..++..+...+...|++++|.+.++++.+.. +....++..++..+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 4577888888999999999999999988753 223566778888888888763
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=3.9e-13 Score=134.52 Aligned_cols=208 Identities=9% Similarity=-0.069 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCCh-HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCV-ERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 33455666666666677777 777777666542 34667888888888899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc--------CCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHS---------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA--------GLFSE 428 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 428 (569)
.+. .|+...+..+..++... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57778888888899998 99999999999998654 55688899999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 429 AERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 429 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|+..|++. ...| +...|..+..++...|++++|.+.|+++.+.+|.++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998 4455 78899999999999999999999999999999999999999999999999999999755443
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=7.9e-11 Score=121.08 Aligned_cols=415 Identities=9% Similarity=-0.012 Sum_probs=278.9
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCC---CCCCC
Q 038890 43 ELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSS---ETNDT 116 (569)
Q Consensus 43 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~~~ 116 (569)
+....++..+... +.+. ..+..++..+.+. +.++.|..+|+.+.. .+...|...+..-.+.++ ..
T Consensus 50 d~i~~lE~~l~~n-p~d~---~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~--- 120 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDI---FLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA--- 120 (679)
T ss_dssp CHHHHHHHHHHHC-TTCH---HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH---
T ss_pred HHHHHHHHHHHHC-cCCH---HHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH---
Confidence 3344555555553 2344 7888888888888 888888888888763 355677777777777776 55
Q ss_pred ChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHccCCc--------HHHHHHHHHHHH-hCC-CC-cHhHHHHHHHHHH-
Q 038890 117 HSGKCLKLYKQMLCTG-ISPDCLTFPFLLKECTKRLDG--------LVGASVYGQVVK-FGV-CD-DVFVQNSVISLFM- 183 (569)
Q Consensus 117 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~- 183 (569)
.+..+|++.+... ..|+...|...+....+.++. +...++|+..+. .|. .+ +..+|...+....
T Consensus 121 ---~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 121 ---VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp ---HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 8888998888753 136777777777665554443 334467777665 355 44 3467777776543
Q ss_pred --------hcCCHHHHHHHHhhcCC-CCh---hHHHHHHHHHHh-------------cCCHHHHHHHHHhc-------CC
Q 038890 184 --------ACGFVTSARMLFDEMSN-RDV---VSWNAMIIGYLR-------------SGDLDVALDLFRRM-------KK 231 (569)
Q Consensus 184 --------~~g~~~~A~~~~~~~~~-~~~---~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~ 231 (569)
..++++.+..+|++... |.. .+|......-.. ..+++.|...+.++ .+
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 23456778888888776 321 223221111000 12233344444331 11
Q ss_pred --------------C--C------hhHHHHHHHHHHhCC-------ChHHHHHHHHHchhccccCCCCccHHHHHHHHHH
Q 038890 232 --------------R--N------IFSWNSIITGFVQGG-------RAREALELFQEMQSSSVEEMVKPDKITIASVLSA 282 (569)
Q Consensus 232 --------------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~ 282 (569)
| + ...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-----~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-----VCFAPEIWFNMANY 352 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 0 0 124555555433332 123456778887631 34567788888887
Q ss_pred HHccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC----------
Q 038890 283 CAYLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-------------KD---------- 338 (569)
Q Consensus 283 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~---------- 338 (569)
+...|+.+.|. .+|+..... +|.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 88889988996 999999875 356667778888899999999999999998764 21
Q ss_pred --hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 339 --TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS-GLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 339 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
...|...+....+.|+.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+...+.+ +.+...|..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHH
Confidence 2357777777778899999999999998751112233443333332333 55999999999999765 556777888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.++.....|+.+.|..+|++. ...| ....|...+.--...|+.+.+..+.+++.+..|+++.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999889999999999999998 3333 3457888888888999999999999999999998753
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=2.1e-12 Score=119.48 Aligned_cols=237 Identities=14% Similarity=0.025 Sum_probs=148.5
Q ss_pred ccCCcHHHHHHHHHHHHhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHH
Q 038890 149 KRLDGLVGASVYGQVVKFGVC---DDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 149 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 222 (569)
..|++++|...++.+++.... .+..++..+..++...|++++|...|++..+ .+..+|..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 345566666666666654321 1244555666666666666666666666543 2455666666666666677777
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 223 LDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 223 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
...|+++.+ .+...+..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+...
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666666553 34667888888888888888888888888732 344334444445556678888888888877
Q ss_pred HHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 300 RRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.... +++...+ .++..+...++.++|...+......+ ...|..+...+...|++++|...|++.... .|
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 7664 3444444 36667777778888888888776542 356667777777777777777777777764 34
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCF 397 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~ 397 (569)
+.. .....++...|++++|...+
T Consensus 247 ~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTC--HHHHHHHHHHHHHHHC----
T ss_pred hhH--HHHHHHHHHHHHHHhhHHHH
Confidence 221 12233445556666665544
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=1.6e-12 Score=128.14 Aligned_cols=267 Identities=13% Similarity=0.016 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h----hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHH
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--RD-V----VSWNAMIIGYLRSGDLDVALDLFRRMKKR---------NIFSW 237 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 237 (569)
.+..+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++..+. ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334455566667777777777666543 21 1 24555555555556666666555554320 12234
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
..+...|...|++++|...|++........+-. +....++..+...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch----------------------------------HHHHHHHHHHHHH
Confidence 445555555555555555555554211000000 1112334444455
Q ss_pred HHhcCC-----------------hHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-
Q 038890 318 YGKCGC-----------------VERAYGVFKEMPK-------K--DTLAWTAMISVFALNGYGKEAFDTFREMEAEGV- 370 (569)
Q Consensus 318 ~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 370 (569)
|...|+ +++|...+++..+ + ....+..+...+...|++++|+..+++..+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555555444321 1 123566677778888888888888877764211
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC------
Q 038890 371 RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----HVYHYACMIDILSRAGLFSEAERLIRSM------ 436 (569)
Q Consensus 371 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 436 (569)
.++ ...+..+..++...|++++|...+++......-.. ...++..+..+|...|++++|...+++.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 23677788888999999999999988764331111 1467788899999999999999999887
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 437 -PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 437 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
+..+ ...++..+...+...|++++|.+.++++.+..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1111 2347788889999999999999999999887654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=4e-12 Score=121.16 Aligned_cols=238 Identities=10% Similarity=-0.016 Sum_probs=139.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C----cchh
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVK-PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-C----DVVI 310 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~ 310 (569)
+..+...+...|++++|...+++........+.. ....++..+...+...|++++|...+++..+.... + ...+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 4444444555555555555554433110000001 11334444445555555555555555544332100 0 1224
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChhHHHHH
Q 038890 311 GTALVDMYGKCGC--------------------VERAYGVFKEMPK-----K----DTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 311 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
+..+...|...|+ +++|...+++... . ....+..+...+...|++++|+..
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555565 5666555554321 1 123566677777888888888888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHH
Q 038890 362 FREMEAEGV-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 362 ~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
+++..+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 877654210 011 236777778888889999999888877643211111 45677888899999999999999
Q ss_pred HHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 433 IRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 433 ~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
+++. +..+ ...++..+...+...|++++|...++++.+..+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8877 1111 1347778888899999999999999999887654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=4.6e-12 Score=123.55 Aligned_cols=224 Identities=8% Similarity=-0.096 Sum_probs=142.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHh----CCCC-cchhHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRS----GLDC-DVVIGTALVDMYGKCGCVERAYGVFKEMPK-----K-----DTLAWTAM 345 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 345 (569)
..+...|++++|...++++.+. +.++ ...++..+...|...|+++.|...+.+..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666555442 1111 234455556666666666666655554432 1 12356667
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CC-CCCHhHHHHH
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGV-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LV-EPHVYHYACM 416 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l 416 (569)
...|...|++++|+..|++..+... .++ ..++..+..++...|++++|...+++..+.. +- +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777777888888877777654210 011 2367777888888888888888888776421 11 2235677888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-------PMEPDVFVWGALLGGCQMHGN---VELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
..++.+.|++++|...+++. +.+.....+..+...+...|+ +++|..++++. ...|....++..++..|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888889988888888876 111122335667777778888 67777777665 22244456788899999
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 038890 487 AKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (569)
.+.|++++|...+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=8.7e-13 Score=124.43 Aligned_cols=240 Identities=11% Similarity=0.057 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCC
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEE---MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GLD 305 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 305 (569)
.++..+...+...|++++|..+|+++....... ..+.....+..+..++...|++++|...++++.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566666666666666666666665210000 11223344555555555556666665555554432 111
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAE------GVRP-NHVTFV 378 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~ 378 (569)
+. ...++..+...+...|++++|+..+++..+. +..| ....+.
T Consensus 108 ~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 108 PA------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HH------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hH------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 10 1233444555555555555555555555432 1112 234566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhc-----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---------CCCC-
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVY-----L-VEPHVYHYACMIDILSRAGLFSEAERLIRSM-P---------MEPD- 441 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~- 441 (569)
.+...+...|++++|...++.+.+.. + -+....++..+..+|...|++++|...++++ . ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 66677777777777777777766431 1 1122356677777777788888887777766 1 1111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 442 ------VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 442 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222333344566667777778888777888888899999999999999999999998765
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=9.9e-12 Score=107.26 Aligned_cols=167 Identities=10% Similarity=0.022 Sum_probs=127.8
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
+..+|..+...|...|++++|...|++..+ .+..+|..+..++...|++++|+..+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 345566666666666666666666665542 355667777777888888888888888877643 2245666777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...++++.+...+....... +.+...+..+..++.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888899999999988887544 456778888899999999999999999888 4444 677889999999999999999
Q ss_pred HHHHHHHhhcCCCCh
Q 038890 462 EKVAQYLIDLDPLNH 476 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~ 476 (569)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988764
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.9e-10 Score=107.00 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=135.6
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHhCCCCcchhHHHHHH
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACA-------YLGAI-------DHGKWVHGYLRRSGLDCDVVIGTALVD 316 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (569)
++|..+|++.... .+.+...|..++..+. ..|++ ++|..+|++..+.-.+.+...+..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5666677766531 1344555555555543 23554 677777777766311334456667777
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK--K-DTL-AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC-AHSGLVE 391 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~ 391 (569)
.+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 77777777777777776554 2 233 67777777777777777777777777643 22333443332222 1257777
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-P---MEP--DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777776544 345667777777777777777777777776 2 244 3456677777777777777777777
Q ss_pred HHHhhcCCCCh
Q 038890 466 QYLIDLDPLNH 476 (569)
Q Consensus 466 ~~~~~~~p~~~ 476 (569)
+++.+..|++.
T Consensus 265 ~~a~~~~p~~~ 275 (308)
T 2ond_A 265 KRRFTAFREEY 275 (308)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHccccc
Confidence 77777777644
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=3.4e-11 Score=117.37 Aligned_cols=233 Identities=7% Similarity=-0.107 Sum_probs=163.7
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC------CCcchhHH
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL------DCDVVIGT 312 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 312 (569)
....+...|++++|...|++........+-.+ ...++..+..++...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777777777777777653210011111 235666677777777777777777777665311 11134567
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK-----KD----TLAWTAMISVFALNGYGKEAFDTFREMEAE----GV-RPNHVTFV 378 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 378 (569)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776643 11 246778888899999999999999888762 23 22356788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCC---CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLV---EPHVYHYACMIDILSRAGL---FSEAERLIRSMPMEPD-VFVWGALLGG 451 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 451 (569)
.+..++...|++++|...+++..+...- +.....+..+...+...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999887643211 1112335678888888898 8999999999855554 3477788899
Q ss_pred HHhcCCHHHHHHHHHHHhhcC
Q 038890 452 CQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~ 472 (569)
+...|++++|...++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=4.7e-11 Score=102.77 Aligned_cols=163 Identities=12% Similarity=-0.006 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34455556666666666666666655432 2245566666677777777777777777776443 34566777777788
Q ss_pred HHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038890 421 SRAGLFSEAERLIRSM-P-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++.+.|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 2 2346677888888888999999999999999998888888999999999999999999999
Q ss_pred HHHHHHCC
Q 038890 499 RNLMKERG 506 (569)
Q Consensus 499 ~~~m~~~g 506 (569)
+++..+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 98886643
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.8e-11 Score=127.44 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=143.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+..+|+.+...+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+..|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3467888888899999999999999998874 444 6788889999999999999999999998644 4567899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
..+|...|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 5556 577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 038890 495 VKKTRNLMKE 504 (569)
Q Consensus 495 A~~~~~~m~~ 504 (569)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=2.5e-10 Score=107.34 Aligned_cols=212 Identities=8% Similarity=-0.038 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYG-------KCGCV-------ERAYGVFKEMPK---K-DTLAWTAMISVFAL 351 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 351 (569)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888764 667788888887776 35886 899999998654 2 55689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH-HcCCHHH
Q 038890 352 NGYGKEAFDTFREMEAEGVRPNH-V-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS-RAGLFSE 428 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 428 (569)
.|++++|..+|++..+. .|+. . .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 5543 3 78888899999999999999999998533 344555554444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 429 AERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDL---DPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 429 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++.+. .|. +...|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3333 6788999999999999999999999999996 443 6678999999999999999999999999
Q ss_pred HHCC
Q 038890 503 KERG 506 (569)
Q Consensus 503 ~~~g 506 (569)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.3e-09 Score=112.10 Aligned_cols=404 Identities=10% Similarity=0.011 Sum_probs=275.2
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-C
Q 038890 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLD---GLVGASVYGQVVKFGV-C 169 (569)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~ 169 (569)
.|...|..++..+...+... .+..+|+.+... .+.....|...+..-.+.++ .+.+..+|++.+...+ .
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~------~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWK------QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred CCHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 48899999999998888888 999999999985 33355567777777778888 9999999999988652 4
Q ss_pred CcHhHHHHHHHHHHhcCCH--------HHHHHHHhhcC------CC-ChhHHHHHHHHHHh---------cCCHHHHHHH
Q 038890 170 DDVFVQNSVISLFMACGFV--------TSARMLFDEMS------NR-DVVSWNAMIIGYLR---------SGDLDVALDL 225 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~g~~~~A~~~ 225 (569)
|++..|...+....+.++. +...++|+... .+ +...|...+..... .++++.+..+
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i 216 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL 216 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence 7888888888766665543 33446776533 22 34578877765442 3457889999
Q ss_pred HHhcCC-CC--h-hHHH---HHHHHHH----------hCCChHHHHHHHHHchhc--cccCCC------------Cc---
Q 038890 226 FRRMKK-RN--I-FSWN---SIITGFV----------QGGRAREALELFQEMQSS--SVEEMV------------KP--- 271 (569)
Q Consensus 226 ~~~~~~-~~--~-~~~~---~l~~~~~----------~~g~~~~a~~~~~~m~~~--~~~~~~------------~p--- 271 (569)
|++... |. . .+|. .+...+. ...+++.|...+.++... ++...+ ++
T Consensus 217 y~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 217 YKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 998875 21 1 2232 2221110 011234445555543210 101111 11
Q ss_pred -c---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHH-HHHhhCCC---
Q 038890 272 -D---KITIASVLSACAYLG-------AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY-GVFKEMPK--- 336 (569)
Q Consensus 272 -~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--- 336 (569)
+ ...|...+.---..+ ..+.+..+|+++.... +....+|...+..+...|+.++|. .+|+....
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P 375 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP 375 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 1 123333333222221 1344567788887763 667888888888889999999996 99887653
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHccCCHHHHHH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG---------VRPN------------HVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.+...|...+......|+++.|..+|+++.... -.|+ ...|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778888889999999999999988631 0132 2357777777788899999999
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRA-GLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
+|..+.+..+ ......|...+..-.+. ++.+.|..+|+.. ..+.+...|...+......|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999986411 12234444333333344 4589999999988 333356677788888888999999999999999988
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
|+ ....|..++..-.+.|+.+.+..+.+++.+.-
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 73 55778888888889999999999999997653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=9.2e-10 Score=106.71 Aligned_cols=263 Identities=11% Similarity=-0.004 Sum_probs=175.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----ch
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK----ITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-CD----VV 309 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 309 (569)
.....+...|++++|...+++.... ....+. ..+..+...+...|+++.|...+++....... .+ ..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEE----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445566778888888887776531 111122 24455556677778888888877776642110 11 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK-------K----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR--P--NH 374 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~ 374 (569)
++..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 345667778888888888887776542 1 1234556777888889999999999887753221 1 23
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA-----CMIDILSRAGLFSEAERLIRSM-PMEPD-----VF 443 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~ 443 (569)
.++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4667777888889999999999988774422111111121 2334577899999999999988 22221 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+..+...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++....
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667778888999999999999988764321 1236777888999999999999999887653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=6.9e-10 Score=107.81 Aligned_cols=235 Identities=9% Similarity=-0.090 Sum_probs=127.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-----cchh
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-C-----DVVI 310 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~ 310 (569)
......+...|++++|+..|++........+ .+....++..+..++...|+++.|...+.+..+.... + ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788888888888888763210001 1112445666777777788888877777766542100 0 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAE----GVRP-NHVTFVGLLSACA 385 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~ 385 (569)
++.+...|...|++++|.+. |++..+. +..+ ...++..+..++.
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~-------------------------------~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPH-------------------------------LEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34444444455555544444 4443321 1111 1234555566666
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhc
Q 038890 386 HSGLVEKGRWCFVMMRHV---YLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PM--EPD-VFVWGALLGGCQMH 455 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~ 455 (569)
..|++++|...+++..+. .+-+....++..+..++.+.|++++|...+++. .. .|. ...+..+...+...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 666666666666655531 011223455666666677777777777766665 11 122 23344444455555
Q ss_pred CC---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 456 GN---VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 456 ~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++ +.+|...+++. ...|.....+..++..|.+.|++++|...+++..+
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66 55555555541 11233345566777777777777777777776643
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=9.4e-11 Score=113.92 Aligned_cols=162 Identities=7% Similarity=-0.091 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----C
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAE----GV-RP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----H 409 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 409 (569)
.++..+...|...|+++.|+..+++..+. +. .+ ...++..+..+|...|++++|...|++..+...-.+ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35666677777777877777777776542 11 11 245778888999999999999999988765321112 2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCChh
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-P-----MEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-----PLNHA 477 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p~~~~ 477 (569)
..++..+..+|...|++++|+..+++. . ..| ...++..+...+...|++++|...++++.+.. |....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999999887 2 334 35678889999999999999999999999864 33344
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGR---FDDVKKTRNL 501 (569)
Q Consensus 478 ~~~~l~~~~~~~g~---~~~A~~~~~~ 501 (569)
.+..+...|...|+ +.+|..++++
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 56777778888888 7778777765
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=1.4e-10 Score=103.93 Aligned_cols=188 Identities=13% Similarity=-0.065 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLS 382 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~ 382 (569)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34445555555555555555555554432 33444444555555555555555555555543 222 334445555
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHV-------YHYACMIDILSRAGLFSEAERLIRSM-PMEPD---VFVWGALLGG 451 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 451 (569)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555332 2222 23444455555555555555555554 33443 2334444444
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.. .+..+++++....+.+...+.... ....+.+++|...+++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 432 223334444444444433332222 223344599999999988743
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=9.5e-12 Score=117.25 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=147.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChHHHHHHHHHchhcccc---CC
Q 038890 203 VVSWNAMIIGYLRSGDLDVALDLFRRMKK--------RN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVE---EM 268 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~ 268 (569)
..++..+...+...|++++|...|+++.+ .+ ...+..+...|...|++++|...+++....... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788899999999999999999999864 22 346888999999999999999999999843100 11
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCCC-cchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhH
Q 038890 269 VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GLDC-DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLA 341 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 341 (569)
.+....++..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----------- 175 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY----------- 175 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-----------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-----------
Confidence 2334667888888999999999999999887764 1111 223344444555555555555544
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc------CCCC
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAE------GVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY------LVEP 408 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 408 (569)
++++.+. +..|+ ..++..+..++...|++++|...++++.+.. ...+
T Consensus 176 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 176 --------------------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp --------------------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred --------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444331 11121 2345555666666666666666666655321 0111
Q ss_pred C-------HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 409 H-------VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 409 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
. ...+..+...+...+.+.+|...++.. ...| +..++..+...|...|++++|.+.++++.++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 111222233334445555555666665 2334 4567888899999999999999999999887654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=7.8e-11 Score=117.86 Aligned_cols=211 Identities=10% Similarity=-0.003 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG-LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
++++.++...... +.+...+..+...+...|++ ++|...|++.++..+. +...+..+..+|.+.|++++|...|++.
T Consensus 86 ~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766532 23556777777888899999 9999999999998744 6788889999999999999999999988
Q ss_pred CC--CChhHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhC--------CChHHHHHH
Q 038890 199 SN--RDVVSWNAMIIGYLRS---------GDLDVALDLFRRMKK---RNIFSWNSIITGFVQG--------GRAREALEL 256 (569)
Q Consensus 199 ~~--~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------g~~~~a~~~ 256 (569)
.+ |+...+..+...+... |++++|+..|++..+ .+...|..+..+|... |++++|+..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 66 6667788888888888 888888888888763 3466788888888877 888888888
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
|++..+.. .....+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+..+.
T Consensus 244 ~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 244 YAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88887321 0001367778888888888888888888888887765 4456667777778888888888877766553
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=3e-10 Score=101.68 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=161.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHH
Q 038890 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMI 346 (569)
Q Consensus 270 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 346 (569)
+.|+..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|...|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3566888889999999999999999999999987447777777799999999999999999998764 3567888999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN-H-------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH---VYHYAC 415 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 415 (569)
..+...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+...+. .|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHH
Confidence 9999999999999999999885 333 3 45777788889999999999999999853 344 577888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSM-P-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
+..+|...|+. +++++ . ...+...+.... ....+.+++|...++++.+..|.++.+...+...
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 88888766543 23333 1 122344444433 3456678999999999999999998887777654
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=4.9e-10 Score=96.32 Aligned_cols=166 Identities=12% Similarity=-0.041 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACA 385 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 385 (569)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666778888889999999999888753 56778888899999999999999999988753 335678888889999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
..|++++|...++.+.+.. +.+...+..+..++...|++++|...++++ .. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998654 567788899999999999999999999988 32 3467889999999999999999999
Q ss_pred HHHHHhhcCCCChh
Q 038890 464 VAQYLIDLDPLNHA 477 (569)
Q Consensus 464 ~~~~~~~~~p~~~~ 477 (569)
.++++.+..|.+..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999998877654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=2.8e-09 Score=103.23 Aligned_cols=221 Identities=11% Similarity=-0.046 Sum_probs=127.4
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVF----VQNSVISLFMACGFVTSARMLFDEMSN-----RDV----VSWNAMII 211 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~ 211 (569)
..+...|+++.|...++..+......+.. .++.+..++...|++++|...+++... .+. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556789999999998888765332322 455666778888898888888877654 121 22455666
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 212 GYLRSGDLDVALDLFRRMKK-------R----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
.+...|++++|...+++..+ + ....+..+...+...|++++|...+++........+......++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 67777777777777766542 1 122455566777777888888887777653221111111234566666
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCcc-hhHH-----HHHHHHHhcCChHHHHHHHhhCCCCCh-------hHHHHHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLDCDV-VIGT-----ALVDMYGKCGCVERAYGVFKEMPKKDT-------LAWTAMIS 347 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~ 347 (569)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...++....... ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6777777777777777776653211111 1111 122335566666666666665543211 12333444
Q ss_pred HHHHcCChhHHHHHHHHH
Q 038890 348 VFALNGYGKEAFDTFREM 365 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m 365 (569)
.+...|++++|...+++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444455555555544443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=3.8e-10 Score=104.41 Aligned_cols=235 Identities=10% Similarity=0.034 Sum_probs=119.2
Q ss_pred hCCChHHHHHHHHHchhccc---cCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC-CCcchhHHHHH
Q 038890 246 QGGRAREALELFQEMQSSSV---EEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GL-DCDVVIGTALV 315 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 315 (569)
..|++++|+..|++....-. ....+....++..+..++...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555555442100 1112234556666677777777777777777766543 11 12234455555
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
..|...|++++|...|++.. .++++......+....++..+...+...|++++|..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRAL------------------------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55556666655555554322 111111100001123455566666666677777766
Q ss_pred HHHHhHHhc-----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcC--
Q 038890 396 CFVMMRHVY-----L-VEPHVYHYACMIDILSRAGLFSEAERLIRSM----------PMEPD-VFVWGALLGGCQMHG-- 456 (569)
Q Consensus 396 ~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~l~~~~~~~~-- 456 (569)
.+++..+.. + -+....++..+..+|...|++++|..+++++ ...+. ...|..+.......+
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 666665430 0 1112355666677777777777777776655 11222 122333332222222
Q ss_pred ----CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 457 ----NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 457 ----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+..+...++......|....++..++.+|.+.|++++|..++++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223333333333333355566788888888889999999988887754
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=8.8e-09 Score=94.18 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCCC
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKA----------GRFDDVKKTRNLMKERGIRKEVP 512 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~ 512 (569)
..+...+...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+.. |+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~-- 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PD-- 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TT--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CC--
Confidence 567788999999999999999999999884 45788999999877 99999999999998744 33
Q ss_pred ceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhC
Q 038890 513 GCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNG 553 (569)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (569)
++...++...+.++.+++.+.
T Consensus 228 --------------------~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 --------------------SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------------CTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHHHHHHHh
Confidence 334566777777776666553
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=7.1e-10 Score=115.47 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=105.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSA 383 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 383 (569)
...++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444444555555555555555544332 23455666666666667777777777776663 33 35667777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777543 345677777888888888888888888777 4455 456777788888888888888
Q ss_pred HHHHHHHhhc
Q 038890 462 EKVAQYLIDL 471 (569)
Q Consensus 462 ~~~~~~~~~~ 471 (569)
.+.++++.++
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777664
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=3.9e-09 Score=85.13 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=93.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455556666677777777776666432 345566666777777777777777777766 22 2356677777888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|++++|.+.++++.+..|.++.++..++.++.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888876643
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1e-08 Score=95.38 Aligned_cols=226 Identities=10% Similarity=-0.030 Sum_probs=134.5
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccCCHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++++|...|++. ...|...|++++|...|.+........+.+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666666554 45667778888888888776532101121222 456667777777777777777777
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCC-CC-
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALN-GYGKEAFDTFREMEAEGVR-PN- 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~- 373 (569)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 665542 1222332222 12455666667775 7777777777776542110 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-
Q 038890 374 ---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-----YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF- 443 (569)
Q Consensus 374 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 443 (569)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|+..|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2456777778888888888888888877533111111 15667777888888888888888887 5455422
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 444 -----VWGALLGGCQ--MHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 444 -----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.+..++.++. ..+++++|+..|+++..++|.....+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 2344455553 356678888888777777765544333
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.1e-09 Score=102.09 Aligned_cols=186 Identities=12% Similarity=0.033 Sum_probs=126.4
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK-------K--DTLAWTAMISVFALNGYGKEAFDTFREMEAE----GVRP-NHVTFVGLLS 382 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~ 382 (569)
.|...|++++|...|.+... + ...+|+.+..+|...|++++|+..|++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666655554432 1 1345667777777777888777777776542 1111 1346778888
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 038890 383 ACAHS-GLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DV-----FVWGAL 448 (569)
Q Consensus 383 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 448 (569)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|+..|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 89986 9999999999988754310111 356888999999999999999999988 2222 21 257778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChh-----HHHHHHHHHH--HcCChHHHHHHHHHH
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHA-----FYVNLCDMYA--KAGRFDDVKKTRNLM 502 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m 502 (569)
..++...|++++|...++++.++.|.... .+..++.++. ..+++++|...|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 88899999999999999999999887544 3445666664 356788888887654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=2.3e-09 Score=98.12 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhH
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMH----------GNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
..+..+|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56788899999999999999988 33333 45777778888766 89999999999999999998643
Q ss_pred ---HHHHHHHHHHcCChHH
Q 038890 479 ---YVNLCDMYAKAGRFDD 494 (569)
Q Consensus 479 ---~~~l~~~~~~~g~~~~ 494 (569)
...+...+.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555554443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=1.8e-08 Score=91.90 Aligned_cols=159 Identities=10% Similarity=0.000 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-----CHhHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-----HVYHYA 414 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 414 (569)
++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.+.+. .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33444555555555555555555554433211 2334445555555555566665555555532 23 123333
Q ss_pred HHHHHH--HHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----------CCCChhHH
Q 038890 415 CMIDIL--SRAG--LFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL----------DPLNHAFY 479 (569)
Q Consensus 415 ~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~~~ 479 (569)
.|+.++ ...| ++.+|..+|+++ ...|+..+...++.++...|++++|++.++.+.+. +|.++.++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 333331 2222 555555555555 33343222222333555556666666665554443 25555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..++......|+ +|.++++++.+
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 555545555554 55555555554
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=9.5e-09 Score=91.54 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 456678899999999999999999999876 5689999999999999999999999887653
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=3.2e-08 Score=90.31 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
+...+++....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445666777777777777777776533 234566677788888889999999998887
Q ss_pred HCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 367 AEGVRP-----NHVTFVGLLSAC--AH--SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 367 ~~~~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
+. .| +..+...+..++ .. .++++.|..+|+++...+ |+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 73 55 355556666553 22 338899999999987543 54333334444888999999999998765
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 437 PM----------EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 437 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
.. .| |..++..++......|+ +|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 55677567666666777 88999999999999988653
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=2.6e-10 Score=94.34 Aligned_cols=141 Identities=9% Similarity=-0.078 Sum_probs=105.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL 425 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (569)
..+...|++++|+..+...... .|+ ...+..+...|...|++++|...|++..+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3344556777777777766542 233 2345567777888888888888888887544 4567888888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEK-VAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
+++|+..|++. ...| +...+..+...+.+.|++++|.+ +++++.+++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888887 5455 56788888888888888876555 4688999999999888888888877774
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.3e-09 Score=113.99 Aligned_cols=145 Identities=7% Similarity=-0.096 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. +.+...|..+..+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 344444444444444444444444444321 1123344444444444444444444444444322 2233444444444
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+.+.|++++ ++.|++. ...| +...|..+..++...|++++|++.|+++.+.+|.+..++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 444444444 4444444 2222 333444444444444444444444444444444444444444444433
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2e-08 Score=92.67 Aligned_cols=213 Identities=9% Similarity=-0.022 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhcccc---CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-------
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVE---EMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSG------- 303 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 303 (569)
..++..+...|...|++++|...+++....... ...+....++..+..++...|++++|...+.++.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456788888999999999999999887632100 1123346678888899999999999999998877641
Q ss_pred CCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038890 304 LDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLS 382 (569)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 382 (569)
.+....++..+...|...|++++|...|++..+ ++..... +..| ...++..+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~-~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE------------------------IYATRLG-PDDPNVAKTKNNLAS 177 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHSC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------HHHHhcC-CCCHHHHHHHHHHHH
Confidence 122234455555555555665555555543221 1111000 1112 1235555666
Q ss_pred HHHccCCHHHHHHHHHHhHHhc------CCCC-CHhHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVY------LVEP-HVYHYACMIDILSRA------GLFSEAERLIRSMP-MEP-DVFVWGA 447 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~ 447 (569)
++...|++++|...+++..+.. ...+ ....|..+...+... ..+..+...++..+ ..| ...++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6666666666666666655321 0111 122233333333222 22444445555552 223 3457778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+...+...|++++|...++++.+.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888899999999998887764
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=1.5e-08 Score=93.86 Aligned_cols=176 Identities=9% Similarity=-0.072 Sum_probs=142.0
Q ss_pred hHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 324 VERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 324 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
.+.....+......+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4445555555555566677788888999999999999999998753 225678888899999999999999999998854
Q ss_pred cCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhH
Q 038890 404 YLVEPHVYHY-ACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAF 478 (569)
Q Consensus 404 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 478 (569)
. |+.... ......+...++.++|+..+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..+
T Consensus 181 ~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 D---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3 554333 33333466778888888888887 4344 67889999999999999999999999999999987 889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999888764
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=3.2e-08 Score=87.08 Aligned_cols=163 Identities=11% Similarity=-0.101 Sum_probs=129.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG----LVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
.++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+...+ .-++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 356667777777777888888888888887765 55666667777776 6 88999999988874 346677
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 413 YACMIDILSR----AGLFSEAERLIRSM-PMEPD---VFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 413 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+..|...|.. .+++++|+.+|++. ...|+ ...+..|...|.. .+++++|...|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888876 78999999999988 44443 6788888888888 78999999999999888 56677889
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHHCCCC
Q 038890 481 NLCDMYAKA-G-----RFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 481 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 508 (569)
.|+.+|... | ++++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999998864 3 899999999999888753
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2e-08 Score=80.80 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677788888899999999998887653 2356677778888888899999999999888543 45677888888899
Q ss_pred HHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 421 SRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
...|++++|..+++++ .. +.+..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 32 336778888889999999999999999999888775
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=3.2e-07 Score=91.60 Aligned_cols=351 Identities=10% Similarity=-0.026 Sum_probs=200.1
Q ss_pred CChhHHHHHhhcCCC--CCcccHHHHHHHHhcCCC-CCCCCChhHHHHHHHHHHHC-CCCC-CcccHHHHHHHHH----c
Q 038890 79 GSLSYATNVFSHIKR--SDLYTYNIMIRANACKSS-ETNDTHSGKCLKLYKQMLCT-GISP-DCLTFPFLLKECT----K 149 (569)
Q Consensus 79 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~~~~~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~ 149 (569)
|+++.+..+|+.... |++..|...+....+.++ .. ....+|+..+.. |..| +...|...+..+. .
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~------~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKF------KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhh
Confidence 678888888888764 788888888877666553 23 567788877764 4333 3445555555443 2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 150 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
.++.+.+..+|+.++...+..-...|...... .+......+..++.+. .+.+..|..+++.+
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-----------------~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-----------------LPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH-----------------hHHHHHHHHHHHHH
Confidence 35677788888888874322112233322221 1112222333332221 01122233232222
Q ss_pred CC----CChhHHHHHHHHHHhCC--C-----hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 230 KK----RNIFSWNSIITGFVQGG--R-----AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGY 298 (569)
Q Consensus 230 ~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 298 (569)
.. .+...|...+..-...+ - .+.+..+|++++.. .+.+...|...+.-+...|+.+.|..++++
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-----~p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-----FYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 23345555555433221 1 34566788887631 345577777777777888999999999999
Q ss_pred HHHhCCCCcchhHHHHHHHHHhcCChHH-HHHHHhhCC--C-------C---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 299 LRRSGLDCDVVIGTALVDMYGKCGCVER-AYGVFKEMP--K-------K---DTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
.... |.+...+.. |....+.++ ...+.+... . + ....|...+....+.++.+.|..+|++.
T Consensus 239 Ai~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 239 GIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8887 444433332 222111111 111222111 0 0 1234555666666677888899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAH-SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFV 444 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 444 (569)
.. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH
Confidence 32 12244444322222112 236888999998888655 2345556667777788888899999988872 25677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
|...+..-...|+.+.+..+++++.+
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777778888888888887764
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1.9e-09 Score=89.14 Aligned_cols=124 Identities=12% Similarity=0.029 Sum_probs=102.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
|...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445567789999999998876322 223556778999999999999999999998 5555 67899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH-HHHHHHC
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT-RNLMKER 505 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 505 (569)
+++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5777663
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=2.2e-08 Score=102.81 Aligned_cols=160 Identities=10% Similarity=-0.037 Sum_probs=125.2
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 321 CGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCF 397 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 397 (569)
.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998853 235678888999999999999999999
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH---GNVELGEKVAQYLIDLD 472 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 472 (569)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++.+.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998654 456789999999999999999999999998 4444 577888999999999 99999999999999999
Q ss_pred CCChhHHHHHH
Q 038890 473 PLNHAFYVNLC 483 (569)
Q Consensus 473 p~~~~~~~~l~ 483 (569)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888877766
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=2.6e-07 Score=85.23 Aligned_cols=221 Identities=8% Similarity=-0.003 Sum_probs=98.9
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCcchhHHHHHHHH----Hhc---
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG--AIDHGKWVHGYLRRSGLDCDVVIGTALVDMY----GKC--- 321 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 321 (569)
++|+.++..++... +-+...|+.--.++...+ ++++++..++.+...+ +-+..+++.-...+ ...
T Consensus 50 ~~aL~~t~~~L~~n-----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHITELGINEL-----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHC-----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 46666666665321 223344555555555555 6666666666666554 33344444333322 223
Q ss_pred CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------H
Q 038890 322 GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGK--EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL------V 390 (569)
Q Consensus 322 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~ 390 (569)
+++++++.+++.+.+ .+..+|+.-...+...|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 445555555554432 23444444444444445444 555555555543222 33344443333334333 4
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE-AERLIRSM-PM----EPDVFVWGALLGGCQMHGNVELGEKV 464 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 464 (569)
+++++.++.+.... +-|...|+.+...+.+.|+... +.+++.++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444444322 3344444444444444444222 22333333 11 12334444444444444444444444
Q ss_pred HHHHhh-cCCCChhHHH
Q 038890 465 AQYLID-LDPLNHAFYV 480 (569)
Q Consensus 465 ~~~~~~-~~p~~~~~~~ 480 (569)
++.+.+ .+|.....|.
T Consensus 281 ~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHTTCGGGHHHHH
T ss_pred HHHHHhccChHHHHHHH
Confidence 444443 3444444443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.1e-08 Score=85.36 Aligned_cols=156 Identities=9% Similarity=0.032 Sum_probs=94.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH-HHHc
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI-LSRA 423 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 423 (569)
+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.... |+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHHhh
Confidence 3444455555555555555544321 1123445555555555555555555555554322 222222221111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHcCChHHHHHHH
Q 038890 424 GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 424 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+...+|+..+++. ...| +...+..+...+...|++++|...++++.+.+|.. +.++..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222355666655 3345 57788888888999999999999999999988764 568889999999999999999988
Q ss_pred HHHHH
Q 038890 500 NLMKE 504 (569)
Q Consensus 500 ~~m~~ 504 (569)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=4.3e-08 Score=85.99 Aligned_cols=182 Identities=8% Similarity=-0.097 Sum_probs=121.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGY 354 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (569)
.+......+...|++++|...|+++.+.. |.+...+... ..... ..........+..++...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444455667778888888777777653 1112221110 00000 00012233447888899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC--HHHHHHH
Q 038890 355 GKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL--FSEAERL 432 (569)
Q Consensus 355 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~ 432 (569)
+++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|+ .+.+...
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999988853 2256788888999999999999999999998654 4567888888888876654 4455666
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 433 IRSMP-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 433 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
++... ..|....+.....++...|++++|+..|++++++.|.+
T Consensus 147 ~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66662 22233344555666778899999999999999999974
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1e-08 Score=84.33 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=88.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3567788888999999999999999988 4455 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=9e-08 Score=98.30 Aligned_cols=146 Identities=12% Similarity=-0.040 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...+...|++++|+..|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 33455566666666666666666666665543 234556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038890 364 EMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA---GLFSEAERLIRSM 436 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 436 (569)
+..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666542 2234556666666666666666666666666433 33455666666666666 6666666666655
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1.4e-07 Score=98.77 Aligned_cols=189 Identities=12% Similarity=-0.052 Sum_probs=149.0
Q ss_pred HccCCHHHHHHHHHHHH--------HhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 284 AYLGAIDHGKWVHGYLR--------RSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
...|++++|...++++. +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 432 55677888899999999999999999998764 4678899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998853 2246778888999999999999 99999998654 45678999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCCChh
Q 038890 433 IRSM-PMEPD-VFVWGALLGGCQMHGN-----VELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 433 ~~~~-~~~p~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 477 (569)
|+++ ...|+ ...+..+..++...++ .+...+..+...+..+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999 67776 4577777777766554 23444444444444444443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=7e-08 Score=90.44 Aligned_cols=221 Identities=11% Similarity=-0.006 Sum_probs=154.1
Q ss_pred hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 246 QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-----~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-----KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc-----ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHH
Confidence 3567788888888876422 110 0 11146677777766554 45677788888
Q ss_pred HHHHHHhhCCCC-----C----hhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCCHH
Q 038890 326 RAYGVFKEMPKK-----D----TLAWTAMISVFALNGYGKEAFDTFREMEAEG---VRPN--HVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 326 ~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~ 391 (569)
+|...|.+...- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 888877765431 1 3467888889999999999999998876421 1121 3567788888888 9999
Q ss_pred HHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHH
Q 038890 392 KGRWCFVMMRHVYLVEP----HVYHYACMIDILSRAGLFSEAERLIRSM-PM---EPD----VFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~ 459 (569)
+|+..|++..+...-.. ...++..+..+|.+.|++++|+..|++. .+ .++ ...+..++.++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999998875431111 1467888999999999999999999987 11 122 236667777788889999
Q ss_pred HHHHHHHHHhhcCCCChh-----HHHHHHHHHHHcCChHHHHHH
Q 038890 460 LGEKVAQYLIDLDPLNHA-----FYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~ 498 (569)
+|...++++. ..|.... ....++.++ ..|+.+.+..+
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999999 8886432 244555555 56777666653
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=8.1e-08 Score=76.40 Aligned_cols=107 Identities=7% Similarity=-0.060 Sum_probs=69.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45555666666677777777776666433 345666666666777777777777766666 3333 4556666777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
..|++++|++.|+++++++|.+..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777777777777666665554
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=1.2e-07 Score=83.35 Aligned_cols=125 Identities=13% Similarity=-0.016 Sum_probs=98.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|...|++.. .|+...|..+..++.+.|++++|+..|++. ...| +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4445566677788888888887664 456777888888888888888888888877 3333 56778888888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCh----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNH----------------AFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|++++|++.++++.+..|.+. .++..++.+|.+.|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8899999999988888777766 888899999999999999999999887654
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=1.4e-07 Score=79.07 Aligned_cols=128 Identities=6% Similarity=-0.020 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777788888888888888887543 456778888888999999999999998887 3334 677888999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH--HHHcCChHHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM--YAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 504 (569)
...|++++|...++++.+..|.+...+..+..+ +.+.|++++|...++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988887555554 8888999999999987743
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=5.3e-06 Score=76.48 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHH----HHc---C
Q 038890 286 LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--CVERAYGVFKEMPK---KDTLAWTAMISVF----ALN---G 353 (569)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g 353 (569)
....++|+.+++.+...+ |-+..+++.-..++...| ++++++++++.+.. .+..+|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 344568899999998876 556677888888888888 99999999998864 3556677655555 555 7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC------
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE--KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL------ 425 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 425 (569)
++++++.+++++.+... -+...|..-...+...|.++ +++..++.+.+.. +-|...|+.....+.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhh
Confidence 89999999999998643 36677877777777788887 9999999999665 5677888888877777776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV-ELGEKVAQYLIDLD---PLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..++.++.+.+ |.++.++..++.+|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 89999999887 4444 778898888888888874 44667888877766 888999999999999999999999999
Q ss_pred HHHHH
Q 038890 500 NLMKE 504 (569)
Q Consensus 500 ~~m~~ 504 (569)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=9.4e-08 Score=81.31 Aligned_cols=157 Identities=8% Similarity=-0.116 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA-CA 385 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 385 (569)
....+...+...|++++|...|++..+ .+...+..+...+...|++++|+..|++.... .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566677778888888888887764 35667777778888888888888888776653 2333322222111 11
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD---VFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a 461 (569)
..+....+...++...+.. +.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222234677777777543 445788888888888999999999888887 55554 45788888888888999888
Q ss_pred HHHHHHHhh
Q 038890 462 EKVAQYLID 470 (569)
Q Consensus 462 ~~~~~~~~~ 470 (569)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=1.2e-06 Score=81.28 Aligned_cols=161 Identities=10% Similarity=0.003 Sum_probs=121.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGV-RPNHV----TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYA 414 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 414 (569)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999876422 22211 2334666677788999999999998853221233 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHH
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-----PM---EPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFY 479 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~ 479 (569)
.+..+|...|++++|+..|+++ .. .+. ..++..+...|...|++++|...++++.+..+. -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999998887 11 122 247888999999999999999999999875422 26789
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHH
Q 038890 480 VNLCDMYAKAGR-FDDVKKTRNLMKE 504 (569)
Q Consensus 480 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 504 (569)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988753
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=8.9e-08 Score=85.19 Aligned_cols=184 Identities=11% Similarity=-0.030 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--cchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch---hHHH
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDC--DVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DT---LAWT 343 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 343 (569)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ | +. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677788888888888888888754211 134566777888888888888888887653 2 11 1344
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 344 AMISVFAL------------------NGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 344 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
.+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 23445555555554442 22221 11110000 0000000
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 011135667888999999999999988 33443 25688889999999999999999999998888754
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=2.5e-08 Score=81.98 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=85.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888899999999999999887 3344 6778888999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...|++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887643
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=2.8e-07 Score=80.73 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK-ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
...+......+...|++++|+..|++.... .|+. ..+... .... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWT-----NVDK--------------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHH-----HSCT--------------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHh-----hhcc--------------hhhhhHHHHH
Confidence 344555667889999999999999998742 3432 223220 0000 0011122334
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 466777777777777777776643 356677777888888888888888888887742 2245566666666654443
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 390 --VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 390 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
.+.+...++.... ..|....+.....++...|++++|+..|++. ...|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344444444431 1222334445566667778888888888887 7778765544433
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.4e-07 Score=87.34 Aligned_cols=133 Identities=8% Similarity=-0.052 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++ ...|+.........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344567777888899999999999999998655 557788999999999999999999999999 55676654333333
Q ss_pred -HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 -GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 -~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...++.+.|+..++++.+.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 36678888999999999999999999999999999999999999999999998854
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=2.8e-07 Score=85.72 Aligned_cols=164 Identities=9% Similarity=-0.026 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCC--Hh
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-----VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV--EPH--VY 411 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 411 (569)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788889999999999887765322111 22344556677889999999999887643211 111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Ch
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM----PMEPD-----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NH 476 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 476 (569)
+|+.+...|...|++++|+..|+++ ...|+ ..++..+...|...|++++|...++++.+..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999876 11222 258888999999999999999999999875421 25
Q ss_pred hHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDV-KKTRNLMKE 504 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 504 (569)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777887653
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=1.2e-07 Score=75.39 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=89.9
Q ss_pred CCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 407 EPH-VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 407 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344 367788899999999999999999998 4445 6789999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=1.2e-06 Score=87.35 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHh
Q 038890 118 SGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF-VTSARMLFD 196 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 196 (569)
.+.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.|+ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55677777777762 344 8888888888888774 4688888888777766663 344455555
Q ss_pred hcCC------CChhHHHHHHHHHH----hcCCHHHHHHHHHhcCC
Q 038890 197 EMSN------RDVVSWNAMIIGYL----RSGDLDVALDLFRRMKK 231 (569)
Q Consensus 197 ~~~~------~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 231 (569)
.... .+...|...+..+. ..++.+.+..+|++...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 4332 34566666666543 23566777777777654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=3.1e-07 Score=72.56 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566677777788888888888888877543 445677788888888888888888888877 22 3366788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999999999999998888888888776654
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=2.4e-07 Score=73.94 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|+++.|...++...... +.+...+..+..++...|++++|+..+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3456667777788888888888888887543 446777888888888889999998888877 3333 57788888889
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 492 (569)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=3.9e-07 Score=80.10 Aligned_cols=172 Identities=11% Similarity=-0.049 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC----CHHHHHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG----FVTSARMLF 195 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 195 (569)
+|++.|++..+.| ++..+..+...+...+++++|..+|+...+.| +...+..|..+|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 6788888888864 67778788888888999999999999998876 55667778888877 6 899999999
Q ss_pred hhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----CCChHHHHHHHHHch
Q 038890 196 DEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKKRN-----IFSWNSIITGFVQ----GGRAREALELFQEMQ 261 (569)
Q Consensus 196 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 261 (569)
++..+ .+..++..+...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+..|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 88766 466778888888877 789999999999887643 5678888888888 788999999998886
Q ss_pred hccccCCCCccHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHhCC
Q 038890 262 SSSVEEMVKPDKITIASVLSACAYL-G-----AIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 304 (569)
.. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 157 ----~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 ----SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp ----HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred ----Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 32 23444666666666532 2 78899988888888773
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=1e-06 Score=77.41 Aligned_cols=125 Identities=9% Similarity=-0.059 Sum_probs=74.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|+...+.. +.+...|..+..++...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcc
Confidence 3444444555555555554432 3344455555555555555555555555555332 334455555555555555
Q ss_pred CHHHHHHHHHhC-C----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 425 LFSEAERLIRSM-P----------------MEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 425 ~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
++++|+..|++. . ..| ....+..+..++...|++++|...++++.+..|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 555555555554 1 222 23677888888999999999999999999998875
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=2.4e-07 Score=74.21 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455666666666777777777776666332 335566666777777777777777777666 2223 56677778888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
+...|++++|.+.++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888777664
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=7.6e-08 Score=88.80 Aligned_cols=192 Identities=8% Similarity=-0.096 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
.+..+...+.+.|++++|...|++... .+...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444445555555555555544331 244555556666666666666666666665532 1234556666666777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|++++|...|+...+.. |+. ..+...+....+......... .......++......+.. + ..|+.++|.+.+
T Consensus 85 ~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 777777777776665322 111 111111111111111111111 112222333333333322 2 368889999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKA-GRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~ 508 (569)
+++.+.+|.+......+...+.+. +++++|.++|.++.+....
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 999999998887777777777776 7789999999988664333
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.1e-07 Score=80.98 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=89.6
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG-CQMHGNV--E 459 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~ 459 (569)
...|++++|...++...+.. +.+...|..+..+|...|++++|+..|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776543 456677788888888888888888888877 3233 56677777777 6778887 8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|...++++.+..|.++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888889998888888887654
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=4.1e-07 Score=86.24 Aligned_cols=94 Identities=16% Similarity=-0.012 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++.+++|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999988 4444 67889999999999999999999999999999999999999999999
Q ss_pred HcCChHHH-HHHHHHHH
Q 038890 488 KAGRFDDV-KKTRNLMK 503 (569)
Q Consensus 488 ~~g~~~~A-~~~~~~m~ 503 (569)
+.|++++| ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666663
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=2.4e-07 Score=75.52 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=84.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3456667778888999999999999887 3344 6778888889999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=3.6e-07 Score=72.64 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777788888888888888877 3334 56788888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHCC
Q 038890 488 KAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g 506 (569)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888876643
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=1.7e-07 Score=87.81 Aligned_cols=197 Identities=7% Similarity=-0.102 Sum_probs=148.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 038890 285 YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFRE 364 (569)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (569)
..|++++|..++++..+... .. .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35678889999988876431 11 01115789999888765 46678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CC--CHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 365 MEAE----GVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV--EP--HVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 365 m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
..+. +-.+. ..+|..+..+|...|++++|...|++..+...- .+ ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7652 11111 347888888999999999999999887643211 12 13577888899988 999999999988
Q ss_pred C-CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 436 M-PM-----EP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN------HAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 436 ~-~~-----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
. .+ .+ ...++..+...+...|++++|+..++++.+..|.+ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 11 14578889999999999999999999999865443 23677788888899999999999999
Q ss_pred HH
Q 038890 502 MK 503 (569)
Q Consensus 502 m~ 503 (569)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=5e-07 Score=74.09 Aligned_cols=104 Identities=10% Similarity=-0.071 Sum_probs=89.3
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038890 371 RPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGA 447 (569)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 447 (569)
.|+ ...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 344 3467777888899999999999999999654 567889999999999999999999999998 4445 5678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+..++...|++++|+..|+++.+..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998864
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=8.1e-06 Score=75.73 Aligned_cols=158 Identities=10% Similarity=-0.113 Sum_probs=119.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---Ch------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPKK---DT------LAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PN----HVTFV 378 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 378 (569)
..+..+...|++++|..++++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788889999999999886542 11 12334666667778999999999999874322 22 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhc----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVY----LVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD-VFVW 445 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 445 (569)
.+..+|...|++++|...|+++.+.. +..+. ..+|..+..+|.+.|++++|+..+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999999887421 11122 347889999999999999999998877 22233 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh
Q 038890 446 GALLGGCQMHG-NVELGEKVAQYLID 470 (569)
Q Consensus 446 ~~l~~~~~~~~-~~~~a~~~~~~~~~ 470 (569)
..+..++...| ++++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999 46999999999876
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=9.6e-07 Score=76.78 Aligned_cols=153 Identities=10% Similarity=-0.058 Sum_probs=91.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CC-CCCHhHHHHHHHHHHHcCCH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LV-EPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~ 426 (569)
..|++++|.++++.+... .......+..+...+...|++++|...+++..... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 446666666644333221 11234455666666666677777766666655311 11 11234566677777777777
Q ss_pred HHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCC
Q 038890 427 SEAERLIRSM----PMEP-D----VFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLN----HAFYVNLCDMYAKAGR 491 (569)
Q Consensus 427 ~~A~~~~~~~----~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~ 491 (569)
++|...+++. ...+ + ...+..+...+...|++++|...++++.+.. ..+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665 1112 2 2356667777778888888888888877532 112 2335778888888888
Q ss_pred hHHHHHHHHHHHH
Q 038890 492 FDDVKKTRNLMKE 504 (569)
Q Consensus 492 ~~~A~~~~~~m~~ 504 (569)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=1.1e-06 Score=70.96 Aligned_cols=100 Identities=10% Similarity=-0.036 Sum_probs=85.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.+...+..+...+...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+.+|.++.++..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345677888888888889999998888877 3334 57788888889999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCC
Q 038890 485 MYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999887643
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=1.8e-06 Score=67.14 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666666666666666666432 335556666666666667777777666665 2223 455666666677
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
...|++++|.+.++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766666555543
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=4.8e-07 Score=71.31 Aligned_cols=94 Identities=13% Similarity=-0.036 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999988 4445 6788889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHC
Q 038890 490 GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 g~~~~A~~~~~~m~~~ 505 (569)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=7.9e-07 Score=74.48 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444455555555555555555555332 234445555555555555555555555544 2222 3444555555555
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChh
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
..|++++|...|+++++..|.+..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HccCHHHHHHHHHHHHHhCCCchH
Confidence 555555555555555555555444
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=3.6e-06 Score=75.78 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=77.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHHHHHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH--VYHYACMIDILS 421 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 421 (569)
.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHH
Confidence 34455666667777777766655432 3333334444456666777777777764442 10 111 235566666777
Q ss_pred HcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 422 RAGLFSEAERLIRSM--P-MEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+.|++++|+..|++. + ..|. .........++.+.|+.++|...|+++...+|. ..+...|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777777766 2 1142 235555666667777777777777777777776 5544444
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.8e-07 Score=75.64 Aligned_cols=105 Identities=11% Similarity=-0.060 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3466677778889999999999999988554 557888889999999999999999999988 4444 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+...|++++|...|+++.+..|.++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999988776543
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=6.5e-07 Score=69.08 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCD 484 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 484 (569)
+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456667777788888888888888776 223 35677888888888899999999999999998888 8888999999
Q ss_pred HHHHc-CChHHHHHHHHHHHHCCC
Q 038890 485 MYAKA-GRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 485 ~~~~~-g~~~~A~~~~~~m~~~g~ 507 (569)
++.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876553
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.6e-06 Score=68.75 Aligned_cols=111 Identities=8% Similarity=-0.149 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 456666777788888888888888887544 456788888888888899999998888887 4444 567888888899
Q ss_pred HhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYA 487 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 487 (569)
...|++++|...++++.+.+ |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777777777665543
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=2.2e-06 Score=79.63 Aligned_cols=161 Identities=9% Similarity=-0.134 Sum_probs=113.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDT------LAWTAMISVFALNGYGKEAFDTFREMEAEGV---RPN--HV 375 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 375 (569)
.+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677778888888877764432 111 2233455566777899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-------PMEP-DV 442 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 442 (569)
+++.+...|...|++++|...|++..+.....|+ ..++..+..+|...|++++|+..+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999887732111122 257888999999999999999998876 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038890 443 FVWGALLGGCQMHGNVELG-EKVAQYLID 470 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 470 (569)
.+|..+...+...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788889999999999999 777888775
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.51 E-value=0.00013 Score=68.08 Aligned_cols=231 Identities=11% Similarity=0.016 Sum_probs=145.1
Q ss_pred HHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc-
Q 038890 244 FVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG-AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC- 321 (569)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 321 (569)
..+.+..++|+++++.++... +-+...|+.--.++...| .+++++.+++.+.... +-+..+++.-..++...
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 344455567888888887421 234455666666666667 5888888888888765 55666676666666665
Q ss_pred C-ChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 322 G-CVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGK--------EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 322 g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
+ ++++++++++.+.+. +..+|+.-...+...|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 6 788888888887764 4556666555555555555 888888888876433 66677777666666665
Q ss_pred -------HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-CC---
Q 038890 390 -------VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF--------------------SEAERLIRSM-PM--- 438 (569)
Q Consensus 390 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~--- 438 (569)
++++++.+++..... +-|...|+.+-..+.+.|+. ....+...++ +.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 677777777777544 55677777777777666653 2333333333 11
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCChhHHHHHH
Q 038890 439 ----EPDVFVWGALLGGCQMHGNVELGEKVAQYLI-DLDPLNHAFYVNLC 483 (569)
Q Consensus 439 ----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 483 (569)
.++...+..++..|...|+.++|.++++.+. +.+|-....|...+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2455566666666666666666666666665 45565555554443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=4.6e-07 Score=72.10 Aligned_cols=94 Identities=4% Similarity=-0.033 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-------hHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH-------AFYVN 481 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 481 (569)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888877 4444 567788888888888888888888888888776543 35777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 038890 482 LCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 482 l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888899999998888765
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.2e-06 Score=76.07 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...|+++.+..|.+..++..+..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 366778888899999999999998887 3334 67788999999999999999999999999999999999999999999
Q ss_pred HcCChHHHH-HHHHHHHHCC
Q 038890 488 KAGRFDDVK-KTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~-~~~~~m~~~g 506 (569)
..|+.+++. ..+..|...|
T Consensus 168 ~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 998888877 5566664443
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.51 E-value=1e-05 Score=75.34 Aligned_cols=217 Identities=12% Similarity=0.017 Sum_probs=160.0
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHc-C-ChhH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALN-G-YGKE 357 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~ 357 (569)
...+..++|+.+++.+...+ +-+..+++.-...+...| .+++++.+++.+.. .+..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 44556678999999999886 556677777777777888 59999999998865 3667788877777776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE--------KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL---- 425 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 425 (569)
++..++++.+...+ +...|+.-...+.+.|.++ ++++.++++.+.. +-|...|+....++.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccc
Confidence 99999999876432 5666666555555555555 8889999888655 5678889888888888776
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhcC------CC
Q 038890 426 ---FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV--------------------ELGEKVAQYLIDLD------PL 474 (569)
Q Consensus 426 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~ 474 (569)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 78889888877 4445 677888777777766653 33444444443332 56
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 475 NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.++..|++.|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 788899999999999999999999999864
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=1.6e-06 Score=68.22 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...+..+...+...|++++|.+.++++ .. +.+..++..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999988 33 3467788999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCC
Q 038890 488 KAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g 506 (569)
..|++++|..+++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.5e-06 Score=69.48 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=90.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.+...+..+...+.+.|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999998 5555 67889999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCC
Q 038890 485 MYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|.+.|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.8e-06 Score=67.16 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3566788889999999999999999998 3334 6788899999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=1.2e-06 Score=71.21 Aligned_cols=106 Identities=10% Similarity=-0.077 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|+..|++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345566677788899999999998888544 456788888888999999999999999888 3334 566788888899
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
...|++++|...|+++.+..|.++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999988877665443
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.4e-06 Score=69.74 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=58.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+...+..+...+...|++++|+..|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3445555555666666666666666655 44454 345555666666666666666666666666666666666666
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 038890 484 DMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.5e-06 Score=75.45 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=95.3
Q ss_pred hcCChHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCHH
Q 038890 320 KCGCVERAYG---VFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA----EGVRP-NHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 320 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~~~~~ 391 (569)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332223445566666667777777777777766654 11111 2345666777778888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 038890 392 KGRWCFVMMRHVYLVEP-H----VYHYACMIDILSRAGLFSEAERLIRSM----PMEPD----VFVWGALLGGCQMHGNV 458 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 458 (569)
+|...+++......-.+ + ...+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877664311111 1 345677778888888888888887766 11112 23456777788888999
Q ss_pred HHHHHHHHHHhhc
Q 038890 459 ELGEKVAQYLIDL 471 (569)
Q Consensus 459 ~~a~~~~~~~~~~ 471 (569)
++|.+.++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887764
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.9e-06 Score=73.10 Aligned_cols=127 Identities=10% Similarity=0.083 Sum_probs=101.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH-HHHcCCH--
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI-LSRAGLF-- 426 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 426 (569)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999998887753 3356788888899999999999999999988655 4567788888888 7789998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 427 SEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999988 4444 567888899999999999999999999999999876543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=2.8e-06 Score=71.02 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 44444455555555555555555554431 1133444445555555555555555555554322 23344455555555
Q ss_pred HHcCCHHHHHHHHHhC
Q 038890 421 SRAGLFSEAERLIRSM 436 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~ 436 (569)
...|++++|+..|++.
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 5555555555555544
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=5.2e-06 Score=69.29 Aligned_cols=128 Identities=9% Similarity=-0.107 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 456667777888888999988888887742 2356778888888888999999999998888554 4567788888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 420 LSRAGLFSEAERLIRSM-PMEP-DVFVWG--ALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+...|++++|...+++. ...| +...+. ..+..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999887 3333 444443 334446778889999888887654
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.44 E-value=1.5e-06 Score=70.59 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEPD-------------VFVWGALLGGCQMHGNVELGEKVAQYLIDL------ 471 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 471 (569)
.+......+...|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445555566666777776666665 22222 238888889999999999999999999999
Q ss_pred -CCCChhHH----HHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 472 -DPLNHAFY----VNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 472 -~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+|++..+| ...+.++...|++++|+..|++..+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999764
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.1e-05 Score=72.74 Aligned_cols=126 Identities=10% Similarity=-0.070 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRN-----IFSWNSIITGFVQ 246 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~ 246 (569)
..-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...+.. ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344567788889999999999998876 433355666678888999999999998776532 2367778888999
Q ss_pred CCChHHHHHHHHHchhccccCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 038890 247 GGRAREALELFQEMQSSSVEEMVKP--DKITIASVLSACAYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 303 (569)
.|++++|+..|++.. .....| ..........++.+.|+.++|...|+++....
T Consensus 184 LG~~~eAl~~l~~a~----~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 184 LALFTEAERRLTEAN----DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TTCHHHHHHHHHHHH----TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHh----cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999886 333324 34456667777888999999999999988874
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=2.6e-06 Score=67.73 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=89.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
.+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999988 3334 678889999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g 506 (569)
|.+.|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987753
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=3.6e-06 Score=67.75 Aligned_cols=113 Identities=9% Similarity=-0.155 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALL 449 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 449 (569)
.+...+..+...+...|+++.|...|+...... +.+...|..+..++...|++++|+..+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 356677777888888888888888888887544 455778888888888888888888888887 3334 567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC-----ChhHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPL-----NHAFYVNLCDMY 486 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 486 (569)
.++...|++++|...++++.+..|. +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887766 455555554443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7.3e-06 Score=66.84 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWG 446 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 446 (569)
+...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4456666777777788888888888777742 344 567777888888888888888888877 3334 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
.+..++...|++++|...++++.+..|.+..++..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888999999999999999999999998887777665543
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=2.5e-06 Score=67.88 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHH
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-PMEPD-V---FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMY 486 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 486 (569)
.+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666655 21222 2 355566666667777777777777777777666 55566777777
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 038890 487 AKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (569)
.+.|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777766654
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=9.2e-06 Score=64.44 Aligned_cols=110 Identities=4% Similarity=-0.064 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----EPD----VFVW 445 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 445 (569)
..+..+...+...|+++.|...|+...... +.+...+..+..++...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345555566666667777777666666433 345566666667777777777777776665 11 122 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
..+...+...|++++|.+.++++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777777888888888888888888777 4555555554443
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=6.4e-06 Score=78.96 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=81.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++.++.|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999998 6566 5778999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHH
Q 038890 487 AKAGRFDDVKKT 498 (569)
Q Consensus 487 ~~~g~~~~A~~~ 498 (569)
.+.++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=3.6e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------hhHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN-------HAFYV 480 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 480 (569)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999988 33 3467888999999999999999999999999987766 78899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 481 NLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.++.+|.+.|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998753
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00014 Score=67.51 Aligned_cols=192 Identities=8% Similarity=-0.044 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hhHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--CVERAYGVFKEMPK---KDTLAWTAMISVFALNGY-GKEAFDTF 362 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 362 (569)
++++..+++.+.... +-+..+++.-.-++...| .+++++.+++.+.+ .|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666654 445556655555555555 36677777666653 355566666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc-----
Q 038890 363 REMEAEGVRPNHVTFVGLLSACAHS--------------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA----- 423 (569)
Q Consensus 363 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 423 (569)
+++.+..+. |...|+.....+... +.++++++.+....... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 777765322 444444443333322 34566666666666433 44556665554444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 424 ------GLFSEAERLIRSM-PMEPDV-FVWGALLGG---CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 424 ------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.++++++.++++ ...||. .++..++.. ....|..++....+.++++++|.....|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3456666666666 444443 222222111 113455566667777777777766665555543
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=7.4e-06 Score=62.94 Aligned_cols=101 Identities=11% Similarity=-0.067 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DVFVWGALL 449 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 449 (569)
...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3456667777888888888888888887543 456777888888888999999999888887 3334 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHhhcCCCCh
Q 038890 450 GGCQMH-GNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 450 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..+... |++++|.+.++++.+..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 889999 999999999999999888754
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00023 Score=66.02 Aligned_cols=180 Identities=9% Similarity=0.006 Sum_probs=134.4
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNG--YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL-VEKGRWCF 397 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 397 (569)
+++++.+++.+.. .+..+|+.-...+...| .+++++..++++.+...+ |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5667777776653 47778888877787877 489999999999986433 66777777777777787 68999999
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRA--------------GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH------ 455 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 455 (569)
+.+.+.+ +-|...|+.....+.+. +.++++++.++.. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9999665 56778888777777665 4578899888887 3445 677777665555554
Q ss_pred -----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHH---HHcCChHHHHHHHHHHHHCC
Q 038890 456 -----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMY---AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 456 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g 506 (569)
+.++++++.++++.+..|++...+..++... ...|..+++..++.++.+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999999876655554332 24678889999999997643
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=1.6e-05 Score=63.11 Aligned_cols=103 Identities=15% Similarity=0.021 Sum_probs=75.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV---YHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLG 450 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 450 (569)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|+..|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667788888888888777543 2223 46677778888888888888888877 33333 566777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
++...|++++|...++++.+..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888999999999999999998888776555443
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2.6e-06 Score=84.88 Aligned_cols=118 Identities=7% Similarity=-0.009 Sum_probs=96.9
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV 458 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 458 (569)
...+...|++++|...+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344567889999999999888654 456788899999999999999999999888 4455 577889999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHH--HHHcCChHHHHHHHH
Q 038890 459 ELGEKVAQYLIDLDPLNHAFYVNLCDM--YAKAGRFDDVKKTRN 500 (569)
Q Consensus 459 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 500 (569)
++|++.++++.+..|.+..++..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998888888888 888899999999988
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=4.3e-06 Score=65.73 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=69.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566777788888888888877544 446777778888888888888888888877 4444 56677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCh
Q 038890 455 HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877653
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=1e-05 Score=80.12 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999988 4344 67889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHH-HHHHHHHC
Q 038890 488 KAGRFDDVKK-TRNLMKER 505 (569)
Q Consensus 488 ~~g~~~~A~~-~~~~m~~~ 505 (569)
+.|+++++.+ .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998875 56665433
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1.1e-05 Score=76.28 Aligned_cols=131 Identities=8% Similarity=-0.071 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
+...|..+...+...|++++|+..|++..+...... ...+..+..++.+.|++++|+..++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677778888888899999988888877432211 478888899999999999999999999865
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038890 404 YLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG-EKVAQYLID 470 (569)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 470 (569)
. +.+...|..+..+|...|++++|+..|+++ ...| +...+..+..++...|+.+++ ...++++.+
T Consensus 226 ~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 557888999999999999999999999988 4445 567888888889999999888 445665543
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.8e-06 Score=74.87 Aligned_cols=120 Identities=8% Similarity=-0.079 Sum_probs=88.7
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C----------------HHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-D----------------VFVWG 446 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 446 (569)
...|+++.+.+.|+...... ......+..+...+...|++++|+..|++. ...| + ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34455555555554333211 123455667777888888888888888876 2222 1 26888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+..++...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999999999999999999999999999999987753
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=7.4e-06 Score=65.00 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----EPD----VFVWG 446 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 446 (569)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34445555666666666666666655432 334555666666666666666666666555 11 111 13556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.+..++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6667777778888888888887776654
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=5e-06 Score=69.33 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777777888888888888888888888888888888888888888888888888887664
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=1.3e-06 Score=68.38 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 423 AGLFSEAERLIRSM-PM---EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++..|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666666 33 23 344666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHC
Q 038890 498 TRNLMKER 505 (569)
Q Consensus 498 ~~~~m~~~ 505 (569)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776553
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=1.1e-05 Score=74.11 Aligned_cols=111 Identities=7% Similarity=-0.176 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLG 450 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 450 (569)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677778888889999999999999888544 447788888999999999999999999887 5555 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
++...|++++|...++++.+.+|.++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 89999999999999999998887765444433333
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=8e-06 Score=67.66 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM----PMEPD----VF 443 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 443 (569)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555666666666666555432110011 135666677777777777777777665 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDP------LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++..+...+...|++++|.+.++++.+..+ .....+..++..|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777778888888888888888876421 1245678889999999999999999988764
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=9.2e-06 Score=67.66 Aligned_cols=78 Identities=14% Similarity=0.025 Sum_probs=64.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-hHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH-AFYVNLCDM 485 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 485 (569)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999988 4445 677899999999999999999999999999999988 444444433
Q ss_pred H
Q 038890 486 Y 486 (569)
Q Consensus 486 ~ 486 (569)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.4e-05 Score=75.97 Aligned_cols=162 Identities=4% Similarity=-0.177 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCC-CHhH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHV----TFVGLLSACAHSGLVEKGRWCFVMMRHVY---LVEP-HVYH 412 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 412 (569)
+..++..|...|++++|.+.+..+...- ..++.. ..+.+...+...|+++.+..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555666666666666665544310 111111 12222233344566777766666554211 1111 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----hh
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD---PLN----HA 477 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 477 (569)
+..+...|...|++++|..++++. ..++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777777665 1122 23466677777777888888887777776532 221 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666777777877777666553
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=3.7e-05 Score=76.05 Aligned_cols=124 Identities=12% Similarity=-0.002 Sum_probs=99.9
Q ss_pred HHHccCCHHHHHHHHHHhHHhcC--CCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYL--VEP----HVYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FVWG 446 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 446 (569)
.+...|++++|+.++++..+... +.+ ...+++.|..+|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998887764332 122 2467899999999999999999998876 345554 5899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLID-----LDPLNHAF---YVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|...|..+|++++|+.+++++.+ .+|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 56777655 4578888999999999999999997653
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=2.9e-05 Score=77.25 Aligned_cols=115 Identities=8% Similarity=-0.055 Sum_probs=49.0
Q ss_pred HHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 393 (569)
.+.+.|++++|.+.|++..+ .+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555554332 234444555555555555555555555554431 11233444444445555555555
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDI--LSRAGLFSEAERLIR 434 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 434 (569)
...|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544322 1122233333333 444445555554444
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00013 Score=73.93 Aligned_cols=168 Identities=9% Similarity=-0.064 Sum_probs=130.5
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNGY----------GKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG-- 388 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 388 (569)
.++|++.++.+.. .+..+|+.-..++...|+ +++++..++.+.+...+ +...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3455666665543 234556655555555555 78899999998876433 5677887777788888
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG-LFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH---------- 455 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 455 (569)
++++++..++++.+.. +-+..+|+....++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999999765 567888988888888888 899999999988 5555 677888887776663
Q ss_pred ----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 456 ----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 456 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888555
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1e-05 Score=76.63 Aligned_cols=147 Identities=9% Similarity=-0.066 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
...+..+...+...|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666667777778888888888877663 343321 22333333332221 1 136788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH-HHcCChHHH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY-AKAGRFDDV 495 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 495 (569)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.++.|.+..++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 4444 6778899999999999999999999999999999988888888773 445677888
Q ss_pred HHHHHHHHHC
Q 038890 496 KKTRNLMKER 505 (569)
Q Consensus 496 ~~~~~~m~~~ 505 (569)
..+|++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888654
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=6.4e-06 Score=64.29 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHhHHhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYL-VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777777663210 0223466777777888888888888888777 3334 56677778888888888888888
Q ss_pred HHHHHhhcCCCChhHH
Q 038890 464 VAQYLIDLDPLNHAFY 479 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~ 479 (569)
.++++.+..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888876543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.7e-05 Score=64.30 Aligned_cols=132 Identities=10% Similarity=-0.016 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----Hh
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVR-PN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VY 411 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 411 (569)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665432100 11 135666667777778888887777776542211111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+..+..++...|++++|...+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777888888888888877766 1111 13466777788888999999999988887643
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=9.8e-05 Score=72.62 Aligned_cols=205 Identities=8% Similarity=-0.100 Sum_probs=134.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN----------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV 410 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 410 (569)
..+...|++++|++.|..+.+...... ...+..+...|...|++++|...+..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776432211 1246778899999999999999999887544322332
Q ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------
Q 038890 411 ----YHYACMIDILSRAGLFSEAERLIRSM-------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLD------ 472 (569)
Q Consensus 411 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 472 (569)
.+.+.+...+...|++++|..+++.. +..+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23334444555678999999888776 33333 4578889999999999999999999987631
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHh
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKN 552 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (569)
+....++..++..|...|++++|..++++..........|......+. .....-+...+...++...+.+..+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD---LMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH---HHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 233567889999999999999999999988543211100110000000 00001123445677777777666665555
Q ss_pred CC
Q 038890 553 GG 554 (569)
Q Consensus 553 ~g 554 (569)
.+
T Consensus 249 ~~ 250 (434)
T 4b4t_Q 249 LT 250 (434)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=4.5e-05 Score=55.94 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=65.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777788888888888888888877 3333 5677888888888999999999999999999999888888888887
Q ss_pred HHcC
Q 038890 487 AKAG 490 (569)
Q Consensus 487 ~~~g 490 (569)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=4.1e-05 Score=57.58 Aligned_cols=65 Identities=26% Similarity=0.241 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788899999999999999999999999999999999999999999999999999999988764
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=2.2e-05 Score=74.27 Aligned_cols=152 Identities=9% Similarity=-0.070 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS 387 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 387 (569)
...+..+...+.+.|++++|...|++....++... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788899999999999999988654222111 1122233333332221 23677888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 038890 388 GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGG-CQMHGNVELGEKV 464 (569)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~~~ 464 (569)
|++++|+..++...+.. +.+...|..+..+|...|++++|+..|++. ...|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998644 457788999999999999999999999998 666643 455555544 2345667888899
Q ss_pred HHHHhhcCCCCh
Q 038890 465 AQYLIDLDPLNH 476 (569)
Q Consensus 465 ~~~~~~~~p~~~ 476 (569)
|+++.+..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998887754
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.9e-05 Score=60.68 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hhHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN------HAFYV 480 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 480 (569)
+...+..+...+...|++++|+..|++. ...| +...+..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888887 3334 67788888999999999999999999999999988 77778
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 038890 481 NLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~ 500 (569)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887776665544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=3.4e-05 Score=62.56 Aligned_cols=103 Identities=9% Similarity=-0.059 Sum_probs=71.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCC----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLV----------EPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-------EPD 441 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~ 441 (569)
....+...|++++|+..|++..+...- +.+...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 334444555555555555555432210 001237788888888888888888877776 44 775
Q ss_pred H-HHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 442 V-FVW----GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 442 ~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
. ..| .....++...|++++|+..|++++++.|.+...+..+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4 577 8899999999999999999999999998876554433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=8.6e-05 Score=57.44 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 428 EAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 428 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+|+..|++. ...| +...+..+...+...|++++|+..++++.+.+|.+..++..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556655 4444 56788888888889999999999999999999998889999999999999999999999888664
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=6.5e-05 Score=71.93 Aligned_cols=66 Identities=8% Similarity=-0.028 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456888899999999999999999999999999999999999999999999999999999987753
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=0.00023 Score=70.47 Aligned_cols=123 Identities=8% Similarity=-0.081 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++.+.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677777888888888888888888876322111 4778888899999999999999999998654
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
+.+...|..+..+|...|++++|+..|+++ .+.|+ ...+..+..++...++.+++.+
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888999999999999999999999998 66664 4577888888888888877664
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=1.9e-05 Score=63.87 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=63.0
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 422 RAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN----------VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+.+.+++|+..++.. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555555 2233 44555555555555444 57999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHHCC
Q 038890 490 G-----------RFDDVKKTRNLMKERG 506 (569)
Q Consensus 490 g-----------~~~~A~~~~~~m~~~g 506 (569)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998854
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=0.00077 Score=68.29 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=123.8
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 351 LNG-YGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGL----------VEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 351 ~~g-~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
..| ..++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+.. +.+..+|..-..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344 446889999999985 444 4556665555656666 899999999999665 667889999999
Q ss_pred HHHHcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc----
Q 038890 419 ILSRAG--LFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA---- 489 (569)
Q Consensus 419 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 489 (569)
++.+.| +++++++.++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 999999 779999999999 4444 7889998888888999 899999999999999999999999999988874
Q ss_pred ----------CChHHHHHHHHHHHHC
Q 038890 490 ----------GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 ----------g~~~~A~~~~~~m~~~ 505 (569)
++++++.+++++....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh
Confidence 5678999988887654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00027 Score=69.81 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=84.7
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hHHH
Q 038890 419 ILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AFYV 480 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 480 (569)
.+...|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|++| ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23343 35899999999999999999999999886 456655 4588
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 038890 481 NLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (569)
.|+.+|...|++++|..++++..+--.. .-...||...++..++.+...++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988542111 012346666666666666554443
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.70 E-value=0.00031 Score=51.57 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 439 EPDVFVWGALLGGCQMHGN---VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
++|...+..+..++...++ .++|..+++++.+.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577788888888765555 699999999999999999999999999999999999999999999886543
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=5.5e-05 Score=61.17 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL----------FSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
.+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345566666666666443 4456666666666666554 35777777777 5555 45677777777776
Q ss_pred c-----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 455 H-----------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 455 ~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
. |++++|++.|+++++++|++......+- ..++|.++.-.+...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 6 4899999999999999999865444332 33455565555544443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00018 Score=54.99 Aligned_cols=67 Identities=13% Similarity=-0.011 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
++...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788889999999999999999999999999999999999999999999999999999998643
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.00071 Score=54.21 Aligned_cols=90 Identities=7% Similarity=-0.212 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH---
Q 038890 416 MIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK--- 488 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 488 (569)
|...|...+.+++|.++|++.-..-+...+..|...|.. .+++++|.+.|+++.+. .++.++..|+..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444444444444111244444445555544 55666666666666554 345566666666666
Q ss_pred -cCChHHHHHHHHHHHHCCC
Q 038890 489 -AGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 489 -~g~~~~A~~~~~~m~~~g~ 507 (569)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6667777777766666654
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00062 Score=66.21 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hH
Q 038890 417 IDILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AF 478 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 478 (569)
+..+.+.|++++|+.++++. ...|+ ..+++.+..+|...|++++|+.+++++++ .+|.+| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999988766 11232 35889999999999999999999999886 445554 45
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (569)
++.|+..|...|++++|..++++..+--. ..-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998864211 1112358888888888888777765
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00044 Score=53.32 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=53.5
Q ss_pred HHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 393 GRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 393 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+...|+...+.. +.+...+..+..+|...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555322 345666777777777777777777777766 3333 456777777777788888888888888777
Q ss_pred cCCC
Q 038890 471 LDPL 474 (569)
Q Consensus 471 ~~p~ 474 (569)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.56 E-value=1.5e-06 Score=82.07 Aligned_cols=369 Identities=9% Similarity=0.044 Sum_probs=224.9
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhH
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFV 174 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 174 (569)
.+..|+.+..+.+..+... +|++.|-+. -|+..|..++.++.+.|.++.-.+++....+..- ++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~------eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVK------EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCT------TTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTT
T ss_pred CccHHHHHHHHHHccCchH------HHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--cccc
Confidence 5678889999999998888 776655322 3777899999999999999999999887776543 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----------------------- 231 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 231 (569)
=+.|+-+|++.|++.+..+++ ..||......+.+-|...|.++.|.-+|..+..
T Consensus 119 DteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999976644332 227776677788889999999999888877642
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 -RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
.++.||..+..+|...+.+.-|.-.--.+. +.|| ....++..|...|.+++.+.+++...... .....+
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-------vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc-------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 366789999999999988876654433333 1111 22334556777788888777777665322 456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----C-------ChhHHHHHHHHHHHcCChhHHHHHHH-------------HHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPK----K-------DTLAWTAMISVFALNGYGKEAFDTFR-------------EME 366 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~-------------~m~ 366 (569)
|+.|.-.|++- ++++..+.++..-. | ....|.-++-.|..-.+++.|....- +..
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 78777777765 56666665554432 1 44567777777877777776654321 000
Q ss_pred HCCCCCCHHHH---------------HHHHHHHHccCCHHHHHHHHHHhHHhcCCC---------CCHhHHHHHHHHHHH
Q 038890 367 AEGVRPNHVTF---------------VGLLSACAHSGLVEKGRWCFVMMRHVYLVE---------PHVYHYACMIDILSR 422 (569)
Q Consensus 367 ~~~~~p~~~~~---------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~ 422 (569)
.. ..+...| +-|+.++...=|..++.++|++.-.-.-++ .+..+=.++-+.|..
T Consensus 345 ~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 345 TK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp GG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 00 1122222 334444444444445555554322111011 123333456667777
Q ss_pred cCCHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------Hhh--cCCCChhHHHHH
Q 038890 423 AGLFSEAERLIRSM------------PMEPDVFVWGALLGGCQMHGNVELGEKVAQY------LID--LDPLNHAFYVNL 482 (569)
Q Consensus 423 ~g~~~~A~~~~~~~------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~--~~p~~~~~~~~l 482 (569)
..+++.-..-.+.. ...+-...-..-...|.+.+++++++.+.++ +.+ ....++.....|
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHH
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHH
Confidence 77776655544333 1122222233334456677777777654432 222 123345555666
Q ss_pred HHHHHHcCChH
Q 038890 483 CDMYAKAGRFD 493 (569)
Q Consensus 483 ~~~~~~~g~~~ 493 (569)
++-+...|+.+
T Consensus 503 L~yFv~~g~~E 513 (624)
T 3lvg_A 503 LQWFLQEEKRE 513 (624)
T ss_dssp HHHHHHHCSTH
T ss_pred HHHHHHcCchH
Confidence 66666666544
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.00041 Score=50.58 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345778888899999999999999999999999999999999999999999999999999987753
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=0.00039 Score=67.54 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hHHHHHHH
Q 038890 423 AGLFSEAERLIRSM---------PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AFYVNLCD 484 (569)
Q Consensus 423 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 484 (569)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ .+|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888877765 233443 5889999999999999999999999886 455555 45889999
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 038890 485 MYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~ 504 (569)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998854
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.47 E-value=0.0013 Score=52.62 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 439 EPDVFVWGALLGGCQMHG---NVELGEKVAQYLIDLD-P-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.++..+...+..++.+.+ ++++++.+++...+.+ | .+...+..|+-+|.+.|++++|.++++.+.+. .|
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP---- 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EP---- 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CT----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC----
Confidence 356677777777777766 5557777777777766 5 34666777777778888888888888777662 22
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
....+..+.+.+.+.+++.|.+
T Consensus 103 ---------------------~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 103 ---------------------QNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------------CCHHHHHHHHHHHHHHHHhhHH
Confidence 2345566666666777777654
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0034 Score=50.17 Aligned_cols=113 Identities=10% Similarity=-0.191 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSE 428 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 428 (569)
+++++|+.+|++..+.| .|+.. +...|...+.+++|..+|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999998887 33444 666777778888999999998852 467788888888988 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 474 (569)
|..+|++.-..-+...+..|...|.. .++.++|...++++.+.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999988223467788888888888 88999999999999987643
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.33 E-value=0.0088 Score=45.74 Aligned_cols=141 Identities=10% Similarity=0.055 Sum_probs=103.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+...|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34567777888887777653 245566666666666667777777777666544321 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
....+-.++ .+.......+..+..+|.-++-.+++..+....++++.....++.+|.+.|+..+|.+++.+..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 245556777888889999999999999988888888999999999999999999999999999999986
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.0008 Score=50.33 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=47.7
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
.+...+..+..+|...|++++|+..|++. ...| +...|..+..++...|++++|++.+++++++.|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35566777777777788888888877776 3333 455777777788888888888888888777654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.0014 Score=48.63 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=29.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVF-VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
..+.+.|++++|+..|++. ...| +.. .+..+..++...|++++|++.|+++.+.+|.+..++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444455555555555544 2222 333 444444455555555555555555555555544433
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0033 Score=60.96 Aligned_cols=95 Identities=12% Similarity=-0.067 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYL--VEPH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FVWGALL 449 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 449 (569)
..|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888887664321 2222 367889999999999999999998877 345654 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----cCCCChhHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLID-----LDPLNHAFYV 480 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 480 (569)
..|..+|++++|+.+++++.+ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999886 5688775543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0061 Score=59.21 Aligned_cols=101 Identities=11% Similarity=-0.101 Sum_probs=78.2
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYL--VEPH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FV 444 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 444 (569)
+..+.+.|++++|...+++..+... +.|+ ..+++.++.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456677899999999988764321 1222 467889999999999999999998877 344544 57
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLID-----LDPLNHAFYVN 481 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 481 (569)
++.|...|..+|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999886 57887765443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.07 E-value=0.0041 Score=46.02 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=28.6
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVY-HYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
..+...|++++|...|+.+.+.. +.+.. .+..+..+|...|++++|+..|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455556666666665555332 23344 5555555555566666666555555
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.021 Score=53.20 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..+|..+...+...|++++|...++++.+++| +...|..++..+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444555444444444555555555555555553 234445555555555555555555555544
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.011 Score=44.38 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-----P----MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
+..-+..+...+.+.|++..|...|+.. + -.+...++..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777777777777777665 1 123456888899999999999999999999999999998776
Q ss_pred HHHH
Q 038890 480 VNLC 483 (569)
Q Consensus 480 ~~l~ 483 (569)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.2 Score=53.37 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=101.7
Q ss_pred HHHccCCcHHHHH-HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 038890 146 ECTKRLDGLVGAS-VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 146 ~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
.....++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+. . ..-.......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHH
Confidence 3445678887766 4411 11 122336777888889999998877532 1 122344567899999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 225 LFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
+.+.+. +...|..+...+.+.|+++.|.+.|..+. . |..+...+...++.+....+-+.....|
T Consensus 674 ~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~----d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH----D---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT----C---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc----C---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 987774 55789999999999999999999999885 1 3344555555777776666655555544
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
-++....+|.+.|++++|.++|.+
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHH
Confidence 123444556667777777766543
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.73 E-value=0.023 Score=52.91 Aligned_cols=139 Identities=12% Similarity=-0.019 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHHHH--HcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc---cC-CH-HHHH---HHHHHhH
Q 038890 336 KKDTLAWTAMISVFA--LNG---YGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAH---SG-LV-EKGR---WCFVMMR 401 (569)
Q Consensus 336 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~-~~-~~a~---~~~~~~~ 401 (569)
..+...|...+.+.. ..+ +..+|+.+|++..+. .|+ ...+..+..++.- .+ .. .... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 347778888876643 333 357899999999984 565 3455555555542 11 11 1111 1222211
Q ss_pred HhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 402 HVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
....-+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11222567788888888888889999999999999 5558888888888999999999999999999999999865
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.65 E-value=0.011 Score=43.09 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 407 EPHVYHYACMIDILSRAGL---FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
+.++..+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|+..|+++.+.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777777777765554 68888888887 4455 56777778888889999999999999999988884
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.095 Score=55.90 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=98.9
Q ss_pred HHHHhCCChHHHHH-HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 242 TGFVQGGRAREALE-LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 242 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+.- ..-......
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i----------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~ 664 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV----------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALK 664 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC----------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC----------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhh
Confidence 34456788888876 44221 21223366777778888888877665321 111344567
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
.|+++.|.++.+.+. +...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++-+..
T Consensus 665 ~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 665 VGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 899999999987764 567899999999999999999999988653 334444455566766655554444
Q ss_pred HHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 401 RHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
.. .| -++....+|.+.|++++|++++.++
T Consensus 734 ~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 42 21 1233444556667777776666655
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.60 E-value=0.022 Score=43.69 Aligned_cols=65 Identities=6% Similarity=-0.132 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 440 PDVFVWGALLGGCQMHGNVEL---GEKVAQYLIDLD-P-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
|+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555555555555554443 666666655554 3 2344455566666666666666666666655
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.54 E-value=0.012 Score=47.00 Aligned_cols=89 Identities=15% Similarity=-0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG---LFSEAERLIRSM-PME-P--DVFVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 462 (569)
...+.+.|.+.... + +++..+...+..++++.+ +.++++.+|++. ... | +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555554432 2 366777777777777777 555777777776 223 4 3456677788889999999999
Q ss_pred HHHHHHhhcCCCChhHHH
Q 038890 463 KVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~ 480 (569)
+.++.+.+.+|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999876544
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.014 Score=52.09 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHc-CChHH
Q 038890 426 FSEAERLIRSM-PMEPD---VFVWGALLGGCQM-----HGNVELGEKVAQYLIDLDPLN-HAFYVNLCDMYAKA-GRFDD 494 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 494 (569)
...|...+++. .+.|+ ...|..+...|.. .|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666666 66676 4578888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHHCCCCC
Q 038890 495 VKKTRNLMKERGIRK 509 (569)
Q Consensus 495 A~~~~~~m~~~g~~~ 509 (569)
|.+++++......+.
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999877763
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.15 Score=41.73 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566777776666554 3456677777777777777777777765432 23333344455666555444
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (569)
-+.... .| -++....++.-.|+++++.++|.+.+.
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 443332 11 134445555566777777777776653
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.20 E-value=0.2 Score=39.02 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCce
Q 038890 439 EPDVFVWGALLGGCQMHGNV---ELGEKVAQYLIDLDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGC 514 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 514 (569)
.|+..+-..+..++.++.+. .+++.+++.+.+..|. .......|+-++.+.|++++|.++.+.+.+. .|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP----- 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ER----- 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CC-----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CC-----
Confidence 56666666677777766644 4677777777776664 4455666777888888888888888887763 22
Q ss_pred eEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 515 SSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
....+.++-..+.+.|...|.+
T Consensus 109 --------------------~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 109 --------------------NNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHTTTT
T ss_pred --------------------CcHHHHHHHHHHHHHHHHhchh
Confidence 3346666666777777777754
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.11 E-value=0.039 Score=41.24 Aligned_cols=65 Identities=9% Similarity=-0.145 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDL-------DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+..-+..+...+...|+++.|...++.+.+. ++....++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5556678889999999999999999999874 2345678999999999999999999999999773
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.00 E-value=1.6 Score=44.26 Aligned_cols=306 Identities=8% Similarity=-0.052 Sum_probs=143.2
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-hHHHHHHHHHHhcCCHHHHHHH
Q 038890 148 TKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDV-VSWNAMIIGYLRSGDLDVALDL 225 (569)
Q Consensus 148 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~ 225 (569)
.+.|++..+..+...+....+. .-..|..+.... .....++...++.+-.. |-. ..-+..+..+.+.+++...+..
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 4567777776665544221111 112232222111 22356677777766554 211 2234456667778888888886
Q ss_pred HHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH--HHHHHHHHHHhC
Q 038890 226 FRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH--GKWVHGYLRRSG 303 (569)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~ 303 (569)
+.. ...+...--....+....|+..+|......+- ..| ...+..+..++..+.+.|.+.. ...=+..+...|
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW----~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW----LTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH----SCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 665 32233333345566777888877777777764 222 2334455666666665553322 111111222211
Q ss_pred -----------CCCcch-hHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 304 -----------LDCDVV-IGTALVDMYGKCGCVERAYGVFKEMPKKDTL---AWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 304 -----------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
++++.. ....++..+. +...+........ ++.. .+...+.-+.+ .+.+.|...|......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 111111 1111111111 1122222222211 1111 11111222222 3667777777776543
Q ss_pred CCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CH
Q 038890 369 GVRPNHVT----FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP--DV 442 (569)
Q Consensus 369 ~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~ 442 (569)
+ ..+... ...+.......+...++...+..... . ..+.....-.+....+.|+++.|...|+.|...+ ..
T Consensus 244 ~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 244 Q-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp T-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred c-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccH
Confidence 2 122221 22222233344424445555554332 1 2333333334444456688888888888873332 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.-..=+..++...|+.++|..+|+.+.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3233345566677888888888877764
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.74 E-value=2.5 Score=44.63 Aligned_cols=410 Identities=11% Similarity=0.032 Sum_probs=206.4
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
-+.+.+++..+. .+.+..+..++.+-++.+.+.++|..+... .+. .+...+.-.+.+. ++-.--.
T Consensus 218 Lr~l~~Iy~k~~-------~~dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~---l~ayQiAFdL~~~--~~Q~fL~ 282 (963)
T 4ady_A 218 LRKSFDFLMNMP-------NCDYLTLNKVVVNLNDAGLALQLFKKLKEE---NDE---GLSAQIAFDLVSS--ASQQLLE 282 (963)
T ss_dssp HHHHHHHHHHSS-------SCCHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHH--SCHHHHH
T ss_pred HHHHHHHHHhCC-------chhHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccH---HHHHHHHHHHhcc--cchHHHH
Confidence 344555555441 357778888888999999999999998752 244 4555555555554 3322222
Q ss_pred HHhhcCC-----------CCC---cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-Cc--ccHHHHHHHHH
Q 038890 86 NVFSHIK-----------RSD---LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DC--LTFPFLLKECT 148 (569)
Q Consensus 86 ~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~--~~~~~ll~~~~ 148 (569)
.+.+.+. -.+ ...|..++ .+.+..+ ..+++.+... +.+ +. .+-.++.+++.
T Consensus 283 ~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL---~~~n~~d--------~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~ 350 (963)
T 4ady_A 283 ILVTELTAQGYDPALLNILSGLPTCDYYNTFL---LNNKNID--------IGLLNKSKSS-LDGKFSLFHTAVSVANGFM 350 (963)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHH---HHHCCCC--------HHHHHHHHHH-SCTTSHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhHHHHHHhCCCChHHHHHHHH---Hhccccc--------hhhHHHHHhh-hcchhhHHHHHHHHHHHHH
Confidence 2211111 012 23333333 3333333 3344444321 222 11 13334556666
Q ss_pred ccCCcHHH-HHH-HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChh--HHHHHHHHHHhcCCHH
Q 038890 149 KRLDGLVG-ASV-YGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----RDVV--SWNAMIIGYLRSGDLD 220 (569)
Q Consensus 149 ~~~~~~~a-~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~ 220 (569)
..|-.... ... .+++-+ . .+....-....-+....|+.++++.++..... .+.. .-..+.-+....|..+
T Consensus 351 naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~ 428 (963)
T 4ady_A 351 HAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR 428 (963)
T ss_dssp TTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH
T ss_pred hCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH
Confidence 66533221 111 122222 1 11112222233356678899999999888765 1222 2233444556666666
Q ss_pred HHHHHHHhcCC-CC--------h--hHHHHHHHHHHhCCC-hHHHHHHHHHchhccccCCCCccHHHHH--HHHHHHHcc
Q 038890 221 VALDLFRRMKK-RN--------I--FSWNSIITGFVQGGR-AREALELFQEMQSSSVEEMVKPDKITIA--SVLSACAYL 286 (569)
Q Consensus 221 ~A~~~~~~~~~-~~--------~--~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~p~~~~~~--~ll~~~~~~ 286 (569)
++..++..... .+ . ..-.++.-+++-.|. -+++.+.+..+.. ... +...... .+...+...
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~---dd~--~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLY---NDS--ATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh---cCC--HHHHHHHHHHHhhhhccc
Confidence 77776665432 22 1 112233334444443 2456666666652 111 1111122 233345567
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChh-HHH---HHHHHHHHcCChhHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-KDTL-AWT---AMISVFALNGYGKEAFDT 361 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~ 361 (569)
|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.. .++. -|. ++..+|+..|+.....++
T Consensus 504 gn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L 582 (963)
T 4ady_A 504 GKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRL 582 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88888888887776532 22222222333334466777777766666542 2332 232 334566778888777778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCC
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF-SEAERLIRSMPMEP 440 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p 440 (569)
+..+.... ..+......+.-++...|+.+.+.++++.+.+.. .|.+..-..+.-+....|.. .+|++++..+-..+
T Consensus 583 L~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 583 LHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 88887642 2233333333344555667666777777666322 34443333444444444443 67778888884455
Q ss_pred CHHHHHHHHHHHH
Q 038890 441 DVFVWGALLGGCQ 453 (569)
Q Consensus 441 ~~~~~~~l~~~~~ 453 (569)
|..+-...+.++.
T Consensus 660 d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 660 VDFVRQAAMIALS 672 (963)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6655444444433
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.72 E-value=0.0086 Score=57.12 Aligned_cols=239 Identities=11% Similarity=0.068 Sum_probs=163.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL 143 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 143 (569)
.++..|..++... |.+.+|..-| ++..|+..|..+|.+..+.|.++ .-+..+...++.. -++..=+.|
T Consensus 55 ~VWs~LgkAqL~~--~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~e------dLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 55 AVWSQLAKAQLQK--GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWE------ELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCSSSHHHHTTTS--SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCT------THHHHHHTTSTTC--CSTTTTHHH
T ss_pred cHHHHHHHHHHcc--CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHh--cccccHHHH
Confidence 6788899999888 8888887755 33467888999999999999999 8888887777653 455566788
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----------------------- 200 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 200 (569)
+-+|++.+++.+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+..
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876544443 235665566778888888888888888776642
Q ss_pred -CChhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHH
Q 038890 201 -RDVVSWNAMIIGYLRSGDLDVALDLFRR-MKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIAS 278 (569)
Q Consensus 201 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ 278 (569)
.++.||-.+-.+|...+.+.-|.-.--. +..++. ...++..|-..|.+++.+.+++.-.. --......|+-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglg-----lErAHmGmFTE 268 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTE 268 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT-----STTCCHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC-----CCchhHHHHHH
Confidence 4778999999999999988776544222 222211 12345567788888888888887641 12456777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hCCC------CcchhHHHHHHHHHhcCChHHHHH
Q 038890 279 VLSACAYLGAIDHGKWVHGYLRR-SGLD------CDVVIGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 279 ll~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 329 (569)
|.-.|++-. +++..+.++..-. .+++ -....|..++-.|..-.++|.|..
T Consensus 269 LaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777777653 3333333332211 2222 134567778888888888886654
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.50 E-value=0.23 Score=44.29 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=84.8
Q ss_pred CChhHHHHHhhcCCCCC--cccHHHHHHHH-hc--CCCCCCCCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHc-
Q 038890 79 GSLSYATNVFSHIKRSD--LYTYNIMIRAN-AC--KSSETNDTHSGKCLKLYKQMLCTGISPD---CLTFPFLLKECTK- 149 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~--~~~~~~li~~~-~~--~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~- 149 (569)
|+...-.+.+......+ ...|..++.+- +. .|++..-.....|...+++.++ +.|+ ...|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 44444455555555433 35677776533 33 3666555556678888888888 5576 4467777777877
Q ss_pred ----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHhhcCC
Q 038890 150 ----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMAC-GFVTSARMLFDEMSN 200 (569)
Q Consensus 150 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 200 (569)
.|+.++|...|++.++.++.-+..++......++.. |+.+.+.+.+++...
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 499999999999999987643466777788888874 899999999988765
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.49 E-value=0.13 Score=39.31 Aligned_cols=90 Identities=14% Similarity=-0.077 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE---AERLIRSM-PME-P--DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 461 (569)
....+.+-|...... | .++..+-..+..++++...... ++.++++. ... | .......|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444555544422 2 3666676777777777776655 77777766 322 4 234566677789999999999
Q ss_pred HHHHHHHhhcCCCChhHHH
Q 038890 462 EKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~ 480 (569)
.+.++.+.+.+|.|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999999876654
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.39 E-value=0.057 Score=42.45 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
+|.++|.++|+.+++....-..+|...++.-.+.|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55556666666655543333445555555555566666666666655554433
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.28 E-value=0.58 Score=35.99 Aligned_cols=146 Identities=11% Similarity=-0.023 Sum_probs=92.9
Q ss_pred HHHHHHH--HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhc
Q 038890 140 FPFLLKE--CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMIIGYLRS 216 (569)
Q Consensus 140 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~ 216 (569)
...|+.+ ..-.|..++..++..+..+.. +..-+|=++--....-+-+-..++++.+-+ -|. ...
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hhh
Confidence 3344443 445677777777777776653 233333333333344445555555555433 111 124
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 217 GDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 217 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
|+.......+-.+.. +.......+.....+|+-++-.+++..+. ...+|++...-.+..+|.+.|+..++..++
T Consensus 75 ~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l-----~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREIL-----KNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHh-----ccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 444555555544432 33455667788889999999999999863 245788888889999999999999999999
Q ss_pred HHHHHhCC
Q 038890 297 GYLRRSGL 304 (569)
Q Consensus 297 ~~~~~~~~ 304 (569)
.++-+.|+
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 99988885
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.94 E-value=0.22 Score=38.35 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 439 EPDVFVWGALLGGCQMHGNV---ELGEKVAQYLIDLDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.|+..+-..+..++.+..+. .+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555555555433 3566666666665553 344555666666677777777766666654
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.67 E-value=1.5 Score=35.90 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHG 292 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 292 (569)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHHHH
Confidence 33455555555555544 2445566666666666666666666666541 22333334445555555
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
..+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44444443333 12333344455566666666665544
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.98 Score=46.69 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.-|...|+++-|+++.+++...-|.+..+|..|+.+|.+.|+|+.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34667899999999999999999999999999999999999999999999987
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.87 E-value=1.8 Score=34.13 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 424 GLFSEAERLIRSM---PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 424 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
++.++|.++|+.+ ..+- ...|.....--.++|+...|.+++.+++...|.....+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5666666666666 1111 556666666667788888888888888888877665554444
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.80 E-value=0.37 Score=45.96 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
...++..+...|+++++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+... +.|+.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34566677788999999999999999999998899999999999999999999988874 4588876
No 243
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.56 E-value=5.3 Score=33.29 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQ--MHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
+++...|... ..+.|+.-...-+.-.. ..++...+.++|..|.. ++......|...+..+...|++.+|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444 34456553333333222 24557788899998876 5566788899999999999999999999999
Q ss_pred HHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcc
Q 038890 502 MKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIR 560 (569)
Q Consensus 502 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 560 (569)
-.+.+-+|- ++..+...+....|.+.+.+.|..
T Consensus 141 GI~~~A~P~--------------------------~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 141 GAENNCRPY--------------------------NRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHTTCBSH--------------------------HHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHcCCccH--------------------------HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 888887763 355666666677788877754444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.62 E-value=5 Score=44.42 Aligned_cols=163 Identities=6% Similarity=0.016 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
.++..+...+..+.+.++..-... +...-..+..+|...|++++|...|.+.. .++..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-----~~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-----LVLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CSCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hhhcccchhh----------h
Confidence 345555666666666665544443 33333456667777788888888877752 2222111000 0
Q ss_pred CHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChHHHHHHHhhC----CCCCh----hHHHHHHHHHHHcCChhH
Q 038890 288 AIDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVERAYGVFKEM----PKKDT----LAWTAMISVFALNGYGKE 357 (569)
Q Consensus 288 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~ 357 (569)
.... +..+..... ..-..-|..++..+.+.|.++.+.++-... ...+. ..|..+...+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 001111100 111234667777788888877777665432 22221 257888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEK 392 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 392 (569)
|...+-.+..... -...+..|+..++..|..+.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9999988766433 34567777777776666543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.42 E-value=2 Score=34.53 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH-HH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-------YHYACMIDILSRAGLFSEAERLIRSM----PMEPDV-FV 444 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~ 444 (569)
+..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++. ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666777777776666554332222331 24455666666777777777766664 111110 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
...+ .. ...... - ...+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 103 ~~~~-~~---~ss~p~-------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPST-GN---SASTPQ-------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc-cc---cCCCcc-------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0000 00 000000 0 001223356667899999999999999999864
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.15 E-value=12 Score=36.11 Aligned_cols=180 Identities=9% Similarity=0.078 Sum_probs=115.8
Q ss_pred CChHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH----cc
Q 038890 322 GCVERAYGVFKEMPK-----K----DTLAWTAMISVFALNGYGKEAFDTFREMEAE-GVRPNHVTFVGLLSACA----HS 387 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~----~~ 387 (569)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+... |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678888887755432 1 3455777888999999999998888766543 33222 2233333332 22
Q ss_pred CCHH--HHHHHHHHhHHhc--CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHH
Q 038890 388 GLVE--KGRWCFVMMRHVY--LVEP---HVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPD---VFVWGALLGGC 452 (569)
Q Consensus 388 ~~~~--~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~ 452 (569)
...+ .-..+.+.+.... .+-. .......|...+...|++.+|..++.++ +..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 2222333222111 0111 1234467889999999999999999987 32222 24666677889
Q ss_pred HhcCCHHHHHHHHHHHhh---cCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLID---LDPLN----HAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
...+|+.+|..+++++.. ..+++ ...+...+..+...++|.+|-+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999753 22322 3457788888999999999988777664
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.96 E-value=5.7 Score=30.95 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=52.9
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFS---EAERLIRSM-PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.|+..+--.+..++++....+ +++.++++. ...| .......|.-++.+.|+++.|.++.+.+.+.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666777777766544 456666665 2233 2345566777899999999999999999999999876543
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.27 E-value=3.8 Score=31.50 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=50.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFS---EAERLIRSM-PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.|++.+--.+..++++....+ +++.++++. ...| ....+..|.-++.+.|+++.|.+..+.+.+.+|.|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 456666666666677666543 456666655 2234 2446666777888999999999999999999998876543
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.14 E-value=15 Score=35.52 Aligned_cols=189 Identities=10% Similarity=0.061 Sum_probs=118.3
Q ss_pred CCChHHHHHHHHHchhcc-ccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHH----HHHHhc
Q 038890 247 GGRAREALELFQEMQSSS-VEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALV----DMYGKC 321 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 321 (569)
.|+++.|++.+..+.+.. ..............++..|...++++...+.+..+.+..-.. ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378899998888877431 122344567778889999999999999888777665432222 12222333 333333
Q ss_pred CChH--HHHHHHhhCCC---C-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCC---HHHHHHHHHHH
Q 038890 322 GCVE--RAYGVFKEMPK---K-------DTLAWTAMISVFALNGYGKEAFDTFREMEA--EGVRPN---HVTFVGLLSAC 384 (569)
Q Consensus 322 g~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~---~~~~~~ll~~~ 384 (569)
...+ .-..+.+.+.. . .......|...+...|++.+|..++.++.. .|..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 23334443332 1 112345677888889999999999998864 232222 13556667888
Q ss_pred HccCCHHHHHHHHHHhHHh-cCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 385 AHSGLVEKGRWCFVMMRHV-YLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
...+++.+|..++.++... ....++ ...|...+..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999998887421 111222 245667777788888998888776654
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.87 E-value=3.7 Score=42.51 Aligned_cols=83 Identities=13% Similarity=-0.021 Sum_probs=49.8
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhcC-----
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHG---------NVELGEKVAQYLIDLD----- 472 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~----- 472 (569)
-+..-|..|.....|.+++++|.+.|+.. ..+-+...+..|+..|...+ +.+..+...=++...+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~RwY~ 690 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYN 690 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHTTB
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhccc
Confidence 34556777777777777777777777766 44567777777777777655 5565555555554311
Q ss_pred CCChhHHHHHHHHHHHcC
Q 038890 473 PLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g 490 (569)
--++.....+.....+.|
T Consensus 691 efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 691 YCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 113344444444454444
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.72 E-value=2.9 Score=30.23 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4557777788888888899999999999999999999999999999987664 334567666643
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.03 E-value=3.9 Score=32.88 Aligned_cols=26 Identities=4% Similarity=-0.087 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
..---+..+|.+.+++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33334556666666666666666665
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.02 E-value=1.9 Score=41.00 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=38.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEPDVFV 444 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 444 (569)
++.++...|+++++...+..+...+ +.+...|..+|.++.+.|+..+|++.|++. |+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4445556666666666666665444 445556666666666677766666666554 56665543
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.92 E-value=4.5 Score=29.26 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+..-|++.+..+.+.+|.+.+|+..|.++++-++..-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 333467799999999999999999999999999988875544445566655
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.71 E-value=5.8 Score=43.87 Aligned_cols=124 Identities=8% Similarity=-0.089 Sum_probs=80.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCC-----------------
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PME----------------- 439 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~----------------- 439 (569)
.++..+...+..+.+..+.... +.++...-.+..+|...|++++|.+.|.+. ++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445555666666555544332 233333345666777788888888888776 111
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 440 ------PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP-LNH----AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 440 ------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.-..-|..++..+.+.+.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 1123467777888888899999988888887543 332 25777888888999999998888766554433
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.06 E-value=23 Score=33.38 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-CChHHHHHHHHHchhccccC-CCCccHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK--------RNIFSWNSIITGFVQG-GRAREALELFQEMQSSSVEE-MVKPDKI 274 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~p~~~ 274 (569)
....|...|.+.|+.++...++..... ........++..+... +..+.-.++..+..+..-.. ..-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888887764 1233466677777665 44444445555444211000 0000111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc-----chhHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHH-
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD-----VVIGTALVDMYGKCGCVERAYGVFKEMPK------KDTLAW- 342 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~- 342 (569)
.=.-++..|...|++.+|..++..+.+.--..| ..++..-+..|...+++.++...+..... +++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 112456677778888888777777665311111 23344556667777777777766654421 222111
Q ss_pred ---HHHHHHHH-HcCChhHHHHHHHHHHHC-C--CCCC---HHHHHHHHHHHHccCCHHHHHHHHH-HhHHhcCCCCCHh
Q 038890 343 ---TAMISVFA-LNGYGKEAFDTFREMEAE-G--VRPN---HVTFVGLLSACAHSGLVEKGRWCFV-MMRHVYLVEPHVY 411 (569)
Q Consensus 343 ---~~li~~~~-~~g~~~~A~~~~~~m~~~-~--~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 411 (569)
..-...+. ..+++..|...|-+..+. . ..|. ...|..+. +.. .++..+...++. .....+ ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhcccccccc-CCccHH
Confidence 11122344 567777777766654321 0 0111 11222221 112 222222222221 211122 235555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------cCCCChhHHHHHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID------LDPLNHAFYVNLC 483 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~ 483 (569)
.+..++.+| +.+++.+...++... .+..|......+ ..+++.+.. ..|-....+..++
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 555555554 456776666666665 233344321111 111222211 2355555666666
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
..+.- ..+++...+-+|...|.-
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHCc--CHHHHHHHHHHHHHCCCe
Confidence 65532 688999999999887753
No 257
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.02 E-value=14 Score=30.98 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHHHcC
Q 038890 337 KDTLAWTAMISVFALNG 353 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g 353 (569)
++...-...+.++...+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333443333
No 258
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.80 E-value=11 Score=29.78 Aligned_cols=80 Identities=8% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+++...|... ..+.|..-...-+.-.... +.+.++|..+.. ++......|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555554 4445665444333322222 337788888876 456677889999999999999999999999988
Q ss_pred HCCCCC
Q 038890 504 ERGIRK 509 (569)
Q Consensus 504 ~~g~~~ 509 (569)
+++-+|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 888776
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.52 E-value=6.4 Score=30.19 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
|.-+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+.| +...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence 4556777778888888899999999999999999999999999999987664 445567766643
No 260
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.49 E-value=20 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=6.0
Q ss_pred ChhHHHHHHHHHHHcC
Q 038890 338 DTLAWTAMISVFALNG 353 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g 353 (569)
+...-...+.++...|
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 261
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.08 E-value=17 Score=29.27 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+++...|... ..+.|......-+.-.-..++ ...+|..|.. ++.....+|...+..+...|++.+|.++|+.-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444 344566544444432222333 5667777765 556677888999999999999999999999988
Q ss_pred HCCCCCC
Q 038890 504 ERGIRKE 510 (569)
Q Consensus 504 ~~g~~~~ 510 (569)
+.+-+|.
T Consensus 124 ~~~A~P~ 130 (164)
T 2wvi_A 124 QQKAEPL 130 (164)
T ss_dssp HTTCBSH
T ss_pred HcCCCcH
Confidence 8887764
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.98 E-value=29 Score=31.39 Aligned_cols=187 Identities=11% Similarity=0.027 Sum_probs=104.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 179 ISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
+..-...|++=+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++..
T Consensus 20 l~~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 344556778878877744 5677788888888888775442 233455566655554422
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChHHHHHHH
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGA-----IDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVERAYGVF 331 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (569)
-+++.=...+++++......++..+..... ..-..+....-.+.|- .-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 222100045567777777777766655321 1122223333333321 236678888889999999999998877
Q ss_pred hhCCCCChhHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 332 KEMPKKDTLAWTAMISVFALN---GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
-.-...+...+..++.-+... |...++ +...-..++ .|...|+...|..+|+...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 633322445554444443333 322221 111111222 34456788888888876654
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.62 E-value=5.8 Score=34.84 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=33.4
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
...+.|+++.++.....-++.. +-|...-..++..+|-.|++++|..-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455667777766666666444 456666666777777777777776666655
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.39 E-value=4.8 Score=35.35 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.+.+.|.+++|++.+..- +..| |...-..|+..++-.|++++|.+-++...+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456778888888777665 3344 6666677888888888888888888888888887543
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.12 E-value=37 Score=31.98 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CChh----
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--------RDVVSWNAMIIGYLRS-GDLDVALDLFRRMKK-----RNIF---- 235 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~---- 235 (569)
....|...|.+.|+.++..+++..... .....-..++..+... +..+.-.++..+..+ .-.+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999998888887765 2333455667766653 333444444443331 1111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCcchh
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVK---PDKITIASVLSACAYLGAIDHGKWVHGYLRRS--GLDCDVVI 310 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 310 (569)
.-..++..|...|++.+|.+++..+.+.- .... --...+..-+..|...+++.++...+...... .+.+++.+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLREL--KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 12367889999999999999999887421 1111 11344566677888999999999999887653 22233333
Q ss_pred HH----HHHHHHH-hcCChHHHHHHHhhCC----CCC------hhHHHHHHHHHHHcCChhHHHHHHH-HHHHCCCCCCH
Q 038890 311 GT----ALVDMYG-KCGCVERAYGVFKEMP----KKD------TLAWTAMISVFALNGYGKEAFDTFR-EMEAEGVRPNH 374 (569)
Q Consensus 311 ~~----~l~~~~~-~~g~~~~A~~~~~~~~----~~~------~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~ 374 (569)
.. .-+-.+. ..++|..|...|-+.- ..+ ...|..+ .+. -.++..+.-.++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccH
Confidence 22 2234456 7899999988775542 111 1122222 222 2233333333322 21111134555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 453 (569)
..+..++.++ ..+++.....+++..... +..|+.....+-..+. .-...++.-+- .| ...++..+...+.
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~~L~~--~Ir~~~L~~i~----~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE--LAEDVIVQAHLGTLYD--TMLEQNLCRII----EPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT--TTTSHHHHHHHHHHHH--HHHHHHHHHHH----TTCSEEEHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH--HhcChHHHHHHHHHHH--HHHHHHHHHHh----HhhceeeHHHHHHHHC
Confidence 5666666664 457887777777766532 3445543221111111 01112221111 12 2334455555443
Q ss_pred hcCCHHHHHHHHHHHhhcC
Q 038890 454 MHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~ 472 (569)
- ..++++..+-+++..+
T Consensus 328 l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp C--CHHHHHHHHHHHHHTT
T ss_pred c--CHHHHHHHHHHHHHCC
Confidence 2 6788888888888755
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.10 E-value=23 Score=29.63 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
.++..+-.+.+ .++...-...+..+...++.+....+. .+.+ .++..+-...+.++.+.|+.+....+.+.+.
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 91 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALK 91 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Confidence 44444444443 245555555555555555533222222 2222 2344455555556666665444444444444
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038890 200 NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 249 (569)
.++..+-...+.++.+.++.+....+.+.+..++..+-...+.++.+.|.
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 45555555555555555554444344444444554444444444444444
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.20 E-value=66 Score=34.26 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH
Q 038890 84 ATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~ 130 (569)
+.++|..+. ..-|..+++...+-++.. .+.++|+.+.+
T Consensus 221 l~~Iy~k~~---~~dy~~a~~~ai~LnD~~------li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMP---NCDYLTLNKVVVNLNDAG------LALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSS---SCCHHHHHHHHHHHTCHH------HHHHHHHHHHT
T ss_pred HHHHHHhCC---chhHHHHHHHHHHcCCHH------HHHHHHHHHHh
Confidence 445555543 235666777777777877 88888888764
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.80 E-value=25 Score=29.16 Aligned_cols=109 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
+..+-...+.++.+.|+.+....+...+..++...-...+.++...++. .+...+..+.. .++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3334444444444444443333344444445555555555555555553 34444444443 3455566666666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
.|.. .+...+..+.. .++...-...+.++.+.+
T Consensus 165 ~~~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 165 IGGE-RVRAAMEKLAE----TGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HCSH-HHHHHHHHHHH----HCCHHHHHHHHHHHHHCC
T ss_pred hCch-hHHHHHHHHHh----CCCHHHHHHHHHHHHHHH
Confidence 6654 34555555553 245555555555555443
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.74 E-value=15 Score=26.47 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=24.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 212 GYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.+...|++++|..+.+...-||...|-.|.. -+.|..+++...+..+.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3444555555555555555555555544433 24555555555555553
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.33 E-value=11 Score=28.84 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=42.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
++.-+-.+.+-|++.+....+.+|.+.+|+..|.++++-++..-.+....|..++
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3333444477899999999999999999999999999999875544455676665
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.20 E-value=15 Score=26.37 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 288 AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777766553 22222223345667899999999999988888888876644 467888888888878777
Q ss_pred CCCCCCHHHHHH
Q 038890 368 EGVRPNHVTFVG 379 (569)
Q Consensus 368 ~~~~p~~~~~~~ 379 (569)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 444444443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.92 E-value=16 Score=26.36 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLF 226 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (569)
+...|++++|..+.+...-||...|.++.. .+.|-.+++...+
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 334455555555554444444444433322 2334444444444
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.27 E-value=17 Score=26.25 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
...++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++.. .+.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766553 22222223345667899999999999999889888877654 46688888888887777
Q ss_pred HCCCCCCHHHHHH
Q 038890 367 AEGVRPNHVTFVG 379 (569)
Q Consensus 367 ~~~~~p~~~~~~~ 379 (569)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 444444443
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.77 E-value=16 Score=32.26 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=52.6
Q ss_pred HHHHHHHCCCCCCcc---cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 124 LYKQMLCTGISPDCL---TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF--VQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 124 ~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
+++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 95 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 556666666555433 1123444455666654 444555666554321 1112334445677877777776653
Q ss_pred CC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038890 199 SN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK 231 (569)
Q Consensus 199 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (569)
.. ++...++ .+...+..|+.+-+..+++.-..
T Consensus 96 ~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 96 ADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp CCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCC
Confidence 33 2222222 23334566777776666665443
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.71 E-value=67 Score=32.45 Aligned_cols=243 Identities=10% Similarity=-0.048 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHchhccccCCCCccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPDKI--TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
.+.+.|...+....+. ..+.+... ....+.......+...++...+...... ..+.....-.+....+.|+++
T Consensus 228 ~d~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA---QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHhhhhc---cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHH
Confidence 3778899999887521 11222211 2222333334445344555555554433 233334445555666789999
Q ss_pred HHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|...|..|.... .....-+..++...|+.++|..+|..+... . +|-.++. ..+.|..-.. .
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-------~- 367 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-------K- 367 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-------C-
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-------C-
Confidence 9999999998642 333445667788899999999999998742 2 3333332 2223321000 0
Q ss_pred hcCCCCC---H---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---
Q 038890 403 VYLVEPH---V---YHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP--- 473 (569)
Q Consensus 403 ~~~~~~~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--- 473 (569)
...+.+. . ..-...+..+...|....|...+.......+......+.......|..+.++....+....+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~ 447 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEE 447 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhh
Confidence 0000110 0 011233455778899999988777662223444444555556678888887766654433221
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 474 LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 474 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
.-|..|...+.-+.+.-.++.++-.---..+.++.|.
T Consensus 448 ~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 448 RFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred hCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 0122355555566655556655444334456676664
No 276
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=73.75 E-value=2.3 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHHHHHHhCCcccCccccc
Q 038890 533 KVVKEELVLILNGLSKIMKNGGFGQYIRGLS 563 (569)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 563 (569)
.+...++++.+++-.++++..|+.||+-.+=
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 4567899999999999999999999987653
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.24 E-value=69 Score=29.28 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDT----FREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|.....-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455557778888888877532 22344555665554443 3445566777787777777766655
Q ss_pred cCC--HHHHHHHHHHhH---HhcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038890 387 SGL--VEKGRWCFVMMR---HVYL--VEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 387 ~~~--~~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 459 (569)
... .+. ..+.+.+. ...| -.-++.....+...|.+.+++.+|...|= .+..+....|..++.-+...+.
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 442 111 11222211 0122 12466777888999999999999988874 3444455666555554444332
Q ss_pred HHHHHHHHHhhcCCCChh-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 460 LGEKVAQYLIDLDPLNHA-FYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
|.... +....+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222 233344457778999999988777654
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.94 E-value=12 Score=35.89 Aligned_cols=96 Identities=7% Similarity=-0.100 Sum_probs=59.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHH--
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYL-VEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGAL-- 448 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l-- 448 (569)
+...+...+.+.|+++.|.+.+.++..... ..--...+..+++.+...+++..+...+.++ ...++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566677788888888888888888875431 1223466777788888888888888877776 112222211111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHhhc
Q 038890 449 --LGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 449 --~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+..+...+++..|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234567777777777665543
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.85 E-value=44 Score=28.35 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=52.4
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 428 EAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 428 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++...|... ..+-|......-+. |+.. .+....+|..|.. ++.....+|...+..+...|++.+|.++|+.-++
T Consensus 102 rc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 102 RCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444 34455543333332 2222 2456678887776 5566778899999999999999999999999888
Q ss_pred CCCCC
Q 038890 505 RGIRK 509 (569)
Q Consensus 505 ~g~~~ 509 (569)
++-+|
T Consensus 179 ~~A~P 183 (223)
T 4aez_C 179 MKAKP 183 (223)
T ss_dssp HTCBS
T ss_pred cCCcc
Confidence 88776
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.08 E-value=91 Score=28.47 Aligned_cols=185 Identities=12% Similarity=0.064 Sum_probs=100.0
Q ss_pred HHHHhcCCH---HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHH
Q 038890 180 SLFMACGFV---TSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 180 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
......|++ =+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...+-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 445567777 67776644 5667778888888888775432 2334455555544444
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHH-HHHHHHHHH----HHhC--CCCcchhHHHHHHHHHhcCChHHHHH
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAID-HGKWVHGYL----RRSG--LDCDVVIGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 329 (569)
..-|++.=...++++|......++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3222110004456677776666666665544311 112222222 2333 23456777888899999999999998
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 330 VFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
.|---.++++..+..++.-+...+...++ +...-..++ -|...++...|..+++...
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 88532322335555554444333321111 112222222 3455677777777665554
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.71 E-value=73 Score=30.45 Aligned_cols=96 Identities=7% Similarity=-0.052 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHH--
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPK------KDTLAWTAMISVFALNGYGKEAFDTFREMEA---EGVRPNHVTF-- 377 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~-- 377 (569)
.+...+...|.+.|+++.|.+.|.++.. .-...+...+..+...+++..+...+.+... .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567788888899999988888887753 2345677777888888888888888887653 2323332211
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
..-...+...+++..|...|-+....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 122223345678888887777766444
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.28 E-value=82 Score=33.92 Aligned_cols=104 Identities=6% Similarity=-0.172 Sum_probs=64.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEP----------------- 440 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p----------------- 440 (569)
++..|...|.++-+.++...+ +.++..--.+..+|...|++++|.+.|+++ ++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 556667777777665433222 334433346777888899999999999887 2211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCChh----HHHHHHHHHHHc
Q 038890 441 ------DVFVWGALLGGCQMHGNVELGEKVAQYLIDL-DPLNHA----FYVNLCDMYAKA 489 (569)
Q Consensus 441 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 489 (569)
...-|..++..+.+.+-++.+.++.+.+++. .++++. .|..+..+.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 1125667777778888888888888888763 344443 344444444443
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.03 E-value=1.3e+02 Score=27.25 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDT----FREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455557778888888877542 23345566776555543 4555567788888777777766654
Q ss_pred cCC--H---HHHHHHHHHhHHhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 038890 387 SGL--V---EKGRWCFVMMRHVYL-VEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMH---GN 457 (569)
Q Consensus 387 ~~~--~---~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 457 (569)
... . +-.......-.+..+ -.-++.....+...|.+.|++.+|...|-. +..-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 221 1 111112222221111 124677888899999999999999887763 2112345555555444433 33
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
..++-- +....+--|.-.|+...|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333211 12223334667789999999888764
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=52.55 E-value=1.3e+02 Score=27.12 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=44.1
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 432 LIRSMPMEPDV--FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 432 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+|...++.|.. .++...+..+.+.+++..|..+.+++++.+|... ..++|.+++..-.+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 34444777754 3677788889999999999999999999998632 345577776666544
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.79 E-value=1.3e+02 Score=26.33 Aligned_cols=181 Identities=7% Similarity=-0.033 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL 143 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 143 (569)
.+-...+..+... |..+....+.+.+..++...-...+.++...|... ......+.++..+... .++...-...
T Consensus 38 ~vr~~A~~~L~~~--~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~~~~l~~~L~~~~~~--d~~~~vr~~a 111 (280)
T 1oyz_A 38 LKRISSARVLQLR--GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDNVFNILNNMALN--DKSACVRATA 111 (280)
T ss_dssp HHHHHHHHHHHHH--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHHHHHHHHHHHHH--CSCHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHhc--CCCHHHHHHH
Confidence 4555556666666 55444444444444555555555555565555432 0111223333322111 1444444444
Q ss_pred HHHHHccC--CcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC--CH
Q 038890 144 LKECTKRL--DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG--DL 219 (569)
Q Consensus 144 l~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 219 (569)
+.++...+ +......+...+.+.--.++..+-...+.++...|+.+....+.+.+..++...-...+.++...+ ..
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~ 191 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH
Confidence 44444433 111111222222222123455555555666666655332333333333455444444444444433 22
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 038890 220 DVALDLFRRMKKRNIFSWNSIITGFVQGGRA 250 (569)
Q Consensus 220 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 250 (569)
+-...+...+..++..+-...+.++.+.|+.
T Consensus 192 ~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 192 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH
Confidence 2222233333344444444455555555543
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.75 E-value=53 Score=27.37 Aligned_cols=93 Identities=9% Similarity=-0.038 Sum_probs=57.9
Q ss_pred hHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHh--hcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChh
Q 038890 5 LQMVSYSLLNSPAKVSPPNKESTKLILRNAIDE--CKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLS 82 (569)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 82 (569)
+-|.|...+... +...+++-....-+..... |.+..++..+|..+...|+-.... ..|...+..+... |++.
T Consensus 59 lLErc~~~F~~~--~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~A--lfYe~wA~~lE~~--g~~~ 132 (202)
T 3esl_A 59 TMERCLIYIQDM--ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLS--LFYEEFSKLLENA--QFFL 132 (202)
T ss_dssp HHHHHHHHHTTC--GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBH--HHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHhccc--ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHH--HHHHHHHHHHHHc--CCHH
Confidence 344555544443 2233444333333333333 444678888999999888765552 6777888888888 9999
Q ss_pred HHHHHhhcCCCCCcccHHHHH
Q 038890 83 YATNVFSHIKRSDLYTYNIMI 103 (569)
Q Consensus 83 ~A~~~~~~~~~~~~~~~~~li 103 (569)
+|.++|+.-.+........|.
T Consensus 133 ~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 133 EAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHH
Confidence 999998887665555555554
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.24 E-value=88 Score=27.16 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=53.4
Q ss_pred HHhhcCCCCChhHHHHHhhcCCCC----CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCccc--HHHHH
Q 038890 71 FFCALSVSGSLSYATNVFSHIKRS----DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLT--FPFLL 144 (569)
Q Consensus 71 ~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~ll 144 (569)
...++. |+.+....+++.-... +...++.+..+ +..|+.+ +++.+.+.|..|+... -.+.+
T Consensus 10 ~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A-~~~g~~~----------~v~~Ll~~g~~~~~~~~~g~t~L 76 (285)
T 1wdy_A 10 IKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRED----------IVELLLRHGADPVLRKKNGATPF 76 (285)
T ss_dssp HHHHHT--TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH-HHTTCHH----------HHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HHHHHc--CCHHHHHHHHHcCCCcccccCCCCCcHHHHH-HHcCCHH----------HHHHHHHcCCCCcccCCCCCCHH
Confidence 334445 7777766666654332 22233444433 3444433 5555666665554321 11223
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHh---HHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVF---VQNSVISLFMACGFVTSARMLFDEMSN 200 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 200 (569)
...+..|+.+ +.+.+++.|..++.. -.+ .+...+..|+.+-+..+++.-..
T Consensus 77 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 77 LLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCC
Confidence 3334445543 444445555544321 122 23344567777776666665433
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.66 E-value=1.6e+02 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHccCCcH
Q 038890 124 LYKQMLCTGISPDCLTFPFLLKECTKRLDGL 154 (569)
Q Consensus 124 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 154 (569)
+++.+.+.|..++...-.+.+...+..|+.+
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 76 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTK 76 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 3444444454443332223333444455554
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.45 E-value=1.2e+02 Score=26.05 Aligned_cols=27 Identities=7% Similarity=-0.182 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 476 HAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 476 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+......+..+.+.|+-++|.++|=+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 333444445555555555555554443
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.43 E-value=78 Score=24.11 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPKKDT---LAWTAMISVFALNGY--GKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 373 (569)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566677777788888887777765521 223333344443322 3456667777766654433
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.52 E-value=1.2e+02 Score=26.79 Aligned_cols=183 Identities=9% Similarity=-0.033 Sum_probs=88.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH---VTFVGLLSACAHSGLVE 391 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~ 391 (569)
+...+..|+.+-+..+++.-...+...-...+...+..|+.+-+. .+.+.|..++. ...+.|. ..+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALY-YAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHH-HHHHcCCHH
Confidence 334455677776666666432211111112233334556654333 33445555443 2223333 334556766
Q ss_pred HHHHHHHHhHHhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHV---YHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
-+..+++. |..++. ..+...+...+..|+.+-+..+++.-....+...-.+.+......|+.+-+.-+++.-
T Consensus 110 ~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 110 TVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 65555544 222222 2222344555667777766666665422222212223344455778888888777776
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCC
Q 038890 469 IDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511 (569)
Q Consensus 469 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (569)
...+..+..-.+..+....+.|+. ++.+.+.+.|..++.
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred CCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 655433322222212233345653 455666777887763
No 292
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.94 E-value=1.9e+02 Score=25.94 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH---HHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh--H
Q 038890 100 NIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF---PFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF--V 174 (569)
Q Consensus 100 ~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~ 174 (569)
+.|+.+ ++.|+.+ +.+.+++.|..||...- .+-+...+..|+.+ +.+.+++.|..++.. .
T Consensus 27 t~L~~A-v~~g~~~----------~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~ 91 (337)
T 4g8k_A 27 HLLIKA-VQNEDVD----------LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKN 91 (337)
T ss_dssp HHHHHH-HHTTCHH----------HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTT
T ss_pred hHHHHH-HHcCCHH----------HHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhhhccC
Confidence 344443 6666655 44555566766654321 12333445566654 444555666544321 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRR 228 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (569)
....+......+.......+...-.. .|..-++. +...+..|..+-+..+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~-l~~A~~~~~~~~~~~ll~~ 147 (337)
T 4g8k_A 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKR 147 (337)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHT
T ss_pred CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCH-HHHHHHcCcHHHHHHHHHc
Confidence 11122233344555555544443332 22222222 2333456676666666654
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.79 E-value=1e+02 Score=30.11 Aligned_cols=65 Identities=17% Similarity=-0.033 Sum_probs=28.5
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 422 RAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
-...++.|..+|..+ .+.| +...|+.|.-.....|+.-+|.-.|-+......+.+.+..+|...+
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 333444555555444 2223 2334444444444444444444444444443333444444444433
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.78 E-value=1.8e+02 Score=28.52 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCC-CCccH--HHHH-HHHHHHHccCCHHHHHHHHHHHHH
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPDK--ITIA-SVLSACAYLGAIDHGKWVHGYLRR 301 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 301 (569)
..+|.+++.|...+.++.|..+..+.. -.. ..++. .+|. .+.+.+.-.+++.+|.+.+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356777777777777777777777764 110 01111 1222 233445556666666666665544
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.46 E-value=1.6e+02 Score=24.53 Aligned_cols=15 Identities=7% Similarity=-0.278 Sum_probs=6.9
Q ss_pred HHhcCChHHHHHHHh
Q 038890 318 YGKCGCVERAYGVFK 332 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~ 332 (569)
..+.|+.+-+.-+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344455544444443
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.37 E-value=1.3e+02 Score=23.61 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHch
Q 038890 207 NAMIIGYLRSGDLDVALDLFRRMKKRNI---FSWNSIITGFVQGGR--AREALELFQEMQ 261 (569)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~ 261 (569)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~ 72 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 72 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 4455666666666666666666654421 122333334433222 234555555554
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.24 E-value=76 Score=31.02 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH--hH-HHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV--YH-YACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
..++.+++.|...+.++.|..+..+..--..-.++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467778888888888888888888765100001111 12 233456667788888888877765
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.76 E-value=3.1e+02 Score=29.50 Aligned_cols=127 Identities=7% Similarity=-0.024 Sum_probs=65.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC
Q 038890 209 MIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA 288 (569)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 288 (569)
++..+...|..+-|.++..-++. +...-..+..+|...|++++|...|++. ..|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA-----A~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT-----SLVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CCTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH-----hhhcccCcccccc----------
Confidence 55556667777776665555544 3333345677788888888888888776 3333221100000
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC----CCCCh----hHHHHHHHHHHHcC
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM----PKKDT----LAWTAMISVFALNG 353 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g 353 (569)
......++... + .......-|..++..+.+.+.++.+.++-+.. ...|. ..|+.+..+.+..|
T Consensus 880 ~~~~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00000000000 0 00111235677788888888877776655433 22233 35666666665543
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.82 E-value=85 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=15.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
..|.+.|.+++|.+++++..+..+.+...-.-|
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 346666666666666666555444443333333
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.99 E-value=89 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=13.2
Q ss_pred HHHHHhCCChHHHHHHHHHch
Q 038890 241 ITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~ 261 (569)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666666666666666654
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.25 E-value=2.1e+02 Score=24.89 Aligned_cols=18 Identities=6% Similarity=-0.228 Sum_probs=6.5
Q ss_pred CcchhHHHHHHHHHhcCC
Q 038890 306 CDVVIGTALVDMYGKCGC 323 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~ 323 (569)
++..+-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 333333344444444433
No 302
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.85 E-value=1.4e+02 Score=22.95 Aligned_cols=45 Identities=22% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGDLDVALDLFR 227 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (569)
..+..|+.+-+.-+++. ..+ |....+ -+...+..|+.+-+.-+++
T Consensus 107 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE-SDLHRRDARGLT-PLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHTCHHHHHHHHTT-SCTTCCCTTSCC-HHHHHHHSCCHHHHHHHHT
T ss_pred HHHHhChHHHHHHHHhc-cCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHh
Confidence 33456666666666655 321 222122 2233345566655555444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.35 E-value=68 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPKKD---TLAWTAMISVFALNGY--GKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 372 (569)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456666777777777777777776552 1223333334443222 344566666666655443
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.92 E-value=1.4e+02 Score=22.62 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHch
Q 038890 207 NAMIIGYLRSGDLDVALDLFRRMKKRNI---FSWNSIITGFVQGGR--AREALELFQEMQ 261 (569)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~ 261 (569)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~ 70 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW 70 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 4566666667777777777777765422 223333344444332 244556666655
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.32 E-value=1e+02 Score=20.83 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 038890 126 KQMLCTGISPDCLTFPFLLKECTKRL-DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV 188 (569)
Q Consensus 126 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 188 (569)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+.-..+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777666543 44556665554 5667888888888877666666666677777777653
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.02 E-value=90 Score=24.61 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc
Q 038890 120 KCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDD 171 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 171 (569)
.+.++|..|...|+-.... -|......+-..|++.+|..+|+..++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5667777777766554332 444555556666777777777777777665553
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.40 E-value=1.4e+02 Score=28.18 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHhcCCHHHHHHHHhh
Q 038890 182 FMACGFVTSARMLFDE 197 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~ 197 (569)
.+..|+.+-+.-+++.
T Consensus 87 A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 87 AARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhC
Confidence 3445555555555544
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.83 E-value=1.5e+02 Score=24.76 Aligned_cols=49 Identities=4% Similarity=-0.211 Sum_probs=21.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
...+..|+.+-+.-+++.-..++ .... ..+....+.|+.+-+.-+++..
T Consensus 182 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhh
Confidence 33445555555555554432221 1111 1233345566665555555443
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.43 E-value=2.3e+02 Score=23.66 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.1
Q ss_pred cCCHHHHHHHH
Q 038890 185 CGFVTSARMLF 195 (569)
Q Consensus 185 ~g~~~~A~~~~ 195 (569)
.|+.+-+..++
T Consensus 126 ~~~~~~~~~Ll 136 (241)
T 1k1a_A 126 TECQETVQLLL 136 (241)
T ss_dssp HTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 33433333333
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.18 E-value=81 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.+...++.+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677777788888887766654
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.43 E-value=2.1e+02 Score=22.88 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh
Q 038890 120 KCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF 173 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 173 (569)
.+.++|..|...||-.... .|......+-..|++..|..+|...++.+-.|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5677888888887665443 45556666677788888888888888877776543
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.64 E-value=3.3e+02 Score=24.73 Aligned_cols=81 Identities=6% Similarity=-0.098 Sum_probs=39.3
Q ss_pred CChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHH
Q 038890 79 GSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLV 155 (569)
Q Consensus 79 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 155 (569)
|+.+....+++.-.. .+...++.|..+ +..|+.+ +.+.+.+.|..++...-.+.+...+..|+.+-
T Consensus 31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g~~~----------~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFGCVD----------TAKYLASVGEVHSLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHCCHH----------HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcCCHH----------HHHHHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence 666666666655322 233334444433 3334333 44445555544444222333444455667666
Q ss_pred HHHHHHHHHHhCCCC
Q 038890 156 GASVYGQVVKFGVCD 170 (569)
Q Consensus 156 a~~~~~~~~~~g~~~ 170 (569)
+..+++.....|..+
T Consensus 100 v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 100 VVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHTCCH
T ss_pred HHHHHHhccccCCCH
Confidence 666666554445443
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.45 E-value=1e+02 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHC
Q 038890 120 KCLKLYKQMLCT 131 (569)
Q Consensus 120 ~A~~~~~~m~~~ 131 (569)
.|.++++.+.+.
T Consensus 39 sa~ei~~~l~~~ 50 (145)
T 2fe3_A 39 TADDIYKALEGK 50 (145)
T ss_dssp CHHHHHHHHGGG
T ss_pred CHHHHHHHHHHh
Confidence 444444444443
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.32 E-value=72 Score=27.48 Aligned_cols=115 Identities=9% Similarity=-0.130 Sum_probs=64.9
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHH--ccCCcHHHHHHHHHHHHhCC--------
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-------TFPFLLKECT--KRLDGLVGASVYGQVVKFGV-------- 168 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~-------- 168 (569)
.++.|+.+ ....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.....+.
T Consensus 12 A~~~g~~~------~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 12 IVSRGSPD------GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHTCGG------GGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHhCCHH------HHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 36677777 7777888777777666533 2344444432 67888877777776544211
Q ss_pred -C-CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------------HHHHHHHHHHhcCCHHHHHHHHH
Q 038890 169 -C-DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVV----------------SWNAMIIGYLRSGDLDVALDLFR 227 (569)
Q Consensus 169 -~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~ 227 (569)
. .+..-.+ .+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.-+++
T Consensus 86 ~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 86 FRDVYYRGQT-ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp BCCSSEESBC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCC-HHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0 0111222 333445678888777777754332221 11233444456777777777777
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.74 E-value=3.3e+02 Score=24.39 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC
Q 038890 176 NSVISLFMACGFVTSARMLFDEMSNR 201 (569)
Q Consensus 176 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 201 (569)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34555555566666666666665543
No 316
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.33 E-value=3.7e+02 Score=24.77 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSNRD 202 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 202 (569)
...++.-|...|+.++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 3456666666777777777777766543
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.07 E-value=1.2e+02 Score=25.74 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc
Q 038890 120 KCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDD 171 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 171 (569)
.+.++|..|...||--... -|......+-..|++..|..+|+..++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6678888888877665433 455566666677888888888888887776664
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.02 E-value=2.8e+02 Score=22.97 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=39.6
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHhCCC
Q 038890 237 WNSIITGFV---QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA-----IDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 237 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 305 (569)
+..+|+++. +..+.+.|+-++-+|+ ..| .|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml----~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLV----EAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344555554 4578889999999998 777 6666666666666655443 23444455555555543
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.74 E-value=1e+02 Score=21.98 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHH
Q 038890 187 FVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (569)
..+.|.++++.+..+...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455555555555555555555555555444444433
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.46 E-value=81 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=28.9
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHH
Q 038890 322 GCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 322 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (569)
...+.|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.91 E-value=1e+02 Score=24.52 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~ 131 (569)
-..++..+...+... .|.++++.+.+.
T Consensus 35 R~~IL~~L~~~~~h~------sA~eI~~~l~~~ 61 (162)
T 4ets_A 35 REVLLKTLYHSDTHY------TPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHSCCSCB------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC------CHHHHHHHHHhh
Confidence 334444444444444 555555555443
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.88 E-value=2.9e+02 Score=22.84 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 237 WNSIITGFV---QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 237 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
+..+|+++. +..+.+.|+-.+-+|+ ..|..|....-..++-+.-.-|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl----~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARIL----TAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhhcc
Confidence 334555554 4578999999999998 6666777666666666554444
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.82 E-value=1.2e+02 Score=23.71 Aligned_cols=13 Identities=0% Similarity=-0.120 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHCC
Q 038890 120 KCLKLYKQMLCTG 132 (569)
Q Consensus 120 ~A~~~~~~m~~~g 132 (569)
.|.++++.+.+.+
T Consensus 44 sa~ei~~~l~~~~ 56 (150)
T 2xig_A 44 SPEEITHSIRQKD 56 (150)
T ss_dssp CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhC
Confidence 4555555554433
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.46 E-value=3.1e+02 Score=22.57 Aligned_cols=173 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCChhHHHHHhhcCC----CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHH--H
Q 038890 69 LLFFCALSVSGSLSYATNVFSHIK----RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFP--F 142 (569)
Q Consensus 69 l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ 142 (569)
.+...+.. |+.+....+++.-. .++...++.+..+ +..|+.+ +++.+.+.|..++..... +
T Consensus 9 ~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----------~v~~Ll~~g~~~~~~~~~g~t 75 (231)
T 3aji_A 9 MICNLAYS--GKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----------IVEFLLQLGVPVNDKDDAGWS 75 (231)
T ss_dssp HHHHHHHH--TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----------HHHHHHHTTCCSCCCCTTSCC
T ss_pred hHHHHHHh--CCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----------HHHHHHHhCCCCCCcCCCCCC
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH--HHHHHHHhcCCHHHHHHHHhhcCCCChhHHH--HHHHHHHhcCC
Q 038890 143 LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN--SVISLFMACGFVTSARMLFDEMSNRDVVSWN--AMIIGYLRSGD 218 (569)
Q Consensus 143 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 218 (569)
.+...+..|+.+ +.+.+++.|..++..... +.+...+..|+.+-+..+++.-..++..... +.+...+..|+
T Consensus 76 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 76 PLHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Q ss_pred HHHHHHHHHhcCCCChhHHH--HHHHHHHhCCChHHHHHHHH
Q 038890 219 LDVALDLFRRMKKRNIFSWN--SIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 219 ~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~ 258 (569)
.+-+.-+++.-..++..... +.+...+..|+.+-+.-+++
T Consensus 152 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.12 E-value=4.2e+02 Score=23.90 Aligned_cols=126 Identities=13% Similarity=0.231 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHC-C----CCCCcccHHH---HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 038890 120 KCLKLYKQMLCT-G----ISPDCLTFPF---LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSA 191 (569)
Q Consensus 120 ~A~~~~~~m~~~-g----~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 191 (569)
.|..+|..+... + ..|+...... .+..+.+..+ -++++.+.+.|+.|...++.=++..+.+.=.++.+
T Consensus 167 ~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~ 242 (331)
T 3qye_A 167 EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFV 242 (331)
T ss_dssp HHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHH
T ss_pred HHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHH
Confidence 788888887654 2 2233322211 1222223222 25677778888888887777777778777778888
Q ss_pred HHHHhhcCC--CChhHHHH--HHH----HHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCC
Q 038890 192 RMLFDEMSN--RDVVSWNA--MII----GYLRSGDLDVALDLFRR-MKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 192 ~~~~~~~~~--~~~~~~~~--l~~----~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 249 (569)
.++|+.+.. +....+-+ ++. ......++++....++. .+..+......++.-.....-
T Consensus 243 lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 243 ARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 888887754 22222211 111 12234688999998887 444444555555554444443
No 326
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.08 E-value=3.2e+02 Score=22.65 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=40.5
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCC
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFV--QNSVISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGD 218 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 218 (569)
+...+..|+.+....+++.+.+.|..++... ..+.+...+..|+.+-+..+++.-..+ +...++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 3344556777777777766666554433211 112333445567766666555533221 111111 2223334555
Q ss_pred HHHHHHHHHhc
Q 038890 219 LDVALDLFRRM 229 (569)
Q Consensus 219 ~~~A~~~~~~~ 229 (569)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 55555555443
No 327
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.53 E-value=2.3e+02 Score=28.91 Aligned_cols=63 Identities=17% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 426 FSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 426 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
.+.|.++.+-|+ ...............|++..|.++++.+...+|+|..+...++++|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 355666666664 223333345556789999999999999999999999999999999888774
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.49 E-value=1.4e+02 Score=23.18 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHCC
Q 038890 120 KCLKLYKQMLCTG 132 (569)
Q Consensus 120 ~A~~~~~~m~~~g 132 (569)
.|.++++.+.+.+
T Consensus 35 ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 35 TPDDILGEVRKTA 47 (145)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhC
Confidence 4555555554443
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.45 E-value=3.6e+02 Score=22.55 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHH---hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHhCC
Q 038890 233 NIFSWNSIITGFV---QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA-----IDHGKWVHGYLRRSGL 304 (569)
Q Consensus 233 ~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 304 (569)
+...+..+|+++. +..+.+.|+-++-+|+ ..|-.|....-..++-+.-.-|. ...|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl----~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMV----EAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3334455666664 4688999999999998 77777777776777666655443 3344455555555554
No 330
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.20 E-value=78 Score=20.16 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHV 410 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~ 410 (569)
.-|++.|...|..+.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457777777777777666666654
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.91 E-value=2.1e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=19.5
Q ss_pred HHHHHHHhcCC-CCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038890 100 NIMIRANACKS-SETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKEC 147 (569)
Q Consensus 100 ~~li~~~~~~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 147 (569)
..++..+...+ ... .|.++++.+.+.+...+..|...-+..+
T Consensus 21 ~~Il~~L~~~~~~~~------sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 21 VKILQMLDSAEQRHM------SAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp HHHHHHHHCC-CCSB------CHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCC------CHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 34444444444 455 5666666665554333443433333333
No 332
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.82 E-value=4.3e+02 Score=23.50 Aligned_cols=45 Identities=9% Similarity=-0.098 Sum_probs=26.0
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 147 CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 147 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
.+..|+.+ +.+.+++.|..++..+ .+...++.|+.+-+.-+++.=
T Consensus 280 A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~G 324 (337)
T 4g8k_A 280 AVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSHG 324 (337)
T ss_dssp HHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHCc
Confidence 34556654 4455567777666543 333445678877666666543
No 333
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.79 E-value=6e+02 Score=24.88 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH--------HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 439 EPDVFVWGALLGGCQMHGNVELGE--------KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~~~~a~--------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
..|......+-..+...|-.++-+ .+++ +..|.+......|-..|.+.|++-+|.+++..+...+..
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~---r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~ 249 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLM---EKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNFD 249 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHH---HTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSC
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHH---hcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCC
Confidence 445555555666666666444322 2222 234556666777778888899999999999988877543
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.65 E-value=2.5e+02 Score=21.30 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 038890 127 QMLCTGISPDCLTFPFLLKECTKRL-DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV 188 (569)
Q Consensus 127 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 188 (569)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45667776654433 3445555555 6778999999998887766665554566777777654
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.62 E-value=3.2e+02 Score=24.82 Aligned_cols=217 Identities=12% Similarity=0.066 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh--HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHH
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI--GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISV 348 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 348 (569)
.|..-.+.|..+ +..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.-+++.-...+...-...+..
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 344444444433 4456666554444 3344333211 11233445566777777777665543322111122333
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH--------------------HHHHHHHHHHHccC--CHHHHHHHHHHhHHhcCC
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNH--------------------VTFVGLLSACAHSG--LVEKGRWCFVMMRHVYLV 406 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 406 (569)
.+..|+.+-+..+++.....|..|+. ...+.|..+ +..| ..+-+..+++. |.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~-----ga 164 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL-----GA 164 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH-----TC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc-----CC
Confidence 45667777776666665444444333 112333333 4455 55554444443 33
Q ss_pred CCCH---hHHHHHHHHHHHcCCHHHHHHHHHhCC------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 407 EPHV---YHYACMIDILSRAGLFSEAERLIRSMP------ME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 407 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.++. ...+. +...+..|+.+-+..+++... +. .|..-.. .+...+..|+.+-+..+++.-...+..+.
T Consensus 165 ~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~~~~d~ 242 (364)
T 3ljn_A 165 SPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMGIDVNMEDN 242 (364)
T ss_dssp CTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred CCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 3322 22233 334456788887777776531 11 1111111 22234466777665555554323222222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.-.+.| ....+.|+.+-+..+++.
T Consensus 243 ~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 243 EHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCHH-HHHHHhChHHHHHHHHHc
Confidence 222222 334456777766666654
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.22 E-value=1.3e+02 Score=22.81 Aligned_cols=45 Identities=9% Similarity=-0.089 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRL 151 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 151 (569)
.++..+...+... .|.++++.+.+.+...+..|.-..+..+...|
T Consensus 15 ~Il~~l~~~~~~~------sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFR------SAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCE------EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCC------CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4555555556666 78888888877664445555555555555544
No 337
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.18 E-value=3.2e+02 Score=23.41 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=68.4
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-------CcccHHHHHHHHH--ccCCcHHHHHHHHHHH
Q 038890 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-------DCLTFPFLLKECT--KRLDGLVGASVYGQVV 164 (569)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 164 (569)
++...++.|..+ ++.|+.+ ....+++...+.+... +..-.+.|..++. +.|+.+-+..+++...
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~------~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQ------ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSS------TTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CCcccchHHHHH-HHcCCHH------HHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 344555666655 6678888 7777888777665433 3344555555554 3588877777776653
Q ss_pred HhC---------CC-CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------------HHHHHHHHHHhcCC
Q 038890 165 KFG---------VC-DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVV----------------SWNAMIIGYLRSGD 218 (569)
Q Consensus 165 ~~g---------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~ 218 (569)
..+ .. .+..-.+.| ...+..|+.+-+..+++.-..++.. .-.+.+...+..|+
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTAL-HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred cccchhHHhhcccccccCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence 311 11 122222333 3345678887777777654332211 01123344455667
Q ss_pred HHHHHHHHH
Q 038890 219 LDVALDLFR 227 (569)
Q Consensus 219 ~~~A~~~~~ 227 (569)
.+-+.-+++
T Consensus 161 ~~~v~~Ll~ 169 (273)
T 2pnn_A 161 LAIVKFLLQ 169 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766666666
No 338
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.11 E-value=1.5e+02 Score=24.90 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..+..|.+.|.+++|.+++++..+..+.+...-.-|+..-.+..-+...+..|
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnF 171 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNF 171 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhc
No 339
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.09 E-value=3e+02 Score=21.15 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC
Q 038890 365 MEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL 425 (569)
Q Consensus 365 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (569)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 45566665554322 233333444555666666666632 223445555555566666654
No 340
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.04 E-value=3e+02 Score=22.51 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=39.9
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC----CCCcccHHHHHHHH
Q 038890 31 LRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK----RSDLYTYNIMIRAN 106 (569)
Q Consensus 31 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~ 106 (569)
.+..-...|+.+-+..++ +.|..++.....-.+ .+...+.. |+.+-+..+++.-. .++...++.+..+
T Consensus 28 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A- 99 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLL----EASADANIQDNMGRT-PLHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILA- 99 (223)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHT--TCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH-
T ss_pred hHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCC-HHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCCcHHHHH-
Confidence 334444667766554444 344333221001111 22333445 77777766666533 1233344444443
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHCCCCCCc
Q 038890 107 ACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137 (569)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 137 (569)
+..|+. ++++.+.+.|..++.
T Consensus 100 ~~~~~~----------~~~~~Ll~~g~~~~~ 120 (223)
T 2f8y_A 100 ARLAVE----------GMLEDLINSHADVNA 120 (223)
T ss_dssp HHHTCH----------HHHHHHHHTTCCTTC
T ss_pred HHhCcH----------HHHHHHHHcCCCCcC
Confidence 233333 245555556655543
Done!