BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038893
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58992|RUBR1_CHLTE Rubredoxin-1 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=rub1 PE=3 SV=1
Length = 69
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Query: 158 RATHICLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFARY 198
+A+ +C +CGYIY + PFD+LPD + CP C PK +F ++
Sbjct: 14 QASWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65
>sp|P24297|RUBR_PYRFU Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=rub PE=1 SV=2
Length = 54
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 159 ATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYD 199
A +C CGYIY F+ELPD +VCP C APK F + +
Sbjct: 2 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53
>sp|Q9V099|RUBR_PYRAB Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rub PE=1
SV=1
Length = 53
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 163 CLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFARYD 199
C CGYIY + F++LPD +VCP C APK F R +
Sbjct: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
>sp|P73068|RUBR_SYNY3 Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub
PE=3 SV=1
Length = 115
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 152 TEAQKARATHICLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRF 195
T A+ A H C CGY+Y + PF+ LP + CP C AP+ F
Sbjct: 9 TLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63
>sp|O26964|RF1_METTH Peptide chain release factor subunit 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=prf1 PE=3 SV=1
Length = 407
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYD-----VNTGKPIGSGLPP 212
R T+ C CG+ ++K +LPDT CP C + R D V + +G+ +
Sbjct: 324 RGTYECASCGH--RMEKTGRDLPDTETCPSCNDQMRLSDRRDMIDDLVEMAEEVGTEVEI 381
Query: 213 IGVI----IGLIAGIGAVGALLVY 232
I + L+ G +GA+L Y
Sbjct: 382 ISTETEEGMQLLRAFGGIGAILRY 405
>sp|O26258|RUBR_METTH Probable rubredoxin OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_155 PE=3 SV=1
Length = 63
Score = 38.5 bits (88), Expect = 0.039, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 163 CLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFARYD 199
C CGYIY +K PF++LP+T+ CP C A KK F D
Sbjct: 16 CRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKPLD 63
>sp|P04170|RUBR1_DESDA Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=rd1 PE=1 SV=1
Length = 45
Score = 38.1 bits (87), Expect = 0.049, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 161 HICLDCGYIYFLQK----PFDELPDTYVCPQCQAPKKRFA 196
++C CGY Y + PFD+LPD + CP C K +F+
Sbjct: 4 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFS 43
>sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 OS=Homo sapiens GN=RAPGEF2
PE=1 SV=1
Length = 1499
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 52 EVDKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
E P L G + G G+ + +V+ G A +AGLK GDQ+L
Sbjct: 394 EAPLPFILLGGSEKGFGIFVDSVDSGSKATEAGLKRGDQIL 434
>sp|P00272|RUBR2_PSEOL Rubredoxin-2 OS=Pseudomonas oleovorans GN=alkG PE=1 SV=3
Length = 173
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 131 ADVDVKRLPKRPAPPRFGRKLTEAQ--KARATHICLDCGYIYFLQ-----------KPFD 177
ADV + L K PPR ++AQ KA IC+ CG+IY F+
Sbjct: 96 ADVKGQDLYKT-QPPR-----SDAQGGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFE 149
Query: 178 ELPDTYVCPQCQAPKKRFARYD 199
++PD + CP C A K+ + Y+
Sbjct: 150 DIPDDWCCPDCGATKEDYVLYE 171
>sp|Q8TEU7|RPGF6_HUMAN Rap guanine nucleotide exchange factor 6 OS=Homo sapiens GN=RAPGEF6
PE=1 SV=2
Length = 1601
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 54 DKPLGLTL--GQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
+ PL +L G + G G+ + VE G AA +GLK GDQ++
Sbjct: 539 ESPLQFSLNGGSEKGFGIFVEGVEPGSKAADSGLKRGDQIM 579
>sp|Q9XBL8|RUBR_ANAVT Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=rub PE=3 SV=1
Length = 111
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 25/97 (25%)
Query: 163 CLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFAR---------YDVNT 202
C CGY+Y +K PF ELP + CP C A K F+ + N
Sbjct: 16 CRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENL 75
Query: 203 GKPIG-SGLPPIGVIIGLIAGIGAVGALL---VYGLQ 235
G +G + L P I LI G A+G L +YGLQ
Sbjct: 76 GYGLGVNKLTPAQKNI-LIFGALALGFLFFISLYGLQ 111
>sp|Q5L3G0|SPRTL_GEOKA Protein SprT-like OS=Geobacillus kaustophilus (strain HTA426)
GN=GK0235 PE=3 SV=1
Length = 149
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 132 DVDVKRLPKRPAPPRFGRKL---TEAQKARATHICLDCGYIYFLQKPFDELPDTYVCPQC 188
D D + L ++ PR+ R L T+A K T+IC CG Y ++ + D YVC +C
Sbjct: 85 DRDFRELLQKVGAPRYCRPLARNTKAPKTIYTYICTSCGLTYRRKRRIN--IDRYVCGRC 142
Query: 189 QAPKK 193
++ K
Sbjct: 143 RSKLK 147
>sp|Q8XMB2|RUBR1_CLOPE Rubredoxin-1 OS=Clostridium perfringens (strain 13 / Type A)
GN=rubR1 PE=3 SV=1
Length = 53
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 162 ICLDCGYIY--FLQKP---------FDELPDTYVCPQCQAPKKRFARYD 199
+C CGYIY + P F ++PDT+VCP C+ K F++ +
Sbjct: 5 VCDVCGYIYDPVVGDPDNGVAPGTKFKDIPDTWVCPLCKLDKTHFSKVE 53
>sp|Q9WWN1|RUBR_NOSS1 Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3
SV=2
Length = 111
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 163 CLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFAR---------YDVNT 202
C CGY+Y +K PF ELP + CP C A K F + N
Sbjct: 16 CRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENL 75
Query: 203 GKPIG-SGLPPIGVIIGLIAGIGAVGALL---VYGLQ 235
G +G + L P I LI G A+G L +YGLQ
Sbjct: 76 GYGLGVNKLTPAQKNI-LIFGALALGFLFFISLYGLQ 111
>sp|Q810W9|WHRN_RAT Whirlin OS=Rattus norvegicus GN=Dfnb31 PE=1 SV=1
Length = 920
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 55 KPLGLTL--GQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
+ LGLT+ G + G G+ IT V+ G A +GLK GDQ+L
Sbjct: 287 RSLGLTIRGGAEYGLGIYITGVDPGSEAESSGLKVGDQIL 326
>sp|Q80VW5|WHRN_MOUSE Whirlin OS=Mus musculus GN=Dfnb31 PE=1 SV=3
Length = 918
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 55 KPLGLTL--GQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
+ LGLT+ G + G G+ IT V+ G A +GLK GDQ+L
Sbjct: 289 RSLGLTIRGGAEYGLGIYITGVDPGSEAESSGLKVGDQIL 328
>sp|P00269|RUBR_DESVH Rubredoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB 8303) GN=rub PE=1 SV=2
Length = 52
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 161 HICLDCGYIYFLQ--------KP---FDELPDTYVCPQCQAPKKRF 195
++C CGY Y KP FD+LP +VCP C APK F
Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEF 49
>sp|Q58150|RUBR2_METJA Probable Rubredoxin-2 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0740 PE=3 SV=1
Length = 55
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 159 ATHICLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFARYD 199
A + C+ CG++Y K F++LPDT+ CPQC K F + D
Sbjct: 5 ARYQCM-CGWVYDEDKGEPSQNIPPGTKFEDLPDTFRCPQCGLGKNAFRKID 55
>sp|Q9JJ40|NHRF3_RAT Na(+)/H(+) exchange regulatory cofactor NHE-RF3 OS=Rattus
norvegicus GN=Pdzk1 PE=1 SV=2
Length = 523
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 63 QKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSV 122
+K G ++ +E G A KAGL GD+VL + F D+ A + + + +SV
Sbjct: 27 EKDTDGHLVRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVDLVRKS----GNSV 82
Query: 123 YFVVNRGGA-------DVDVKRLPKRPAPPRFGRK 150
+V G + VD+K L + P P K
Sbjct: 83 TLLVLDGDSYEKAVKHQVDLKELDQSPREPALNEK 117
>sp|P58993|RUBR2_CHLTE Rubredoxin-2 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=rub2 PE=3 SV=1
Length = 52
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 163 CLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFAR 197
C CGYIY + F+ LPD+++CP C A K+ F +
Sbjct: 6 CNICGYIYNPETGDPEGDIPAGTSFESLPDSWMCPVCGAGKEEFTK 51
>sp|P19500|RUBR_THETC Rubredoxin OS=Thermoanaerobacterium thermosaccharolyticum (strain
ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=Tthe_0549
PE=1 SV=1
Length = 52
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 163 CLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFAR 197
C CGYIY + F++LPD +VCP C K +F +
Sbjct: 6 CTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQFEK 51
>sp|F1M386|RPGF2_RAT Rap guanine nucleotide exchange factor 2 OS=Rattus norvegicus
GN=Rapgef2 PE=1 SV=2
Length = 1496
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 52 EVDKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
E P L G + G G+ + +V+ A +AGLK GDQ+L
Sbjct: 394 EAPLPFILLGGSEKGFGIFVDSVDSSSKATEAGLKRGDQIL 434
>sp|P48344|RUBL_BRAJA Probable rubredoxin HupI OS=Bradyrhizobium japonicum (strain USDA
110) GN=hupI PE=3 SV=1
Length = 69
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 175 PFDELPDTYVCPQCQAPKKRF 195
PF LP+ + CP C APK +F
Sbjct: 44 PFAALPEEWHCPNCDAPKSKF 64
>sp|Q9AL94|RUBR_CLOAB Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792
/ JCM 1419 / LMG 5710 / VKM B-1787) GN=rd PE=1 SV=1
Length = 54
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 161 HICLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRF 195
++C+ CGYIY + F+++PD +VCP C K +F
Sbjct: 4 YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQF 49
>sp|O57415|RREB1_CHICK Ras-responsive element-binding protein 1 OS=Gallus gallus GN=RREB1
PE=2 SV=2
Length = 1615
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 125 VVNRGGADVDVKRLPKRPAPPRFGRKLTEAQKARATHICLDCGYI 169
+ GG VK K PAP R GR+ E ++ ++++ C C I
Sbjct: 11 IAENGGTSQTVKSPSKSPAPNRIGRRNQETKEEKSSYTCPLCEKI 55
>sp|Q24008|INAD_DROME Inactivation-no-after-potential D protein OS=Drosophila
melanogaster GN=inaD PE=1 SV=2
Length = 674
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 7 LSLQESKRRVSDHFLAVSKTKNATRSLDNNKITARTAGASKTIEVEVDKPLGLTL----G 62
L + S+R+ +D + V K + D K ++T++V + LG+ +
Sbjct: 325 LVMITSRRKPNDEGMCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKH 384
Query: 63 QKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTA 114
+ G G+ I+ + G NA AG+K GD +L + E D G K A
Sbjct: 385 AEVGSGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRA 436
>sp|Q9Z4H7|HTRA_LACHE Serine protease Do-like HtrA OS=Lactobacillus helveticus GN=htrA
PE=3 SV=2
Length = 413
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 68 GVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVN 127
G+ I V G+AA AG+KSGD + +++ + ++ D+V VN
Sbjct: 343 GIYIAFVSRNGSAANAGIKSGDVITKVDGKKVEDVASLHSILYSHKV----GDTVNVTVN 398
Query: 128 RGGADVDVK 136
R G DVD+K
Sbjct: 399 RNGKDVDMK 407
>sp|Q9P202|WHRN_HUMAN Whirlin OS=Homo sapiens GN=DFNB31 PE=1 SV=3
Length = 907
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 55 KPLGLTL--GQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
+ LGLT+ G + G G+ IT V+ G A +GLK GDQ+L
Sbjct: 288 RSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQIL 327
>sp|Q63GW6|SPRTL_BACCZ Protein SprT-like OS=Bacillus cereus (strain ZK / E33L)
GN=BCE33L0230 PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|B7JLF2|SPRTL_BACC0 Protein SprT-like OS=Bacillus cereus (strain AH820) GN=BCAH820_0268
PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|Q81VF1|SPRTL_BACAN Protein SprT-like OS=Bacillus anthracis GN=BA_0257 PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|C3LK85|SPRTL_BACAC Protein SprT-like OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=BAMEG_0285 PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|C3PAU2|SPRTL_BACAA Protein SprT-like OS=Bacillus anthracis (strain A0248) GN=BAA_0283
PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4
Length = 1919
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
+PLG+++ GG+ ++ V G A +AGL+ GDQ+L
Sbjct: 1358 EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLL 1395
>sp|C1EUA1|SPRTL_BACC3 Protein SprT-like OS=Bacillus cereus (strain 03BB102) GN=BCA_0293
PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQKARATHI--CLDCGYIYFLQKPFDELPDTYVCPQCQ 189
D D + L K PRF +++ A+K + ++ C++C Y ++ + YVC +C+
Sbjct: 85 DKDFRELLKAVDAPRFCKRMVNAEKEKRVYVYECMECLLQYVRRRQIN--TKRYVCGKCK 142
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 51 VEVDKPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLG 109
V ++KPLG+ G + + A++ G NA KA + GD + S G L G
Sbjct: 79 VTLEKPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKKASDSSGGTLVEIKDFG 138
Query: 110 FTKTAIQAKPDSVYFVVNR 128
TK + K S V+ R
Sbjct: 139 DTKKMLVEKTGSFSLVLER 157
>sp|Q03009|HUPJ_RHOCA Probable rubredoxin HupJ OS=Rhodobacter capsulatus GN=hupJ PE=3
SV=2
Length = 278
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 175 PFDELPDTYVCPQCQAPKKRF 195
PF LP+ + CP C APK +F
Sbjct: 51 PFTALPEDWHCPNCDAPKAQF 71
>sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 OS=Mus musculus GN=Rapgef2
PE=1 SV=2
Length = 1496
Score = 32.7 bits (73), Expect = 2.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 52 EVDKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVL 92
E P L G + G G+ + +V+ A +AGLK GDQ+L
Sbjct: 394 EAPLPFILLGGSEKGFGIFVDSVDSCSKATEAGLKRGDQIL 434
>sp|Q6DJB3|DEFI8_XENTR Differentially expressed in FDCP 8 homolog OS=Xenopus tropicalis
GN=def8 PE=2 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 146 RFGRKLTEAQKARATHICLDC------GYIYFLQK------PFDELPDTYVCPQCQAPKK 193
R G LTE A HI LDC G++ L K PFD T VC C A
Sbjct: 356 RLGCSLTEIHTTFAKHIKLDCERCQAKGFVCELCKEGDILFPFDS--HTSVCQDCAAVFH 413
Query: 194 RFARYDVNTGKPIGSGL 210
R YD +T P + L
Sbjct: 414 RDCYYDNSTSCPRCTRL 430
>sp|Q9JWQ2|SPRTL_BACHD Protein SprT-like OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0532 PE=3
SV=1
Length = 151
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 132 DVDVKRLPKRPAPPRFGRKLTEAQ---KARATHICLDCGYIYFLQKPFDELPDTYVCPQC 188
D D K L K PR+ K+ AQ K R ++C CG + ++ D YVC +C
Sbjct: 85 DADFKLLLKEVDAPRYCAKIPHAQNSVKTRHLYVCTGCGTRFERKREVD--TSRYVCGKC 142
Query: 189 QAPKKR 194
K+
Sbjct: 143 NGRLKK 148
>sp|P00271|RUBR_MEGEL Rubredoxin OS=Megasphaera elsdenii PE=1 SV=1
Length = 52
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 163 CLDCGYIY----------FLQKPFDELPDTYVCPQCQAPKKRFARYD 199
C CGYIY F +LP +VCP C A K F + D
Sbjct: 6 CSICGYIYDEAEGDDGNVAAGTKFADLPADWVCPTCGADKDAFVKMD 52
>sp|Q58145|RUBR1_METJA Probable Rubredoxin-1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0735 PE=3 SV=1
Length = 80
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 11/40 (27%)
Query: 161 HICLDCGYIYFLQK-----------PFDELPDTYVCPQCQ 189
+ C CG++Y K PF+ELPDT++CP C+
Sbjct: 22 YKCKVCGWVYDPLKGDPSQNIPPKTPFEELPDTWICPVCR 61
>sp|Q6DDJ3|DFI8A_XENLA Differentially expressed in FDCP 8 homolog A OS=Xenopus laevis
GN=def8-a PE=2 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 146 RFGRKLTEAQKARATHICLDC------GYIYFLQK------PFDELPDTYVCPQCQAPKK 193
R G LTE A HI LDC G++ L K PFD T VC C A
Sbjct: 356 RLGCTLTEIHTTFAKHIKLDCERCQAKGFVCELCKEGDILFPFDS--HTSVCQDCAAVFH 413
Query: 194 RFARYDVNTGKP 205
R YD +T P
Sbjct: 414 RDCYYDNSTSCP 425
>sp|P14072|RUBR2_CLOPE Rubredoxin-2 OS=Clostridium perfringens (strain 13 / Type A)
GN=rubR2 PE=1 SV=2
Length = 53
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 162 ICLDCGYIY--FLQKP---------FDELPDTYVCPQCQAPKKRFA 196
IC CGYIY + P F ++PD +VCP C K +F+
Sbjct: 5 ICDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQFS 50
>sp|Q9WWW4|RUBR1_PSEPU Rubredoxin-1 OS=Pseudomonas putida GN=alkG PE=3 SV=1
Length = 175
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 162 ICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARY 198
IC+ CG+IY F+++P+ + CP C A K+ + Y
Sbjct: 123 ICITCGHIYDEALGDEVEGFAPGTRFEDIPNDWCCPDCGATKEDYVLY 170
>sp|Q9FDN6|HRB_MOOTA High molecular weight rubredoxin OS=Moorella thermoacetica (strain
ATCC 39073) GN=hrb PE=1 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 135 VKRLPKRPAPPRF--GRKLTEAQKARATHICLDCGYIYFLQK-----------PFDELPD 181
VKR P F GR+ + A + C C Y+Y + PF +LP+
Sbjct: 153 VKRGTTPKTAPTFTVGREKDKTALASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPE 212
Query: 182 TYVCPQCQAPKKRFAR 197
+ CP C A K F +
Sbjct: 213 DWTCPICGAGKDAFEQ 228
>sp|Q93PP8|RUBR2_DESDA Rubredoxin-2 OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=rd2 PE=1 SV=3
Length = 62
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 11/45 (24%)
Query: 164 LDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFAR 197
++CGY+Y + F++LP+ + CP C A KK F R
Sbjct: 13 VNCGYVYDPDRGDKRRKVPAGTKFEDLPEDWRCPVCGAGKKSFRR 57
>sp|Q6ZN54|DEFI8_HUMAN Differentially expressed in FDCP 8 homolog OS=Homo sapiens GN=DEF8
PE=2 SV=2
Length = 512
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 146 RFGRKLTEAQKARATHICLDC------GYIYFLQK------PFDELPDTYVCPQCQAPKK 193
R G LTE A HI LDC G++ L + PFD T VC C A
Sbjct: 421 RLGCSLTEIHTLFAKHIKLDCERCQAKGFVCELCREGDVLFPFDS--HTSVCADCSAVFH 478
Query: 194 RFARYDVNTGKPIGSGL 210
R YD +T P + L
Sbjct: 479 RDCYYDNSTTCPKCARL 495
>sp|P00270|RUBR_DESGI Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1
Length = 52
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 161 HICLDCGYIYFLQK-----------PFDELPDTYVCPQCQAPKKRFAR 197
++C CGY Y K F++LPD + CP C A K F +
Sbjct: 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 51
>sp|Q8XZI4|Y1411_RALSO Putative zinc metalloprotease RSc1411 OS=Ralstonia solanacearum
(strain GMI1000) GN=RSc1411 PE=3 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 18 DHFLAVSKTKNATRSLDNNKITARTAGASKTIEVEVDKPLGLTLGQKPGGGVVITAVEGG 77
D + V A R++ ++ + A+++ +V+V + +GL L GG V I V G
Sbjct: 187 DAIVQVRGADGAERTVRLRELPS----AARSPQVDVIEQVGLRL---LGGPVTIAEVLPG 239
Query: 78 GNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPD 120
+AGL+ GDQ++ F G PAD+ I+A P+
Sbjct: 240 SAGERAGLRRGDQIV---RFAGQ---PADQASDLIRWIRAMPE 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,058,327
Number of Sequences: 539616
Number of extensions: 4088798
Number of successful extensions: 11926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 11858
Number of HSP's gapped (non-prelim): 105
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)