Query 038893
Match_columns 235
No_of_seqs 249 out of 2106
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1efp_A ETF, protein (electron 100.0 1.4E-29 4.7E-34 230.5 4.4 107 5-138 185-299 (307)
2 1efv_A Electron transfer flavo 100.0 1.8E-29 6.3E-34 230.4 3.9 107 5-138 190-304 (315)
3 1o97_D Electron transferring f 99.9 3E-29 1E-33 229.5 2.6 107 5-138 195-310 (320)
4 4rxn_A Rubredoxin; electron tr 99.6 6E-17 2E-21 113.4 3.6 43 158-200 1-54 (54)
5 2v3b_B Rubredoxin 2, rubredoxi 99.6 3E-16 1E-20 110.1 4.1 43 158-200 1-54 (55)
6 1e8j_A Rubredoxin; iron-sulfur 99.6 3.4E-16 1.2E-20 108.7 4.2 41 158-198 1-52 (52)
7 1dx8_A Rubredoxin; electron tr 99.6 4.4E-16 1.5E-20 114.2 4.9 53 157-210 4-67 (70)
8 6rxn_A Rubredoxin; electron tr 99.6 3E-16 1E-20 106.5 2.9 40 158-197 2-45 (46)
9 2kn9_A Rubredoxin; metalloprot 99.6 1E-15 3.5E-20 115.1 5.3 44 157-200 24-78 (81)
10 1yk4_A Rubredoxin, RD; electro 99.6 8E-16 2.8E-20 106.8 3.7 40 160-199 2-52 (52)
11 1s24_A Rubredoxin 2; electron 99.6 2.1E-15 7.3E-20 114.8 4.5 45 156-200 31-86 (87)
12 1lko_A Rubrerythrin all-iron(I 98.7 3.1E-09 1E-13 90.3 2.5 37 158-200 153-189 (191)
13 3pwf_A Rubrerythrin; non heme 98.7 5.2E-09 1.8E-13 87.8 3.8 33 159-198 137-169 (170)
14 1yuz_A Nigerythrin; rubrythrin 98.7 5.5E-09 1.9E-13 89.8 4.0 34 158-198 169-202 (202)
15 2pa1_A PDZ and LIM domain prot 96.8 0.0055 1.9E-07 43.9 7.6 76 49-128 4-83 (87)
16 2kdx_A HYPA, hydrogenase/ureas 96.7 0.0012 4.1E-08 51.6 4.0 33 158-196 71-104 (119)
17 3a43_A HYPD, hydrogenase nicke 96.6 0.00075 2.6E-08 54.6 2.4 37 158-194 68-119 (139)
18 1rgw_A ZAsp protein; PDZ, cyph 96.6 0.0075 2.6E-07 42.8 7.3 46 49-94 3-52 (85)
19 2pkt_A PDZ and LIM domain prot 96.5 0.0094 3.2E-07 43.0 7.4 71 54-128 12-84 (91)
20 2ejy_A 55 kDa erythrocyte memb 96.4 0.0081 2.8E-07 45.2 6.7 40 55-94 24-64 (97)
21 2vwr_A Ligand of NUMB protein 96.3 0.0078 2.7E-07 43.8 6.0 46 49-94 5-57 (95)
22 2jil_A GRIP1 protein, glutamat 96.2 0.016 5.4E-07 42.2 7.2 76 49-128 5-90 (97)
23 1wh1_A KIAA1095 protein; PDZ d 96.2 0.016 5.4E-07 44.6 7.5 76 56-137 33-114 (124)
24 2uzc_A Human pdlim5, PDZ and L 96.2 0.021 7.3E-07 40.7 7.7 46 49-94 5-54 (88)
25 1n7e_A AMPA receptor interacti 96.2 0.0091 3.1E-07 43.7 5.8 47 48-94 6-58 (97)
26 2fcf_A Multiple PDZ domain pro 96.1 0.022 7.7E-07 41.8 7.8 58 67-128 39-97 (103)
27 1qav_A Alpha-1 syntrophin (res 96.1 0.0077 2.6E-07 43.4 5.1 49 46-94 3-58 (90)
28 2db5_A INAD-like protein; PDZ 96.1 0.041 1.4E-06 42.3 9.5 94 29-128 9-113 (128)
29 1kwa_A Hcask/LIN-2 protein; PD 96.1 0.0082 2.8E-07 43.6 5.1 40 55-94 13-53 (88)
30 2q3g_A PDZ and LIM domain prot 96.1 0.011 3.7E-07 42.5 5.7 46 49-94 5-54 (89)
31 2dmz_A INAD-like protein; PDZ 96.0 0.037 1.3E-06 42.5 8.8 79 49-131 17-107 (129)
32 2o2t_A Multiple PDZ domain pro 96.0 0.017 6E-07 43.6 6.7 82 46-130 19-110 (117)
33 2he4_A Na(+)/H(+) exchange reg 95.9 0.021 7.3E-07 41.0 6.7 40 55-94 15-55 (90)
34 2rcz_A Tight junction protein 95.9 0.014 4.8E-07 40.6 5.4 36 55-94 13-49 (81)
35 1wf7_A Enigma homologue protei 95.9 0.033 1.1E-06 41.1 7.7 79 49-131 7-89 (103)
36 1g9o_A NHE-RF; PDZ domain, com 95.9 0.012 4E-07 42.4 5.0 41 55-95 14-55 (91)
37 1m5z_A GRIP, AMPA receptor int 95.8 0.021 7.2E-07 41.0 6.3 46 49-94 8-59 (91)
38 1ihj_A INAD; intermolecular di 95.8 0.034 1.2E-06 40.4 7.3 46 49-94 7-65 (98)
39 2d90_A PDZ domain containing p 95.7 0.026 8.8E-07 41.6 6.6 76 49-128 8-87 (102)
40 2w4f_A Protein LAP4; structura 95.7 0.041 1.4E-06 39.8 7.5 41 55-95 14-62 (97)
41 1uit_A Human discs large 5 pro 95.7 0.013 4.4E-07 44.4 4.8 40 55-94 30-69 (117)
42 2iwn_A Multiple PDZ domain pro 95.7 0.021 7.2E-07 41.1 5.7 47 49-95 6-62 (97)
43 4amh_A Disks large homolog 1; 95.7 0.021 7.1E-07 42.8 5.8 70 55-130 13-92 (106)
44 1vb7_A PDZ and LIM domain 2; P 95.7 0.021 7.2E-07 41.6 5.7 77 49-129 8-88 (94)
45 2fne_A Multiple PDZ domain pro 95.6 0.033 1.1E-06 42.7 7.1 76 49-128 27-111 (117)
46 1wha_A KIAA0147 protein, scrib 95.6 0.045 1.5E-06 40.5 7.6 76 49-128 9-96 (105)
47 2opg_A Multiple PDZ domain pro 95.6 0.028 9.7E-07 40.9 6.2 47 49-95 6-59 (98)
48 3cyy_A Tight junction protein 95.6 0.019 6.7E-07 41.1 5.2 68 55-130 15-83 (92)
49 2jxo_A Ezrin-radixin-moesin-bi 95.6 0.019 6.4E-07 42.0 5.2 41 55-95 20-61 (98)
50 3tsv_A Tight junction protein 95.6 0.017 6E-07 44.8 5.3 42 53-94 37-78 (124)
51 2qg1_A Multiple PDZ domain pro 95.5 0.023 8E-07 40.9 5.6 46 49-94 6-57 (92)
52 2iwq_A Multiple PDZ domain pro 95.5 0.053 1.8E-06 41.9 7.9 91 33-128 13-117 (123)
53 2la8_A Inactivation-NO-after-p 95.4 0.025 8.7E-07 42.6 5.7 75 49-128 4-83 (106)
54 2i04_A Membrane-associated gua 95.4 0.032 1.1E-06 39.5 5.7 40 55-94 11-53 (85)
55 2dlu_A INAD-like protein; PDZ 95.3 0.018 6.2E-07 43.1 4.4 40 55-94 26-66 (111)
56 1va8_A Maguk P55 subfamily mem 95.3 0.033 1.1E-06 42.1 5.9 68 56-128 38-106 (113)
57 1nf3_C PAR-6B; semi-CRIB motif 95.3 0.051 1.7E-06 42.0 7.0 56 67-128 65-123 (128)
58 2ego_A General receptor for ph 95.3 0.021 7.3E-07 41.7 4.6 47 49-95 6-65 (96)
59 2eeh_A PDZ domain-containing p 95.3 0.041 1.4E-06 40.4 6.2 67 57-128 24-92 (100)
60 3r68_A Na(+)/H(+) exchange reg 95.3 0.026 9E-07 40.7 5.0 41 55-95 16-57 (95)
61 2e7k_A Maguk P55 subfamily mem 95.3 0.053 1.8E-06 39.4 6.7 66 56-128 19-86 (91)
62 2qkv_A Inactivation-NO-after-p 95.2 0.03 1E-06 41.1 5.3 38 56-94 21-59 (96)
63 3i4w_A Disks large homolog 4; 95.2 0.023 7.8E-07 41.8 4.7 40 55-94 22-63 (104)
64 3cbz_A Dishevelled-2; PDZ doma 95.2 0.043 1.5E-06 41.2 6.1 75 48-128 6-94 (108)
65 1d5g_A Human phosphatase HPTP1 95.2 0.038 1.3E-06 40.0 5.7 46 49-94 7-61 (96)
66 3ngh_A PDZ domain-containing p 95.2 0.026 8.8E-07 41.8 4.8 72 55-130 13-85 (106)
67 1uez_A KIAA1526 protein; PDZ d 95.2 0.035 1.2E-06 40.8 5.6 39 56-94 22-62 (101)
68 1x6d_A Interleukin-16; PDZ dom 95.1 0.056 1.9E-06 40.9 6.8 73 55-131 27-104 (119)
69 1q7x_A PDZ2B domain of PTP-BAS 95.1 0.056 1.9E-06 40.1 6.6 76 49-128 11-100 (108)
70 2lcq_A Putative toxin VAPC6; P 95.1 0.0078 2.7E-07 49.0 1.8 27 159-191 131-157 (165)
71 2eeg_A PDZ and LIM domain prot 95.1 0.016 5.5E-07 42.2 3.4 45 50-94 11-59 (94)
72 3qik_A Phosphatidylinositol 3, 95.1 0.034 1.2E-06 42.8 5.3 73 51-127 24-98 (101)
73 2vz5_A TAX1-binding protein 3; 95.0 0.037 1.3E-06 43.8 5.6 61 66-130 63-124 (139)
74 2kjd_A Sodium/hydrogen exchang 95.0 0.043 1.5E-06 41.9 5.7 70 55-130 20-93 (128)
75 2awx_A Synapse associated prot 94.9 0.056 1.9E-06 40.0 6.2 45 50-94 6-61 (105)
76 2v90_A PDZ domain-containing p 94.9 0.033 1.1E-06 40.4 4.8 41 55-95 14-58 (96)
77 2g5m_B Neurabin-2; spinophilin 94.9 0.05 1.7E-06 40.8 5.8 78 49-130 6-95 (113)
78 2dm8_A INAD-like protein; PDZ 94.9 0.029 9.9E-07 42.2 4.5 70 55-130 28-103 (116)
79 2r4h_A Membrane-associated gua 94.9 0.056 1.9E-06 40.7 6.1 49 46-94 23-77 (112)
80 2jre_A C60-1 PDZ domain peptid 94.8 0.055 1.9E-06 40.1 5.9 46 49-94 14-72 (108)
81 2q9v_A Membrane-associated gua 94.8 0.06 2.1E-06 38.5 5.8 40 55-94 13-55 (90)
82 1w9e_A Syntenin 1; cell adhesi 94.8 0.044 1.5E-06 43.8 5.5 50 45-95 2-55 (166)
83 1mfg_A ERB-B2 interacting prot 94.8 0.053 1.8E-06 39.3 5.5 47 47-94 3-61 (95)
84 1wi4_A Synip, syntaxin binding 94.7 0.057 2E-06 40.7 5.8 44 51-94 19-69 (109)
85 3l4f_D SH3 and multiple ankyri 94.7 0.048 1.6E-06 42.7 5.5 27 68-94 66-92 (132)
86 1um1_A KIAA1849 protein, RSGI 94.7 0.064 2.2E-06 39.9 6.0 78 49-130 10-96 (110)
87 1uhp_A Hypothetical protein KI 94.7 0.072 2.5E-06 39.5 6.3 46 49-94 10-69 (107)
88 2djt_A Unnamed protein product 94.7 0.043 1.5E-06 40.4 5.0 47 49-95 13-67 (104)
89 2d92_A INAD-like protein; PDZ 94.7 0.035 1.2E-06 41.5 4.5 40 55-94 26-72 (108)
90 2koj_A Partitioning defective 94.7 0.043 1.5E-06 40.9 5.0 68 55-128 22-99 (111)
91 1tp5_A Presynaptic density pro 94.7 0.051 1.7E-06 41.1 5.4 45 50-94 17-66 (119)
92 2daz_A INAD-like protein; PDZ 94.6 0.051 1.7E-06 41.6 5.4 75 50-128 28-109 (124)
93 2eno_A Synaptojanin-2-binding 94.6 0.063 2.2E-06 40.8 5.9 76 51-130 21-107 (120)
94 1wf8_A Neurabin-I; PDZ domain, 94.6 0.033 1.1E-06 41.5 4.1 45 50-94 12-68 (107)
95 1v5l_A PDZ and LIM domain 3; a 94.6 0.022 7.7E-07 42.2 3.2 72 53-128 13-86 (103)
96 2i1n_A Discs, large homolog 3; 94.6 0.049 1.7E-06 40.0 5.0 75 50-128 7-92 (102)
97 3o46_A Maguk P55 subfamily mem 94.6 0.047 1.6E-06 39.5 4.8 67 55-127 15-85 (93)
98 2fe5_A Presynaptic protein SAP 94.5 0.055 1.9E-06 38.9 5.1 45 50-94 6-61 (94)
99 2eaq_A LIM domain only protein 94.5 0.048 1.6E-06 39.0 4.7 38 56-94 18-55 (90)
100 1wi2_A Riken cDNA 2700099C19; 94.5 0.038 1.3E-06 41.0 4.3 47 49-95 17-69 (104)
101 2yt7_A Amyloid beta A4 precurs 94.5 0.076 2.6E-06 39.2 5.9 50 56-108 22-78 (101)
102 3e17_A Tight junction protein 94.5 0.051 1.7E-06 39.3 4.8 57 66-128 20-79 (88)
103 2byg_A Channel associated prot 94.5 0.085 2.9E-06 40.2 6.3 75 50-128 27-112 (117)
104 2dkr_A LIN-7 homolog B; LIN-7B 94.4 0.047 1.6E-06 39.2 4.5 40 55-94 16-58 (93)
105 2gmg_A Hypothetical protein PF 94.4 0.016 5.3E-07 45.3 2.0 28 158-190 65-92 (105)
106 1v62_A KIAA1719 protein; struc 94.4 0.045 1.6E-06 41.6 4.6 68 55-128 27-100 (117)
107 4e34_A Golgi-associated PDZ an 94.4 0.041 1.4E-06 39.1 4.1 40 55-94 14-56 (87)
108 3hpk_A Protein interacting wit 94.4 0.07 2.4E-06 40.8 5.6 84 41-128 12-103 (125)
109 1q3o_A Shank1; PDZ, GKAP, pept 94.3 0.057 2E-06 40.2 5.0 27 68-94 46-72 (109)
110 1uf1_A KIAA1526 protein; PDZ d 94.3 0.19 6.6E-06 38.4 8.1 77 49-130 24-104 (128)
111 2z17_A Pleckstrin homology SEC 94.3 0.052 1.8E-06 40.1 4.6 29 66-94 47-75 (104)
112 1qau_A Neuronal nitric oxide s 94.3 0.1 3.4E-06 38.9 6.3 78 49-130 3-87 (112)
113 1ueq_A Membrane associated gua 94.3 0.062 2.1E-06 41.1 5.2 46 49-94 21-72 (123)
114 2vsp_A PDZ domain-containing p 94.2 0.032 1.1E-06 40.2 3.2 40 55-94 14-54 (91)
115 2jik_A Synaptojanin-2 binding 94.2 0.064 2.2E-06 39.2 4.9 45 50-94 10-65 (101)
116 2f5y_A Regulator of G-protein 94.2 0.065 2.2E-06 38.6 4.8 37 57-95 16-52 (91)
117 3khf_A Microtubule-associated 94.2 0.089 3.1E-06 38.3 5.6 28 68-95 35-62 (99)
118 3b76_A E3 ubiquitin-protein li 94.1 0.064 2.2E-06 41.3 5.0 70 55-128 36-111 (118)
119 1x5q_A LAP4 protein; PDZ domai 94.1 0.057 1.9E-06 40.2 4.5 40 56-95 27-74 (110)
120 2edp_A Fragment, shroom family 94.0 0.095 3.3E-06 38.6 5.6 74 50-128 14-92 (100)
121 3axa_A Afadin, nectin-3, prote 94.0 0.065 2.2E-06 39.6 4.6 46 49-94 13-66 (106)
122 3k1r_A Harmonin; protein-prote 94.0 0.064 2.2E-06 44.2 5.0 77 50-131 87-169 (192)
123 1v5q_A GRIP1 homolog, glutamat 93.9 0.11 3.9E-06 39.6 6.0 77 48-128 16-105 (122)
124 3kzd_A TIAM-1, T-lymphoma inva 93.9 0.14 4.7E-06 38.6 6.3 39 56-94 21-62 (94)
125 2pzd_A Serine protease HTRA2; 93.9 0.11 3.8E-06 38.8 5.8 59 66-131 34-92 (113)
126 2ehr_A INAD-like protein; PDZ 93.9 0.12 4.1E-06 38.9 6.0 58 67-128 50-108 (117)
127 3gge_A PDZ domain-containing p 93.9 0.062 2.1E-06 40.8 4.3 44 50-93 8-55 (95)
128 1ufx_A KIAA1526 protein; PDZ d 93.7 0.092 3.2E-06 39.2 5.1 46 49-94 8-60 (103)
129 1uep_A Membrane associated gua 93.7 0.045 1.5E-06 40.5 3.3 40 55-94 20-62 (103)
130 2dls_A PDZ-rhogef, RHO guanine 93.7 0.073 2.5E-06 38.6 4.4 43 50-94 11-56 (93)
131 3gsl_A Disks large homolog 4; 93.7 0.14 4.8E-06 40.9 6.4 74 51-128 9-93 (196)
132 2edz_A PDZ domain-containing p 93.6 0.077 2.6E-06 39.9 4.5 72 55-130 25-97 (114)
133 2h2b_A Tight junction protein 93.6 0.1 3.4E-06 38.6 5.0 44 50-94 10-65 (107)
134 4ayb_P DNA-directed RNA polyme 93.6 0.029 9.9E-07 37.9 1.7 31 158-190 1-31 (48)
135 1uju_A Scribble; PDZ domain, c 93.5 0.072 2.5E-06 39.8 4.2 28 67-94 44-72 (111)
136 2kom_A Partitioning defective 93.5 0.088 3E-06 40.3 4.8 40 56-95 42-87 (121)
137 1wfg_A Regulating synaptic mem 93.5 0.077 2.6E-06 41.3 4.5 39 56-94 49-93 (131)
138 2eei_A PDZ domain-containing p 93.5 0.038 1.3E-06 40.9 2.5 40 55-94 19-59 (106)
139 2dc2_A GOPC, golgi associated 93.5 0.14 4.9E-06 37.8 5.8 70 55-128 21-93 (103)
140 3gsl_A Disks large homolog 4; 93.5 0.37 1.3E-05 38.4 8.6 58 67-128 130-188 (196)
141 1ujd_A KIAA0559 protein; PDZ d 93.4 0.09 3.1E-06 39.9 4.5 69 56-128 31-107 (117)
142 2kv8_A RGS12, regulator of G-p 93.3 0.067 2.3E-06 37.7 3.5 43 50-94 5-50 (83)
143 1i16_A Interleukin 16, LCF; cy 93.3 0.07 2.4E-06 41.4 3.9 76 49-128 31-116 (130)
144 1wg6_A Hypothetical protein (r 93.3 0.054 1.8E-06 41.9 3.2 47 49-95 27-84 (127)
145 3sfj_A TAX1-binding protein 3; 93.2 0.074 2.5E-06 39.0 3.7 29 66-94 44-72 (104)
146 2gzv_A PRKCA-binding protein; 93.2 0.1 3.5E-06 39.6 4.7 38 57-94 38-78 (114)
147 2vsv_A Rhophilin-2; scaffold p 93.2 0.094 3.2E-06 40.0 4.4 38 55-94 34-71 (109)
148 2cs5_A Tyrosine-protein phosph 93.2 0.094 3.2E-06 39.6 4.4 45 50-94 18-70 (119)
149 2kpk_A Membrane-associated gua 93.2 0.099 3.4E-06 40.4 4.6 40 55-94 29-71 (129)
150 3egg_C Spinophilin; PP1, serin 93.1 0.23 7.9E-06 40.7 7.0 57 39-95 72-140 (170)
151 2yub_A LIMK-2, LIM domain kina 93.1 0.17 5.9E-06 38.9 5.8 71 56-130 28-105 (118)
152 3tsz_A Tight junction protein 93.1 0.12 4.1E-06 47.8 5.8 42 54-95 18-59 (391)
153 1r6j_A Syntenin 1; PDZ, membra 92.9 0.12 4.1E-06 37.8 4.4 43 47-94 4-50 (82)
154 1v6b_A Harmonin isoform A1; st 92.9 0.18 6.3E-06 38.3 5.7 41 54-94 27-71 (118)
155 1x5n_A Harmonin; PDZ domain, u 92.8 0.094 3.2E-06 39.3 3.8 41 55-95 27-69 (114)
156 3qe1_A Sorting nexin-27, G pro 92.8 0.09 3.1E-06 38.8 3.7 29 66-94 42-70 (107)
157 3id1_A Regulator of sigma E pr 92.8 0.22 7.6E-06 36.5 5.8 57 68-130 3-61 (95)
158 2iwo_A Multiple PDZ domain pro 92.8 0.098 3.3E-06 40.1 4.0 70 56-129 37-112 (120)
159 2qt5_A Glutamate receptor-inte 92.7 0.22 7.4E-06 40.7 6.2 71 56-130 118-195 (200)
160 1b8q_A Protein (neuronal nitri 92.4 0.15 5.1E-06 38.9 4.6 72 55-130 20-94 (127)
161 1wfv_A Membrane associated gua 92.2 0.073 2.5E-06 38.9 2.5 40 56-95 23-65 (103)
162 1y7n_A Amyloid beta A4 precurs 92.2 0.13 4.6E-06 37.5 3.9 35 55-94 24-58 (90)
163 3nfk_A Tyrosine-protein phosph 92.1 0.18 6.1E-06 37.2 4.6 40 55-94 29-72 (107)
164 3h0g_I DNA-directed RNA polyme 92.1 0.16 5.4E-06 39.4 4.4 41 159-199 25-89 (113)
165 1vae_A Rhophilin 2, rhophilin, 92.0 0.25 8.7E-06 37.4 5.4 66 55-128 26-94 (111)
166 3shw_A Tight junction protein 91.8 0.27 9.2E-06 46.8 6.5 42 54-95 10-51 (468)
167 2d8i_A T-cell lymphoma invasio 91.7 0.12 4E-06 39.7 3.3 39 56-94 30-71 (114)
168 2p3w_A Probable serine proteas 91.6 0.28 9.7E-06 36.5 5.2 58 66-130 34-91 (112)
169 4a8c_A Periplasmic PH-dependen 91.5 0.24 8.1E-06 46.1 5.7 67 67-139 363-429 (436)
170 1twf_L ABC10-alpha, DNA-direct 91.5 0.14 4.8E-06 37.0 3.2 28 158-190 26-53 (70)
171 1whd_A RGS3, regulator of G-pr 91.4 0.067 2.3E-06 39.4 1.5 38 56-95 27-64 (100)
172 1uew_A Membrane associated gua 91.3 0.16 5.6E-06 38.1 3.6 70 55-128 22-101 (114)
173 1n7t_A 99-MER peptide of densi 91.1 0.14 4.8E-06 37.6 3.0 39 55-94 21-69 (103)
174 1p1d_A PDZ45, glutamate recept 91.0 0.39 1.3E-05 39.1 5.9 46 49-94 8-64 (196)
175 3r0h_A INAD, inactivation-NO-a 90.8 0.52 1.8E-05 38.3 6.5 71 55-129 29-107 (206)
176 1um7_A Synapse-associated prot 90.7 0.085 2.9E-06 39.2 1.5 46 49-94 17-67 (113)
177 3bpu_A Membrane-associated gua 90.7 0.35 1.2E-05 34.3 4.7 44 49-94 5-52 (88)
178 2qbw_A PDZ-fibronectin fusion 90.7 0.37 1.3E-05 38.9 5.5 58 66-128 23-80 (195)
179 3i18_A LMO2051 protein; alpha- 90.5 0.5 1.7E-05 34.7 5.6 58 66-130 6-65 (100)
180 2csj_A TJP2 protein; PDZ domai 90.3 0.23 7.9E-06 37.4 3.7 69 55-128 26-102 (117)
181 4fgm_A Aminopeptidase N family 90.0 0.53 1.8E-05 45.9 6.9 70 57-134 487-558 (597)
182 2yuy_A RHO GTPase activating p 89.6 0.15 5.1E-06 39.1 2.1 28 67-94 61-88 (126)
183 3r0h_A INAD, inactivation-NO-a 89.5 0.35 1.2E-05 39.3 4.4 66 56-128 126-194 (206)
184 2l97_A HTRA, putative serine p 89.5 0.44 1.5E-05 37.1 4.7 59 66-131 56-116 (134)
185 1p1d_A PDZ45, glutamate recept 89.4 0.55 1.9E-05 38.2 5.5 59 66-128 134-193 (196)
186 2lob_A Golgi-associated PDZ an 89.0 0.069 2.4E-06 40.6 0.0 36 56-91 40-78 (112)
187 2i6v_A General secretion pathw 89.3 0.3 1E-05 34.9 3.5 57 68-130 20-78 (87)
188 2kjp_A Uncharacterized protein 89.2 0.15 5E-06 37.5 1.7 58 68-132 2-61 (91)
189 1wif_A RSGI RUH-020, riken cDN 89.2 0.16 5.4E-06 39.9 2.0 68 56-128 39-109 (126)
190 1twf_I B12.6, DNA-directed RNA 88.8 0.55 1.9E-05 36.8 4.8 42 158-199 24-89 (122)
191 2zpm_A Regulator of sigma E pr 88.7 0.31 1.1E-05 34.7 3.2 58 69-132 6-64 (91)
192 2qt5_A Glutamate receptor-inte 88.7 0.39 1.3E-05 39.1 4.2 68 55-128 19-91 (200)
193 3rle_A Golgi reassembly-stacki 88.0 4.7 0.00016 33.3 10.4 55 67-128 112-168 (209)
194 3pv2_A DEGQ; trypsin fold, PDZ 88.0 0.61 2.1E-05 43.7 5.4 58 67-130 386-443 (451)
195 2edv_A FERM and PDZ domain-con 87.5 0.25 8.4E-06 36.1 2.0 43 49-94 10-57 (96)
196 2krg_A Na(+)/H(+) exchange reg 87.4 0.39 1.3E-05 40.9 3.4 72 55-130 20-93 (216)
197 2i4s_A General secretion pathw 87.2 1 3.4E-05 33.3 5.3 57 68-130 38-96 (105)
198 3h0g_L DNA-directed RNA polyme 87.1 0.29 1E-05 34.7 2.1 29 158-191 19-47 (63)
199 3qo6_A Protease DO-like 1, chl 87.0 1.3 4.6E-05 39.5 6.9 58 67-130 251-321 (348)
200 1ujv_A Membrane associated gua 86.7 0.64 2.2E-05 33.9 3.9 73 49-128 12-89 (96)
201 2kl1_A YLBL protein; structure 86.4 0.44 1.5E-05 34.8 2.8 62 66-134 4-67 (94)
202 1z87_A Alpha-1-syntrophin; pro 86.4 0.59 2E-05 41.2 4.1 79 49-131 79-164 (263)
203 3irb_A Uncharacterized protein 86.3 0.31 1.1E-05 39.2 2.1 34 156-197 43-76 (145)
204 1lcy_A HTRA2 serine protease; 86.1 1 3.6E-05 39.9 5.7 58 67-131 256-313 (325)
205 2epr_A POZ-, at HOOK-, and zin 85.6 0.53 1.8E-05 29.1 2.5 32 158-189 10-47 (48)
206 3stj_A Protease DEGQ; serine p 85.3 0.96 3.3E-05 40.7 5.1 60 66-131 262-323 (345)
207 1y8t_A Hypothetical protein RV 85.3 1.1 3.9E-05 39.3 5.4 68 57-130 231-302 (324)
208 1fc6_A Photosystem II D1 prote 84.7 0.92 3.1E-05 41.2 4.7 39 57-95 87-127 (388)
209 2gnr_A Conserved hypothetical 84.6 0.45 1.5E-05 38.5 2.3 35 157-199 44-78 (145)
210 3v2d_5 50S ribosomal protein L 82.2 1.1 3.9E-05 31.2 3.3 48 135-191 3-52 (60)
211 2zjr_Z 50S ribosomal protein L 82.1 1.3 4.3E-05 31.0 3.5 50 135-193 3-54 (60)
212 3rle_A Golgi reassembly-stacki 81.9 0.85 2.9E-05 37.9 3.0 30 66-95 15-45 (209)
213 2akl_A PHNA-like protein PA012 81.6 0.32 1.1E-05 39.3 0.3 24 161-191 28-53 (138)
214 3k50_A Putative S41 protease; 81.3 1.3 4.5E-05 41.1 4.3 28 68-95 91-118 (403)
215 4a8c_A Periplasmic PH-dependen 80.8 1.9 6.5E-05 39.9 5.3 61 66-132 262-324 (436)
216 2epq_A POZ-, at HOOK-, and zin 80.1 0.28 9.7E-06 29.8 -0.4 30 160-189 10-45 (45)
217 1te0_A Protease DEGS; two doma 80.0 1 3.6E-05 39.6 3.1 61 65-131 242-304 (318)
218 3suz_A Amyloid beta A4 precurs 79.7 1.1 3.8E-05 41.0 3.2 56 50-108 207-273 (388)
219 1dl6_A Transcription factor II 79.7 2.3 7.8E-05 29.1 4.1 16 158-173 28-43 (58)
220 2emf_A Zinc finger protein 484 79.3 1 3.6E-05 27.3 2.1 30 159-188 11-46 (46)
221 2ene_A Zinc finger protein 347 79.2 1.3 4.4E-05 26.7 2.5 30 159-188 11-46 (46)
222 2ysp_A Zinc finger protein 224 79.2 1.2 4E-05 26.9 2.3 30 159-188 11-46 (46)
223 2eq0_A Zinc finger protein 347 79.1 1.2 4.3E-05 26.8 2.4 30 159-188 11-46 (46)
224 2em5_A ZFP-95, zinc finger pro 79.1 1.2 4.1E-05 27.0 2.3 30 159-188 11-46 (46)
225 2aus_D NOP10, ribosome biogene 78.6 0.9 3.1E-05 31.9 1.7 21 160-191 5-26 (60)
226 2ctu_A Zinc finger protein 483 78.6 0.78 2.7E-05 30.0 1.4 31 159-190 17-47 (73)
227 3qt1_I DNA-directed RNA polyme 78.2 0.85 2.9E-05 36.5 1.7 41 158-198 44-108 (133)
228 2en1_A Zinc finger protein 224 77.8 1.1 3.9E-05 27.0 1.9 30 159-188 11-46 (46)
229 2ytg_A ZFP-95, zinc finger pro 77.5 1.5 5E-05 26.5 2.4 30 159-188 11-46 (46)
230 2ema_A Zinc finger protein 347 77.4 1 3.5E-05 27.2 1.6 30 159-188 11-46 (46)
231 2apo_B Ribosome biogenesis pro 77.1 1 3.5E-05 31.6 1.7 22 160-191 6-27 (60)
232 2ep0_A Zinc finger protein 28 77.0 1.5 5.1E-05 26.4 2.3 30 159-188 11-46 (46)
233 2el4_A Zinc finger protein 268 76.9 1.3 4.6E-05 26.6 2.1 30 159-188 11-46 (46)
234 3gmt_A Adenylate kinase; ssgci 76.8 1.8 6.2E-05 37.3 3.5 34 156-191 127-160 (230)
235 2em7_A Zinc finger protein 224 76.6 1.2 4.1E-05 26.9 1.8 30 159-188 11-46 (46)
236 1vq8_Z 50S ribosomal protein L 76.4 0.33 1.1E-05 36.1 -1.1 27 158-190 25-53 (83)
237 1ltl_A DNA replication initiat 76.2 1.9 6.6E-05 37.7 3.6 32 158-192 132-166 (279)
238 2ep2_A Zinc finger protein 484 76.1 1.2 4E-05 26.9 1.6 30 159-188 11-46 (46)
239 2eme_A Zinc finger protein 473 76.1 1.1 3.7E-05 27.0 1.4 30 159-188 11-46 (46)
240 2xkx_A Disks large homolog 4; 76.0 3 0.0001 41.2 5.3 47 49-95 61-118 (721)
241 2lk0_A RNA-binding protein 5; 75.7 2.6 8.8E-05 25.6 3.0 28 159-194 4-31 (32)
242 1w9e_A Syntenin 1; cell adhesi 75.2 3 0.0001 32.8 4.3 25 70-94 110-134 (166)
243 2em9_A Zinc finger protein 224 75.2 1.4 4.8E-05 26.5 1.8 30 159-188 11-46 (46)
244 2hga_A Conserved protein MTH13 75.1 5.6 0.00019 30.6 5.7 58 66-131 24-83 (125)
245 3pv2_A DEGQ; trypsin fold, PDZ 74.8 3 0.0001 38.9 4.8 60 67-132 282-343 (451)
246 2eps_A POZ-, at HOOK-, and zin 74.7 1.5 5.2E-05 27.7 2.0 32 159-190 11-49 (54)
247 2en8_A Zinc finger protein 224 74.1 2 6.7E-05 25.8 2.3 30 159-188 11-46 (46)
248 1x5w_A Zinc finger protein 64, 74.0 0.79 2.7E-05 30.4 0.4 32 159-190 8-45 (70)
249 1x6e_A Zinc finger protein 24; 73.9 0.66 2.3E-05 31.0 -0.0 32 159-190 13-50 (72)
250 3j21_g 50S ribosomal protein L 73.8 4.8 0.00016 27.3 4.3 34 157-200 11-44 (51)
251 2epw_A Zinc finger protein 268 73.7 1.5 5.3E-05 26.3 1.7 30 159-188 11-46 (46)
252 2eml_A Zinc finger protein 28 73.6 1.3 4.4E-05 26.7 1.3 30 159-188 11-46 (46)
253 2xkx_A Disks large homolog 4; 73.3 2.7 9.3E-05 41.4 4.2 70 55-128 318-389 (721)
254 2ep3_A Zinc finger protein 484 72.8 2.3 7.8E-05 25.5 2.4 30 159-188 11-46 (46)
255 2ytn_A Zinc finger protein 347 72.8 1.1 3.9E-05 27.0 0.9 30 159-188 11-46 (46)
256 2adr_A ADR1; transcription reg 72.6 0.56 1.9E-05 30.0 -0.6 31 160-190 2-38 (60)
257 2epz_A Zinc finger protein 28 72.4 1.3 4.3E-05 26.8 1.1 30 159-188 11-46 (46)
258 2el6_A Zinc finger protein 268 72.3 1.5 5.2E-05 26.5 1.4 30 159-188 11-46 (46)
259 1m2k_A Silent information regu 72.3 2.6 8.8E-05 36.4 3.4 34 157-191 118-151 (249)
260 3num_A Serine protease HTRA1; 72.2 0.77 2.6E-05 40.7 0.0 28 66-93 253-280 (332)
261 2eop_A Zinc finger protein 268 72.1 1.3 4.5E-05 26.6 1.1 30 159-188 11-46 (46)
262 2csh_A Zinc finger protein 297 72.0 1.9 6.5E-05 30.8 2.1 32 159-190 36-73 (110)
263 1pft_A TFIIB, PFTFIIBN; N-term 72.0 3.7 0.00013 26.7 3.4 15 159-173 23-37 (50)
264 2cot_A Zinc finger protein 435 71.5 1.1 3.9E-05 30.1 0.8 33 158-190 16-54 (77)
265 2ytq_A Zinc finger protein 268 71.3 1.4 4.8E-05 26.6 1.1 30 159-188 11-46 (46)
266 2eoe_A Zinc finger protein 347 71.3 1 3.6E-05 27.1 0.5 30 159-188 11-46 (46)
267 1x6h_A Transcriptional repress 70.8 2.1 7.2E-05 28.9 2.0 14 160-173 15-28 (86)
268 1ky9_A Protease DO, DEGP, HTRA 70.6 0.87 3E-05 42.5 0.0 26 67-92 383-408 (448)
269 2epx_A Zinc finger protein 28 70.6 1.4 4.9E-05 26.5 1.0 29 160-188 12-47 (47)
270 2ytj_A Zinc finger protein 484 70.6 1.4 4.6E-05 26.6 0.9 30 159-188 11-46 (46)
271 2ytk_A Zinc finger protein 347 70.5 0.93 3.2E-05 27.4 0.1 30 159-188 11-46 (46)
272 2drp_A Protein (tramtrack DNA- 70.5 1 3.5E-05 29.2 0.3 32 159-190 9-48 (66)
273 1bbo_A Human enhancer-binding 70.1 0.49 1.7E-05 29.9 -1.3 13 161-173 2-14 (57)
274 2yu8_A Zinc finger protein 347 70.0 1.3 4.6E-05 26.6 0.8 15 159-173 11-25 (46)
275 2enc_A Zinc finger protein 224 69.9 1.4 4.8E-05 26.5 0.9 30 159-188 11-46 (46)
276 1h7b_A Anaerobic ribonucleotid 69.9 1.4 4.9E-05 43.2 1.3 28 159-191 539-567 (605)
277 2lv9_A Histone-lysine N-methyl 69.7 4.4 0.00015 30.3 3.8 30 161-190 43-75 (98)
278 3gj3_B Nuclear pore complex pr 69.1 4.1 0.00014 25.1 2.9 28 158-193 5-32 (33)
279 2ytr_A Zinc finger protein 347 68.8 1.3 4.6E-05 26.6 0.6 29 160-188 12-46 (46)
280 2k16_A Transcription initiatio 68.4 3.7 0.00013 28.8 3.0 32 159-190 17-67 (75)
281 2vl6_A SSO MCM N-TER, minichro 68.3 4.8 0.00016 34.8 4.2 33 158-190 139-176 (268)
282 1vd4_A Transcription initiatio 67.8 0.81 2.8E-05 30.2 -0.7 32 159-190 13-47 (62)
283 2elz_A Zinc finger protein 224 67.6 1.3 4.4E-05 26.8 0.3 30 159-188 11-46 (46)
284 2en6_A Zinc finger protein 268 67.0 1.4 4.7E-05 26.6 0.4 30 159-188 11-46 (46)
285 2ct1_A Transcriptional repress 67.0 1.4 4.8E-05 29.7 0.4 32 159-190 14-53 (77)
286 2emy_A Zinc finger protein 268 67.0 1.2 4.3E-05 26.8 0.2 28 159-188 11-46 (46)
287 3p8b_A DNA-directed RNA polyme 67.0 5.1 0.00018 29.6 3.5 24 158-191 21-44 (81)
288 2lv2_A Insulinoma-associated p 66.9 1.5 5.1E-05 31.7 0.6 32 159-190 27-64 (85)
289 2yt9_A Zinc finger-containing 66.4 2.3 7.8E-05 29.4 1.5 32 159-190 34-73 (95)
290 2em0_A Zinc finger protein 224 66.4 1.5 5E-05 26.5 0.4 30 159-188 11-46 (46)
291 2emx_A Zinc finger protein 268 65.3 1.6 5.4E-05 26.0 0.4 15 159-173 9-23 (44)
292 2ytd_A Zinc finger protein 473 64.8 1.5 5E-05 26.5 0.2 28 159-188 11-46 (46)
293 2emm_A ZFP-95, zinc finger pro 64.8 1.5 5E-05 26.4 0.2 30 159-188 11-46 (46)
294 2d9g_A YY1-associated factor 2 64.6 6.2 0.00021 26.6 3.3 28 159-194 10-37 (53)
295 2ely_A Zinc finger protein 224 64.5 1.2 4E-05 27.0 -0.4 30 159-188 11-46 (46)
296 3dl0_A Adenylate kinase; phosp 63.5 4.9 0.00017 32.3 3.2 32 157-190 124-155 (216)
297 2yso_A ZFP-95, zinc finger pro 63.1 1.7 5.8E-05 26.2 0.2 30 159-188 11-46 (46)
298 4gzn_C ZFP-57, zinc finger pro 62.9 0.91 3.1E-05 30.7 -1.2 31 160-190 4-40 (60)
299 1gh9_A 8.3 kDa protein (gene M 62.8 1.8 6.2E-05 31.2 0.4 7 160-167 4-10 (71)
300 1ryq_A DNA-directed RNA polyme 62.3 4 0.00014 29.3 2.1 21 161-191 12-32 (69)
301 2emh_A Zinc finger protein 484 62.3 1.2 4.1E-05 26.9 -0.6 15 159-173 11-25 (46)
302 3a9j_C Mitogen-activated prote 61.8 6.7 0.00023 23.7 2.8 27 159-193 7-33 (34)
303 2em8_A Zinc finger protein 224 61.1 1.5 5E-05 26.6 -0.4 15 159-173 11-25 (46)
304 2k1p_A Zinc finger RAN-binding 60.9 3.9 0.00013 24.9 1.6 26 160-193 6-31 (33)
305 2eoq_A Zinc finger protein 224 60.9 1.4 4.7E-05 26.6 -0.5 30 159-188 11-46 (46)
306 2emp_A Zinc finger protein 347 60.8 1.4 4.9E-05 26.5 -0.4 15 159-173 11-25 (46)
307 2em2_A Zinc finger protein 28 60.7 2 6.7E-05 25.9 0.2 15 159-173 11-25 (46)
308 2lri_C Autoimmune regulator; Z 60.6 5.8 0.0002 27.7 2.7 32 160-191 24-59 (66)
309 1ma3_A SIR2-AF2, transcription 60.6 5.3 0.00018 34.4 3.0 31 157-190 120-155 (253)
310 1q1a_A HST2 protein; ternary c 60.3 3.1 0.00011 36.7 1.5 30 158-190 134-171 (289)
311 3gj5_B Nuclear pore complex pr 60.0 7.1 0.00024 24.2 2.7 28 158-193 5-32 (34)
312 3ir9_A Peptide chain release f 59.6 6.9 0.00023 32.0 3.4 33 159-191 77-112 (166)
313 2kvh_A Zinc finger and BTB dom 59.6 4.4 0.00015 21.1 1.6 13 160-172 3-15 (27)
314 2kvf_A Zinc finger and BTB dom 59.5 4.3 0.00015 21.2 1.5 13 160-172 3-15 (28)
315 1ky9_A Protease DO, DEGP, HTRA 59.5 4.6 0.00016 37.6 2.6 60 66-131 285-346 (448)
316 2lce_A B-cell lymphoma 6 prote 59.3 0.9 3.1E-05 30.4 -1.7 32 159-190 16-53 (74)
317 2eq4_A Zinc finger protein 224 59.1 1.6 5.4E-05 26.2 -0.5 28 159-188 11-46 (46)
318 2dmd_A Zinc finger protein 64, 59.1 2 6.8E-05 29.8 0.0 32 159-190 35-72 (96)
319 2ee8_A Protein ODD-skipped-rel 59.0 2.9 9.9E-05 29.5 0.9 32 159-190 44-81 (106)
320 2eov_A Zinc finger protein 484 58.9 1.2 4.1E-05 26.8 -1.0 14 160-173 12-25 (46)
321 3j20_Y 30S ribosomal protein S 58.6 4.4 0.00015 27.0 1.7 15 158-172 35-49 (50)
322 1yc5_A NAD-dependent deacetyla 58.1 4.5 0.00015 34.7 2.1 32 157-191 118-154 (246)
323 1nj3_A NPL4; NZF domain, rubre 57.3 11 0.00039 22.1 3.2 26 159-192 5-30 (31)
324 2ebq_A Nuclear pore complex pr 57.3 8.7 0.0003 25.5 2.9 31 158-196 9-39 (47)
325 3u31_A SIR2A, transcriptional 57.2 5.6 0.00019 35.4 2.7 16 158-173 152-167 (290)
326 2eoo_A ZFP-95, zinc finger pro 57.2 1.7 5.7E-05 26.3 -0.6 15 159-173 11-25 (46)
327 3tlx_A Adenylate kinase 2; str 57.2 8.1 0.00028 32.2 3.5 32 157-190 153-184 (243)
328 2m0d_A Zinc finger and BTB dom 56.9 5.1 0.00017 20.9 1.5 13 160-172 3-15 (30)
329 1q14_A HST2 protein; histone d 56.8 5.7 0.00019 36.4 2.7 30 158-190 142-179 (361)
330 2ebr_A Nuclear pore complex pr 56.3 7.4 0.00025 25.8 2.5 31 158-196 9-39 (47)
331 2m0f_A Zinc finger and BTB dom 56.0 5 0.00017 20.8 1.4 13 160-172 2-14 (29)
332 3fb4_A Adenylate kinase; psych 55.7 7.2 0.00025 31.2 2.9 32 157-190 124-155 (216)
333 2kvg_A Zinc finger and BTB dom 55.1 5.4 0.00018 21.0 1.4 13 160-172 3-15 (27)
334 1llm_C Chimera of ZIF23-GCN4; 55.1 1.5 5.2E-05 30.3 -1.2 31 160-190 3-39 (88)
335 1rik_A E6APC1 peptide; E6-bind 54.4 5.6 0.00019 20.8 1.4 13 160-172 2-14 (29)
336 1k32_A Tricorn protease; prote 54.3 9.6 0.00033 38.0 4.1 38 56-95 738-785 (1045)
337 3o70_A PHD finger protein 13; 53.7 4.4 0.00015 28.4 1.1 32 161-192 34-68 (68)
338 2emk_A Zinc finger protein 28 53.5 1.7 5.7E-05 26.3 -1.1 14 160-173 12-25 (46)
339 2avu_E Flagellar transcription 52.9 7.8 0.00027 32.9 2.7 32 158-191 132-163 (192)
340 3soe_A Membrane-associated gua 52.4 39 0.0013 25.7 6.5 71 49-128 14-91 (113)
341 2kmk_A Zinc finger protein GFI 51.9 1.7 5.7E-05 29.1 -1.4 32 159-190 28-65 (82)
342 1mm2_A MI2-beta; PHD, zinc fin 51.7 13 0.00046 25.1 3.3 31 161-191 22-56 (61)
343 1srk_A Zinc finger protein ZFP 51.1 6.6 0.00023 21.7 1.4 13 160-172 7-19 (35)
344 3lpe_B DNA-directed RNA polyme 51.0 7.1 0.00024 27.1 1.8 25 162-196 3-28 (59)
345 2eoy_A Zinc finger protein 473 51.0 14 0.00048 21.9 3.0 15 159-173 11-25 (46)
346 1xwh_A Autoimmune regulator; P 50.9 5.2 0.00018 27.6 1.1 37 160-196 20-60 (66)
347 2els_A Zinc finger protein 406 50.1 7.4 0.00025 21.7 1.5 14 159-172 8-21 (36)
348 2elx_A Zinc finger protein 406 50.0 7 0.00024 21.4 1.4 13 160-172 7-19 (35)
349 2lvu_A Zinc finger and BTB dom 55.4 3.4 0.00012 21.4 0.0 13 160-172 2-14 (26)
350 2ytm_A Zinc finger protein 28 49.6 1.3 4.4E-05 26.9 -2.1 14 160-173 12-25 (46)
351 1a1h_A QGSR zinc finger peptid 49.5 2 6.7E-05 29.3 -1.3 32 159-190 33-70 (90)
352 2dlq_A GLI-kruppel family memb 49.4 5 0.00017 28.8 0.8 33 158-190 64-102 (124)
353 2elt_A Zinc finger protein 406 49.4 7.2 0.00025 21.6 1.4 14 159-172 8-21 (36)
354 3f2b_A DNA-directed DNA polyme 49.3 8.4 0.00029 40.2 2.8 31 160-191 502-536 (1041)
355 2elv_A Zinc finger protein 406 49.3 7.3 0.00025 21.7 1.4 14 159-172 8-21 (36)
356 2fiy_A Protein FDHE homolog; F 49.3 11 0.00037 34.0 3.2 25 160-192 208-232 (309)
357 1f62_A Transcription factor WS 49.2 11 0.00038 24.3 2.5 31 160-190 15-49 (51)
358 1dxg_A Desulforedoxin; non-hem 49.0 9.6 0.00033 23.5 2.0 14 158-171 4-17 (36)
359 2elq_A Zinc finger protein 406 49.0 7.4 0.00025 21.7 1.4 14 159-172 8-21 (36)
360 2ent_A Krueppel-like factor 15 48.6 13 0.00044 22.0 2.6 30 159-188 11-48 (48)
361 2kwq_A Protein MCM10 homolog; 48.4 15 0.0005 27.7 3.3 32 161-199 49-80 (92)
362 2epu_A Zinc finger protein 32; 48.2 11 0.00038 22.2 2.2 15 159-173 11-25 (45)
363 2elm_A Zinc finger protein 406 48.1 9.6 0.00033 21.6 1.8 14 159-172 8-21 (37)
364 2j9u_B VPS36, vacuolar protein 47.8 16 0.00054 26.7 3.3 36 158-193 15-51 (76)
365 2ytt_A Zinc finger protein 473 47.4 1.4 4.8E-05 26.7 -2.2 14 160-173 12-25 (46)
366 3glr_A NAD-dependent deacetyla 47.3 6.8 0.00023 34.8 1.5 30 158-190 137-171 (285)
367 3suz_A Amyloid beta A4 precurs 47.2 4 0.00014 37.2 0.0 22 70-91 318-339 (388)
368 1fp0_A KAP-1 corepressor; PHD 46.8 22 0.00076 26.4 4.1 32 160-191 37-72 (88)
369 2elp_A Zinc finger protein 406 46.7 8.4 0.00029 21.6 1.4 14 159-172 8-21 (37)
370 1znf_A 31ST zinc finger from X 46.1 4.7 0.00016 20.8 0.2 11 161-171 2-12 (27)
371 1ard_A Yeast transcription fac 45.7 4.7 0.00016 21.0 0.1 13 160-172 2-14 (29)
372 3j21_i 50S ribosomal protein L 45.4 11 0.00039 27.9 2.2 17 156-172 49-65 (83)
373 3iz5_m 60S ribosomal protein L 45.0 13 0.00043 28.1 2.5 15 158-172 52-66 (92)
374 2wbt_A B-129; zinc finger; 2.7 45.0 11 0.00038 27.5 2.2 31 158-190 72-108 (129)
375 2dmi_A Teashirt homolog 3; zin 44.5 12 0.00042 26.6 2.3 13 160-172 19-31 (115)
376 1wgm_A Ubiquitin conjugation f 44.5 12 0.00041 27.6 2.3 16 175-190 15-30 (98)
377 3gj8_B Nuclear pore complex pr 44.1 15 0.00052 27.0 2.8 28 158-193 63-90 (92)
378 3u5n_A E3 ubiquitin-protein li 43.6 20 0.00068 29.7 3.8 32 160-191 19-54 (207)
379 1we9_A PHD finger family prote 43.6 3.2 0.00011 28.2 -0.9 12 180-191 47-58 (64)
380 2elo_A Zinc finger protein 406 43.0 7.1 0.00024 21.9 0.7 14 159-172 8-21 (37)
381 2m0e_A Zinc finger and BTB dom 42.8 4.9 0.00017 20.7 -0.1 13 160-172 2-14 (29)
382 2lvt_A Zinc finger and BTB dom 48.8 5.2 0.00018 21.1 0.0 13 160-172 2-14 (29)
383 3ttc_A HYPF, transcriptional r 42.3 3.9 0.00013 40.6 -1.0 34 157-192 63-99 (657)
384 2eon_A ZFP-95, zinc finger pro 42.1 11 0.00037 22.5 1.5 15 159-173 11-25 (46)
385 2c2l_A CHIP, carboxy terminus 42.1 5.5 0.00019 33.4 0.1 30 162-193 222-254 (281)
386 1qyp_A RNA polymerase II; tran 42.1 11 0.00039 25.1 1.7 15 158-172 41-55 (57)
387 2lvr_A Zinc finger and BTB dom 48.0 5.4 0.00019 20.9 0.0 13 160-172 3-15 (30)
388 3o36_A Transcription intermedi 41.8 22 0.00077 28.7 3.8 33 160-192 16-52 (184)
389 1klr_A Zinc finger Y-chromosom 41.8 5.3 0.00018 20.8 -0.1 13 160-172 2-14 (30)
390 3iuf_A Zinc finger protein UBI 40.6 11 0.00039 23.0 1.4 14 159-172 6-19 (48)
391 4g9i_A Hydrogenase maturation 40.4 4.2 0.00014 40.9 -1.0 31 158-190 153-186 (772)
392 2elr_A Zinc finger protein 406 40.1 6.5 0.00022 21.8 0.1 14 159-172 8-21 (36)
393 2kr4_A Ubiquitin conjugation f 39.8 16 0.00056 25.9 2.4 16 175-190 7-22 (85)
394 2e6r_A Jumonji/ARID domain-con 39.7 19 0.00064 26.5 2.7 31 160-190 31-65 (92)
395 2i13_A AART; DNA binding, zinc 39.6 7.3 0.00025 30.5 0.4 15 159-173 48-62 (190)
396 1njq_A Superman protein; zinc- 39.3 13 0.00043 21.2 1.4 14 160-173 6-19 (39)
397 3vth_A Hydrogenase maturation 39.1 4.9 0.00017 40.5 -0.8 27 162-190 163-191 (761)
398 1p7a_A BF3, BKLF, kruppel-like 39.0 6.8 0.00023 21.9 0.1 14 159-172 10-23 (37)
399 3sr0_A Adenylate kinase; phosp 38.8 22 0.00074 29.4 3.3 27 156-191 120-146 (206)
400 2r6f_A Excinuclease ABC subuni 38.6 15 0.00052 38.0 2.7 32 159-190 266-299 (972)
401 1paa_A Yeast transcription fac 38.0 6.8 0.00023 20.6 0.0 13 160-172 2-14 (30)
402 2e6s_A E3 ubiquitin-protein li 38.0 37 0.0012 24.2 4.0 30 161-190 42-76 (77)
403 3izc_m 60S ribosomal protein R 37.6 21 0.00072 26.9 2.7 15 158-172 52-66 (92)
404 4esj_A Type-2 restriction enzy 37.5 5.9 0.0002 35.0 -0.4 37 161-200 35-71 (257)
405 3cc2_Z 50S ribosomal protein L 37.3 13 0.00044 29.2 1.5 10 159-168 59-68 (116)
406 2epv_A Zinc finger protein 268 37.3 14 0.00048 21.7 1.4 15 159-173 11-25 (44)
407 2ctd_A Zinc finger protein 512 36.3 11 0.00038 27.0 1.0 31 158-191 32-71 (96)
408 2epc_A Zinc finger protein 32; 36.2 15 0.00052 21.0 1.4 14 159-172 10-23 (42)
409 1yui_A GAGA-factor; complex (D 36.1 14 0.00049 22.8 1.4 14 159-172 23-36 (54)
410 1vdd_A Recombination protein R 36.0 7.9 0.00027 33.7 0.1 28 158-195 52-79 (228)
411 1wii_A Hypothetical UPF0222 pr 35.7 22 0.00074 26.3 2.5 11 159-169 22-32 (85)
412 1wil_A KIAA1045 protein; ring 35.6 16 0.00053 27.5 1.6 32 158-189 27-74 (89)
413 2k1k_A Ephrin type-A receptor 35.5 29 0.00098 21.8 2.7 20 213-232 14-33 (38)
414 2ept_A Zinc finger protein 32; 35.1 18 0.00062 20.7 1.6 15 159-173 9-23 (41)
415 2eoz_A Zinc finger protein 473 35.0 16 0.00055 21.6 1.4 15 159-173 11-25 (46)
416 2en2_A B-cell lymphoma 6 prote 34.9 16 0.00055 21.0 1.4 14 159-172 10-23 (42)
417 2eof_A Zinc finger protein 268 34.6 16 0.00056 21.1 1.4 15 159-173 11-25 (44)
418 2eox_A Zinc finger protein 473 34.5 17 0.00057 21.2 1.4 15 159-173 11-25 (44)
419 2eow_A Zinc finger protein 347 34.5 17 0.00057 21.4 1.4 15 159-173 11-25 (46)
420 2ytp_A Zinc finger protein 484 34.2 17 0.00057 21.5 1.4 15 159-173 11-25 (46)
421 2enh_A Zinc finger protein 28 34.1 17 0.00059 21.4 1.5 14 160-173 12-25 (46)
422 2jrp_A Putative cytoplasmic pr 34.0 14 0.00049 27.2 1.2 26 160-194 18-43 (81)
423 2emb_A Zinc finger protein 473 33.7 17 0.00059 21.2 1.4 15 159-173 11-25 (44)
424 2yts_A Zinc finger protein 484 33.6 17 0.0006 21.3 1.4 15 159-173 11-25 (46)
425 2yu5_A Zinc finger protein 473 33.6 18 0.0006 21.1 1.4 15 159-173 11-25 (44)
426 2emj_A Zinc finger protein 28 33.6 17 0.0006 21.4 1.4 15 159-173 11-25 (46)
427 2emi_A Zinc finger protein 484 33.4 18 0.0006 21.3 1.4 15 159-173 11-25 (46)
428 2em3_A Zinc finger protein 28 33.3 18 0.00061 21.3 1.4 15 159-173 11-25 (46)
429 3jyw_9 60S ribosomal protein L 33.0 9.5 0.00033 27.5 0.1 29 158-190 24-52 (72)
430 3gj7_B Nuclear pore complex pr 32.9 29 0.001 26.0 2.9 28 158-193 70-97 (98)
431 4a17_Y RPL37A, 60S ribosomal p 32.9 18 0.00063 27.8 1.7 11 159-169 35-45 (103)
432 2yto_A Zinc finger protein 484 32.8 18 0.00063 21.3 1.4 15 159-173 11-25 (46)
433 2em4_A Zinc finger protein 28 32.7 18 0.00063 21.3 1.4 15 159-173 11-25 (46)
434 2yrj_A Zinc finger protein 473 32.7 18 0.00063 21.2 1.4 15 159-173 11-25 (46)
435 1s5p_A NAD-dependent deacetyla 32.6 28 0.00096 29.5 3.0 16 158-173 111-126 (235)
436 2ytf_A Zinc finger protein 268 32.4 19 0.00064 21.1 1.4 15 159-173 11-25 (46)
437 1ffk_W Ribosomal protein L37AE 32.2 18 0.00061 26.1 1.5 15 158-172 43-57 (73)
438 4fln_A Protease DO-like 2, chl 32.2 23 0.00079 34.1 2.7 29 66-95 276-304 (539)
439 2con_A RUH-035 protein, NIN on 32.0 37 0.0013 24.8 3.2 25 160-191 15-39 (79)
440 2el5_A Zinc finger protein 268 31.9 20 0.00067 20.6 1.4 15 159-173 9-23 (42)
441 2eor_A Zinc finger protein 224 31.9 19 0.00065 21.1 1.4 15 159-173 11-25 (46)
442 1tfi_A Transcriptional elongat 31.9 31 0.0011 22.8 2.5 17 182-198 9-25 (50)
443 3asl_A E3 ubiquitin-protein li 31.5 43 0.0015 23.3 3.4 31 160-190 33-68 (70)
444 3cf4_G Acetyl-COA decarboxylas 31.3 8.2 0.00028 30.9 -0.5 74 22-100 40-122 (170)
445 2en3_A ZFP-95, zinc finger pro 31.2 20 0.00069 21.0 1.4 15 159-173 11-25 (46)
446 2l5u_A Chromodomain-helicase-D 31.1 25 0.00084 23.8 2.0 31 160-190 23-57 (61)
447 1rim_A E6APC2 peptide; E6-bind 30.9 10 0.00034 21.1 -0.1 13 160-172 2-14 (33)
448 2k4x_A 30S ribosomal protein S 30.8 19 0.00065 24.3 1.3 31 141-172 18-48 (55)
449 2yql_A PHD finger protein 21A; 30.3 20 0.00069 23.6 1.4 30 160-189 21-54 (56)
450 2ro1_A Transcription intermedi 30.1 35 0.0012 28.0 3.2 32 160-191 14-49 (189)
451 2ebv_A Nuclear pore complex pr 30.1 21 0.00071 24.6 1.4 28 158-193 29-56 (57)
452 1iym_A EL5; ring-H2 finger, ub 29.9 34 0.0012 21.4 2.4 29 161-191 22-52 (55)
453 2eod_A TNF receptor-associated 29.8 17 0.00058 23.4 1.0 28 159-190 9-45 (66)
454 2eoj_A Zinc finger protein 268 29.4 16 0.00054 21.3 0.7 15 159-173 11-25 (44)
455 3f9v_A Minichromosome maintena 29.2 38 0.0013 32.5 3.7 34 158-191 133-171 (595)
456 4iao_A NAD-dependent histone d 29.1 17 0.00057 35.0 1.1 30 158-189 297-330 (492)
457 2ej4_A Zinc finger protein ZIC 28.8 16 0.00054 25.0 0.7 14 160-173 25-38 (95)
458 2lt7_A Transcriptional regulat 28.7 21 0.00072 27.2 1.5 14 160-173 78-91 (133)
459 1n0z_A ZNF265; zinc finger, RN 28.7 28 0.00097 22.5 1.9 28 158-193 12-41 (45)
460 2dlk_A Novel protein; ZF-C2H2 28.5 9.6 0.00033 25.1 -0.5 32 159-190 37-76 (79)
461 3pih_A Uvrabc system protein A 28.2 19 0.00064 37.0 1.3 32 159-190 248-281 (916)
462 2kfq_A FP1; protein, de novo p 28.1 6.8 0.00023 21.6 -1.2 13 160-172 2-14 (32)
463 3riy_A NAD-dependent deacetyla 28.1 23 0.0008 30.8 1.8 16 157-172 131-146 (273)
464 2kre_A Ubiquitin conjugation f 28.0 25 0.00085 25.9 1.7 17 175-191 22-38 (100)
465 3uk3_C Zinc finger protein 217 27.9 24 0.00083 21.5 1.4 14 159-172 31-44 (57)
466 1j8f_A SIRT2, sirtuin 2, isofo 27.8 17 0.00057 32.7 0.8 30 158-190 157-193 (323)
467 3axs_A Probable N(2),N(2)-dime 27.8 28 0.00095 32.0 2.3 30 158-190 242-271 (392)
468 2egp_A Tripartite motif-contai 27.7 62 0.0021 21.6 3.7 11 182-192 53-63 (79)
469 1ubd_C Protein (YY1 zinc finge 27.5 22 0.00075 25.4 1.3 14 160-173 62-77 (124)
470 2odx_A Cytochrome C oxidase po 27.4 27 0.00091 25.5 1.7 14 159-172 55-68 (80)
471 2eos_A B-cell lymphoma 6 prote 27.2 16 0.00054 21.1 0.4 15 159-173 10-24 (42)
472 2wbs_A Krueppel-like factor 4; 27.1 27 0.00092 23.2 1.6 15 159-173 34-50 (89)
473 3mkr_B Coatomer subunit alpha; 26.9 26 0.00089 31.8 1.9 25 160-190 278-302 (320)
474 3ask_A E3 ubiquitin-protein li 26.9 36 0.0012 29.4 2.7 16 175-190 207-224 (226)
475 2hjh_A NAD-dependent histone d 26.9 18 0.0006 32.9 0.8 31 158-190 159-193 (354)
476 2f9y_B Acetyl-coenzyme A carbo 26.7 11 0.00039 33.5 -0.5 28 160-191 23-52 (304)
477 2ecj_A Tripartite motif-contai 26.6 27 0.00094 21.9 1.5 13 160-172 15-27 (58)
478 1l8d_A DNA double-strand break 26.6 17 0.00058 27.0 0.5 9 184-192 49-57 (112)
479 2ab3_A ZNF29; zinc finger prot 26.5 30 0.001 17.5 1.5 13 160-172 2-16 (29)
480 1v54_F VI, cytochrome C oxidas 26.2 25 0.00085 26.6 1.4 13 160-172 79-91 (98)
481 2eq3_A Zinc finger protein 347 26.1 18 0.00062 21.2 0.5 15 159-173 11-25 (46)
482 1wee_A PHD finger family prote 26.1 28 0.00097 24.1 1.6 14 177-190 52-65 (72)
483 2ytb_A Zinc finger protein 32; 26.1 15 0.00051 21.0 0.1 15 159-173 10-24 (42)
484 2d9h_A Zinc finger protein 692 26.1 29 0.001 22.8 1.6 32 159-190 6-46 (78)
485 3o7a_A PHD finger protein 13 v 25.8 15 0.00052 24.0 0.1 30 161-190 19-51 (52)
486 1fv5_A First zinc finger of U- 25.7 21 0.00073 21.5 0.8 14 159-172 7-20 (36)
487 2puy_A PHD finger protein 21A; 25.7 22 0.00075 23.8 0.9 31 160-190 17-51 (60)
488 1wff_A Riken cDNA 2810002D23 p 25.5 33 0.0011 25.4 1.9 25 159-187 39-63 (85)
489 1f2i_G Fusion of N-terminal 17 25.3 28 0.00095 22.5 1.4 14 159-172 48-61 (73)
490 2yte_A Zinc finger protein 473 25.3 16 0.00055 20.9 0.1 14 160-173 10-23 (42)
491 3shb_A E3 ubiquitin-protein li 25.3 70 0.0024 22.8 3.6 31 160-190 41-76 (77)
492 3vdp_A Recombination protein R 25.2 16 0.00055 31.4 0.2 29 158-196 66-94 (212)
493 3mv2_A Coatomer subunit alpha; 25.0 38 0.0013 30.8 2.6 26 159-190 286-311 (325)
494 2ri7_A Nucleosome-remodeling f 25.0 8.5 0.00029 30.9 -1.5 13 179-191 47-59 (174)
495 2emg_A Zinc finger protein 484 24.9 16 0.00056 21.5 0.1 15 159-173 11-25 (46)
496 1wfl_A Zinc finger protein 216 24.9 57 0.0019 23.6 3.0 25 158-186 37-61 (74)
497 1zvf_A 3-hydroxyanthranilate 3 24.6 6.2 0.00021 33.1 -2.5 41 150-190 114-169 (176)
498 4bbq_A Lysine-specific demethy 24.5 18 0.0006 27.1 0.3 31 160-190 75-113 (117)
499 1t1h_A Gspef-atpub14, armadill 24.5 30 0.001 23.4 1.5 15 177-191 3-17 (78)
500 2enf_A Zinc finger protein 347 24.5 17 0.00059 21.4 0.2 15 159-173 11-25 (46)
No 1
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=99.95 E-value=1.4e-29 Score=230.52 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=102.7
Q ss_pred ccccccccceeeecccccccCCcccccCchhHHHHHHHhCCeeEEE--------EeecCccceeeeeecCCcEEEEEeec
Q 038893 5 QGLSLQESKRRVSDHFLAVSKTKNATRSLDNNKITARTAGASKTIE--------VEVDKPLGLTLGQKPGGGVVITAVEG 76 (235)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lA~~lg~~~~~~--------v~~~kplGl~~g~~~~~~vyIa~~is 76 (235)
+..+|++|++|||+ |||++++|||+++++||++|||++++| ++.++|+|+ +|++++|+|||++|||
T Consensus 185 ~~~~L~~A~ivVsg-----GRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGq-TGk~V~P~lYiA~GIS 258 (307)
T 1efp_A 185 DRPELTSARRVVSG-----GRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQ-TGKVVAPELYVAVGIS 258 (307)
T ss_dssp CSCCTTTCSEEEEE-----CGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSS-SSBCCCCSEEEEESCC
T ss_pred CCCCcCCCCEEEEc-----CCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChhhEecc-CCcccCCceEEEEecc
Confidence 35789999999999 999999999999999999999999999 778899999 9999999999999999
Q ss_pred chHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCceeeeecccc
Q 038893 77 GGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGADVDVKRL 138 (235)
Q Consensus 77 G~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~~~d~~~~ 138 (235)
|++||++||+.+ ++|+|||+||+||||+++|||+++|++++
T Consensus 259 GAiQHlaGm~~s---------------------~~IVAIN~D~~ApIF~~ADygiVgDl~~v 299 (307)
T 1efp_A 259 GAIQHLAGMKDS---------------------KVIVAINKDEEAPIFQIADYGLVGDLFSV 299 (307)
T ss_dssp CCHHHHTTTTTC---------------------SEEEEEESCTTCGGGGTCSEEEESCHHHH
T ss_pred CcHHHHhhhccC---------------------CEEEEEeCCCCCCcccccCeEEeeeHHHH
Confidence 999999999999 47899999999999999999999999986
No 2
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=99.95 E-value=1.8e-29 Score=230.41 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=102.8
Q ss_pred ccccccccceeeecccccccCCcccccCchhHHHHHHHhCCeeEEE--------EeecCccceeeeeecCCcEEEEEeec
Q 038893 5 QGLSLQESKRRVSDHFLAVSKTKNATRSLDNNKITARTAGASKTIE--------VEVDKPLGLTLGQKPGGGVVITAVEG 76 (235)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lA~~lg~~~~~~--------v~~~kplGl~~g~~~~~~vyIa~~is 76 (235)
+..+|++|++|||+ |||++++|||+++++||++|||++++| ++.++|+|+ +|++++|+|||++|||
T Consensus 190 ~~~~L~~A~ivVsg-----GrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGq-TGk~V~P~lYiA~GIS 263 (315)
T 1efv_A 190 DRPELTGAKVVVSG-----GRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQ-TGKIVAPELYIAVGIS 263 (315)
T ss_dssp CSCCGGGCSEEEEE-----CGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBST-TSBCCCCSEEEEESCC
T ss_pred CCcCcCCCCEEEEc-----CCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHHheecc-CCcccCcceEEEeccc
Confidence 35789999999999 999999999999999999999999999 778899999 9999999999999999
Q ss_pred chHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCceeeeecccc
Q 038893 77 GGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGADVDVKRL 138 (235)
Q Consensus 77 G~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~~~d~~~~ 138 (235)
|++||++||+.+ ++|+|||+||+||||+++|||+++|++++
T Consensus 264 GAiQHlaGm~~s---------------------~~IVAIN~D~~ApIf~~ADygiVgDl~~v 304 (315)
T 1efv_A 264 GAIQHLAGMKDS---------------------KTIVAINKDPEAPIFQVADYGIVADLFKV 304 (315)
T ss_dssp CCHHHHTTTTTC---------------------SEEEEEESCTTCGGGGTCSEEEESCHHHH
T ss_pred CcHHHHhhcccC---------------------CEEEEEeCCCCCCcchhcCeEEeeeHHHH
Confidence 999999999999 47899999999999999999999999997
No 3
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=99.95 E-value=3e-29 Score=229.48 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=102.4
Q ss_pred ccccccccceeeecccccccCCcccccCchhHHHHHHHhCCeeEEE--------EeecCccceeeeeecCC-cEEEEEee
Q 038893 5 QGLSLQESKRRVSDHFLAVSKTKNATRSLDNNKITARTAGASKTIE--------VEVDKPLGLTLGQKPGG-GVVITAVE 75 (235)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lA~~lg~~~~~~--------v~~~kplGl~~g~~~~~-~vyIa~~i 75 (235)
+..+|++|++|||+ |||++++|||+++++||++|||++++| ++.++|+|+ +|++++| +|||++||
T Consensus 195 ~~~~l~~A~ivVsg-----GRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGq-TGk~V~P~~lYiA~GI 268 (320)
T 1o97_D 195 NDIDITTVDFIMSI-----GRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSRQVGQ-SGKVVGSCKLYVAMGI 268 (320)
T ss_dssp -CCCCSCSSEEEEE-----CGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBST-TSBCCTTCSEEEEESC
T ss_pred CCcCcCCCCEEEEc-----CCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChhhEeec-CceEecccceEEEEec
Confidence 35799999999999 999999999999999999999999999 788899999 9999999 99999999
Q ss_pred cchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCceeeeecccc
Q 038893 76 GGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGADVDVKRL 138 (235)
Q Consensus 76 sG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~~~d~~~~ 138 (235)
||++||++||+.+ ++|+|||+||+||||+++|||+++|++++
T Consensus 269 SGAiQHlaGm~~s---------------------~~IVAIN~D~~ApIF~~ADygiVgDl~~v 310 (320)
T 1o97_D 269 SGSIQHMAGMKHV---------------------PTIIAVNTDPGASIFTIAKYGIVADIFDI 310 (320)
T ss_dssp CCCHHHHHHHTTC---------------------SEEEEECSCTTCGGGGTCSEEECSCHHHH
T ss_pred cCcHHHHhhcccC---------------------CEEEEEeCCCCCCcccccCeEEeeeHHHH
Confidence 9999999999999 47899999999999999999999999997
No 4
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=99.64 E-value=6e-17 Score=113.36 Aligned_cols=43 Identities=35% Similarity=0.814 Sum_probs=39.6
Q ss_pred cceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 158 RATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
|.+|+|++||||||++ |+|+++|++|+||+|+++|++|+.+++
T Consensus 1 m~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K~~F~~~~~ 54 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVEE 54 (54)
T ss_dssp CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGGGEEECCC
T ss_pred CCceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCcHHHceEccC
Confidence 4689999999999986 899999999999999999999998763
No 5
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=99.61 E-value=3e-16 Score=110.11 Aligned_cols=43 Identities=28% Similarity=0.767 Sum_probs=39.1
Q ss_pred cceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 158 RATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
|..|+|++||||||++ |+|+++|++|+||+|+++|++|+.++.
T Consensus 1 m~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~K~~F~~~~~ 54 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFEMIEI 54 (55)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCCGGGEEECC-
T ss_pred CCcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHceeccc
Confidence 4689999999999986 799999999999999999999998753
No 6
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=99.61 E-value=3.4e-16 Score=108.68 Aligned_cols=41 Identities=37% Similarity=0.845 Sum_probs=37.6
Q ss_pred cceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeec
Q 038893 158 RATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARY 198 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~ 198 (235)
|..|+|++||||||++ |+|+++|++|+||+|+++|++|+.+
T Consensus 1 m~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~~F~~~ 52 (52)
T 1e8j_A 1 MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52 (52)
T ss_dssp CCCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCCTTSCEEC
T ss_pred CCcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCcHHHcEEC
Confidence 4579999999999976 7999999999999999999999864
No 7
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=99.60 E-value=4.4e-16 Score=114.21 Aligned_cols=53 Identities=30% Similarity=0.716 Sum_probs=45.8
Q ss_pred ccceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeeccCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYDVNTGKPIGSGL 210 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~~~~~~~~g~~~ 210 (235)
.+..|+|++||||||++ |+|+++|++|+||+|+++|++|+.+.. .++|+--|+
T Consensus 4 ~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~~~~-~~sgf~en~ 67 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKK-VIAGFAENQ 67 (70)
T ss_dssp CSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEECCC-BCCCSCCCS
T ss_pred CCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceEccc-cCCChhhhc
Confidence 46789999999999986 799999999999999999999999864 567665544
No 8
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=99.59 E-value=3e-16 Score=106.49 Aligned_cols=40 Identities=40% Similarity=0.911 Sum_probs=37.3
Q ss_pred cceEEcCCCceEEeCC----CCCCCCCCCCCCCCCCCCccCeee
Q 038893 158 RATHICLDCGYIYFLQ----KPFDELPDTYVCPQCQAPKKRFAR 197 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~----tpfe~lped~~CP~C~a~k~~F~~ 197 (235)
|..|+|++||||||++ |+|+++|++|+||+|+++|++|+.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 45 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGGGEEE
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcHHHcEe
Confidence 5689999999999965 899999999999999999999985
No 9
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=99.58 E-value=1e-15 Score=115.11 Aligned_cols=44 Identities=32% Similarity=0.792 Sum_probs=40.6
Q ss_pred ccceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 157 ARATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
++..|+|++||||||++ |+|+++|++|+||+|+++|++|+.++.
T Consensus 24 em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F~~i~~ 78 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV 78 (81)
T ss_dssp CCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGGEEEECC
T ss_pred CcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHcEEccc
Confidence 36789999999999985 799999999999999999999999865
No 10
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=99.58 E-value=8e-16 Score=106.79 Aligned_cols=40 Identities=48% Similarity=1.036 Sum_probs=37.5
Q ss_pred eEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeecc
Q 038893 160 THICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYD 199 (235)
Q Consensus 160 ~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~ 199 (235)
.|+|++||||||++ |+|+++|++|+||+|+++|++|+.++
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~~F~~~~ 52 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 52 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGGGEEEEC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCCHHHcEECC
Confidence 69999999999986 89999999999999999999999763
No 11
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=99.55 E-value=2.1e-15 Score=114.76 Aligned_cols=45 Identities=38% Similarity=0.888 Sum_probs=40.9
Q ss_pred cccceEEcCCCceEEeCC-----------CCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 156 KARATHICLDCGYIYFLQ-----------KPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 156 ~~~~~y~C~~CGyvyd~~-----------tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
..+..|+|++||||||++ |+|+++|++|+||+|+++|++|+.+++
T Consensus 31 ~~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F~~i~~ 86 (87)
T 1s24_A 31 KAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDYVLYEE 86 (87)
T ss_dssp -CCCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGGGEEECSC
T ss_pred cCCceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHHHhhhccc
Confidence 347899999999999986 899999999999999999999998764
No 12
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=98.73 E-value=3.1e-09 Score=90.33 Aligned_cols=37 Identities=30% Similarity=0.769 Sum_probs=32.4
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
+..|+|++|||+|++. ++|+ +||+|++++++|+....
T Consensus 153 ~~~~~C~~CG~~~~g~----~~p~--~CP~C~~~k~~f~~~~~ 189 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT----GAPE--LCPACAHPKAHFELLGI 189 (191)
T ss_dssp EEEEEETTTCCEEEEE----ECCS--BCTTTCCBGGGEEECCC
T ss_pred CceEEECCCCCEeeCC----CCCC--CCCCCcCCHHHHHhHhh
Confidence 4589999999999983 6787 99999999999998654
No 13
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=98.73 E-value=5.2e-09 Score=87.82 Aligned_cols=33 Identities=42% Similarity=0.939 Sum_probs=30.2
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeec
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARY 198 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~ 198 (235)
..|+|++|||||++ ++|+ +||+|++|++.|+.+
T Consensus 137 ~~~~C~~CG~i~~~-----~~p~--~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 137 KVYICPICGYTAVD-----EAPE--YCPVCGAPKEKFVVF 169 (170)
T ss_dssp CEEECTTTCCEEES-----CCCS--BCTTTCCBGGGCEEE
T ss_pred CeeEeCCCCCeeCC-----CCCC--CCCCCCCCHHHceec
Confidence 57999999999996 6788 999999999999986
No 14
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=98.73 E-value=5.5e-09 Score=89.77 Aligned_cols=34 Identities=41% Similarity=0.726 Sum_probs=29.6
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeec
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARY 198 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~ 198 (235)
+..|+|++|||+|++ +.| |+||+|++++++|+.+
T Consensus 169 ~~~~~C~~CG~i~~g-----~~p--~~CP~C~~~k~~F~~~ 202 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG-----EDF--EKCPICFRPKDTFTAY 202 (202)
T ss_dssp CCEEECSSSCCEEES-----SCC--SBCTTTCCBGGGCEEC
T ss_pred CcEEEECCCCCEEcC-----cCC--CCCCCCCCChHHheeC
Confidence 568999999999998 344 7999999999999864
No 15
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=96.77 E-value=0.0055 Score=43.91 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=48.3
Q ss_pred EEEeec--Cccceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 49 IEVEVD--KPLGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
.++++. .++|+.+.... ..+++|..+.+++.|+++|++.||+|..+- |..+-.. ........++..++...+
T Consensus 4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~~~~v~l 79 (87)
T 2pa1_A 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAIN---GESAEGM-LHAEAQSKIRQSPSPLRL 79 (87)
T ss_dssp EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEET---TEESTTC-CHHHHHHHHHTCCSSEEE
T ss_pred EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCeEEE
Confidence 344443 57888776543 468999999999999999999999886543 3222210 123344445554455555
Q ss_pred EecC
Q 038893 125 VVNR 128 (235)
Q Consensus 125 ~~~~ 128 (235)
.+.+
T Consensus 80 ~v~R 83 (87)
T 2pa1_A 80 QLDR 83 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 16
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=96.72 E-value=0.0012 Score=51.63 Aligned_cols=33 Identities=21% Similarity=0.570 Sum_probs=25.9
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCC-CCCCCCCCccCee
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTY-VCPQCQAPKKRFA 196 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~-~CP~C~a~k~~F~ 196 (235)
...|+|..|||+|... + ... .||.|+++..++.
T Consensus 71 p~~~~C~~CG~~~e~~----~--~~~~~CP~Cgs~~~~i~ 104 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN----A--LDYGVCEKCHSKNVIIT 104 (119)
T ss_dssp CCEEECSSSSCEECSC----C--STTCCCSSSSSCCCEEE
T ss_pred cceEEcCCCCCEEeCC----C--CCCCcCccccCCCcEEe
Confidence 4589999999999873 2 235 7999999877665
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=96.65 E-value=0.00075 Score=54.60 Aligned_cols=37 Identities=24% Similarity=0.632 Sum_probs=25.8
Q ss_pred cceEEcCCCceEEeCCC-----------CCCCCC----CCCCCCCCCCCccC
Q 038893 158 RATHICLDCGYIYFLQK-----------PFDELP----DTYVCPQCQAPKKR 194 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t-----------pfe~lp----ed~~CP~C~a~k~~ 194 (235)
...|+|+.|||+|.... +++-.| ....||.|+++.-+
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 45899999999998753 222222 13589999987644
No 18
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=96.60 E-value=0.0075 Score=42.80 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=35.0
Q ss_pred EEEeec--Cccceeeee--ecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVD--KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~--~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
++|++. .++|+.+.. .....++|..+.+|+.|+++|++.||+|..+
T Consensus 3 ~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~v 52 (85)
T 1rgw_A 3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAI 52 (85)
T ss_dssp EEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEE
T ss_pred EEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 345554 557776543 2345799999999999999999999988655
No 19
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=96.51 E-value=0.0094 Score=43.02 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=45.1
Q ss_pred cCccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 54 DKPLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 54 ~kplGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
+.++|+.+... ...+++|..+.+++.|+++|++.||+|..+- |..+-+.... .....++...+...+.+.+
T Consensus 12 ~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in---g~~v~~~~~~-~~~~~l~~~g~~v~l~v~R 84 (91)
T 2pkt_A 12 PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAID---GENTSNMTHL-EAQNRIKGCTDNLTLTVAR 84 (91)
T ss_dssp SSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEET---TEECTTCCHH-HHHHHHHTCSSEEEEEEEE
T ss_pred CCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEEC---CEECCCCCHH-HHHHHHHcCCCeEEEEEEE
Confidence 36788876543 2468999999999999999999999886653 3333222200 3344555533344455554
No 20
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=96.41 E-value=0.0081 Score=45.17 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=33.6
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++|+.+....+.+++|..+.+|+.|+++| ++.||+|..+
T Consensus 24 ~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~I 64 (97)
T 2ejy_A 24 EPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEI 64 (97)
T ss_dssp SCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEE
T ss_pred CCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence 467887665455789999999999999999 9999988665
No 21
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=96.32 E-value=0.0078 Score=43.81 Aligned_cols=46 Identities=39% Similarity=0.576 Sum_probs=35.8
Q ss_pred EEEeecC-----ccceeeeee-cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVDK-----PLGLTLGQK-PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k-----plGl~~g~~-~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|++.| ++|+.+... ..++++|..+.+|+.|+++| ++.||+|..+
T Consensus 5 ~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 57 (95)
T 2vwr_A 5 LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57 (95)
T ss_dssp EEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence 4566654 378766432 35689999999999999999 9999988654
No 22
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=96.22 E-value=0.016 Score=42.21 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=47.8
Q ss_pred EEEeec---Cccceeeeeec------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcC
Q 038893 49 IEVEVD---KPLGLTLGQKP------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK 118 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~ 118 (235)
.+|++. .++|+.+.... ..+++|..+.+|+.|+++| ++.||+|..+- |..+-. .........++..
T Consensus 5 ~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~in---g~~v~~-~~~~~~~~~l~~~ 80 (97)
T 2jil_A 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD---GIRLLG-TTHAEAMSILKQC 80 (97)
T ss_dssp EEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECSS-CCHHHHHHHHHHS
T ss_pred EEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHcC
Confidence 445555 35888765542 4589999999999999999 99999986553 332222 0133344555553
Q ss_pred CCCceEEecC
Q 038893 119 PDSVYFVVNR 128 (235)
Q Consensus 119 ~~a~if~~~~ 128 (235)
.+...+.+.+
T Consensus 81 g~~v~l~v~R 90 (97)
T 2jil_A 81 GQEAALLIEY 90 (97)
T ss_dssp CSEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 3344455554
No 23
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.19 E-value=0.016 Score=44.60 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=50.2
Q ss_pred ccceeeeeec----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCC-CCceEEecCc
Q 038893 56 PLGLTLGQKP----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP-DSVYFVVNRG 129 (235)
Q Consensus 56 plGl~~g~~~----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~-~a~if~~~~~ 129 (235)
.+|+.+.... ..+++|..+.+++.|+++| |+.||+|+.+- |..+-+ ......+++..+ ....|.+.+.
T Consensus 33 ~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~in---g~~v~~---~~~~~~~l~~~~g~~v~l~v~R~ 106 (124)
T 1wh1_A 33 KLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQIN---GIEVQN---REEAVALLTSEENKNFSLLIARP 106 (124)
T ss_dssp CCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEES---SCBCCS---HHHHHHHHTCSSCCSCCEEEEEC
T ss_pred cccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCC---HHHHHHHHHhCCCCEEEEEEEEC
Confidence 3666554432 3689999999999999999 99999987653 444433 334555666543 4556777775
Q ss_pred eeeeeccc
Q 038893 130 GADVDVKR 137 (235)
Q Consensus 130 g~~~d~~~ 137 (235)
+...+..-
T Consensus 107 g~~~~~~~ 114 (124)
T 1wh1_A 107 ELQLDEGW 114 (124)
T ss_dssp SSCCCCCC
T ss_pred CEEeeccc
Confidence 54444333
No 24
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=96.18 E-value=0.021 Score=40.73 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=35.4
Q ss_pred EEEeec--Cccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVD--KPLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|+++ .++|+.+... ....++|..+.+|+.|+++|++.||+|..+
T Consensus 5 ~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~i 54 (88)
T 2uzc_A 5 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSI 54 (88)
T ss_dssp EEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEE
Confidence 344443 6688776543 345799999999999999999999988665
No 25
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=96.18 E-value=0.0091 Score=43.69 Aligned_cols=47 Identities=30% Similarity=0.595 Sum_probs=37.0
Q ss_pred EEEEeecC---ccceeeeeec--CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 48 TIEVEVDK---PLGLTLGQKP--GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 48 ~~~v~~~k---plGl~~g~~~--~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++|++.+ ++|+.+.... ...++|..+.+|+.|+++| ++.||+|..+
T Consensus 6 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~v 58 (97)
T 1n7e_A 6 IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAI 58 (97)
T ss_dssp EEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred EEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 36677764 4777665443 2689999999999999999 9999988665
No 26
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=96.13 E-value=0.022 Score=41.82 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=37.7
Q ss_pred CcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 67 GGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.+++|..+.+|+.|+++| ++.||+|..+. |..+-. .........++..++...+.+.+
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~in---g~~v~~-~~~~~~~~~l~~~~~~v~l~v~r 97 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVD---GMDLRD-ASHEQAVEAIRKAGNPVVFMVQS 97 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEET---TEECTT-CCHHHHHHHHHTCCSSEEEEEEC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHhCCCcEEEEEEE
Confidence 579999999999999999 99999987653 322211 01334455565555555565555
No 27
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=96.13 E-value=0.0077 Score=43.40 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=36.7
Q ss_pred eeEEEEeecC----ccceeeeee--cCCcEEEEEeecchHHHHh-cCCcCcceeee
Q 038893 46 SKTIEVEVDK----PLGLTLGQK--PGGGVVITAVEGGGNAAKA-GLKSGDQVLYT 94 (235)
Q Consensus 46 ~~~~~v~~~k----plGl~~g~~--~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~ 94 (235)
....+|++.| ++|+.+... ....++|..+.+++.|+++ |++.||.|..+
T Consensus 3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~i 58 (90)
T 1qav_A 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSV 58 (90)
T ss_dssp SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEE
T ss_pred CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEE
Confidence 3345666654 588766543 3467999999999999999 89999987554
No 28
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=96.11 E-value=0.041 Score=42.31 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred cccCchh-HHHHHHHhCCeeEEEEeecC----ccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeeccc
Q 038893 29 ATRSLDN-NKITARTAGASKTIEVEVDK----PLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSF 97 (235)
Q Consensus 29 ~~~~~~~-~~~lA~~lg~~~~~~v~~~k----plGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~ 97 (235)
..++|.. ++.+++ .....+|++.| .+|+.+.... ..++||..+.+|+.|+++| |+.||+|..+
T Consensus 9 ~~~~~~~~~~~~~~---~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~i--- 82 (128)
T 2db5_A 9 GNEDFNSVIQQMAQ---GRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAI--- 82 (128)
T ss_dssp CSSCHHHHHHHHHT---TCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEE---
T ss_pred CcHhHHHHHHhhcc---cCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE---
Confidence 3455544 334433 33334565543 5777664322 2379999999999999999 9999998665
Q ss_pred cCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 98 FGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 98 fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
-|..+.........+..+....+.+.|.+.+
T Consensus 83 ng~~v~~~~~~~~~~~~l~~~~~~v~l~v~r 113 (128)
T 2db5_A 83 NHTPLDQNISHQQAIALLQQTTGSLRLIVAR 113 (128)
T ss_dssp SSCBCSTTSCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CCEECCCCCCHHHHHHHHHcCCCeEEEEEEc
Confidence 4555541223334455555544555666666
No 29
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=96.09 E-value=0.0082 Score=43.61 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=32.9
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHH-hcCCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAK-AGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~-~Gi~~gD~i~~~ 94 (235)
.++|+.+....++.++|..+.+|+.|++ +|++.||.|..+
T Consensus 13 ~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~I 53 (88)
T 1kwa_A 13 EPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREI 53 (88)
T ss_dssp SCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred CceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 4588876654456899999999999999 779999988765
No 30
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=96.08 E-value=0.011 Score=42.49 Aligned_cols=46 Identities=33% Similarity=0.470 Sum_probs=35.1
Q ss_pred EEEeec--Cccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVD--KPLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
++++++ .++|+.+... ....++|..+.+|+.|+++|++.||+|..+
T Consensus 5 ~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~i 54 (89)
T 2q3g_A 5 FKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSI 54 (89)
T ss_dssp EEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 445554 5678766432 355799999999999999999999988654
No 31
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=96.00 E-value=0.037 Score=42.53 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=52.6
Q ss_pred EEEeec----Cccceeeeee-------cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhh
Q 038893 49 IEVEVD----KPLGLTLGQK-------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQ 116 (235)
Q Consensus 49 ~~v~~~----kplGl~~g~~-------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn 116 (235)
++|.+. ..+|+.+... ...++||..+.+|+.|+++| |+.||+|..+- |..+-.. ........++
T Consensus 17 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~-~~~~~~~~l~ 92 (129)
T 2dmz_A 17 YNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD---GVNIQGF-ANHDVVEVLR 92 (129)
T ss_dssp EEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEET---TBCCTTC-CHHHHHHHHH
T ss_pred EEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHH
Confidence 456663 3577766542 34689999999999999999 99999987764 3333220 0234455565
Q ss_pred cCCCCceEEecCcee
Q 038893 117 AKPDSVYFVVNRGGA 131 (235)
Q Consensus 117 ~~~~a~if~~~~~g~ 131 (235)
...+...|.+.+.+-
T Consensus 93 ~~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 93 NAGQVVHLTLVRRKT 107 (129)
T ss_dssp HCCSSEEEEEEEESS
T ss_pred cCCCeEEEEEEeCCc
Confidence 555566777777553
No 32
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=95.99 E-value=0.017 Score=43.58 Aligned_cols=82 Identities=27% Similarity=0.356 Sum_probs=51.8
Q ss_pred eeEEEEeecCc----cceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhh
Q 038893 46 SKTIEVEVDKP----LGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAI 115 (235)
Q Consensus 46 ~~~~~v~~~kp----lGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AI 115 (235)
..-.+|++.|+ +|+.+.... ..++||..+.+|+.|+++| ++.||+|..+ -|..+...........++
T Consensus 19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~i---ng~~v~~~~~~~~~~~~l 95 (117)
T 2o2t_A 19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI---NGQALDQTITHQQAISIL 95 (117)
T ss_dssp SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEE---TTEECCTTSCHHHHHHHH
T ss_pred CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE---CCEECCCCCCHHHHHHHH
Confidence 34456776654 677554322 3579999999999999999 9999998665 344443111333444555
Q ss_pred hcCCCCceEEecCce
Q 038893 116 QAKPDSVYFVVNRGG 130 (235)
Q Consensus 116 n~~~~a~if~~~~~g 130 (235)
....+...|.+.+.+
T Consensus 96 ~~~~~~v~l~v~R~~ 110 (117)
T 2o2t_A 96 QKAKDTVQLVIARGS 110 (117)
T ss_dssp HHCCSEEEEEEESSC
T ss_pred HcCCCEEEEEEEeCC
Confidence 554455556666633
No 33
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=95.94 E-value=0.021 Score=41.01 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=32.4
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
..+|+.+.... .++++|..+.+|+.|+.+|++.||+|..+
T Consensus 15 ~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~i 55 (90)
T 2he4_A 15 QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEV 55 (90)
T ss_dssp TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEE
T ss_pred CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEE
Confidence 45777665543 45799999999999999999999988655
No 34
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=95.89 E-value=0.014 Score=40.58 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=29.9
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+++|+.+. .+++|..+.+++.|+++| ++.||+|..+
T Consensus 13 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~i 49 (81)
T 2rcz_A 13 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKI 49 (81)
T ss_dssp CCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEE
T ss_pred CCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence 55666433 679999999999999999 9999988665
No 35
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.88 E-value=0.033 Score=41.14 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=49.8
Q ss_pred EEEeec--Cccceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 49 IEVEVD--KPLGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
++|++. .++|+.+.... +..++|..+.+|+.|+++|++.||+|..+ -|..+.... .-..+..+....+...+
T Consensus 7 ~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~i---ng~~v~~~~-~~~~~~~~~~~g~~v~l 82 (103)
T 1wf7_A 7 GSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSI---DGISAQGMT-HLEAQNKIKACTGSLNM 82 (103)
T ss_dssp EEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEE---TTEECSSCC-HHHHHHHHHHCSSEEEE
T ss_pred EEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE---CCEECCCCC-HHHHHHHHHcCCCeEEE
Confidence 445554 66887665432 34599999999999999999999998765 344332221 12333444444455667
Q ss_pred EecCcee
Q 038893 125 VVNRGGA 131 (235)
Q Consensus 125 ~~~~~g~ 131 (235)
.+.+.+-
T Consensus 83 ~v~R~g~ 89 (103)
T 1wf7_A 83 TLQRASA 89 (103)
T ss_dssp EECCCSC
T ss_pred EEEeCCC
Confidence 7776543
No 36
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=95.87 E-value=0.012 Score=42.43 Aligned_cols=41 Identities=34% Similarity=0.444 Sum_probs=33.1
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.++|+.+.... .++++|..+.+|+.|+.+|++.||.|..+-
T Consensus 14 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in 55 (91)
T 1g9o_A 14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVN 55 (91)
T ss_dssp TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEET
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEEC
Confidence 55787665443 468999999999999999999999876543
No 37
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=95.83 E-value=0.021 Score=41.04 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=35.1
Q ss_pred EEEeecC-----ccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVDK-----PLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k-----plGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|++.| .+|+.+.... ..+++|..+.+|+.|+++|++.||+|..+
T Consensus 8 ~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~v 59 (91)
T 1m5z_A 8 HKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQV 59 (91)
T ss_dssp EEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEE
T ss_pred EEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 3455543 5777665433 46899999999999999999999987654
No 38
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=95.79 E-value=0.034 Score=40.45 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=35.0
Q ss_pred EEEeecC----ccceeeeeec--------CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVDK----PLGLTLGQKP--------GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k----plGl~~g~~~--------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++++.| .+|+.+.... ..+++|..+.+++.|+++| ++.||+|..+
T Consensus 7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~i 65 (98)
T 1ihj_A 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65 (98)
T ss_dssp EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEE
T ss_pred EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 4566665 5777664321 2379999999999999999 9999988654
No 39
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.74 E-value=0.026 Score=41.60 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=48.5
Q ss_pred EEEeec---Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 49 IEVEVD---KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
.+|.+. ..+|+.+.... ..+++|..+.+|+.|+++|++.||+|..+- |..+-+.. ....+..++...+...+
T Consensus 8 r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in---g~~v~~~~-~~~~~~~l~~~g~~v~l 83 (102)
T 2d90_A 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVN---GKSVEALD-HDGVVEMIRKGGDQTTL 83 (102)
T ss_dssp EEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEES---SCBCTTSC-HHHHHHHHHHSTTEEEE
T ss_pred EEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC---CEECCCCC-HHHHHHHHHcCCCEEEE
Confidence 345554 34787766532 467999999999999999999999987653 33332211 22344455554445556
Q ss_pred EecC
Q 038893 125 VVNR 128 (235)
Q Consensus 125 ~~~~ 128 (235)
.+.+
T Consensus 84 ~v~r 87 (102)
T 2d90_A 84 LVLD 87 (102)
T ss_dssp EECS
T ss_pred EEEE
Confidence 6654
No 40
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=95.70 E-value=0.041 Score=39.82 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=32.2
Q ss_pred Cccceeeeee--------cCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQK--------PGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~--------~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..+|+.+... ...+++|..+.+|+.|+++|++.||+|..+-
T Consensus 14 ~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in 62 (97)
T 2w4f_A 14 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62 (97)
T ss_dssp TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 3477765432 2468999999999999999999999886553
No 41
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.68 E-value=0.013 Score=44.43 Aligned_cols=40 Identities=38% Similarity=0.622 Sum_probs=34.4
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++|+.+....+.+++|..+.+|+.|+++|++.||+|..+
T Consensus 30 ~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~v 69 (117)
T 1uit_A 30 EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEF 69 (117)
T ss_dssp CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEE
T ss_pred CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 4788877666567999999999999999999999988655
No 42
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=95.66 E-value=0.021 Score=41.12 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=36.0
Q ss_pred EEEeecCc---cceeeeee------cCCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 49 IEVEVDKP---LGLTLGQK------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~kp---lGl~~g~~------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.++++.++ +|+.+... ....++|..+.+|+.|+++| ++.||+|..+.
T Consensus 6 ~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vn 62 (97)
T 2iwn_A 6 FDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62 (97)
T ss_dssp EEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEET
T ss_pred EEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEEC
Confidence 44555543 78766554 24689999999999999999 99999887654
No 43
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=95.66 E-value=0.021 Score=42.83 Aligned_cols=70 Identities=30% Similarity=0.464 Sum_probs=47.8
Q ss_pred Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceE
Q 038893 55 KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 55 kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if 124 (235)
.++|+.+.-.. +.++||..+.+|+.|+++| ++.||+|..+. |..+ ++.. ..+.++....+.+.|
T Consensus 13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn---g~~v~~~~~~---~~~~~l~~~~~~v~l 86 (106)
T 4amh_A 13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN---NVALEEVTHE---EAVTALKNTSDFVYL 86 (106)
T ss_dssp CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECSSCCHH---HHHHHHHSCCSEEEE
T ss_pred CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC---CEECCCCCHH---HHHHHHhCCCCeEEE
Confidence 56787665321 3479999999999999999 99999987653 3333 2222 344556555666677
Q ss_pred EecCce
Q 038893 125 VVNRGG 130 (235)
Q Consensus 125 ~~~~~g 130 (235)
.+.+.+
T Consensus 87 ~v~R~~ 92 (106)
T 4amh_A 87 KVAKPG 92 (106)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 777744
No 44
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.65 E-value=0.021 Score=41.55 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=49.1
Q ss_pred EEEeec--Cccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 49 IEVEVD--KPLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
.++.++ .++|+.+... ...+++|..+.+++.|+++|++.||+|..+- |..+-.. ........++..++...+
T Consensus 8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~~~~v~l 83 (94)
T 1vb7_A 8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAIN---GQSAENM-LHAEAQSKIRQSASPLRL 83 (94)
T ss_dssp EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEET---TEECTTC-CHHHHHHHHHTCCSSEEE
T ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHhCCCcEEE
Confidence 344443 5688876543 2457999999999999999999999986543 3322221 013344555555556666
Q ss_pred EecCc
Q 038893 125 VVNRG 129 (235)
Q Consensus 125 ~~~~~ 129 (235)
.+.|.
T Consensus 84 ~v~R~ 88 (94)
T 1vb7_A 84 QLDRS 88 (94)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 66653
No 45
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=95.64 E-value=0.033 Score=42.66 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=49.0
Q ss_pred EEEeec---Cccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCC
Q 038893 49 IEVEVD---KPLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP 119 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~ 119 (235)
.+|++. .++|+.+.... +.++||..+.+|+.|+++| ++.||+|..+- |..+-.. .....+..+....
T Consensus 27 ~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn---g~~v~~~-~~~~~~~~l~~~~ 102 (117)
T 2fne_A 27 KSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN---GQSLEGV-THEEAVAILKRTK 102 (117)
T ss_dssp EEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECTTC-CHHHHHHHHHHCC
T ss_pred EEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCC
Confidence 346665 45777665432 3479999999999999999 99999987653 3222211 2334445555555
Q ss_pred CCceEEecC
Q 038893 120 DSVYFVVNR 128 (235)
Q Consensus 120 ~a~if~~~~ 128 (235)
+.+.+.+.+
T Consensus 103 ~~v~l~v~R 111 (117)
T 2fne_A 103 GTVTLMVLS 111 (117)
T ss_dssp SSEEEEEEE
T ss_pred CeEEEEEEe
Confidence 556666655
No 46
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.64 E-value=0.045 Score=40.55 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=47.0
Q ss_pred EEEeec---Cccceeeeeec--------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhh
Q 038893 49 IEVEVD---KPLGLTLGQKP--------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQ 116 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~--------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn 116 (235)
.++.+. ..+|+.+.... +..+||..+.+++.|+++| |+.||+|..+- |..+=.. .....+..+.
T Consensus 9 ~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~-~~~~~~~~l~ 84 (105)
T 1wha_A 9 HVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN---GVDVTEA-RHDHAVSLLT 84 (105)
T ss_dssp EEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEES---SCBCTTC-CHHHHHHHHT
T ss_pred EEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHH
Confidence 446654 45777665422 4689999999999999999 99999986653 3222110 1333444454
Q ss_pred cCCCCceEEecC
Q 038893 117 AKPDSVYFVVNR 128 (235)
Q Consensus 117 ~~~~a~if~~~~ 128 (235)
...+...|.+.+
T Consensus 85 ~~g~~v~l~v~R 96 (105)
T 1wha_A 85 AASPTIALLLER 96 (105)
T ss_dssp SCCSCEEEEEEE
T ss_pred cCCCeEEEEEEE
Confidence 444444455544
No 47
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=95.58 E-value=0.028 Score=40.87 Aligned_cols=47 Identities=34% Similarity=0.553 Sum_probs=36.1
Q ss_pred EEEeec---CccceeeeeecC---CcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 49 IEVEVD---KPLGLTLGQKPG---GGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~~---~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.+|++. .++|+.+....+ ++++|..+.+|+.|+++| ++.||+|..+-
T Consensus 6 ~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn 59 (98)
T 2opg_A 6 TTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVN 59 (98)
T ss_dssp EEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEEC
Confidence 345554 458887665433 689999999999999999 99999886653
No 48
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=95.58 E-value=0.019 Score=41.10 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=43.4
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCce
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g 130 (235)
+++|+.+. .+++|..+.+|+.|+++| ++.||+|..+- |..+-. ........++....+...|.+.+.|
T Consensus 15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~in---g~~v~~-~~~~~~~~~l~~~~~~v~l~v~r~g 83 (92)
T 3cyy_A 15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKIN---GTVTEN-MSLTDAKTLIERSKGKLKMVVQRDE 83 (92)
T ss_dssp SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEET---TEECTT-CCHHHHHHHHHTTTTEEEEEEEC--
T ss_pred CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHcCCCcEEEEEEeCC
Confidence 45676443 689999999999999999 99999987653 333320 0223344455554445556666644
No 49
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=95.57 E-value=0.019 Score=41.97 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=32.4
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..+|+.+.... .++++|..+.+++.|+++|++.||+|..+-
T Consensus 20 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in 61 (98)
T 2jxo_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVN 61 (98)
T ss_dssp TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 44777654432 458999999999999999999999886553
No 50
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=95.57 E-value=0.017 Score=44.76 Aligned_cols=42 Identities=33% Similarity=0.497 Sum_probs=35.3
Q ss_pred ecCccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 53 VDKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 53 ~~kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
-..++|+.+....+.+++|..+.+|+.|+++|++.||+|+.+
T Consensus 37 ~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~V 78 (124)
T 3tsv_A 37 KGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRV 78 (124)
T ss_dssp CSSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEE
T ss_pred CCCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 346788877655567899999999999999999999988655
No 51
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=95.54 E-value=0.023 Score=40.87 Aligned_cols=46 Identities=35% Similarity=0.593 Sum_probs=35.3
Q ss_pred EEEeecC----ccceeeeee-cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVDK----PLGLTLGQK-PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k----plGl~~g~~-~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|++.| ++|+.+... ...+++|..+.+|+.|+++| ++.||.|..+
T Consensus 6 ~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 57 (92)
T 2qg1_A 6 LTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57 (92)
T ss_dssp EEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred EEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 4566653 477765443 24689999999999999999 9999988654
No 52
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=95.51 E-value=0.053 Score=41.89 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=48.3
Q ss_pred chhHHHHHHHhCCeeEEEEeec--Cccceeeeee-----------cCCcEEEEEeecchHHHHhc-CCcCcceeeecccc
Q 038893 33 LDNNKITARTAGASKTIEVEVD--KPLGLTLGQK-----------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFF 98 (235)
Q Consensus 33 ~~~~~~lA~~lg~~~~~~v~~~--kplGl~~g~~-----------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~f 98 (235)
|...++..+-+.... +++... ..+|+.+... ...+++|..+.+|+.|+++| |+.||+|+.+-
T Consensus 13 ~~~~d~~s~~~~p~~-v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn--- 88 (123)
T 2iwq_A 13 LGTENLYFQSMQPRR-VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD--- 88 (123)
T ss_dssp ----------CCCEE-EEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEET---
T ss_pred cccccCCcccCCCEE-EEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC---
Confidence 444555555554432 233222 3477765321 13579999999999999999 99999987653
Q ss_pred CCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 99 GDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 99 G~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
|..+-. ........+++...+...+.+.+
T Consensus 89 g~~v~~-~~~~~~~~~l~~~~~~v~l~v~r 117 (123)
T 2iwq_A 89 GMDLRD-ASHEQAVEAIRKAGNPVVFMVQS 117 (123)
T ss_dssp TEECTT-CCHHHHHHHHHHCCSSEEEEEEC
T ss_pred CEECCC-CCHHHHHHHHHcCCCeEEEEEEE
Confidence 322211 01334455565555555666555
No 53
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=95.44 E-value=0.025 Score=42.63 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=45.9
Q ss_pred EEEeec----CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCce
Q 038893 49 IEVEVD----KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVY 123 (235)
Q Consensus 49 ~~v~~~----kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~i 123 (235)
.+|++. ..+|+.+.. ...+++|..+.+|+.|+++| ++.||+|..+ -|..+-.... -.....+....+...
T Consensus 4 ~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~I---ng~~v~~~~~-~~~~~~~~~~~~~v~ 78 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKF---NGDALEGLPF-QVCYALFKGANGKVS 78 (106)
T ss_dssp EEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEE---SSCBCSSSCH-HHHHHHHHSCBSCEE
T ss_pred EEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEE---CCEECCCCCH-HHHHHHHhCCCCeEE
Confidence 456665 346665433 34679999999999999999 9999988654 4444422111 122333444344455
Q ss_pred EEecC
Q 038893 124 FVVNR 128 (235)
Q Consensus 124 f~~~~ 128 (235)
+.+.+
T Consensus 79 l~v~R 83 (106)
T 2la8_A 79 MEVTR 83 (106)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
No 54
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=95.35 E-value=0.032 Score=39.51 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=31.2
Q ss_pred Cccceeeee--ecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~--~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+.. .....++|..+.+|+.|+++| ++.||.|..+
T Consensus 11 ~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~v 53 (85)
T 2i04_A 11 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 53 (85)
T ss_dssp TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 347775543 234569999999999999999 9999987654
No 55
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=95.28 E-value=0.018 Score=43.09 Aligned_cols=40 Identities=33% Similarity=0.566 Sum_probs=33.5
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+....+.+++|..+.+|+.|+++| ++.||+|..+
T Consensus 26 ~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~v 66 (111)
T 2dlu_A 26 SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKI 66 (111)
T ss_dssp SCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEE
T ss_pred CccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 457876655555789999999999999999 9999998665
No 56
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.28 E-value=0.033 Score=42.08 Aligned_cols=68 Identities=29% Similarity=0.441 Sum_probs=43.1
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhcC-CcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAGL-KSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~Gi-~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
++|+.+... +.+++|..+.+|+.|+++|+ +.||+|+.+- |..+-.. ........++...+...+.+.+
T Consensus 38 ~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vn---g~~v~~~-~~~~~~~~l~~~~~~v~l~v~r 106 (113)
T 1va8_A 38 PLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEIN---GIEIRGK-DVNEVFDLLSDMHGTLTFVLIP 106 (113)
T ss_dssp CCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEET---TEECTTC-CHHHHHHHHHHCCEEEEEEEEC
T ss_pred ceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCeEEEEEEE
Confidence 577755433 67899999999999999998 9999886652 3322110 1223444555444445555444
No 57
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=95.27 E-value=0.051 Score=42.00 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=39.4
Q ss_pred CcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 67 GGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
++++|..+.+|+.|+++| ++.||.|..+ -|..+ +++++ ....+....+...|.+.+
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~v---ng~~v~~~~~~~---~~~~l~~~~~~v~l~v~r 123 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEV---NGIEVSGKSLDQ---VTDMMIANSRNLIITVRP 123 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEE---TTEESTTCCHHH---HHHHHHHTTTSEEEEEEC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEE---CCEECCCCCHHH---HHHHHHcCCCeEEEEEEE
Confidence 579999999999999999 9999998665 34444 44433 334444444556666655
No 58
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=95.26 E-value=0.021 Score=41.66 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=34.5
Q ss_pred EEEeec----Cccceeeee---------ecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 49 IEVEVD----KPLGLTLGQ---------KPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~----kplGl~~g~---------~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.+|.+. .++|+.+.. .....++|..+.+|+.|+++|++.||+|..+-
T Consensus 6 r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~in 65 (96)
T 2ego_A 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65 (96)
T ss_dssp EEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEET
T ss_pred EEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 345554 357766543 12457999999999999999999999886553
No 59
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.26 E-value=0.041 Score=40.39 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=43.0
Q ss_pred cceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 57 LGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 57 lGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
+|+.+.... ..+++|..+.+++.|+++||+.||+|..+- |..+-+.. +-..+..+.. .+...+.+.+
T Consensus 24 lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~~~~-~~~~~~~~~~-~~~v~l~v~R 92 (100)
T 2eeh_A 24 LGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVN---GLSLESTT-MGSAVKVLTS-SSRLHMMVRR 92 (100)
T ss_dssp CSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEET---TEECSSCC-HHHHHHHHHS-CSSEEEEEEE
T ss_pred ccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC---CEECCCCC-HHHHHHhhcC-CCEEEEEEEE
Confidence 788665532 458999999999999999999999886543 33332222 2333444443 3445555554
No 60
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=95.26 E-value=0.026 Score=40.74 Aligned_cols=41 Identities=34% Similarity=0.511 Sum_probs=32.4
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..+|+.+.... ..+++|..+.+|+.|+++|++.||+|..+.
T Consensus 16 ~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~in 57 (95)
T 3r68_A 16 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVN 57 (95)
T ss_dssp TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEET
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEEC
Confidence 45777665432 348999999999999999999999886653
No 61
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.26 E-value=0.053 Score=39.42 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=43.7
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc-cccCccchhhhhhhcCCCCceEEecC
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL-WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l-W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
++|+.+.. ....++|..+.+|+.|+++| ++.||.|..+ -|..+ ++.++ ....+....+...|.+.+
T Consensus 19 ~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~i---ng~~v~~~~~~---~~~~l~~~~~~v~l~v~~ 86 (91)
T 2e7k_A 19 HLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEV---NGQPVGSDPRA---LQELLRNASGSVILKILS 86 (91)
T ss_dssp CCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEE---TTEECTTCHHH---HHHHHHTCCSSBCEEEEC
T ss_pred cEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEE---CCEECCCCHHH---HHHHHHcCCCeEEEEEEE
Confidence 57775544 35789999999999999998 9999988665 35555 33333 334444434445555443
No 62
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=95.23 E-value=0.03 Score=41.06 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=30.6
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|+.+.. ...+++|..+.+|+.|+++| ++.||+|..+
T Consensus 21 glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~I 59 (96)
T 2qkv_A 21 ELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKF 59 (96)
T ss_dssp CCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEE
T ss_pred CccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEE
Confidence 46765433 34679999999999999999 9999988654
No 63
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=95.21 E-value=0.023 Score=41.75 Aligned_cols=40 Identities=35% Similarity=0.618 Sum_probs=32.6
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++|+.+.... .+++||..+.+|+.|+++| ++.||+|..+
T Consensus 22 ~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v 63 (104)
T 3i4w_A 22 TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSV 63 (104)
T ss_dssp TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEE
T ss_pred CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence 46887665433 3489999999999999999 9999988654
No 64
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=95.17 E-value=0.043 Score=41.21 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=48.5
Q ss_pred EEEEeec----Cccceeeeee----cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccc--cCccchhhhhhh
Q 038893 48 TIEVEVD----KPLGLTLGQK----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWP--ADKLGFTKTAIQ 116 (235)
Q Consensus 48 ~~~v~~~----kplGl~~g~~----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~--~~~~g~~i~AIn 116 (235)
.++|.+. ..+|+.+... ....+||..+.+|+.|+++| ++.||+|..+- |..+-. +++ .+..|.
T Consensus 6 ~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn---g~~v~~~~~~~---~~~~l~ 79 (108)
T 3cbz_A 6 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVN---DMNFENMSNDD---AVRVLR 79 (108)
T ss_dssp EEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEETTSCCHHH---HHHHHH
T ss_pred EEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC---CEECCCCCHHH---HHHHHH
Confidence 3456665 4588765443 25789999999999999999 99999987653 333222 333 333333
Q ss_pred c---CCCCceEEecC
Q 038893 117 A---KPDSVYFVVNR 128 (235)
Q Consensus 117 ~---~~~a~if~~~~ 128 (235)
. .++...|.+.+
T Consensus 80 ~~~~~~~~v~l~v~R 94 (108)
T 3cbz_A 80 DIVHKPGPIVLTVAK 94 (108)
T ss_dssp HHHTSSSCEEEEEEC
T ss_pred hcccCCCeEEEEEEe
Confidence 3 24456666665
No 65
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=95.16 E-value=0.038 Score=40.01 Aligned_cols=46 Identities=35% Similarity=0.581 Sum_probs=35.2
Q ss_pred EEEeec---Cccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVD---KPLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
++|.+. .++|+.+.... ..+++|..+.+|+.|+++| ++.||+|..+
T Consensus 7 ~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~v 61 (96)
T 1d5g_A 7 FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61 (96)
T ss_dssp EEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEE
T ss_pred EEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence 455553 56777665421 3589999999999999999 9999988655
No 66
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=95.16 E-value=0.026 Score=41.78 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=46.2
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCce
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g 130 (235)
.++|+.+.... ..+++|..+.+|+.|+.+|++.||+|..+. |..+-... .......++...+...+.+.+.+
T Consensus 13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in---g~~v~~~~-~~~~~~~l~~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRIN---GVFVDKEE-HAQVVELVRKSGNSVTLLVLDGD 85 (106)
T ss_dssp CCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEET---TEECTTSC-HHHHHHHHHHTTTEEEEEEECHH
T ss_pred CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEEC---CEECCCCC-HHHHHHHHHhCCCEEEEEEEECC
Confidence 45666544332 357999999999999999999999987763 33331111 11344455544556667776644
No 67
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.15 E-value=0.035 Score=40.75 Aligned_cols=39 Identities=38% Similarity=0.637 Sum_probs=31.9
Q ss_pred ccceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 56 PLGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|+.+.... ..+++|..+.+++.|+++||+.||+|+.+
T Consensus 22 ~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~i 62 (101)
T 1uez_A 22 GLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRV 62 (101)
T ss_dssp CSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEE
T ss_pred cccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 5777665432 45799999999999999999999988654
No 68
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=95.13 E-value=0.056 Score=40.91 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=47.1
Q ss_pred Cccceeeeeec---CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCce-EEecCc
Q 038893 55 KPLGLTLGQKP---GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVY-FVVNRG 129 (235)
Q Consensus 55 kplGl~~g~~~---~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~i-f~~~~~ 129 (235)
.++|+.+.... ..+++|..+.+++.|+++| ++.||+|..+ -|..+-.. .....+..+...++... +.+.+.
T Consensus 27 ~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~i---ng~~v~~~-~~~~~~~~l~~~~~~~~~l~v~R~ 102 (119)
T 1x6d_A 27 AGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI---NGKSLKGT-THHDALAILRQAREPRQAVIVTRK 102 (119)
T ss_dssp SCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEE---TTEECSSC-CHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred CccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE---CCEECCCC-CHHHHHHHHHhCCCCeEEEEEEcC
Confidence 45777654432 4579999999999999999 9999998654 34333211 22344555655555554 555554
Q ss_pred ee
Q 038893 130 GA 131 (235)
Q Consensus 130 g~ 131 (235)
+-
T Consensus 103 ~~ 104 (119)
T 1x6d_A 103 LT 104 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 69
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.09 E-value=0.056 Score=40.12 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=46.8
Q ss_pred EEEeec---Cccceeee-----ee-----cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhh
Q 038893 49 IEVEVD---KPLGLTLG-----QK-----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTA 114 (235)
Q Consensus 49 ~~v~~~---kplGl~~g-----~~-----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~A 114 (235)
.+|++. .++|+.+. .. .+.++||..+.+|+.|+++| ++.||+|..+- |..+=.. ..-..+.+
T Consensus 11 ~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~-~~~~~~~~ 86 (108)
T 1q7x_A 11 FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN---GVSLEGA-THKQAVET 86 (108)
T ss_dssp EEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEET---TEECBSC-TTSHHHHH
T ss_pred EEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC---CEECCCC-CHHHHHHH
Confidence 445554 46887665 11 24689999999999999999 99999886653 2222110 22233444
Q ss_pred hhcCCCCceEEecC
Q 038893 115 IQAKPDSVYFVVNR 128 (235)
Q Consensus 115 In~~~~a~if~~~~ 128 (235)
+....+...|.+.+
T Consensus 87 ~~~~g~~v~l~v~R 100 (108)
T 1q7x_A 87 LRNTGQVVHLLLEK 100 (108)
T ss_dssp HHHTTSEEEEEEEC
T ss_pred HHcCCCeEEEEEEe
Confidence 54444444555555
No 70
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=95.07 E-value=0.0078 Score=49.02 Aligned_cols=27 Identities=30% Similarity=0.757 Sum_probs=20.9
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
-.|+|..||++|+.. +..-.||.||++
T Consensus 131 ~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CCEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 369999999999762 222389999986
No 71
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.016 Score=42.20 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=34.9
Q ss_pred EEeec--Cccceeeee--ecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 50 EVEVD--KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~--kplGl~~g~--~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
+|++. .++|+.+.. .....++|..+.+++.|+++|++.||+|..+
T Consensus 11 ~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~i 59 (94)
T 2eeg_A 11 SVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAI 59 (94)
T ss_dssp EEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEE
T ss_pred EEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 44444 567876643 2356799999999999999999999988665
No 72
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=95.06 E-value=0.034 Score=42.84 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=46.8
Q ss_pred EeecCccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEec
Q 038893 51 VEVDKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVN 127 (235)
Q Consensus 51 v~~~kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~ 127 (235)
++-...+|+.+... +....|..+.+|+.|+.+|++.||+|..+- |..+ .+.+++-..+....+..++..|.++
T Consensus 24 ~~~~~g~G~~l~~~-~~~~~I~~V~~gSpA~~AGL~~GD~I~~In---g~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 24 LPQEEDYGFDIEEK-NKAVVVKSVQRGSLAEVAGLQVGRKIYSIN---EDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp CCCSSSSSEEEEEE-TTEEEEEEECTTSHHHHHTCCTTCBEEEET---TEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EeCCCcccEEEEcc-CCCeEEEEECCCCHHHHcCCCCCCEEEEEC---CEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 34456788877663 667899999999999999999999876653 4332 3444444443333233444444443
No 73
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=95.01 E-value=0.037 Score=43.77 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=39.7
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCC-CceEEecCce
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPD-SVYFVVNRGG 130 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~-a~if~~~~~g 130 (235)
..+++|..+.+|+.|+++|++.||+|+.+- |..+-. ........+++..++ ...+.+.+.|
T Consensus 63 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vn---g~~v~~-~~~~~~~~~l~~~~g~~v~l~v~R~g 124 (139)
T 2vz5_A 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVN---GWDMTM-VTHDQARKRLTKRSEEVVRLLVTRQS 124 (139)
T ss_dssp CCCEEEEEECTTSHHHHHTCCTTCEEEEET---TEECTT-CCHHHHHHHHCCTTCSEEEEEEEECC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEEC---CEEcCC-CCHHHHHHHHHhCCCCEEEEEEEECC
Confidence 368999999999999999999999987653 222211 013344555555443 3456665544
No 74
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=94.96 E-value=0.043 Score=41.92 Aligned_cols=70 Identities=26% Similarity=0.368 Sum_probs=48.0
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCc--cchhhhhhhcCCCCce-EEecCce
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADK--LGFTKTAIQAKPDSVY-FVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~--~g~~i~AIn~~~~a~i-f~~~~~g 130 (235)
..+|+.+.... .++++|..+.+++.|+++|++.||+|..+. |..+ .. ......+++..++..+ +.+.+.|
T Consensus 20 ~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~in---g~~v---~~~~~~~~~~~l~~~~~~~~~l~v~R~g 93 (128)
T 2kjd_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVN---GVCM---EGKQHGDVVSAIRAGGDETKLLVVDRET 93 (128)
T ss_dssp SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEET---TEEC---TTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEEC---CEEC---CCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence 45777665433 458999999999999999999999987764 2222 22 3345566666655554 6666644
No 75
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=94.93 E-value=0.056 Score=40.01 Aligned_cols=45 Identities=31% Similarity=0.540 Sum_probs=34.4
Q ss_pred EEeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 50 EVEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|++. .++|+.+.... +.+++|..+.+|+.|+++| ++.||.|..+
T Consensus 6 ~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 61 (105)
T 2awx_A 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61 (105)
T ss_dssp EEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 45543 46787665432 2489999999999999999 9999988654
No 76
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=94.91 E-value=0.033 Score=40.43 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=32.5
Q ss_pred Cccceeeeeec----CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQKP----GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~~----~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..+|+.+.... ..+++|..+.+|+.|+++|++.||+|..+-
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in 58 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVA 58 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEET
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 46777665532 236999999999999999999999886553
No 77
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=94.89 E-value=0.05 Score=40.75 Aligned_cols=78 Identities=22% Similarity=0.422 Sum_probs=50.1
Q ss_pred EEEeec---Cccceeeeee--------cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhh
Q 038893 49 IEVEVD---KPLGLTLGQK--------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQ 116 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~--------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn 116 (235)
.+|++. .++|+.+... ...++||..+.+|+.|+++| ++.||+|..+- |..+-... .-..+.++.
T Consensus 6 ~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vn---g~~v~~~~-~~~~~~~~~ 81 (113)
T 2g5m_B 6 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD---GTSLVGVT-QSFAASVLR 81 (113)
T ss_dssp EEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEET---TEECSSCC-HHHHHHHHH
T ss_pred EEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCC-HHHHHHHHh
Confidence 345554 4577765441 24689999999999999999 99999987653 33332111 223344555
Q ss_pred cCCCCceEEecCce
Q 038893 117 AKPDSVYFVVNRGG 130 (235)
Q Consensus 117 ~~~~a~if~~~~~g 130 (235)
...+...|.+.+.+
T Consensus 82 ~~g~~v~l~v~R~~ 95 (113)
T 2g5m_B 82 NTKGRVRFMIGRER 95 (113)
T ss_dssp HSCSSCEEEEEECC
T ss_pred cCCCeEEEEEEeCC
Confidence 55566677777644
No 78
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=94.89 E-value=0.029 Score=42.17 Aligned_cols=70 Identities=34% Similarity=0.443 Sum_probs=46.1
Q ss_pred CccceeeeeecC---CcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQKPG---GGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~~~---~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
..+|+.+....+ ++++|..+.+|+.|+++| ++.||+|..+- |..+ |+ ....+..+....+...|.+.+
T Consensus 28 ~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~~---~~~~~~~l~~~~~~v~l~v~R 101 (116)
T 2dm8_A 28 SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN---GVDLRNSS---HEEAITALRQTPQKVRLVVYR 101 (116)
T ss_dssp SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEET---TEECSSSC---HHHHHHHHHTCCSEEEEEEEC
T ss_pred CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEEC---CEECCCCC---HHHHHHHHHhCCCeEEEEEEe
Confidence 457776654332 589999999999999999 99999987653 3333 22 223344455444555666665
Q ss_pred ce
Q 038893 129 GG 130 (235)
Q Consensus 129 ~g 130 (235)
.+
T Consensus 102 ~~ 103 (116)
T 2dm8_A 102 DE 103 (116)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 79
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=94.88 E-value=0.056 Score=40.72 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=37.2
Q ss_pred eeEEEEeecC---ccceeeeee--cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 46 SKTIEVEVDK---PLGLTLGQK--PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 46 ~~~~~v~~~k---plGl~~g~~--~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
....+|++.| .+|+.+... ...+++|..+.+|+.|+++| ++.||+|..+
T Consensus 23 ~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~V 77 (112)
T 2r4h_A 23 MDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEI 77 (112)
T ss_dssp CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEE
T ss_pred CceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 3344566643 578766443 35789999999999999999 9999988654
No 80
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=94.82 E-value=0.055 Score=40.09 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=35.2
Q ss_pred EEEee--c---Cccceeeeee-------cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEV--D---KPLGLTLGQK-------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~--~---kplGl~~g~~-------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++++ + ..+|+.+... .+.+++|..+.+|+.|+++| ++.||+|..+
T Consensus 14 ~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v 72 (108)
T 2jre_A 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72 (108)
T ss_dssp EEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEE
T ss_pred EEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence 44666 3 3477766432 24589999999999999999 9999998765
No 81
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=94.77 E-value=0.06 Score=38.46 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=30.6
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+... ....++|..+.+|+.|+++| ++.||+|..+
T Consensus 13 ~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~i 55 (90)
T 2q9v_A 13 TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISV 55 (90)
T ss_dssp TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence 3477755432 22349999999999999999 9999987654
No 82
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=94.77 E-value=0.044 Score=43.83 Aligned_cols=50 Identities=34% Similarity=0.455 Sum_probs=37.4
Q ss_pred CeeEEEEeecC----ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 45 ASKTIEVEVDK----PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 45 ~~~~~~v~~~k----plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
|..-.+|.+.| .+|+.+.. .+.+++|..+.+|+.|+++|++.||+|..+-
T Consensus 2 a~~~r~v~l~k~~~~~lG~~~~~-~~~g~~V~~v~~~spA~~aGl~~GD~I~~in 55 (166)
T 1w9e_A 2 AMDPREVILCKDQDGKIGLRLKS-IDNGIFVQLVQANSPASLVGLRFGDQVLQIN 55 (166)
T ss_dssp -CCCEEEEEECCTTSCCSEEEEE-ETTEEEEEEECTTSHHHHTTCCTTCEEEEET
T ss_pred CCCCEEEEEEeCCCCcEeEEEEe-CCCCEEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 33334555543 48885544 4688999999999999999999999987663
No 83
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=94.76 E-value=0.053 Score=39.26 Aligned_cols=47 Identities=30% Similarity=0.535 Sum_probs=35.2
Q ss_pred eEEEEeec--Cccceeeeee----------cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 47 KTIEVEVD--KPLGLTLGQK----------PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 47 ~~~~v~~~--kplGl~~g~~----------~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
...+|++. ..+|+.+... .+.+++|..+.+++.|++ |++.||+|..+
T Consensus 3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~v 61 (95)
T 1mfg_A 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQA 61 (95)
T ss_dssp EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEE
T ss_pred eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEE
Confidence 34556655 3588776542 235899999999999999 99999987654
No 84
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.74 E-value=0.057 Score=40.70 Aligned_cols=44 Identities=39% Similarity=0.523 Sum_probs=32.9
Q ss_pred Eeec--Cccceeeee----ecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 51 VEVD--KPLGLTLGQ----KPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 51 v~~~--kplGl~~g~----~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+.+. ..+|+.+.- ...+.+||..+.+|+.|+++| ++.||.|..+
T Consensus 19 v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~V 69 (109)
T 1wi4_A 19 ITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69 (109)
T ss_dssp EEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEE
T ss_pred EEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence 4444 456765542 123579999999999999999 9999987654
No 85
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=94.72 E-value=0.048 Score=42.67 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=25.2
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeee
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
++||..+.+|+.|+++|++.||+|..+
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~V 92 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEV 92 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 699999999999999999999998765
No 86
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.71 E-value=0.064 Score=39.95 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=48.6
Q ss_pred EEEeec---Cccceeeeee-----cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCC
Q 038893 49 IEVEVD---KPLGLTLGQK-----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP 119 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~-----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~ 119 (235)
.+|++. ..+|+.+... ..+++||..+.+++.|+++| ++.||+|..+- |..+=.. ..-..+..+....
T Consensus 10 ~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~-~~~~~~~~~~~~~ 85 (110)
T 1um1_A 10 FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN---GSSLLGL-GYLRAVDLIRHGG 85 (110)
T ss_dssp EEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEES---SCBCSSC-CHHHHHHHHHTCC
T ss_pred EEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCC
Confidence 445554 3477766542 24679999999999999999 99999986653 3333111 1223344444444
Q ss_pred CCceEEecCce
Q 038893 120 DSVYFVVNRGG 130 (235)
Q Consensus 120 ~a~if~~~~~g 130 (235)
+...|.+.+.+
T Consensus 86 ~~v~l~v~R~~ 96 (110)
T 1um1_A 86 KKMRFLVAKSD 96 (110)
T ss_dssp SEEEEEEECCC
T ss_pred CeEEEEEEeCC
Confidence 45556666643
No 87
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.71 E-value=0.072 Score=39.54 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=34.9
Q ss_pred EEEeecC---ccceeeeee----------cCCcEEEEEeecchHHHHh-cCCcCcceeee
Q 038893 49 IEVEVDK---PLGLTLGQK----------PGGGVVITAVEGGGNAAKA-GLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k---plGl~~g~~----------~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~ 94 (235)
++|.+.| ++|+.+... ....+||..+.+++.|+++ |++.||+|..+
T Consensus 10 ~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~v 69 (107)
T 1uhp_A 10 LTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69 (107)
T ss_dssp EEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEE
T ss_pred EEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence 4566653 477765431 2468999999999999999 89999988654
No 88
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.69 E-value=0.043 Score=40.38 Aligned_cols=47 Identities=32% Similarity=0.466 Sum_probs=35.4
Q ss_pred EEEeec---Cccceeeeeec----CCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 49 IEVEVD---KPLGLTLGQKP----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.++++. ..+|+.+.... +..++|..+.+|+.|+++| |+.||+|+.+-
T Consensus 13 ~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vn 67 (104)
T 2djt_A 13 FSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHIN 67 (104)
T ss_dssp EEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEET
T ss_pred EEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 345544 45777665422 4679999999999999999 99999986653
No 89
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=94.69 E-value=0.035 Score=41.52 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=32.3
Q ss_pred Cccceeeeee------cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQK------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+... .+..+||..+.+|+.|+++| ++.||.|..+
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~V 72 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEE
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 5688766432 24679999999999999999 9999988655
No 90
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=94.69 E-value=0.043 Score=40.87 Aligned_cols=68 Identities=21% Similarity=0.410 Sum_probs=44.7
Q ss_pred Cccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcC--CCCceE
Q 038893 55 KPLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAK--PDSVYF 124 (235)
Q Consensus 55 kplGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~--~~a~if 124 (235)
..+|+.+.... ..+++|..+.+|+.|+++| ++.||+|+.+ -|..+ |+.+++ +..++.. .....|
T Consensus 22 ~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~i---ng~~v~~~~~~~~---~~~l~~~~~g~~v~l 95 (111)
T 2koj_A 22 EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV---NGVDLAGKSQEEV---VSLLRSTKMEGTVSL 95 (111)
T ss_dssp TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEE---TTEECTTSCHHHH---HHHHHHCCCSSEEEE
T ss_pred CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEE---CCEECCCCCHHHH---HHHHHhCCCCCeEEE
Confidence 45787766543 2579999999999999999 9999998665 34444 444433 3344443 234455
Q ss_pred EecC
Q 038893 125 VVNR 128 (235)
Q Consensus 125 ~~~~ 128 (235)
.+.+
T Consensus 96 ~v~R 99 (111)
T 2koj_A 96 LVFR 99 (111)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 91
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=94.66 E-value=0.051 Score=41.07 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=34.7
Q ss_pred EEeecC---ccceeeeeec-CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 50 EVEVDK---PLGLTLGQKP-GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~k---plGl~~g~~~-~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|.+.| .+|+.+.... ..+++|..+.+|+.|+++| ++.||+|..+
T Consensus 17 ~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 66 (119)
T 1tp5_A 17 RIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSV 66 (119)
T ss_dssp EEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred EEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 455543 3777655432 3689999999999999999 9999988665
No 92
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=94.65 E-value=0.051 Score=41.62 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=48.0
Q ss_pred EEeec---Cccceeeeeec---CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCc
Q 038893 50 EVEVD---KPLGLTLGQKP---GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSV 122 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~---~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~ 122 (235)
+|.+. .++|+.+.... ...++|..+.+|+.|+++| ++.||+|..+ -|..+-... .-..+..+....+..
T Consensus 28 ~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~I---ng~~v~~~~-~~~~~~~~~~~~~~v 103 (124)
T 2daz_A 28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI---NNQILYGRS-HQNASAIIKTAPSKV 103 (124)
T ss_dssp EEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEE---SSCBCTTSC-HHHHHHHHHHSCSEE
T ss_pred EEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEE---CCEECCCCC-HHHHHHHHHcCCCeE
Confidence 45554 45887765432 3589999999999999999 9999988654 444441111 112234454545556
Q ss_pred eEEecC
Q 038893 123 YFVVNR 128 (235)
Q Consensus 123 if~~~~ 128 (235)
.|.+.+
T Consensus 104 ~l~v~R 109 (124)
T 2daz_A 104 KLVFIR 109 (124)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666655
No 93
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.063 Score=40.75 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=47.7
Q ss_pred Eeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCC
Q 038893 51 VEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP 119 (235)
Q Consensus 51 v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~ 119 (235)
|.+. ..+|+.+.... ...+||..+.+++.|+++| |+.||+|..+- |..+-... .-..+..+....
T Consensus 21 v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn---g~~v~~~~-~~~~~~~~~~~g 96 (120)
T 2eno_A 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN---GQDLKNLL-HQDAVDLFRNAG 96 (120)
T ss_dssp EEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEET---TEECCSCC-HHHHHHHHHHHC
T ss_pred EEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC---CEECCCCC-HHHHHHHHHcCC
Confidence 5554 34777665422 4589999999999999999 99999987653 32222111 113344444434
Q ss_pred CCceEEecCce
Q 038893 120 DSVYFVVNRGG 130 (235)
Q Consensus 120 ~a~if~~~~~g 130 (235)
+...|.+.+.+
T Consensus 97 ~~v~l~v~R~~ 107 (120)
T 2eno_A 97 YAVSLRVQHRL 107 (120)
T ss_dssp SEEEEEEEEEE
T ss_pred CeEEEEEEeCC
Confidence 45667776633
No 94
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.59 E-value=0.033 Score=41.46 Aligned_cols=45 Identities=27% Similarity=0.506 Sum_probs=34.5
Q ss_pred EEeec---Cccceeeeee--------cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 50 EVEVD---KPLGLTLGQK--------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~--------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|.+. .++|+.+... .+.++||..+.+|+.|+++| ++.||+|..+
T Consensus 12 ~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 68 (107)
T 1wf8_A 12 PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68 (107)
T ss_dssp EEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEE
T ss_pred EEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence 35553 4678766541 24579999999999999999 9999988654
No 95
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.58 E-value=0.022 Score=42.17 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=45.5
Q ss_pred ecCccceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 53 VDKPLGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 53 ~~kplGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
-..++|+.+.... +..++|..+.+++.|+++|++.||+|..+- |..+-. ........+++...+...+.+.+
T Consensus 13 ~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~~-~~~~~~~~~l~~~g~~v~l~v~R 86 (103)
T 1v5l_A 13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAID---GFGTES-MTHADAQDRIKAASYQLCLKIDR 86 (103)
T ss_dssp SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEET---TEECSS-CCHHHHHHHHTTCCSEEECEECC
T ss_pred CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHhCCCeEEEEEEE
Confidence 3467888775543 357999999999999999999999886553 322221 00333444555443444455544
No 96
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=94.58 E-value=0.049 Score=39.96 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=45.8
Q ss_pred EEeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcC
Q 038893 50 EVEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK 118 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~ 118 (235)
+|++. ..+|+.+.... ..++||..+.+|+.|+++| ++.||.|..+- |..+-.. .....+.++...
T Consensus 7 ~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn---g~~v~~~-~~~~~~~~~~~~ 82 (102)
T 2i1n_A 7 EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN---EVDVSEV-VHSRAVEALKEA 82 (102)
T ss_dssp EEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECSSC-CHHHHHHHHHHS
T ss_pred EEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcC
Confidence 34554 45777665422 4689999999999999999 99999886653 3322111 122334444443
Q ss_pred CCCceEEecC
Q 038893 119 PDSVYFVVNR 128 (235)
Q Consensus 119 ~~a~if~~~~ 128 (235)
.+...|.+.+
T Consensus 83 g~~v~l~v~R 92 (102)
T 2i1n_A 83 GPVVRLVVRR 92 (102)
T ss_dssp CSEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 3444555555
No 97
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=94.57 E-value=0.047 Score=39.46 Aligned_cols=67 Identities=19% Similarity=0.460 Sum_probs=44.1
Q ss_pred Cccceeeeee-cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEec
Q 038893 55 KPLGLTLGQK-PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVN 127 (235)
Q Consensus 55 kplGl~~g~~-~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~ 127 (235)
.++|+.+... .+..++|..+.+|+.|+++| ++.||.|..+. |..+ ++++++ ...+....+...|.+.
T Consensus 15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~in---g~~v~~~~~~~~---~~~l~~~~~~v~l~v~ 85 (93)
T 3o46_A 15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVN---GIPVEDKRPEEI---IQILAQSQGAITFKII 85 (93)
T ss_dssp SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEET---TEESTTSCHHHH---HHHHHHCCEEEEEEEE
T ss_pred CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCCHHHH---HHHHHhCCCeEEEEEE
Confidence 4678765543 25789999999999999999 99999886653 4444 444433 3344444444444443
No 98
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=94.54 E-value=0.055 Score=38.89 Aligned_cols=45 Identities=36% Similarity=0.544 Sum_probs=34.0
Q ss_pred EEeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 50 EVEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|++. .++|+.+.... +.+++|..+.+|+.|+++| ++.||+|..+
T Consensus 6 ~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v 61 (94)
T 2fe5_A 6 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61 (94)
T ss_dssp EEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 45553 45777665321 3479999999999999999 9999988654
No 99
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=94.53 E-value=0.048 Score=39.02 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.9
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|+.+.. ...+++|..+.+|+.|+.+|++.||+|..+
T Consensus 18 ~lG~~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 55 (90)
T 2eaq_A 18 DFGFTIKW-DIPGIFVASVEAGSPAEFSQLQVDDEIIAI 55 (90)
T ss_dssp CCSEEEEE-ETTEEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred cccEEEEe-cCCCEEEEEECCCChHHHcCCCCCCEEEEE
Confidence 47775543 356899999999999999999999987654
No 100
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.53 E-value=0.038 Score=40.99 Aligned_cols=47 Identities=34% Similarity=0.477 Sum_probs=35.3
Q ss_pred EEEeecC----ccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 49 IEVEVDK----PLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~k----plGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.+|.+.| ++|+.+... ...+++|..+.+++.|+++||+.||+|..+-
T Consensus 17 ~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in 69 (104)
T 1wi2_A 17 RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVN 69 (104)
T ss_dssp EEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred EEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence 3455553 477765543 2357999999999999999999999886653
No 101
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=94.50 E-value=0.076 Score=39.15 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=36.1
Q ss_pred ccceeeeeecC----CcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCc--cccCcc
Q 038893 56 PLGLTLGQKPG----GGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDEL--WPADKL 108 (235)
Q Consensus 56 plGl~~g~~~~----~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~l--W~~~~~ 108 (235)
++|+.+..... +.++|..+.+|+.|+++ |++.||+|..+ -|..+ ++++++
T Consensus 22 ~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~I---ng~~v~~~~~~~~ 78 (101)
T 2yt7_A 22 GLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI---NGTSLVGLPLAAC 78 (101)
T ss_dssp CCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEE---SSCBCTTSCHHHH
T ss_pred ccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEE---CCEECCCCCHHHH
Confidence 58877654322 36999999999999995 59999988654 45555 554443
No 102
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=94.49 E-value=0.051 Score=39.28 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=39.2
Q ss_pred CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 66 GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.+++||..+.+|+.|+++| ++.||+|..+. |..+ ++++ +.+..|....+...|.+.+
T Consensus 20 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~in---g~~v~~~~~~---~~~~~i~~~~~~v~L~v~~ 79 (88)
T 3e17_A 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKIN---GTVTENMSLT---DARKLIEKSRGKLQLVVLR 79 (88)
T ss_dssp EEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECTTCCHH---HHHHHHHHTTTEEEEEECC
T ss_pred eCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCCHH---HHHHHHHcCCCeEEEEEeC
Confidence 4589999999999999999 99999886653 3333 3333 3344455555555555554
No 103
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=94.47 E-value=0.085 Score=40.24 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=46.0
Q ss_pred EEeec---Cccceeeeee-------cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcC
Q 038893 50 EVEVD---KPLGLTLGQK-------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK 118 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~-------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~ 118 (235)
+|.+. ..+|+.+... .+.+++|..+.+|+.|+++| ++.||+|..+- |..+-. ......+..+...
T Consensus 27 ~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn---g~~v~~-~~~~~~~~~l~~~ 102 (117)
T 2byg_A 27 EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVN---NYSLEE-VTHEEAVAILKNT 102 (117)
T ss_dssp EEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECTT-CCHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHcC
Confidence 35543 3577766542 13479999999999999999 99999986653 322221 1222334445444
Q ss_pred CCCceEEecC
Q 038893 119 PDSVYFVVNR 128 (235)
Q Consensus 119 ~~a~if~~~~ 128 (235)
.+.+.+.+.+
T Consensus 103 g~~v~l~v~R 112 (117)
T 2byg_A 103 SEVVYLKVGK 112 (117)
T ss_dssp CSEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 4455566555
No 104
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.44 E-value=0.047 Score=39.23 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=32.4
Q ss_pred Cccceeeee--ecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~--~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++|+.+.. ..+..++|..+.+++.|+++| ++.||+|..+
T Consensus 16 ~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~v 58 (93)
T 2dkr_A 16 EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSV 58 (93)
T ss_dssp TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEE
T ss_pred CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 567876653 235689999999999999996 9999988665
No 105
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=94.43 E-value=0.016 Score=45.27 Aligned_cols=28 Identities=25% Similarity=0.877 Sum_probs=20.4
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
+..|+|..|||++... -..|. +||.|+.
T Consensus 65 v~p~~C~~CG~~F~~~---~~kPs--rCP~CkS 92 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAE---INIPS--RCPKCKS 92 (105)
T ss_dssp ECCCBBTTTCCBCCCC---SSCCS--SCSSSCC
T ss_pred EECcChhhCcCeeccc---CCCCC--CCcCCCC
Confidence 5679999999999321 12344 9999976
No 106
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.42 E-value=0.045 Score=41.63 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=45.2
Q ss_pred Cccceeeeeec---CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQKP---GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~~---~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++|+.+.... .+.+||..+.+|+.|+++| ++.||.|..+ -|..+ +++++ ....+....+...|.+.+
T Consensus 27 ~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~I---ng~~v~~~~~~~---~~~~l~~~g~~v~l~v~r 100 (117)
T 1v62_A 27 SALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI---DGTSMEHCSLLE---ATKLLASISEKVRLEILP 100 (117)
T ss_dssp CCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEE---TTEETTSCCHHH---HHHHHHSCSSEEEEEECC
T ss_pred CcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE---CCEECCCCCHHH---HHHHHHhCCCeEEEEEEE
Confidence 35777655432 2459999999999999999 9999998754 34444 44443 334444444556666666
No 107
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=94.38 E-value=0.041 Score=39.14 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.6
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHH-hcCCcCcceeee
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAK-AGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~-~Gi~~gD~i~~~ 94 (235)
..+|+.+... ....+||..+.+|+.|++ +|++.||+|..+
T Consensus 14 ~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~v 56 (87)
T 4e34_A 14 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 56 (87)
T ss_dssp BCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred CcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEE
Confidence 3577755432 234699999999999999 599999987654
No 108
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=94.38 E-value=0.07 Score=40.80 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHhCCeeE-EEEeecC----ccceeeeee--cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhh
Q 038893 41 RTAGASKT-IEVEVDK----PLGLTLGQK--PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTK 112 (235)
Q Consensus 41 ~~lg~~~~-~~v~~~k----plGl~~g~~--~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i 112 (235)
+.+|-... .++++.| .+|+.+... ..+.+||..+.+|+.|+++| ++.||.|..+. |..+- ........
T Consensus 12 ~~~g~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~in---g~~v~-~~~~~~~~ 87 (125)
T 3hpk_A 12 DKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN---GRSIK-GKTKVEVA 87 (125)
T ss_dssp --CCCCEEEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECT-TCCHHHHH
T ss_pred cccCCcCCCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEEC---CEECC-CCCHHHHH
Confidence 34454432 3466654 477765443 24679999999999999999 99999987764 32221 00122334
Q ss_pred hhhhcCCCCceEEecC
Q 038893 113 TAIQAKPDSVYFVVNR 128 (235)
Q Consensus 113 ~AIn~~~~a~if~~~~ 128 (235)
..+....+...+.+.+
T Consensus 88 ~~l~~~~~~v~l~v~r 103 (125)
T 3hpk_A 88 KMIQEVKGEVTIHYNK 103 (125)
T ss_dssp HHHHHSCSEEEEEEEE
T ss_pred HHHHcCCCeEEEEEEE
Confidence 4455555556666655
No 109
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=94.34 E-value=0.057 Score=40.23 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=25.1
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeee
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
+++|..+.+|+.|+++|++.||+|..+
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~v 72 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEV 72 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 799999999999999999999988665
No 110
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.33 E-value=0.19 Score=38.42 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=47.7
Q ss_pred EEEeec--Cccceeeeeec--CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 49 IEVEVD--KPLGLTLGQKP--GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~~--~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
.++++. ..+|+.+.... +.+++|..+.+|+.|+++|++.||+|..+- |..+-.... -..+..+.. .....|
T Consensus 24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vn---g~~v~~~~~-~~~~~~~~~-~~~v~l 98 (128)
T 1uf1_A 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVN---GRSFLNILH-DEAVRLLKS-SRHLIL 98 (128)
T ss_dssp EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEET---TEECSSCCH-HHHHHHHTT-CSEEEE
T ss_pred EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEEC---CEECCCCCH-HHHHHHHhc-CCeEEE
Confidence 334443 45787654432 347999999999999999999999987653 333322222 223333333 345666
Q ss_pred EecCce
Q 038893 125 VVNRGG 130 (235)
Q Consensus 125 ~~~~~g 130 (235)
.+.+.|
T Consensus 99 ~v~R~g 104 (128)
T 1uf1_A 99 TVKDVG 104 (128)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 666655
No 111
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=94.30 E-value=0.052 Score=40.14 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
...++|..+.+|+.|+++||+.||+|..+
T Consensus 47 ~~~~~V~~V~~~spA~~aGl~~GD~I~~v 75 (104)
T 2z17_A 47 EMFTLICKIQEDSPAHCAGLQAGDVLANI 75 (104)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCBCCEE
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEE
Confidence 46899999999999999999999987554
No 112
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=94.29 E-value=0.1 Score=38.88 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=51.0
Q ss_pred EEEeec----Cccceeeeeec-CCcEEEEEeecchHHHHhcC-CcCcceeeeccccCCCccccCccchhhhhhhcCC-CC
Q 038893 49 IEVEVD----KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGL-KSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP-DS 121 (235)
Q Consensus 49 ~~v~~~----kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi-~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~-~a 121 (235)
++|++. ..+|+.+.... .+.++|..+.+|+.|+.+|+ +.||+|..+- |..+-+. ........++..+ ..
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~~g~~ 78 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN---DRPLVDL-SYDSALEVLRGIASET 78 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEET---TEECTTS-CHHHHHHHHHHSCSSS
T ss_pred EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHhCCCCc
Confidence 455552 35888766543 46899999999999999997 9999987654 3333220 1334445565544 45
Q ss_pred ceEEecCce
Q 038893 122 VYFVVNRGG 130 (235)
Q Consensus 122 ~if~~~~~g 130 (235)
..+.+.+.|
T Consensus 79 v~l~v~R~g 87 (112)
T 1qau_A 79 HVVLILRGP 87 (112)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 567776655
No 113
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.29 E-value=0.062 Score=41.15 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=35.0
Q ss_pred EEEeecC---ccceeeeee--cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVDK---PLGLTLGQK--PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k---plGl~~g~~--~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|.+.| .+|+.+... .+.++||..+.+++.|+++| |+.||+|+.+
T Consensus 21 ~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~V 72 (123)
T 1ueq_A 21 LSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72 (123)
T ss_dssp EEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred EEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 4566553 477765532 24569999999999999999 9999988665
No 114
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=94.24 E-value=0.032 Score=40.24 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=30.6
Q ss_pred Cccceeeeee-cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQK-PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~-~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
..+|+.+... ..++++|..+.+|+.|+++|++.||+|..+
T Consensus 14 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 54 (91)
T 2vsp_A 14 NGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEV 54 (91)
T ss_dssp TBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEE
T ss_pred CcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEE
Confidence 3467755442 246899999999999999999999988655
No 115
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=94.21 E-value=0.064 Score=39.23 Aligned_cols=45 Identities=27% Similarity=0.553 Sum_probs=34.5
Q ss_pred EEeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 50 EVEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|++. ..+|+.+.... +.+++|..+.+|+.|+++| ++.||+|..+
T Consensus 10 ~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 65 (101)
T 2jik_A 10 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65 (101)
T ss_dssp EEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 35554 45777665432 3589999999999999999 9999988665
No 116
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=94.17 E-value=0.065 Score=38.65 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=29.2
Q ss_pred cceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 57 LGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 57 lGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
+|+.+. ....++|..+.+|+.|+++|++.||+|..+-
T Consensus 16 ~G~~l~--~~~~~~V~~V~~~spA~~aGl~~GD~I~~vn 52 (91)
T 2f5y_A 16 FGFTIC--CDSPVRVQAVDSGGPAERAGLQQLDTVLQLN 52 (91)
T ss_dssp TSEEEE--CSSSCEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred ccEEEe--cCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 555442 2356999999999999999999999886653
No 117
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=94.16 E-value=0.089 Score=38.31 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=25.0
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
+++|..+.+|+.|+.+|++.||+|..+.
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~in 62 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHIN 62 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 5689999999999999999999887653
No 118
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=94.15 E-value=0.064 Score=41.28 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=43.4
Q ss_pred Cccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++|+.+.... +..+||..+.+|+.|+++| ++.||+|..+- |..+-.. .....+..+....+.+.|.+.+
T Consensus 36 ~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VN---g~~v~~~-~~~~~~~~l~~~~~~v~L~v~R 111 (118)
T 3b76_A 36 ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVD---GVELTEV-SRSEAVALLKRTSSSIVLKALE 111 (118)
T ss_dssp CCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEET---TEEGGGS-CHHHHHHHHHSCCSEEEEEEEE
T ss_pred CccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCeEEEEEEE
Confidence 45777654432 3469999999999999999 99999886543 3333210 1223344444444455555554
No 119
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.07 E-value=0.057 Score=40.23 Aligned_cols=40 Identities=33% Similarity=0.603 Sum_probs=31.8
Q ss_pred ccceeeeee--------cCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 56 PLGLTLGQK--------PGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 56 plGl~~g~~--------~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.+|+.+... ...+++|..+.+++.|+++||+.||+|..+-
T Consensus 27 glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in 74 (110)
T 1x5q_A 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 74 (110)
T ss_dssp SCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred eeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 477766431 3468999999999999999999999886543
No 120
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.04 E-value=0.095 Score=38.55 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=45.7
Q ss_pred EEeec--Cccceeeeee--cCCcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 50 EVEVD--KPLGLTLGQK--PGGGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 50 ~v~~~--kplGl~~g~~--~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
++++. .++|+.+... ....++|..+.+++.|+++ ||+.||+|..+ -|..+... ....+..+....+...|
T Consensus 14 ~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~i---ng~~v~~~--~~~~~~~~~~~~~~v~l 88 (100)
T 2edp_A 14 PVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNI---NGTPLYGS--RQEALILIKGSFRILKL 88 (100)
T ss_dssp EEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEE---TTEECCSC--SHHHHHHHHTCCSSCEE
T ss_pred EEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEE---CCEEccch--HHHHHHHHHhCCCeEEE
Confidence 34444 4677765442 3456999999999999999 89999988654 33333221 22333344443444556
Q ss_pred EecC
Q 038893 125 VVNR 128 (235)
Q Consensus 125 ~~~~ 128 (235)
.+.|
T Consensus 89 ~v~R 92 (100)
T 2edp_A 89 IVRR 92 (100)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
No 121
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=94.01 E-value=0.065 Score=39.64 Aligned_cols=46 Identities=33% Similarity=0.521 Sum_probs=34.7
Q ss_pred EEEeec--Cccceeeeee-----cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVD--KPLGLTLGQK-----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~--kplGl~~g~~-----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|+++ ..+|+.+... .+.++||..+.+|+.|+++| ++.||+|..+
T Consensus 13 ~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~i 66 (106)
T 3axa_A 13 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66 (106)
T ss_dssp EEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 345543 4577766431 34579999999999999999 9999988654
No 122
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=93.97 E-value=0.064 Score=44.16 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=50.2
Q ss_pred EEeec----Cccceeeee--ecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCce
Q 038893 50 EVEVD----KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVY 123 (235)
Q Consensus 50 ~v~~~----kplGl~~g~--~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~i 123 (235)
+|++. .++|+.+.. ....++||..+.+|+.|+++|++.||.|..+- |..+-. -.....+..+.. .+...
T Consensus 87 ~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vn---g~~v~~-~~~~~~~~~l~~-~~~v~ 161 (192)
T 3k1r_A 87 EVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRIN---GYSISS-CTHEEVINLIRT-EKTVS 161 (192)
T ss_dssp EEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEET---TEECTT-CCHHHHHHHHTS-SSEEE
T ss_pred EEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEEC---CEECCC-CCHHHHHHHHcC-CCeEE
Confidence 45554 357775532 23568999999999999999999999987753 332211 012334455555 66777
Q ss_pred EEecCcee
Q 038893 124 FVVNRGGA 131 (235)
Q Consensus 124 f~~~~~g~ 131 (235)
|.+.+.|.
T Consensus 162 l~v~r~g~ 169 (192)
T 3k1r_A 162 IKVRHIGL 169 (192)
T ss_dssp EEEEECCE
T ss_pred EEEEECCc
Confidence 77777553
No 123
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=93.93 E-value=0.11 Score=39.58 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=48.5
Q ss_pred EEEEeec----Cccceeeeee------cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhh
Q 038893 48 TIEVEVD----KPLGLTLGQK------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQ 116 (235)
Q Consensus 48 ~~~v~~~----kplGl~~g~~------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn 116 (235)
..+|.+. ..+|+.+... .+..++|..+.+++.|+++| |+.||+|+.+- |..+-. ....+....++
T Consensus 16 ~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~in---g~~v~~-~~~~~~~~~l~ 91 (122)
T 1v5q_A 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN---GIPTED-STFEEANQLLR 91 (122)
T ss_dssp EEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEET---TEESSS-SCHHHHHHHHH
T ss_pred eEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHH
Confidence 3456664 3477776542 24569999999999999999 99999987653 444422 01223344444
Q ss_pred cCC--CCceEEecC
Q 038893 117 AKP--DSVYFVVNR 128 (235)
Q Consensus 117 ~~~--~a~if~~~~ 128 (235)
..+ ....|.+.+
T Consensus 92 ~~~~g~~v~l~v~R 105 (122)
T 1v5q_A 92 DSSITSKVTLEIEF 105 (122)
T ss_dssp HHTTTTCEEEEEEE
T ss_pred hCCCCCeEEEEEEE
Confidence 432 355666665
No 124
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=93.93 E-value=0.14 Score=38.56 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.9
Q ss_pred ccceeeeee---cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 56 PLGLTLGQK---PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~~---~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|+.+... ...++||..+.+|+.|+++|++.||.|..+
T Consensus 21 ~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~v 62 (94)
T 3kzd_A 21 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEI 62 (94)
T ss_dssp CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 477766542 234799999999999999999999987554
No 125
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=93.89 E-value=0.11 Score=38.79 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=41.9
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCcee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGA 131 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~ 131 (235)
.++++|..+.+++.|+.+|++.||+|..+. |..+ ........+++. .+...+.+.+.|-
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~in---g~~v---~~~~~~~~~l~~-~~~v~l~v~R~g~ 92 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIG---EQMV---QNAEDVYEAVRT-QSQLAVQIRRGRE 92 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEET---TEEC---CSHHHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEEC---CEEC---CCHHHHHHHHhC-CCeEEEEEEECCE
Confidence 478999999999999999999999987663 3333 334444455554 3556677776553
No 126
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=93.88 E-value=0.12 Score=38.90 Aligned_cols=58 Identities=31% Similarity=0.402 Sum_probs=38.8
Q ss_pred CcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 67 GGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++||..+.+++.|+++| ++.||+|..+ -|..+-... .-..+..+....+...|.+.+
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~v---ng~~v~~~~-~~~~~~~~~~~g~~v~l~v~r 108 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEV---SGVDLQNAS-HSEAVEAIKNAGNPVVFIVQS 108 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEE---SSCBCTTCC-HHHHHHHHHTSCSSEEEEECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEE---CCEECCCCC-HHHHHHHHHcCCCeEEEEEEE
Confidence 589999999999999999 9999998655 343332111 223444555544555566655
No 127
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=93.86 E-value=0.062 Score=40.84 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=35.2
Q ss_pred EEeec---CccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceee
Q 038893 50 EVEVD---KPLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLY 93 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~ 93 (235)
+|++. .++|+.+....++.+||..+.+|+.+++.| +++||.|..
T Consensus 8 ~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~ 55 (95)
T 3gge_A 8 EVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES 55 (95)
T ss_dssp EEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEE
T ss_pred EEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEE
Confidence 45554 578887654457889999999999999999 999997643
No 128
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.74 E-value=0.092 Score=39.21 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=34.1
Q ss_pred EEEeec---Cccceeeeeec---CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVD---KPLGLTLGQKP---GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~---~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|.+. .++|+.+.-.. .|.+||..+.+++.|+++| ++.||.|..+
T Consensus 8 ~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~V 60 (103)
T 1ufx_A 8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60 (103)
T ss_dssp EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEE
T ss_pred EEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence 345554 45887664332 2556999999999999999 9999987654
No 129
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.70 E-value=0.045 Score=40.49 Aligned_cols=40 Identities=33% Similarity=0.625 Sum_probs=31.8
Q ss_pred Cccceeeee--ecCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQ--KPGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~--~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+.. .....+||..+.+++.|+++| |+.||+|+.+
T Consensus 20 ~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~i 62 (103)
T 1uep_A 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYV 62 (103)
T ss_dssp SSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEE
T ss_pred CccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEE
Confidence 347776544 234679999999999999999 9999988654
No 130
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=93.70 E-value=0.073 Score=38.58 Aligned_cols=43 Identities=33% Similarity=0.542 Sum_probs=32.5
Q ss_pred EEeec---CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 50 EVEVD---KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~---kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
++.+. ..+|+.+.. +.+++|..+.+++.|+++|++.||+|..+
T Consensus 11 ~v~l~~~~~~~G~~l~~--~~g~~V~~V~~~spA~~aGL~~GD~I~~i 56 (93)
T 2dls_A 11 CVIIQKDQHGFGFTVSG--DRIVLVQSVRPGGAAMKAGVKEGDRIIKV 56 (93)
T ss_dssp EEEEECSSSSCCEEEEC--SSSCEEEEECSSSTTTTTTCCSSCEEEEE
T ss_pred EEEEEeCCCceeEEEeC--CCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 45544 346664432 46799999999999999999999987654
No 131
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=93.68 E-value=0.14 Score=40.94 Aligned_cols=74 Identities=22% Similarity=0.378 Sum_probs=46.8
Q ss_pred Eeec---Cccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCC
Q 038893 51 VEVD---KPLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP 119 (235)
Q Consensus 51 v~~~---kplGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~ 119 (235)
+++. .++|+.+.... ++++||..+.+|+.|+++| ++.||.|..+- |..+-..... ..+.++....
T Consensus 9 v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn---g~~v~~~~~~-~~~~~~~~~g 84 (196)
T 3gsl_A 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN---EVDVREVTHS-AAVEALKEAG 84 (196)
T ss_dssp EEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECTTCCHH-HHHHHHHTSC
T ss_pred EEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC---CEECCCCCHH-HHHHHHHhCC
Confidence 5554 56887665432 4689999999999999999 99999987653 3333221111 2233444444
Q ss_pred CCceEEecC
Q 038893 120 DSVYFVVNR 128 (235)
Q Consensus 120 ~a~if~~~~ 128 (235)
+.+.+.+.+
T Consensus 85 ~~v~l~v~r 93 (196)
T 3gsl_A 85 SIVRLYVMR 93 (196)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 455566654
No 132
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=93.63 E-value=0.077 Score=39.90 Aligned_cols=72 Identities=28% Similarity=0.348 Sum_probs=46.6
Q ss_pred Cccceeeeee-cCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCce
Q 038893 55 KPLGLTLGQK-PGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~-~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g 130 (235)
+.+|+.+... ...+++|..+.+|+.|+++|++.||+|..+- |..+-+. ........++...+...+.+.+.+
T Consensus 25 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~g~~v~l~v~R~~ 97 (114)
T 2edz_A 25 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRIN---GVFVDKE-EHAQVVELVRKSGNSVTLLVLDGD 97 (114)
T ss_dssp CCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEES---SSBCSSS-CHHHHHHHHHHTCSEEEEEEECHH
T ss_pred CcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCEEEEEEEECC
Confidence 4566644332 3467999999999999999999999987653 4444221 123344455444455667776654
No 133
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=93.61 E-value=0.1 Score=38.59 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=33.0
Q ss_pred EEeecC----ccceeeeeec--------CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 50 EVEVDK----PLGLTLGQKP--------GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~k----plGl~~g~~~--------~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
+|++.| .+|+.+.... +.+++|..+.+|+.|+ +|++.||+|..+
T Consensus 10 ~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~v 65 (107)
T 2h2b_A 10 TVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMV 65 (107)
T ss_dssp EEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEE
T ss_pred EEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEE
Confidence 355543 4777665422 3489999999999999 999999988654
No 134
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.56 E-value=0.029 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=21.1
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
++.|+|.-||.+++.+ ..+-+|+ -+||.||-
T Consensus 1 ~~iY~C~rCg~~fs~~-el~~lP~-IrCpyCGy 31 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDE-QLKVLPG-VRCPYCGY 31 (48)
T ss_dssp ----CCCCTTTTCCCC-CSCCCSS-SCCTTTCC
T ss_pred CcEEEeeccCCCccHH-HHhhCCC-cccCccCc
Confidence 3579999999998774 3444666 59999975
No 135
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.54 E-value=0.072 Score=39.81 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=24.8
Q ss_pred CcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 67 GGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.++||..+.+++.|+++| |+.||+|..+
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~v 72 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEV 72 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBB
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 469999999999999999 9999987543
No 136
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=93.54 E-value=0.088 Score=40.31 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=31.6
Q ss_pred ccceeeeeec-----CCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 56 PLGLTLGQKP-----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 56 plGl~~g~~~-----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.+|+.+.... ...++|..+.+|+.|+++| ++.||+|..+-
T Consensus 42 ~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~In 87 (121)
T 2kom_A 42 GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 87 (121)
T ss_dssp CCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEET
T ss_pred cEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 4676655432 2579999999999999999 99999987653
No 137
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=93.52 E-value=0.077 Score=41.34 Aligned_cols=39 Identities=36% Similarity=0.387 Sum_probs=30.9
Q ss_pred ccceeeee--ec---CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 56 PLGLTLGQ--KP---GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~--~~---~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
++|+.+.. .. +..+||..+.+|+.|+++| ++.||.|+.+
T Consensus 49 ~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~i 93 (131)
T 1wfg_A 49 MLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93 (131)
T ss_dssp TTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred CCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 47776633 21 3489999999999999999 9999987654
No 138
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.50 E-value=0.038 Score=40.86 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=31.7
Q ss_pred Cccceeeeee-cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQK-PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~-~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++|+.+... ...++||..+.+|+.|+++|++.||+|..+
T Consensus 19 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~v 59 (106)
T 2eei_A 19 GSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEV 59 (106)
T ss_dssp SSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEE
T ss_pred CCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 4577765432 346899999999999999999999988654
No 139
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=93.48 E-value=0.14 Score=37.83 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=45.2
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
..+|+.+... ....++|..+.+|+.|+++ |++.||.|..+- |..+-.. ...+.+..+....+...|.+.+
T Consensus 21 ~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~In---g~~v~~~-~~~~~~~~l~~~~~~v~l~v~~ 93 (103)
T 2dc2_A 21 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN---GVNLRDT-KHKEAVTILSQQRGEIEFEVVY 93 (103)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEET---TEESTTS-CHHHHHHHHHHCCSEEEEEEEE
T ss_pred CccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHhCCCcEEEEEEe
Confidence 4578766543 2347999999999999996 899999886653 3333111 2223445555555566666655
No 140
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=93.46 E-value=0.37 Score=38.43 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=38.3
Q ss_pred CcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 67 GGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++||..+.+|+.|+++| ++.||+|..+- |..+=. ......+..+.+..+...|.+.+
T Consensus 130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vn---g~~v~~-~~~~~~~~~l~~~~~~v~l~v~R 188 (196)
T 3gsl_A 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVN---SVGLED-VMHEDAVAALKNTYDVVYLKVAK 188 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECSS-CBHHHHHHHHHSCCEEEEEEEEE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEEC---CCcCCC-CCHHHHHHHHHcCCCeEEEEEeC
Confidence 479999999999999999 99999886653 322211 11233445555555555666655
No 141
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.36 E-value=0.09 Score=39.86 Aligned_cols=69 Identities=25% Similarity=0.265 Sum_probs=42.7
Q ss_pred ccceeeeeec-------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEec
Q 038893 56 PLGLTLGQKP-------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVN 127 (235)
Q Consensus 56 plGl~~g~~~-------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~ 127 (235)
.+|+.+.... +..+||..+.+|+.|+++| |+.||.|..+- |..+-.. .....+..+....+...|.+.
T Consensus 31 glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vn---g~~v~~~-~~~~~~~~l~~~~~~v~l~v~ 106 (117)
T 1ujd_A 31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWN---GIPLTSK-TYEEVQSIISQQSGEAEICVR 106 (117)
T ss_dssp SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEET---TEECTTC-CHHHHHHHHSCCSSCEEEEEE
T ss_pred cccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEcCCC-CHHHHHHHHhcCCCEEEEEEE
Confidence 4677654322 2379999999999999999 99999886553 3333111 012334445444445556665
Q ss_pred C
Q 038893 128 R 128 (235)
Q Consensus 128 ~ 128 (235)
+
T Consensus 107 R 107 (117)
T 1ujd_A 107 L 107 (117)
T ss_dssp S
T ss_pred E
Confidence 5
No 142
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=93.32 E-value=0.067 Score=37.72 Aligned_cols=43 Identities=37% Similarity=0.549 Sum_probs=31.6
Q ss_pred EEeecC---ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 50 EVEVDK---PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~k---plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
+|.+.| .+|+.+.. ..+++|..+.+|+.|+++|++.||+|..+
T Consensus 5 ~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aGl~~GD~I~~i 50 (83)
T 2kv8_A 5 SVEVARGRAGYGFTLSG--QAPCVLSCVMRGSPADFVGLRAGDQILAV 50 (83)
T ss_dssp EEEECCCSSCCSCBCCC--SSSCBCCBCCTTSTTTTTTCCTTCEEEEE
T ss_pred EEEEEeCCCcccEEEEc--CCCeEEEEeCCCChHHHcCCCCCCEEEEE
Confidence 455553 34543322 34699999999999999999999988654
No 143
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=93.28 E-value=0.07 Score=41.37 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=47.3
Q ss_pred EEEeec---Cccceeeeeec-----CCcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCccccCccchhhhhhhcCC
Q 038893 49 IEVEVD---KPLGLTLGQKP-----GGGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP 119 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-----~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~ 119 (235)
.+|++. .++|+.+.... +..+||..+.+|+.|+++ |++.||.|..+- |..+-.. ...+.+..|...+
T Consensus 31 ~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vn---g~~v~~~-~~~~~~~~l~~~~ 106 (130)
T 1i16_A 31 CTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG---GTAMQGL-TRFEAWNIIKALP 106 (130)
T ss_dssp EEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECS---SCBGGGS-CHHHHHHHHHTSC
T ss_pred EEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHhCC
Confidence 446665 46888765432 346999999999999999 799999886553 3322111 1223344555554
Q ss_pred CC-ceEEecC
Q 038893 120 DS-VYFVVNR 128 (235)
Q Consensus 120 ~a-~if~~~~ 128 (235)
+. +.+.+.+
T Consensus 107 ~~~v~l~v~r 116 (130)
T 1i16_A 107 DGPVTIVIRR 116 (130)
T ss_dssp SSEEEEEEEE
T ss_pred CceEEEEEEe
Confidence 44 4555554
No 144
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=93.28 E-value=0.054 Score=41.95 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=35.5
Q ss_pred EEEeec----Cccceeeeeec------CCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 49 IEVEVD----KPLGLTLGQKP------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~----kplGl~~g~~~------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.++.+. ..+|+.+.... +..+||..+.+|+.|+++| ++.||+|+.+-
T Consensus 27 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vn 84 (127)
T 1wg6_A 27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVN 84 (127)
T ss_dssp EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEET
T ss_pred EEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 446654 34887665432 2479999999999999999 99999886553
No 145
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=93.23 E-value=0.074 Score=39.01 Aligned_cols=29 Identities=38% Similarity=0.664 Sum_probs=25.8
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
..++||..+.+++.|+++|++.||+|..+
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~i 72 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQV 72 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEE
Confidence 45799999999999999999999987654
No 146
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=93.22 E-value=0.1 Score=39.64 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.9
Q ss_pred cceeeeeec--CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 57 LGLTLGQKP--GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 57 lGl~~g~~~--~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
+|+.+.... .+.++|..+.+|+.|+++| ++.||+|..+
T Consensus 38 lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~I 78 (114)
T 2gzv_A 38 IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78 (114)
T ss_dssp CSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence 787665432 3479999999999999999 9999988655
No 147
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=93.19 E-value=0.094 Score=40.04 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++|+.+ .....++|..+.+|+.|+++|++.||+|+.+
T Consensus 34 ~~~G~~l--~~~~~v~V~~V~~gspA~~AGL~~GD~Il~V 71 (109)
T 2vsv_A 34 GDLGFTL--RGNAPVQVHFLDPYCSASVAGAREGDYIVSI 71 (109)
T ss_dssp GCCCEEE--ESSSSCEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CceeEEE--eCCCCeEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 4466544 2345689999999999999999999988665
No 148
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=93.19 E-value=0.094 Score=39.65 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=33.9
Q ss_pred EEeecC----ccceeeeee--cCCcEEEEEeecchHHHHh--cCCcCcceeee
Q 038893 50 EVEVDK----PLGLTLGQK--PGGGVVITAVEGGGNAAKA--GLKSGDQVLYT 94 (235)
Q Consensus 50 ~v~~~k----plGl~~g~~--~~~~vyIa~~isG~~a~~~--Gi~~gD~i~~~ 94 (235)
+|.+.| ++|+.+... ....+||..+.+|+.|+++ ||+.||+|+.+
T Consensus 18 ~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~i 70 (119)
T 2cs5_A 18 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70 (119)
T ss_dssp EEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEE
T ss_pred EEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEE
Confidence 455543 477765443 2346999999999999999 89999988654
No 149
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=93.18 E-value=0.099 Score=40.38 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=31.8
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
..+|+.+... ....++|..+.+|+.|+++| |+.||+|+.+
T Consensus 29 ~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~v 71 (129)
T 2kpk_A 29 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71 (129)
T ss_dssp SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEE
T ss_pred CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 3577765443 24469999999999999999 9999988655
No 150
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=93.14 E-value=0.23 Score=40.71 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=41.9
Q ss_pred HHHHhCCeeEEEEeec---Cccceeeee---e-----cCCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 39 TARTAGASKTIEVEVD---KPLGLTLGQ---K-----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 39 lA~~lg~~~~~~v~~~---kplGl~~g~---~-----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
+.+........+|++. ..+|+.+.. . .+.++||..+.+|+.|+++| |+.||+|+.+-
T Consensus 72 ~e~~~~~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VN 140 (170)
T 3egg_C 72 LEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140 (170)
T ss_dssp HHHHHTTSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cccccCCceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 3344555555677765 468876654 1 24679999999999999999 99999886653
No 151
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.11 E-value=0.17 Score=38.87 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=43.8
Q ss_pred ccceeeeee-----cCCcEEEEEeec--chHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 56 PLGLTLGQK-----PGGGVVITAVEG--GGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~-----~~~~vyIa~~is--G~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
++|+.+..+ ...+++|..+.+ ++.|+++|++.||+|..+- |..+-.. .+..+..+|........+.+.|
T Consensus 28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vn---g~~v~~~-~~~dl~~~l~~~g~~v~l~v~R 103 (118)
T 2yub_A 28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEIN---GTPVRTL-RVEEVEDAIKQTSQTLQLLIEH 103 (118)
T ss_dssp SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEES---SSBTTTS-CHHHHHHHHHCCSSCEEEEEEE
T ss_pred CceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEEC---CEECCCc-CHHHHHHHHHhCCCEEEEEEEE
Confidence 346555433 236899999999 9999999999999987664 3333222 0134444555443344566655
Q ss_pred ce
Q 038893 129 GG 130 (235)
Q Consensus 129 ~g 130 (235)
.+
T Consensus 104 ~g 105 (118)
T 2yub_A 104 DP 105 (118)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 152
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=93.11 E-value=0.12 Score=47.79 Aligned_cols=42 Identities=33% Similarity=0.518 Sum_probs=35.8
Q ss_pred cCccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 54 DKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 54 ~kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..++|+.+....+.+++|..+.+|+.|+++||+.||.|..+-
T Consensus 18 ~~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~Vn 59 (391)
T 3tsz_A 18 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 59 (391)
T ss_dssp CSSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEET
T ss_pred CCceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 357888766556789999999999999999999999987654
No 153
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=92.92 E-value=0.12 Score=37.78 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=30.3
Q ss_pred eEEEEeecC----ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 47 KTIEVEVDK----PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 47 ~~~~v~~~k----plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
...++++.| ++|+.+ .++ +|....+|+.|+++|++.||.|..+
T Consensus 4 ~~r~v~l~k~~~g~~Gf~i----~~g-~I~~v~~gspA~~aGl~~GD~Il~V 50 (82)
T 1r6j_A 4 DPRTITMHKDSTGHVGFIF----KNG-KITSIVKDSSAARNGLLTEHNICEI 50 (82)
T ss_dssp CCEEEEEECCTTSCCCEEE----ETT-EEEEECTTSHHHHHTCCSSEEEEEE
T ss_pred ceEEEEEEECCCCCeEEEE----ECC-EEEEecCCCHHHHcCCCCCCEEEEE
Confidence 334566643 355543 233 4899999999999999999977543
No 154
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=92.89 E-value=0.18 Score=38.30 Aligned_cols=41 Identities=37% Similarity=0.614 Sum_probs=31.6
Q ss_pred cCccceeeeee---cCCcEEEEEeecchHHHHh-cCCcCcceeee
Q 038893 54 DKPLGLTLGQK---PGGGVVITAVEGGGNAAKA-GLKSGDQVLYT 94 (235)
Q Consensus 54 ~kplGl~~g~~---~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~ 94 (235)
...+|+.+... ..+.++|..+.+|+.|+++ |++.||.|..+
T Consensus 27 ~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~I 71 (118)
T 1v6b_A 27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71 (118)
T ss_dssp CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEE
T ss_pred CCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 35677765432 2355999999999999999 79999988654
No 155
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=92.81 E-value=0.094 Score=39.26 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=33.1
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.++|+.+... ...+++|..+.+++.|+.+|++.||+|..+-
T Consensus 27 ~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vn 69 (114)
T 1x5n_A 27 RGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVN 69 (114)
T ss_dssp CCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEET
T ss_pred CceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 5577766542 3468999999999999999999999987653
No 156
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=92.81 E-value=0.09 Score=38.83 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.4
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.|.+||..+.+++.|+++|++.||+|..+
T Consensus 42 ~p~~~V~~v~~~spA~~aGl~~GD~I~~i 70 (107)
T 3qe1_A 42 APLQHVSAVLPGGAADRAGVRKGDRILEV 70 (107)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCEEEEE
T ss_pred CCceEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 45568999999999999999999988665
No 157
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=92.79 E-value=0.22 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=38.7
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCC--CCceEEecCce
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP--DSVYFVVNRGG 130 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~--~a~if~~~~~g 130 (235)
.-+|..+.+++.|+.+|++.||+|..+- |..+- .......++.... ....+.+.|.|
T Consensus 3 ~p~V~~V~~~spA~~aGl~~GD~I~~in---g~~v~---~~~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 3 RPVVGEIAANSIAAEAQIAPGTELKAVD---GIETP---DWDAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp CCBEEEECTTSHHHHTTCCTTCEEEEET---TEECS---SHHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred CCEEEeeCCCCHHHHcCCCCCCEEEEEC---CEECC---CHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 4578899999999999999999987663 33333 3334445554433 35667777755
No 158
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=92.77 E-value=0.098 Score=40.14 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=45.0
Q ss_pred ccceeeeeec-----CCcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCc
Q 038893 56 PLGLTLGQKP-----GGGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRG 129 (235)
Q Consensus 56 plGl~~g~~~-----~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~ 129 (235)
++|+.+.... +..+||..+.+|+.|+++ ||+.||+|+.+ -|..+-.. ..-..+..+....+...|.+.+.
T Consensus 37 ~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~V---nG~~v~~~-~~~~~~~~l~~~~~~v~l~v~r~ 112 (120)
T 2iwo_A 37 SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI---CGTSTEGM-THTQAVNLLKNASGSIEMQVVAG 112 (120)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEE---TTEECTTC-BHHHHHHHHHHCCSEEEEEEECC
T ss_pred CCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEE---CCEECCCC-CHHHHHHHHHcCCCeEEEEEEEC
Confidence 6777655432 347999999999999999 89999988654 33333111 12233445555555566666653
No 159
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=92.67 E-value=0.22 Score=40.65 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=44.9
Q ss_pred ccceeeeeec------CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 56 PLGLTLGQKP------GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~~------~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
++|+.+.... ..+++|..+.+|+.|+++| ++.||+|..+- |..+- .........+++...+...+.+.+
T Consensus 118 ~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~in---g~~v~-~~~~~~~~~~l~~~~~~v~l~v~R 193 (200)
T 2qt5_A 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD---GIRLL-GTTHAEAMSILKQCGQEATLLIEY 193 (200)
T ss_dssp BCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECT-TCCHHHHHHHHHTTCSEEEEEEEE
T ss_pred CeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC---CEECC-CCCHHHHHHHHHcCCCeEEEEEEE
Confidence 3666544322 3479999999999999999 99999987653 32222 003334455565544455566666
Q ss_pred ce
Q 038893 129 GG 130 (235)
Q Consensus 129 ~g 130 (235)
.+
T Consensus 194 ~~ 195 (200)
T 2qt5_A 194 DV 195 (200)
T ss_dssp EE
T ss_pred CC
Confidence 44
No 160
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=92.45 E-value=0.15 Score=38.95 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=47.2
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcC-CcCcceeeeccccCCCccccCccchhhhhhhcCC-CCceEEecCce
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGL-KSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP-DSVYFVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi-~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~-~a~if~~~~~g 130 (235)
..+|+.+.... ...++|..+.+|+.|+++|+ +.||+|..+- |..+-.. ........++..+ ....+.+.+.+
T Consensus 20 ~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g 94 (127)
T 1b8q_A 20 GGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN---DRPLVDL-SYDSALEVLRGIASETHVVLILRGP 94 (127)
T ss_dssp SCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEET---TEECSSS-CHHHHHHHHHSCCSSCEEEEEECCC
T ss_pred CcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 35777655443 35899999999999999997 9999987653 3333220 1334445555544 45667777755
No 161
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=92.21 E-value=0.073 Score=38.90 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=31.9
Q ss_pred ccceeeeeec--CCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 56 PLGLTLGQKP--GGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 56 plGl~~g~~~--~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.+|+.+.... ...++|..+.+|+.|+++| |+.||+|..+-
T Consensus 23 g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vn 65 (103)
T 1wfv_A 23 GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN 65 (103)
T ss_dssp SSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEET
T ss_pred cCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 4777665443 3479999999999999999 99999886553
No 162
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=92.18 E-value=0.13 Score=37.51 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=27.3
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++|+.+. .+ +|..+.+|+.|+++|++.||+|..+
T Consensus 24 ~~lG~~~~---~G--~V~~V~~~spA~~aGL~~GD~Il~I 58 (90)
T 1y7n_A 24 YQLGFSVQ---NG--IICSLMRGGIAERGGVRVGHRIIEI 58 (90)
T ss_dssp SCCCEEEE---TT--EEEEECTTSHHHHHTCCSSCEEEEE
T ss_pred cccCeEec---CC--EEEEECCCCHHHHcCCCCCCEEEEE
Confidence 34666442 23 9999999999999999999987644
No 163
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=92.14 E-value=0.18 Score=37.18 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.3
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHhc--CCcCcceeee
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKAG--LKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~G--i~~gD~i~~~ 94 (235)
.++|+.+... ....+||..+.+|+.|+++| |+.||+|..+
T Consensus 29 ~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~i 72 (107)
T 3nfk_A 29 GRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72 (107)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEE
T ss_pred CCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEE
Confidence 3677755332 24569999999999999999 9999987654
No 164
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.11 E-value=0.16 Score=39.40 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=28.7
Q ss_pred ceEEcCCCceEEeCC----------C-------------CCCCCCC-CCCCCCCCCCccCeeecc
Q 038893 159 ATHICLDCGYIYFLQ----------K-------------PFDELPD-TYVCPQCQAPKKRFARYD 199 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~----------t-------------pfe~lpe-d~~CP~C~a~k~~F~~~~ 199 (235)
..|.|+.|||++..+ + .+..+|. +..||.|++.+..|....
T Consensus 25 ~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a~~~q~q 89 (113)
T 3h0g_I 25 LRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTH 89 (113)
T ss_dssp CCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCEEEECCC
T ss_pred eEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCceEEEEEEe
Confidence 479999999988653 0 1222332 368999999988887653
No 165
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=92.03 E-value=0.25 Score=37.43 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=41.6
Q ss_pred CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCcc--ccCccchhhhhhhcCCCC-ceEEecC
Q 038893 55 KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELW--PADKLGFTKTAIQAKPDS-VYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW--~~~~~g~~i~AIn~~~~a-~if~~~~ 128 (235)
.++|+.+ .....++|..+.+++.|+++||+.||+|+.+- |..+- +.+ ++...|+...+. ..|.+.+
T Consensus 26 ~~~G~~l--~~~~~v~V~~V~~~spA~~aGL~~GD~Il~In---G~~v~~~~~~---d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 26 GDLGFTL--RGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQ---GVDCKWLTVS---EVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SCCSCCE--ESSSSCEECCCCTTSSHHHHHCCTTCEEEEET---TEECSSCCHH---HHHHHHHHTTTSEECEEEEC
T ss_pred CcccEEE--eCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC---CEECCCCCHH---HHHHHHHhCCCceEEEEEEe
Confidence 4566544 22356899999999999999999999987653 33332 333 334445544443 4555544
No 166
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=91.79 E-value=0.27 Score=46.84 Aligned_cols=42 Identities=33% Similarity=0.518 Sum_probs=35.1
Q ss_pred cCccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 54 DKPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 54 ~kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..++|+.+......++||..+.+|+.|+++||+.||+|..+-
T Consensus 10 ~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VN 51 (468)
T 3shw_A 10 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 51 (468)
T ss_dssp CSSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEET
T ss_pred CCccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 367888664445678999999999999999999999987653
No 167
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.73 E-value=0.12 Score=39.72 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=30.3
Q ss_pred ccceeeee-ecC--CcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 56 PLGLTLGQ-KPG--GGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 56 plGl~~g~-~~~--~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
++|+.+.. +.. .+++|..+.+++.|+++||+.||+|..+
T Consensus 30 ~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~I 71 (114)
T 2d8i_A 30 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEI 71 (114)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEE
T ss_pred ccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 46765543 222 4799999999999999999999987554
No 168
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=91.62 E-value=0.28 Score=36.51 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=39.6
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCce
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGG 130 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g 130 (235)
..+++|..+.+++.|+.+|++.||+|..+. |..+.+ ......++.. .+...+.+.+.|
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~in---g~~v~~---~~~~~~~l~~-g~~v~l~v~R~g 91 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVN---GRPLVD---SSELQEAVLT-ESPLLLEVRRGN 91 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEET---TEECCS---HHHHHHHHHH-CSSEEEEEEETT
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEEC---CEECCC---HHHHHHHHhC-CCeEEEEEEECC
Confidence 467999999999999999999999987653 333333 3333444432 344566666655
No 169
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=91.54 E-value=0.24 Score=46.08 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=50.1
Q ss_pred CcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCceeeeeccccC
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGADVDVKRLP 139 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~~~d~~~~p 139 (235)
.+++|..+.+|+.|+++|++.||+|..+- | .+.+.+.....+++..++...|.+.|.|-...+...|
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vn---g---~~v~~~~~~~~~l~~~~~~v~l~v~R~g~~~~~~~~~ 429 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVN---R---DRVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMRL 429 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEEC---C---EECCCHHHHHHHHHhCCCeEEEEEEECCEEEEEEEEe
Confidence 37999999999999999999999987763 2 3344555666777777777788888877555555443
No 170
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=91.45 E-value=0.14 Score=36.97 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=21.7
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
...|+|..||...+.. ..+.-+||.|++
T Consensus 26 ~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeC-----CCCCccCCCCCc
Confidence 3579999999998763 234458999988
No 171
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=91.39 E-value=0.067 Score=39.39 Aligned_cols=38 Identities=37% Similarity=0.526 Sum_probs=30.0
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.+|+.+.. ...++|..+.+++.|+++||+.||+|+.+-
T Consensus 27 g~G~~~~~--~~~~~V~~V~~~spA~~aGL~~GD~I~~vn 64 (100)
T 1whd_A 27 GFGFTICC--DSPVRVQAVDSGGPAERAGLQQLDTVLQLN 64 (100)
T ss_dssp SSSCBCCC--SSSCBCCBCCTTSHHHHHTCCSSCEEEEET
T ss_pred eeeEEEeC--CCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 36654433 366999999999999999999999886653
No 172
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=91.35 E-value=0.16 Score=38.08 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=43.4
Q ss_pred Cccceeeeeec---------CCcEEEEEeecchHHHH-hcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceE
Q 038893 55 KPLGLTLGQKP---------GGGVVITAVEGGGNAAK-AGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYF 124 (235)
Q Consensus 55 kplGl~~g~~~---------~~~vyIa~~isG~~a~~-~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if 124 (235)
.++|+.+.... .-.++|..+.+|+.|++ +||+.||+|..+- |..+... ........++.......|
T Consensus 22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~in---g~~v~~~-~~~~~~~~l~~~g~~v~l 97 (114)
T 1uew_A 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVN---GQSIINM-PHADIVKLIKDAGLSVTL 97 (114)
T ss_dssp SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEET---TBCTTTS-CHHHHHHHHHHTTTEEEE
T ss_pred CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCeEEE
Confidence 35787664321 11569999999999999 9999999987653 4444331 022344445543344455
Q ss_pred EecC
Q 038893 125 VVNR 128 (235)
Q Consensus 125 ~~~~ 128 (235)
.+.+
T Consensus 98 ~v~r 101 (114)
T 1uew_A 98 RIIP 101 (114)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5555
No 173
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=91.05 E-value=0.14 Score=37.56 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=31.0
Q ss_pred Cccceeeeee----------cCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 55 KPLGLTLGQK----------PGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 55 kplGl~~g~~----------~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++|+.+... .+.+++|..+.+++.|++ |++.||+|..+
T Consensus 21 ~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~v 69 (103)
T 1n7t_A 21 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQA 69 (103)
T ss_dssp SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEE
T ss_pred CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEE
Confidence 4577765442 345899999999999999 99999987654
No 174
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=90.96 E-value=0.39 Score=39.14 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=35.1
Q ss_pred EEEeecC----ccceeeeee------cCCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVDK----PLGLTLGQK------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k----plGl~~g~~------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|.+.| .+|+.+... ...+++|..+.+|+.|+++| ++.||+|..+
T Consensus 8 ~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~v 64 (196)
T 1p1d_A 8 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64 (196)
T ss_dssp EEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEE
T ss_pred EEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 4455543 477765553 24579999999999999999 9999998765
No 175
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=90.84 E-value=0.52 Score=38.28 Aligned_cols=71 Identities=25% Similarity=0.277 Sum_probs=46.4
Q ss_pred Cccceeeeee----cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCC-ceEEe
Q 038893 55 KPLGLTLGQK----PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDS-VYFVV 126 (235)
Q Consensus 55 kplGl~~g~~----~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a-~if~~ 126 (235)
..+|+.+... ...++||..+.+|+.|+++| ++.||+|..+. |..+ |+.... ..+.++....+. ..|.+
T Consensus 29 ~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vn---g~~v~~~~~~~~-~~~~~~~~~~~~~v~l~v 104 (206)
T 3r0h_A 29 KPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDIN---GTPIHVGSMTTL-KVHQLFHTTYEKAVTLTV 104 (206)
T ss_dssp SCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEET---TEECCGGGSCHH-HHHHHHHSCCSSEEEEEE
T ss_pred CCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC---CEEcCCCccCHH-HHHHHHHhcCCCceEEEE
Confidence 5678766432 12579999999999999999 99999987763 3333 223222 334555555555 56666
Q ss_pred cCc
Q 038893 127 NRG 129 (235)
Q Consensus 127 ~~~ 129 (235)
.+.
T Consensus 105 ~R~ 107 (206)
T 3r0h_A 105 FRA 107 (206)
T ss_dssp ECC
T ss_pred Eec
Confidence 653
No 176
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=90.75 E-value=0.085 Score=39.18 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=35.0
Q ss_pred EEEeec---Cccceeeeeec-CCcEEEEEeecchHHHHhc-CCcCcceeee
Q 038893 49 IEVEVD---KPLGLTLGQKP-GGGVVITAVEGGGNAAKAG-LKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-~~~vyIa~~isG~~a~~~G-i~~gD~i~~~ 94 (235)
.+|.+. .++|+.+.... ...++|..+.+++.|+++| |+.||+|..+
T Consensus 17 ~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~V 67 (113)
T 1um7_A 17 RKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSV 67 (113)
T ss_dssp EEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEE
T ss_pred EEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 345554 35777654433 4789999999999999999 9999988654
No 177
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=90.72 E-value=0.35 Score=34.29 Aligned_cols=44 Identities=30% Similarity=0.564 Sum_probs=29.7
Q ss_pred EEEeec---Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVD---KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.++++. ..+|+.+.... ...++|... +++.|+ +|++.||+|..+
T Consensus 5 ~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~v 52 (88)
T 3bpu_A 5 ITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEV 52 (88)
T ss_dssp EEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEE
T ss_pred EEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEE
Confidence 445554 34777665543 357888875 999999 999999988655
No 178
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=90.71 E-value=0.37 Score=38.88 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=42.1
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
+.++||..+.+|+.|++ |++.||+|..+ -|..+-... .-..+.++....+.+.|.+.|
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~v---ng~~v~~~~-~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQA---NGYSFINIE-HGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEE---TTEECTTCC-HHHHHHHHHHCCSEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEE---CCEECCCCC-HHHHHHHHHcCCCeEEEEEEE
Confidence 56899999999999999 99999998765 344332222 224455666666677888877
No 179
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=90.50 E-value=0.5 Score=34.68 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcC-C-CCceEEecCce
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK-P-DSVYFVVNRGG 130 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~-~-~a~if~~~~~g 130 (235)
..+++|..+.+++.|+. |++.||+|+.+ -|..+ ........++... + ....+.+.|.|
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~I---ng~~v---~~~~dl~~~l~~~~~g~~v~l~v~R~g 65 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEI---DGNAF---KSSQEFIDYIHSKKVGDTVKINYKHGD 65 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEE---TTBCC---SSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEE---CCEEC---CCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 46899999999999995 99999998765 33333 3333445555542 2 34566666655
No 180
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=90.33 E-value=0.23 Score=37.39 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=43.1
Q ss_pred Cccceeeeeec--------CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEe
Q 038893 55 KPLGLTLGQKP--------GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVV 126 (235)
Q Consensus 55 kplGl~~g~~~--------~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~ 126 (235)
..+|+.+.... +.++||..+.+|+.|+ +|++.||+|..+- |..+=... .-..+.++....+...|.+
T Consensus 26 ~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vn---g~~v~~~~-~~~~~~~l~~~~~~v~l~v 100 (117)
T 2csj_A 26 RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVN---GTPMEDVL-HSFAVQQLRKSGKIAAIVV 100 (117)
T ss_dssp STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEES---SCBCBTCC-HHHHHHHHHHSCSEEEEEE
T ss_pred CccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEEC---CEECCCcC-HHHHHHHHhcCCCeEEEEE
Confidence 45777654421 3469999999999997 8999999886553 43331111 1123444554445566666
Q ss_pred cC
Q 038893 127 NR 128 (235)
Q Consensus 127 ~~ 128 (235)
.+
T Consensus 101 ~R 102 (117)
T 2csj_A 101 KR 102 (117)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 181
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=90.05 E-value=0.53 Score=45.85 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=47.3
Q ss_pred cceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCceeeee
Q 038893 57 LGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGGADVD 134 (235)
Q Consensus 57 lGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g~~~d 134 (235)
+|+.+... .++++|..+.+|+.|+++||+.||+|+.+- |..+ +.+++- .+|+. .+ +.+.+.+.|.|-...
T Consensus 487 lG~~~~~~-~~gv~V~~V~~~spA~~AGL~~GD~I~aIn---G~~v-~~~~l~---~~l~~~~~g~~v~l~v~R~g~~~~ 558 (597)
T 4fgm_A 487 FGAKYKAS-PQGLDVLNVYHDESAYHAGLSAGDKIIAID---HLQA-TEQSVK---RILERYIPGDTVTIHAFRRDELMT 558 (597)
T ss_dssp CSEEEEEE-TTEEEEEEECTTSHHHHHTCCTTCEEEEET---TEEC-CTTTHH---HHHTTCCTTCEEEEEEEETTEEEE
T ss_pred cceEEecc-CCeEEEEEeCCCChHHHCCCCCCCEEEEEC---CEEC-CHHHHH---HHHHhcCCCCEEEEEEEECCEEEE
Confidence 77766544 457999999999999999999999997763 4444 334443 33432 23 455677777664433
No 182
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.58 E-value=0.15 Score=39.10 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=25.3
Q ss_pred CcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
..++|..+.+|+.|+++||+.||+|+.+
T Consensus 61 ~gv~V~~V~~~spA~~aGL~~GD~I~~i 88 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKV 88 (126)
T ss_dssp CCCCBCCCCSSSHHHHHTCCSSCCCCEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEE
Confidence 5699999999999999999999988655
No 183
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=89.53 E-value=0.35 Score=39.35 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=42.5
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.+|+.+.. ...++||..+.+|+.|+++| ++.||+|..+- |..+ |+++ .....++...+...|.+.|
T Consensus 126 ~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN---g~~v~~~~~~---~~~~~l~~~~~~v~L~V~R 194 (206)
T 3r0h_A 126 ELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN---GDALEGLPFQ---VCYALFKGANGKVSMEVTR 194 (206)
T ss_dssp CCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEET---TEECTTCCHH---HHHHHHHTCCSEEEEEEEE
T ss_pred ccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEEC---CEECCCCCHH---HHHHHHHcCCCeEEEEEEe
Confidence 35654432 24679999999999999999 99999886653 3222 2222 3344455555555666555
No 184
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=89.46 E-value=0.44 Score=37.11 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.6
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcC-CC-CceEEecCcee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK-PD-SVYFVVNRGGA 131 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~-~~-a~if~~~~~g~ 131 (235)
..+++|..+.+|+.|+ +|++.||+|+.+. |..+ ++......++... ++ ...+.+.|.|-
T Consensus 56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~in---G~~v---~~~~~l~~~l~~~~~g~~v~l~v~R~g~ 116 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVD---DKEI---ASSTDLQSALYNHSIGDTIKITYYRNGK 116 (134)
T ss_dssp CSCEEEEECSTTSGGG-TTSCSSCEEEEET---TEEC---CCHHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred CCCEEEEEECCCCchH-HCCCCCCEEEEEC---CEEc---CCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4679999999999999 9999999987653 3333 2233444455543 33 45666666553
No 185
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=89.37 E-value=0.55 Score=38.23 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 66 GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
..++||..+.+|+.|+++| ++.||+|..+- |..+-+ ........++++..+...+.+.+
T Consensus 134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vn---g~~v~~-~~~~~~~~~l~~~~~~v~l~v~R 193 (196)
T 1p1d_A 134 GDPLVISDIKKGSVAHRTGTLELGDKLLAID---NIRLDS-CSMEDAVQILQQCEDLVKLKIRK 193 (196)
T ss_dssp TCCCEEEECCSSSHHHHTSCCCTTCEEEEET---TEEGGG-CCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCEEEEEECCCCcHHhcCCCCCCCEEEEEC---CEECCC-CCHHHHHHHHHhCCCEEEEEEEe
Confidence 4579999999999999999 99999886652 222211 00333444555444444555544
No 186
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=88.96 E-value=0.069 Score=40.65 Aligned_cols=36 Identities=28% Similarity=0.558 Sum_probs=27.2
Q ss_pred ccceeeeee--cCCcEEEEEeecchHHHH-hcCCcCcce
Q 038893 56 PLGLTLGQK--PGGGVVITAVEGGGNAAK-AGLKSGDQV 91 (235)
Q Consensus 56 plGl~~g~~--~~~~vyIa~~isG~~a~~-~Gi~~gD~i 91 (235)
++|+.+... ...+++|..+.+|+.|++ +|++.||+|
T Consensus 40 glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~I 78 (112)
T 2lob_A 40 GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 78 (112)
Confidence 456544332 234799999999999999 899999854
No 187
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=89.34 E-value=0.3 Score=34.94 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=34.7
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc--CCCCceEEecCce
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA--KPDSVYFVVNRGG 130 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~--~~~a~if~~~~~g 130 (235)
+++|..+.+++.|+++|++.||+|..+ -|..+-+.+++ ..+++. ..+...+.+.|.|
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~i---ng~~v~~~~d~---~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVAL---NGLDLTDPNVM---NTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEE---TTEETTCHHHH---HHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEE---CCEECCCHHHH---HHHHHhcCCCCEEEEEEEECC
Confidence 567788888888899999999988655 34444333333 333332 1234455555544
No 188
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=89.21 E-value=0.15 Score=37.46 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.3
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcC-C-CCceEEecCceee
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK-P-DSVYFVVNRGGAD 132 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~-~-~a~if~~~~~g~~ 132 (235)
+++|..+.+|+.|+. |++.||+|..+. |..+- .......+++.. + ....+.+.|.|-.
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~In---G~~v~---~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISAD---GKNYQ---SAEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEET---TBCCS---SHHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEEC---CEECC---CHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 467888899999999 999999987653 44332 233455566654 3 3467777776643
No 189
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=89.16 E-value=0.16 Score=39.93 Aligned_cols=68 Identities=24% Similarity=0.195 Sum_probs=42.8
Q ss_pred ccceeeeeecCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcC-CC-CceEEecC
Q 038893 56 PLGLTLGQKPGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK-PD-SVYFVVNR 128 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~-~~-a~if~~~~ 128 (235)
-+|+.+.. .++.++|..+.+|+.|+++| ++.||+|+.+ -|..+-. .........|... ++ .+.|.+.|
T Consensus 39 glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~V---nG~~v~~-~s~~d~~~~l~~~~~G~~v~l~V~R 109 (126)
T 1wif_A 39 GLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISV---GHANVLG-YTLREFLKLLQNITIGTVLQIKAYR 109 (126)
T ss_dssp CCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEE---SSSCCTT-CCHHHHHHHHTSCCSSCEEEEEEES
T ss_pred eEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEE---CCEEcCC-CCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 35554332 36779999999999999999 9999998765 3444410 1223344455542 23 45566665
No 190
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=88.77 E-value=0.55 Score=36.79 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=29.1
Q ss_pred cceEEcCCCceEEeCCC-----------------------CCCCCCC-CCCCCCCCCCccCeeecc
Q 038893 158 RATHICLDCGYIYFLQK-----------------------PFDELPD-TYVCPQCQAPKKRFARYD 199 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t-----------------------pfe~lpe-d~~CP~C~a~k~~F~~~~ 199 (235)
...|.|+.|||.+.... .+..+|. +..||.|++.+..|....
T Consensus 24 ~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a~~~q~q 89 (122)
T 1twf_I 24 RLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQ 89 (122)
T ss_dssp EEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCEEEEECS
T ss_pred CCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCEEEEEEec
Confidence 34799999999887430 0122332 468999999988888653
No 191
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=88.74 E-value=0.31 Score=34.68 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=38.6
Q ss_pred EEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCC-CCceEEecCceee
Q 038893 69 VVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP-DSVYFVVNRGGAD 132 (235)
Q Consensus 69 vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~-~a~if~~~~~g~~ 132 (235)
++|..+.+++.|+.+|++.||+|..+- |..+ ........++...+ ....+.+.|.|..
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~in---g~~v---~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 64 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVD---GQPL---TQWVTFVMLVRDNPGXSLALEIERQGSP 64 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEET---TEEC---CCHHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEEC---CeEc---CCHHHHHHHHhcCCCCeEEEEEEECCeE
Confidence 567788899999999999999987663 3333 33344455555444 3456777765633
No 192
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=88.74 E-value=0.39 Score=39.07 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=43.7
Q ss_pred Cccceeeeee--cCCcEEEEEeecchHHHHh-cCCcCcceeeeccccCCCc--cccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQK--PGGGVVITAVEGGGNAAKA-GLKSGDQVLYTSSFFGDEL--WPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~--~~~~vyIa~~isG~~a~~~-Gi~~gD~i~~~s~~fG~~l--W~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++|+.+... ...++||..+.+|+.|+++ ||+.||+|..+- |..+ |++.++ ...+..-.+...|.+.+
T Consensus 19 ~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vn---g~~v~~~~~~~~---~~~~~~~g~~v~l~v~R 91 (200)
T 2qt5_A 19 TTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN---GINLAKFRHDEI---ISLLKNVGERVVLEVEY 91 (200)
T ss_dssp CCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEET---TEECTTSCHHHH---HHHHHTCCSEEEEEEEE
T ss_pred CCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC---CEECCCCCHHHH---HHHHHhCCCeEEEEEec
Confidence 4577765443 3457999999999999999 899999987653 3332 333332 33443333445566654
No 193
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=88.03 E-value=4.7 Score=33.30 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=38.5
Q ss_pred CcEEEEEeecchHHHHhcCCc-CcceeeeccccCCCccccCccchhhhhhhcCCC-CceEEecC
Q 038893 67 GGVVITAVEGGGNAAKAGLKS-GDQVLYTSSFFGDELWPADKLGFTKTAIQAKPD-SVYFVVNR 128 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~-gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~-a~if~~~~ 128 (235)
.+++|..+.+++.|+++|++. ||+|..+- |. +-+.+++ ..+++..++ ...|.+.+
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~in---g~-v~~~~~l---~~~l~~~~g~~v~l~v~r 168 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGAD---TV-MNESEDL---FSLIETHEAKPLKLYVYN 168 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEES---SC-CCSSSCH---HHHHHHTTTSCEEEEEEE
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECC---CE-eCCHHHH---HHHHHhCCCCeEEEEEEE
Confidence 689999999999999999999 99998773 32 4444444 444544433 34455544
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=87.95 E-value=0.61 Score=43.65 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=43.0
Q ss_pred CcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCce
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGG 130 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g 130 (235)
.+++|..+.+|+.|+++|++.||+|..+- | .+.+.......+++...+...+.+.|.|
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vn---g---~~v~~~~~~~~~l~~~~~~v~l~v~R~g 443 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISAN---K---KPVTDVKSLQTIAQEKKKELLVQVLRGP 443 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEET---T---EECCSHHHHHHHTTSSCSCEEEEEEETT
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEEC---C---EECCCHHHHHHHHhcCCCeEEEEEEECC
Confidence 47899999999999999999999987763 2 3344455556666665666667776655
No 195
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.48 E-value=0.25 Score=36.06 Aligned_cols=43 Identities=33% Similarity=0.498 Sum_probs=31.5
Q ss_pred EEEeecC-----ccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeee
Q 038893 49 IEVEVDK-----PLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 49 ~~v~~~k-----plGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
.+|++.| ++|+.+. ....++|..+.+|+.|+ +|++.||+|..+
T Consensus 10 ~~v~l~~~~~~~~~G~~l~--~~~~~~V~~V~~~spA~-agL~~GD~Il~i 57 (96)
T 2edv_A 10 HTVKIDKDTLLQDYGFHIS--ESLPLTVVAVTAGGSAH-GKLFPGDQILQM 57 (96)
T ss_dssp EEEEECCCSSSCSCSBCCC--SSSSCBCCCBCSSSSST-TTSCTTCBEEEE
T ss_pred EEEEEEECCCCCcccEEEe--cCCCeEEEEECCCCchh-hCCCCCCEEEEE
Confidence 4566653 3555432 25689999999999996 999999988654
No 196
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=87.40 E-value=0.39 Score=40.92 Aligned_cols=72 Identities=25% Similarity=0.351 Sum_probs=45.0
Q ss_pred Cccceeeeeec-CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCc-eEEecCce
Q 038893 55 KPLGLTLGQKP-GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSV-YFVVNRGG 130 (235)
Q Consensus 55 kplGl~~g~~~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~-if~~~~~g 130 (235)
..+|+.+.... .++++|..+.+|+.|+.+||+.||+|+.+- |..+- ...+..++..|+...... .+.+.+.|
T Consensus 20 ~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VN---G~~V~-~~s~~dl~~~l~~~g~~v~~l~V~R~g 93 (216)
T 2krg_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVN---GVCME-GKQHGDVVSAIRAGGDETKLLVVDRET 93 (216)
T ss_dssp SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEET---TEECT-TCCTHHHHHHHHHHCSEEEEEECCHHH
T ss_pred CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEEC---CEECC-CCCHHHHHHHHHhcCCeEEEEEEEECC
Confidence 34777654432 358999999999999999999999987653 33332 002333344444433344 56665544
No 197
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=87.23 E-value=1 Score=33.31 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=35.8
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCce
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGG 130 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g 130 (235)
+++|..+.+++.++++|++.||+|..+ -|..+-+.+++ ..+++. ++ +...+.+.|.|
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~i---ng~~v~~~~d~---~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVAL---NGLDLTDPNVM---NTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEE---TTEETTSTTHH---HHHHHHHTTCSEEEEEEEETT
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEE---CCEECCCHHHH---HHHHHhcCCCCeEEEEEEECC
Confidence 466777778888899999999998655 44444444443 333442 22 34456666545
No 198
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.12 E-value=0.29 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.561 Sum_probs=21.8
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
...|+|..||...+-+ .-+.-+||.|+..
T Consensus 19 ~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCC
T ss_pred CeEEECCCCCCeeecC-----CCCceECCCCCcE
Confidence 4579999999988763 2234599999874
No 199
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=86.99 E-value=1.3 Score=39.53 Aligned_cols=58 Identities=31% Similarity=0.381 Sum_probs=41.0
Q ss_pred CcEEEEEeecchHHHHhcCCc-----------CcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCce
Q 038893 67 GGVVITAVEGGGNAAKAGLKS-----------GDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGG 130 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~-----------gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g 130 (235)
.+++|..+.+++.|+++|++. ||+|+.+ -|..+ +.......++.. .+ +...+.+.|.|
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~i---ng~~v---~~~~dl~~~l~~~~~g~~v~l~v~R~g 321 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSV---NGTKV---SNGSDLYRILDQCKVGDEVTVEVLRGD 321 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEE---TTBCC---SSSHHHHHHHTTCCTTCEEEEEEECSS
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEE---CCEEe---CCHHHHHHHHHhCCCcCEEEEEEEECC
Confidence 589999999999999999999 9998665 33333 333445556643 33 34667777766
No 200
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=86.72 E-value=0.64 Score=33.92 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=42.6
Q ss_pred EEEeec---CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCC--CCce
Q 038893 49 IEVEVD---KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKP--DSVY 123 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~--~a~i 123 (235)
.++.+. ..+|+.+... ..++||..+.++ ++.+|++.||+|..+- |..+-.. .....+..|+..+ +...
T Consensus 12 ~~v~l~~~~~g~G~~i~~~-~~Gv~V~~v~~~--a~~aGL~~GD~I~~vn---g~~v~~~-~~~~~~~~l~~~~~g~~v~ 84 (96)
T 1ujv_A 12 MTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEIN---QQNVQNL-SHTEVVDILKDCPIGSETS 84 (96)
T ss_dssp EEEEEECCSSSSSEEEEEE-TTEEEEEEESCG--GGSTTCCSSCEEEEET---TEECSSC-CHHHHHHHHHHSCTTSEEE
T ss_pred EEEEEEeCCCceeEEEEcC-CCCEEEEEEecc--cccCCCCCCCEEEEEC---CEECCCC-CHHHHHHHHHcCCCCCEEE
Confidence 345544 4577766433 346999999985 6889999999987653 3333111 1123344555543 3445
Q ss_pred EEecC
Q 038893 124 FVVNR 128 (235)
Q Consensus 124 f~~~~ 128 (235)
|.+.|
T Consensus 85 l~v~R 89 (96)
T 1ujv_A 85 LIIHR 89 (96)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55554
No 201
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=86.44 E-value=0.44 Score=34.76 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcC--CCCceEEecCceeeee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK--PDSVYFVVNRGGADVD 134 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~--~~a~if~~~~~g~~~d 134 (235)
..+++|..+.+++.|+. |++.||+|..+. |..+ +.......+++.. .+...+.+.|.|...+
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~In---G~~v---~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~ 67 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAID---GQPI---NTSEQIVSYVREKQAGDRVRVTFIRDRKQHE 67 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEET---TBCC---CCHHHHHHHHHHSCTTCCEEEEEEETTEEEE
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEEC---CEEC---CCHHHHHHHHHhCCCCCEEEEEEEECCEEEE
Confidence 35689999999999998 999999987654 3333 2333445566554 3466788877664433
No 202
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=86.41 E-value=0.59 Score=41.16 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=52.3
Q ss_pred EEEeecC----ccceeeeee--cCCcEEEEEeecchHHHH-hcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCC
Q 038893 49 IEVEVDK----PLGLTLGQK--PGGGVVITAVEGGGNAAK-AGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDS 121 (235)
Q Consensus 49 ~~v~~~k----plGl~~g~~--~~~~vyIa~~isG~~a~~-~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a 121 (235)
.+|.+.| .+|+.+... .+..+||..+.+|+.|++ +||+.||+|..+ -|..+-.. .....+..+....+.
T Consensus 79 r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~V---NG~~v~~~-t~~e~v~~l~~~g~~ 154 (263)
T 1z87_A 79 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSV---NGEDLSSA-THDEAVQALKKTGKE 154 (263)
T ss_dssp EEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEE---SSCBCTTS-CHHHHHHHHHHCCSC
T ss_pred EEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEE---CCEECCCc-CHHHHHHHHhcCCCe
Confidence 4577654 477765443 245799999999999999 689999998765 34443221 122344455555566
Q ss_pred ceEEecCcee
Q 038893 122 VYFVVNRGGA 131 (235)
Q Consensus 122 ~if~~~~~g~ 131 (235)
+.|.+.+.+.
T Consensus 155 V~L~V~R~~~ 164 (263)
T 1z87_A 155 VVLEVKYMKE 164 (263)
T ss_dssp CCEEEECCSS
T ss_pred EEEEEEeCcc
Confidence 7888877543
No 203
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=86.30 E-value=0.31 Score=39.21 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=24.2
Q ss_pred cccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeee
Q 038893 156 KARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFAR 197 (235)
Q Consensus 156 ~~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~ 197 (235)
...-.-+|..||.+|.+ | ...||.|+.....+.+
T Consensus 43 grL~~~rC~~CG~~~~P-------P-r~~Cp~C~s~~~~~ve 76 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFVP-------A-RSYCEHCFVKIENYVE 76 (145)
T ss_dssp TCCEEEECTTTCCEEES-------C-CSEETTTTEECCEEEE
T ss_pred CeEEEEEeCCCCcEEcC-------c-hhhCcCCCCCceeeee
Confidence 33456799999999987 2 3479999875444443
No 204
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=86.12 E-value=1 Score=39.86 Aligned_cols=58 Identities=28% Similarity=0.379 Sum_probs=40.8
Q ss_pred CcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecCcee
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNRGGA 131 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~~g~ 131 (235)
.+++|..+.+|+.|+++|++.||+|..+. |..+.+.+ +...+++. .+...+.+.|.|-
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~in---g~~v~~~~---~l~~~l~~-~~~v~l~v~R~g~ 313 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIG---EQMVQNAE---DVYEAVRT-QSQLAVQIRRGRE 313 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEET---TEECCSHH---HHHHHHTT-CSSEEEEEEETTE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEEC---CEEcCCHH---HHHHHHhC-CCeEEEEEEECCE
Confidence 58999999999999999999999986553 44443333 34445554 2556667766553
No 205
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.59 E-value=0.53 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=21.2
Q ss_pred cceEEcCCCceEEeCC------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQ 189 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~ 189 (235)
...|+|..||..|... .....-...|.|+.|+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 3469999999998765 1111112347999996
No 206
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=85.34 E-value=0.96 Score=40.74 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=40.9
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhcC-C-CCceEEecCcee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAK-P-DSVYFVVNRGGA 131 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~-~-~a~if~~~~~g~ 131 (235)
..+++|..+.+|+.|+++||+.||+|+.+ -|..+ .........|... + +...+.+.|.|-
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~i---ng~~v---~~~~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSL---NGKPL---NSFAELRSRIATTEPGTKVKLGLLRNGK 323 (345)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEECEE---TTEEC---SCHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CceEEEEEeccCChHHHcCCCCCCEEEEE---CCEEC---CCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46899999999999999999999998665 23333 3333445555542 3 345566666663
No 207
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=85.26 E-value=1.1 Score=39.34 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=45.0
Q ss_pred cceeeeee-cCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CCC-CceEEecC-ce
Q 038893 57 LGLTLGQK-PGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KPD-SVYFVVNR-GG 130 (235)
Q Consensus 57 lGl~~g~~-~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~~-a~if~~~~-~g 130 (235)
+|+.+... ...+++|..+.+|+.|+++|++.||+|..+- |..+ ........++.. .++ ...+.+.| .|
T Consensus 231 lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~in---g~~v---~~~~~l~~~l~~~~~g~~v~l~v~R~~g 302 (324)
T 1y8t_A 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVD---DRPI---NSADALVAAVRSKAPGATVALTFQDPSG 302 (324)
T ss_dssp CCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEET---TEEC---CSHHHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred cceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEEC---CEEC---CCHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 77765542 3567999999999999999999999987653 3333 223334445543 333 34666666 55
No 208
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=84.75 E-value=0.92 Score=41.25 Aligned_cols=39 Identities=33% Similarity=0.560 Sum_probs=32.1
Q ss_pred cceeeeee-c-CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 57 LGLTLGQK-P-GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 57 lGl~~g~~-~-~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
+|+.+... . +.+++|..+.+|+.|+++||+.||+|+.+-
T Consensus 87 iG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~In 127 (388)
T 1fc6_A 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVD 127 (388)
T ss_dssp CSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEET
T ss_pred EEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence 66666543 2 478999999999999999999999998764
No 209
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=84.59 E-value=0.45 Score=38.46 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=24.9
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeecc
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYD 199 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~~ 199 (235)
.....+|..||++|.+. ...||.|+...-.+.++.
T Consensus 44 ~L~~~rC~~CG~~~fPP--------r~~Cp~C~s~~~e~v~ls 78 (145)
T 2gnr_A 44 KIIGSKCSKCGRIFVPA--------RSYCEHCFVKIENYVEIN 78 (145)
T ss_dssp CCEEEECTTTCCEEESC--------CSEETTTTEECCEEEECC
T ss_pred EEEEEEECCCCcEEeCC--------CCCCCCCCCCccEEEEcc
Confidence 34568999999999772 248999988744444443
No 210
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=82.16 E-value=1.1 Score=31.19 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=30.4
Q ss_pred ccccCCCCCC-cccccccchh-hcccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 135 VKRLPKRPAP-PRFGRKLTEA-QKARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 135 ~~~~p~~~a~-~~f~~k~~~~-~~~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
++.+|++.-. .+.+++++.- -.....-.|+.||...-+ ...||.||.-
T Consensus 3 ~MAVPKrK~Sksr~~~RRsh~kl~~p~l~~c~~cGe~~~~---------H~vc~~CG~Y 52 (60)
T 3v2d_5 3 KHPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPP---------HTVCPECGYY 52 (60)
T ss_dssp CCCCCSSCCCHHHHHHHGGGCCCCCCCCEECTTTCCEECT---------TSCCTTTCEE
T ss_pred ccccCcCcCChhhcchhhccccccCCceeECCCCCCeecc---------eEEcCCCCcC
Confidence 4566655444 3334444432 223567899999998866 3589999853
No 211
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=82.09 E-value=1.3 Score=30.96 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=31.3
Q ss_pred ccccCCCCCC-cccccccchh-hcccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 135 VKRLPKRPAP-PRFGRKLTEA-QKARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 135 ~~~~p~~~a~-~~f~~k~~~~-~~~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
++.+|++.-+ .+..++++.- -.....-.|+.||...-+ ...||.||.-+.
T Consensus 3 lMAVPKrK~Sksrr~~RRsh~kl~~p~l~~c~~cG~~~~p---------H~vc~~CG~Y~g 54 (60)
T 2zjr_Z 3 KHPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLS---------HHICPNCGYYDG 54 (60)
T ss_dssp CCSCCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECT---------TBCCTTTCBSSS
T ss_pred ccccCCCCCChHHhhhhcccccccCCCceECCCCCCEeCC---------ceEcCCCCcCCC
Confidence 4566654444 3333444432 233567899999999766 359999996443
No 212
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=81.93 E-value=0.85 Score=37.87 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCcEEEEEeecchHHHHhcCCcC-cceeeec
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSG-DQVLYTS 95 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~g-D~i~~~s 95 (235)
..+++|..+.+++.|+++|++.| |+|+.+.
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~in 45 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSIN 45 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEET
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEEC
Confidence 45799999999999999999999 9987653
No 213
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=81.58 E-value=0.32 Score=39.32 Aligned_cols=24 Identities=33% Similarity=0.783 Sum_probs=14.8
Q ss_pred EEcCCCc--eEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 161 HICLDCG--YIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 161 y~C~~CG--yvyd~~tpfe~lped~~CP~C~a~ 191 (235)
-.|+.|+ |+|+. .+.|.||.|++.
T Consensus 28 P~CP~C~seytYeD-------g~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYED-------GALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEEC-------SSSEEETTTTEE
T ss_pred CCCCCCCCcceEec-------CCeEECCccccc
Confidence 4677776 66644 245677777663
No 214
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=81.35 E-value=1.3 Score=41.11 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=25.7
Q ss_pred cEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 68 GVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 68 ~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
.++|..+++|+.|+++||+.||+|+.+-
T Consensus 91 ~~~V~~V~~gsPA~~AGL~~GD~I~~In 118 (403)
T 3k50_A 91 NALISYVVPGSPAEEAGLQRGHWIMMMN 118 (403)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEET
T ss_pred eEEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence 3899999999999999999999998874
No 215
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=80.79 E-value=1.9 Score=39.92 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=41.4
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCceee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGGAD 132 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g~~ 132 (235)
..+++|..+.+++.|+++|++.||+|+.+. |..+-+ ......++.. .+ +...+.+.|.|-.
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vn---G~~v~~---~~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLN---GKPLNS---FAELRSRIATTEPGTKVKLGLLRNGKP 324 (436)
T ss_pred CcceEEEEECCCChHHHCCCCCCCEEEEEC---CEECCC---HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 468999999999999999999999987653 433332 3334444443 22 4566777776633
No 216
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=80.09 E-value=0.28 Score=29.80 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=19.4
Q ss_pred eEEcCCCceEEeCCC------CCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQK------PFDELPDTYVCPQCQ 189 (235)
Q Consensus 160 ~y~C~~CGyvyd~~t------pfe~lped~~CP~C~ 189 (235)
.|+|..||..+.... ....-...+.||.|+
T Consensus 10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 599999999886640 001112346899996
No 217
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=79.99 E-value=1 Score=39.62 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=41.5
Q ss_pred cCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCcee
Q 038893 65 PGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGGA 131 (235)
Q Consensus 65 ~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g~ 131 (235)
...+++|..+.+++.|+++|++.||+|..+- |..+- .......+++. .+ +...+.+.|.|-
T Consensus 242 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~in---g~~v~---~~~~l~~~l~~~~~g~~v~l~v~R~g~ 304 (318)
T 1te0_A 242 QLQGIVVNEVSPDGPAANAGIQVNDLIISVD---NKPAI---SALETMDQVAEIRPGSVIPVVVMRDDK 304 (318)
T ss_dssp SCCCEEEEEECTTSTTTTTCCCTTCCEEEET---TEECC---CHHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred CCCcEEEEEeCCCChHHHCCCCCCCEEEEEC---CEEcC---CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3578999999999999999999999987653 33332 22344455554 33 345667777653
No 218
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=79.72 E-value=1.1 Score=41.02 Aligned_cols=56 Identities=30% Similarity=0.505 Sum_probs=39.5
Q ss_pred EEeecC----ccceeeeeec----CCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCc--cccCcc
Q 038893 50 EVEVDK----PLGLTLGQKP----GGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDEL--WPADKL 108 (235)
Q Consensus 50 ~v~~~k----plGl~~g~~~----~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~l--W~~~~~ 108 (235)
+|.+.| ++|+.+.... .++++|..+.+|+.|+++| ++.||+|..+ -|..+ |+++.+
T Consensus 207 ~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~V---nG~~v~~~~~~~~ 273 (388)
T 3suz_A 207 ELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI---NGTSLVGLPLATC 273 (388)
T ss_dssp EEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEE---TTEECSSCCSTTH
T ss_pred EEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEE---CCEEccCCCHHHH
Confidence 466543 5777554422 3579999999999999999 9999998765 34433 655554
No 219
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=79.71 E-value=2.3 Score=29.13 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=11.3
Q ss_pred cceEEcCCCceEEeCC
Q 038893 158 RATHICLDCGYIYFLQ 173 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~ 173 (235)
...++|..||.|+.+.
T Consensus 28 ~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 28 AGDMICPECGLVVGDR 43 (58)
T ss_dssp SCCEECTTTCCEECCS
T ss_pred CCeEEeCCCCCEEecc
Confidence 4457888888888663
No 220
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.30 E-value=1 Score=27.25 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=19.4
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|++|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999998765 111111234789887
No 221
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.15 E-value=1.3 Score=26.73 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=19.7
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred CCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence 359999999998765 111122234789888
No 222
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.15 E-value=1.2 Score=26.93 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=19.6
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence 359999999998765 111112234789888
No 223
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.13 E-value=1.2 Score=26.81 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=19.7
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|++|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 359999999988765 111122234789888
No 224
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.05 E-value=1.2 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=19.6
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred CCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999998765 111122234789988
No 225
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=78.65 E-value=0.9 Score=31.93 Aligned_cols=21 Identities=33% Similarity=0.967 Sum_probs=15.3
Q ss_pred eEEcCCCc-eEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCG-YIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CG-yvyd~~tpfe~lped~~CP~C~a~ 191 (235)
.-.|+.|| |+- . + .||.||.+
T Consensus 5 mr~C~~Cg~YTL-k--------~--~CP~CG~~ 26 (60)
T 2aus_D 5 IRKCPKCGRYTL-K--------E--TCPVCGEK 26 (60)
T ss_dssp CEECTTTCCEES-S--------S--BCTTTCSB
T ss_pred ceECCCCCCEEc-c--------c--cCcCCCCc
Confidence 46899998 444 2 2 79999875
No 226
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.61 E-value=0.78 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.704 Sum_probs=22.9
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
..|.|..||..|.....+.. ...+.|+.|+.
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~-~~~~~C~~C~~ 47 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR-RKTPMCEKCRK 47 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC-SSSCCCHHHHH
T ss_pred CCeeCCcccchhCCHHHhCc-CCCCCCCCCCh
Confidence 46999999999977644433 45689999964
No 227
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=78.20 E-value=0.85 Score=36.49 Aligned_cols=41 Identities=24% Similarity=0.603 Sum_probs=12.4
Q ss_pred cceEEcCCCceEEeCCC------C-----------CCC------CC-CCCCCCCCCCCccCeeec
Q 038893 158 RATHICLDCGYIYFLQK------P-----------FDE------LP-DTYVCPQCQAPKKRFARY 198 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t------p-----------fe~------lp-ed~~CP~C~a~k~~F~~~ 198 (235)
...|.|+.|||+++-.. . .++ +| .+..||.|+..+..|...
T Consensus 44 ~l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkCg~~~a~f~q~ 108 (133)
T 3qt1_I 44 RLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQL 108 (133)
T ss_dssp CBCCBCSSSCCBCCCSCSEEEECCC----------------------------------------
T ss_pred eeEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCCCCceEEEEEE
Confidence 34799999999775430 0 111 12 246899999988888755
No 228
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.83 E-value=1.1 Score=27.00 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=19.6
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2en1_A 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 359999999998765 111112234789887
No 229
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.55 E-value=1.5 Score=26.46 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.-.. ....-...+.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999999987750 11111234788887
No 230
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=77.43 E-value=1 Score=27.19 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=19.2
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|++|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ema_A 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred cCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 3699999999886640 11111234789887
No 231
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=77.12 E-value=1 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.816 Sum_probs=15.3
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
.-+|+.||-..-. ..||.||.+
T Consensus 6 mr~C~~CgvYTLk----------~~CP~CG~~ 27 (60)
T 2apo_B 6 MKKCPKCGLYTLK----------EICPKCGEK 27 (60)
T ss_dssp CEECTTTCCEESS----------SBCSSSCSB
T ss_pred ceeCCCCCCEecc----------ccCcCCCCc
Confidence 4689999833312 279999875
No 232
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.04 E-value=1.5 Score=26.42 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=19.7
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..|+..|... .....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred CCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999998765 111222234789887
No 233
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=76.94 E-value=1.3 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred CceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999888765 011111234789888
No 234
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=76.85 E-value=1.8 Score=37.30 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=24.6
Q ss_pred cccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 156 KARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 156 ~~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
+-..++.|+.||.+|.-...|... +..|+.|+.+
T Consensus 127 Rl~~R~~~~~~G~~Yh~~~~pp~~--~~~~d~~g~~ 160 (230)
T 3gmt_A 127 RMSGRRTHPASGRTYHVKFNPPKV--EGKDDVTGEP 160 (230)
T ss_dssp HHHTEEEETTTTEEEETTTBCCSS--TTBCTTTCCB
T ss_pred HHHcCCcccccCCcccccCCCCCc--cCcCCCccCc
Confidence 345689999999999876433333 4489999863
No 235
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.64 E-value=1.2 Score=26.88 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||+.|... .....-...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2em7_A 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999988764 011111234789887
No 236
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=76.36 E-value=0.33 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=19.8
Q ss_pred cceEEcCCCce--EEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGY--IYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGy--vyd~~tpfe~lped~~CP~C~a 190 (235)
...|.|+.||- ++++.+ .-|.||-|+.
T Consensus 25 ~~~y~Cp~CG~~~v~r~at------GiW~C~~Cg~ 53 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGT------GIWQCSYCDY 53 (83)
T ss_dssp HSCEECSSSCCEEEEEEET------TEEEETTTCC
T ss_pred cccCcCCCCCCcceeccCC------CeEECCCCCC
Confidence 45799999994 555532 3699999976
No 237
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=76.24 E-value=1.9 Score=37.71 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=20.1
Q ss_pred cceEEcCCCceEE-eCCC--CCCCCCCCCCCCCCCCCc
Q 038893 158 RATHICLDCGYIY-FLQK--PFDELPDTYVCPQCQAPK 192 (235)
Q Consensus 158 ~~~y~C~~CGyvy-d~~t--pfe~lped~~CP~C~a~k 192 (235)
...|+|..||+.. -+.+ .+ ..|. .||.|+...
T Consensus 132 ~~~f~C~~C~~~~~v~~~~~~~-~~P~--~Cp~C~~~~ 166 (279)
T 1ltl_A 132 KAVFECRGCMRHHAVTQSTNMI-TEPS--LCSECGGRS 166 (279)
T ss_dssp EEEEEETTTCCEEEEECSSSSC-CCCS--CCTTTCCCC
T ss_pred EEEEEcCCCCCEEEEEecCCcc-cCCC--cCCCCCCCC
Confidence 4579999999653 2221 12 2333 899998753
No 238
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.14 E-value=1.2 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|++|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred cCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3599999999987650 11111234789887
No 239
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.05 E-value=1.1 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred CCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 359999999998765 011111234789888
No 240
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=75.95 E-value=3 Score=41.16 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=35.6
Q ss_pred EEEeec---Cccceeeeee-------cCCcEEEEEeecchHHHHhc-CCcCcceeeec
Q 038893 49 IEVEVD---KPLGLTLGQK-------PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTS 95 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~-------~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s 95 (235)
.+|.+. ..+|+.+.-. .+.++||..+.+|+.|+++| ++.||+|..+-
T Consensus 61 ~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vn 118 (721)
T 2xkx_A 61 EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 118 (721)
T ss_pred EEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEEC
Confidence 446665 3577655331 15679999999999999999 99999997654
No 241
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=75.66 E-value=2.6 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKR 194 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~ 194 (235)
.-|.|+.|+++=... ...|-.|++++..
T Consensus 4 gDW~C~~C~~~Nfa~--------r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRK--------RLKCFRCGADKFD 31 (32)
T ss_dssp SEEECTTTCCEEETT--------CCBCTTTCCBTTC
T ss_pred CCCCcCcCcCCcChh--------cceecCCCCcCCC
Confidence 369999999885552 3589999998753
No 242
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=75.23 E-value=3 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEeecchHHHHhcCCcCcceeee
Q 038893 70 VITAVEGGGNAAKAGLKSGDQVLYT 94 (235)
Q Consensus 70 yIa~~isG~~a~~~Gi~~gD~i~~~ 94 (235)
+|..+.+++.|+.+|++.||+|..+
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~i 134 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEI 134 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEE
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEE
Confidence 8999999999999999999987543
No 243
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=75.21 E-value=1.4 Score=26.46 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=19.2
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred cCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence 369999999998764 011111234789887
No 244
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=75.14 E-value=5.6 Score=30.62 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=39.5
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CCC-CceEEecCcee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KPD-SVYFVVNRGGA 131 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~~-a~if~~~~~g~ 131 (235)
..+++|..+.+++.|+.+ ++.||+|..+- |..+ ........+++. .++ ...+.+ |.|.
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~In---G~~v---~~~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESIN---GMPT---SNLTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEET---TEEC---SSHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEEC---CEEc---CCHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 467999999999999999 99999987663 3333 333344445553 333 456777 7664
No 245
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=74.76 E-value=3 Score=38.88 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=41.4
Q ss_pred CcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCceee
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGGAD 132 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g~~ 132 (235)
.+++|..+.+++.|+++|++.||+|+.+ -|..+ +.......++.. .+ +...+.+.|.|-.
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~v---nG~~v---~~~~~l~~~l~~~~~g~~v~l~V~R~g~~ 343 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQI---NDTKI---TQATQVKTTISLLRVGSTVKIIVERDNKP 343 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEE---TTEEC---CSHHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEE---CCEEc---CCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 6899999999999999999999998765 34333 333344445543 33 3456777776643
No 246
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=74.74 E-value=1.5 Score=27.74 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEcCCCceEEeCC------CC-CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KP-FDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tp-fe~lped~~CP~C~a 190 (235)
..|+|..|+..|... .. ...-...+.|+.|+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k 49 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence 469999999888654 11 222234579999975
No 247
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.15 E-value=2 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=19.2
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46 (46)
T ss_dssp SSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred CCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999998664 011111234789887
No 248
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.95 E-value=0.79 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
..|+|..|++.|.-. .....-...|.|+.|+.
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 45 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSF 45 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCC
Confidence 369999999988664 01111123478999975
No 249
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.86 E-value=0.66 Score=31.03 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=20.9
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|+|..|++.|.-.. ....-...|.|+.|+.
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~ 50 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCC
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCc
Confidence 4699999999986640 0011123479999975
No 250
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.78 E-value=4.8 Score=27.25 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.4
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
....++|+.||.. .+ +..|.|.-||+. +|.+...
T Consensus 11 ~~~k~iCpkC~a~-~~-------~gaw~CrKCG~~--~lr~k~k 44 (51)
T 3j21_g 11 IFKKYVCLRCGAT-NP-------WGAKKCRKCGYK--RLRPKAK 44 (51)
T ss_dssp SSSEEECTTTCCE-EC-------TTCSSCSSSSSC--CCEEECC
T ss_pred HhCCccCCCCCCc-CC-------CCceecCCCCCc--ccccccc
Confidence 3568999999988 33 467999999987 5555433
No 251
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=73.73 E-value=1.5 Score=26.28 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=19.3
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...+.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred CCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3599999999987750 00111234789887
No 252
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=73.63 E-value=1.3 Score=26.73 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=19.1
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred CCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence 3599999999887650 11111234789887
No 253
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=73.28 E-value=2.7 Score=41.44 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=43.9
Q ss_pred Cccceeeeee-cCCcEEEEEeecchHHHHhc-CCcCcceeeeccccCCCccccCccchhhhhhhcCCCCceEEecC
Q 038893 55 KPLGLTLGQK-PGGGVVITAVEGGGNAAKAG-LKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVNR 128 (235)
Q Consensus 55 kplGl~~g~~-~~~~vyIa~~isG~~a~~~G-i~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~~~~a~if~~~~ 128 (235)
.++|+.+... ...+++|..+.+|+.|+++| ++.||+|..+- |..+-.. ........+....+.+.|.+.+
T Consensus 318 ~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN---g~~v~~~-~~~e~~~~l~~~~~~v~L~v~r 389 (721)
T 2xkx_A 318 TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN---GVDLRNA-SHEQAAIALKNAGQTVTIIAQY 389 (721)
T ss_pred CCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEEC---CEECCCC-CHHHHHHHHHhcCCeEEEEEEe
Confidence 3467654322 24689999999999999999 99999987653 3333110 1223344444444555566554
No 254
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.83 E-value=2.3 Score=25.54 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=18.9
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|++|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~ 46 (46)
T 2ep3_A 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 359999999998765 011111234688876
No 255
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.80 E-value=1.1 Score=26.98 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=18.9
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|++|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytn_A 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46 (46)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence 359999999888664 011111234789888
No 256
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=72.56 E-value=0.56 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=17.5
Q ss_pred eEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
.|+|..|+..|... .....-...+.|+.|+.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 38 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNR 38 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCC
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence 37788888777554 00111123467888865
No 257
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.44 E-value=1.3 Score=26.76 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=19.2
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999888664 011112234789887
No 258
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=72.31 E-value=1.5 Score=26.47 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=19.0
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.-.. ....-...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2el6_A 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999999886640 01111234789887
No 259
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=72.31 E-value=2.6 Score=36.39 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=22.0
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
.....+|..|++.|+-+...++- ..-+||.|+..
T Consensus 118 ~~~~~~C~~C~~~~~~~~~~~~~-~~p~C~~Cgg~ 151 (249)
T 1m2k_A 118 SLRVVRCTSCNNSFEVESAPKIP-PLPKCDKCGSL 151 (249)
T ss_dssp EEEEEEESSSSCEEECSSCCCSS-SCCBCSSSSSB
T ss_pred CcceeEeCCCCCcccchhhccCC-CCCCCCCCCCC
Confidence 34568999999999765322110 01279999863
No 260
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=72.20 E-value=0.77 Score=40.74 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLY 93 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~ 93 (235)
..+++|..+.+|+.|+++|++.||+|+.
T Consensus 253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ 280 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGGLKENDVIIS 280 (332)
T ss_dssp ----------------------------
T ss_pred CCceEEEEeccCCChHHcCCCCCCEEEE
Confidence 4579999999999999999999997644
No 261
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.08 E-value=1.3 Score=26.59 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=19.0
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 359999999888664 011122234789887
No 262
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.03 E-value=1.9 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=21.4
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
..|+|..|++.|... .........|.|+.|+.
T Consensus 36 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 73 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73 (110)
T ss_dssp CSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCC
T ss_pred cCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcc
Confidence 359999999988765 11222233578999965
No 263
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.01 E-value=3.7 Score=26.74 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=10.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..++|..||.+|.+.
T Consensus 23 gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 23 GEIVCAKCGYVIEEN 37 (50)
T ss_dssp TEEEESSSCCBCCCC
T ss_pred CeEECcccCCccccc
Confidence 457777777777653
No 264
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.54 E-value=1.1 Score=30.13 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=21.6
Q ss_pred cceEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
...|+|..|+..|.-. .....-...|.|+.|+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 54 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCC
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCC
Confidence 3469999999888654 11112223479999975
No 265
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.31 E-value=1.4 Score=26.63 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=19.1
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||+.|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred CCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence 359999999888664 011112234789887
No 266
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.26 E-value=1 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=19.0
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred CCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999999886650 11111234789888
No 267
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.82 E-value=2.1 Score=28.88 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.8
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..|++.|.-.
T Consensus 15 ~~~C~~C~~~f~~~ 28 (86)
T 1x6h_A 15 PYACSHCDKTFRQK 28 (86)
T ss_dssp CEECSSSSCEESSH
T ss_pred CCcCCCCCCccCCH
Confidence 47788888777554
No 268
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=70.65 E-value=0.87 Score=42.54 Aligned_cols=26 Identities=46% Similarity=0.755 Sum_probs=0.0
Q ss_pred CcEEEEEeecchHHHHhcCCcCccee
Q 038893 67 GGVVITAVEGGGNAAKAGLKSGDQVL 92 (235)
Q Consensus 67 ~~vyIa~~isG~~a~~~Gi~~gD~i~ 92 (235)
.+++|..+.+|+.|+++|++.||+|.
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~ 408 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVII 408 (448)
T ss_dssp --------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEE
Confidence 46899999999999999999999763
No 269
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.63 E-value=1.4 Score=26.49 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEEcCCCceEEeCC------CC-CCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ------KP-FDELPDTYVCPQC 188 (235)
Q Consensus 160 ~y~C~~CGyvyd~~------tp-fe~lped~~CP~C 188 (235)
.|+|..||..|... .. ...-...|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C 47 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence 59999999888654 12 2222334788887
No 270
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.62 E-value=1.4 Score=26.62 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=18.9
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...+.|++|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred cCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999999987650 00111234688887
No 271
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.52 E-value=0.93 Score=27.42 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=18.8
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|++|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c 46 (46)
T 2ytk_A 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred CCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence 3599999999887640 00001124789988
No 272
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=70.52 E-value=1 Score=29.24 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEcCCCceEEeCCC------CC-C-CCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PF-D-ELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pf-e-~lped~~CP~C~a 190 (235)
..|+|..||..|.... .. . .-...|.|+.|+.
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k 48 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFK 48 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCC
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCC
Confidence 4699999999887640 11 1 1223579999975
No 273
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=70.13 E-value=0.49 Score=29.87 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=8.6
Q ss_pred EEcCCCceEEeCC
Q 038893 161 HICLDCGYIYFLQ 173 (235)
Q Consensus 161 y~C~~CGyvyd~~ 173 (235)
|+|..||..|...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 6777777766543
No 274
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.04 E-value=1.3 Score=26.64 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=12.6
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSEECSSSCCEESSS
T ss_pred CCeECCcCCchhCCH
Confidence 359999999998775
No 275
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.94 E-value=1.4 Score=26.54 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=18.9
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred CCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence 3599999999887640 00111234789887
No 276
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=69.85 E-value=1.4 Score=43.23 Aligned_cols=28 Identities=21% Similarity=0.594 Sum_probs=3.5
Q ss_pred ceEEcCCCceEEe-CCCCCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYF-LQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 159 ~~y~C~~CGyvyd-~~tpfe~lped~~CP~C~a~ 191 (235)
..-+|..|||+-. +.+ .+.|.||.|+..
T Consensus 539 ~~~~C~~CGy~~~~~~~-----~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 539 PVDKCFTCGSTHEMTPT-----ENGFVCSICGET 567 (605)
T ss_dssp CEEET-----------------------------
T ss_pred CCccCcccCCcCccCcc-----ccCCcCCCCCCC
Confidence 3569999998653 211 134799999964
No 277
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.75 E-value=4.4 Score=30.30 Aligned_cols=30 Identities=30% Similarity=0.723 Sum_probs=20.7
Q ss_pred EEcCCCceEEeCC---CCCCCCCCCCCCCCCCC
Q 038893 161 HICLDCGYIYFLQ---KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 161 y~C~~CGyvyd~~---tpfe~lped~~CP~C~a 190 (235)
-.|..|..-|=.. .+.+.+|+.|.||.|..
T Consensus 43 i~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 43 ICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp EEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4677776555444 24467889999999954
No 278
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=69.13 E-value=4.1 Score=25.12 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
...|.|..|-+.-.+ +..+|..|..+|.
T Consensus 5 ~g~W~C~~C~~~N~~--------~~~kC~aC~tpkP 32 (33)
T 3gj3_B 5 SGTWDCDTCLVQNKP--------EAVKCVACETPKP 32 (33)
T ss_dssp -CCEECTTTCCEECT--------TCSBCTTTCCBCC
T ss_pred CCceeCCcccCCCcc--------ccCEEcccCCCCC
Confidence 347999999888765 3568999998874
No 279
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.85 E-value=1.3 Score=26.58 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=18.4
Q ss_pred eEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 160 ~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
.|+|..||..|... .....-...|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 58999999887654 011112234788887
No 280
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=68.35 E-value=3.7 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=20.6
Q ss_pred ceEEcCCCceEEeCC------------------CCCCCC-CCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------------------KPFDEL-PDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------------------tpfe~l-ped~~CP~C~a 190 (235)
..+.|.+|+..+++. .+.... +.+|.||.|..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 456788888777764 122222 36899999954
No 281
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=68.28 E-value=4.8 Score=34.76 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=20.9
Q ss_pred cceEEc--CCCceEEeCC---CCCCCCCCCCCCCCCCC
Q 038893 158 RATHIC--LDCGYIYFLQ---KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C--~~CGyvyd~~---tpfe~lped~~CP~C~a 190 (235)
...|+| ..||+...-. ...........||.|+.
T Consensus 139 ~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~ 176 (268)
T 2vl6_A 139 KATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 176 (268)
T ss_dssp ECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCC
T ss_pred EEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCC
Confidence 567999 9999775432 11122223348999987
No 282
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=67.77 E-value=0.81 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=19.9
Q ss_pred ceEEcCCCceEEeCCC---CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK---PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t---pfe~lped~~CP~C~a 190 (235)
..|+|..||..|.-.. ....-...+.|+.|+.
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCC
Confidence 4699999998764320 0001123479999976
No 283
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.65 E-value=1.3 Score=26.83 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=18.6
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2elz_A 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46 (46)
T ss_dssp SSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred CCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 359999999888654 011111234788887
No 284
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.04 E-value=1.4 Score=26.58 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=18.9
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en6_A 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46 (46)
T ss_dssp CCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred cCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence 3699999999987650 00011134789887
No 285
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=67.02 E-value=1.4 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=20.9
Q ss_pred ceEEcCCCceEEeCCC--------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK--------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t--------pfe~lped~~CP~C~a 190 (235)
..|+|..|+..|.-.. .-..-...|.|+.|+.
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~ 53 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT 53 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSC
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 3599999999887640 0111113579999975
No 286
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.01 E-value=1.2 Score=26.80 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=18.7
Q ss_pred ceEEcCCCceEEeCC--------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... +--.+ ..+.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISHQRTHAGE--KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHTTS--CCSCSSCC
T ss_pred cCcCCCCCCcccCcHHHHHHHHHHcCCC--CCCCCCCC
Confidence 359999999988764 11112 24689887
No 287
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=66.97 E-value=5.1 Score=29.64 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=18.0
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
|..--|+.|.++.++ + .||.|+..
T Consensus 21 m~~rAC~~C~~v~~~--------d--~CPnCgs~ 44 (81)
T 3p8b_A 21 MSEKACRHCHYITSE--------D--RCPVCGSR 44 (81)
T ss_dssp -CCEEETTTCBEESS--------S--SCTTTCCC
T ss_pred hhHHHHhhCCCccCC--------C--CCCCCCCC
Confidence 444579999999855 2 69999874
No 288
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=66.87 E-value=1.5 Score=31.71 Aligned_cols=32 Identities=22% Similarity=0.542 Sum_probs=21.5
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
..|+|..||..|.-. .....-...|.|+.|+.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k 64 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPA 64 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSC
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCC
Confidence 369999999998775 01111123479999975
No 289
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.44 E-value=2.3 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceEEcCCCceEEeCC--------CCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe~lped~~CP~C~a 190 (235)
..|+|..|++.|... +--.+....+.|+.|+.
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~ 73 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccc
Confidence 358999999888654 11112124578999975
No 290
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=66.39 E-value=1.5 Score=26.48 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=18.3
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|..||..+... .....-...+.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em0_A 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence 359999999887654 011111234688887
No 291
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.32 E-value=1.6 Score=26.04 Aligned_cols=15 Identities=13% Similarity=0.241 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 9 KPFGCSCCEKAFSSK 23 (44)
T ss_dssp CCEECSSSSCEESSH
T ss_pred cCccCCCCCcccCCH
Confidence 359999999988765
No 292
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.84 E-value=1.5 Score=26.46 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=18.8
Q ss_pred ceEEcCCCceEEeCC--------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe~lped~~CP~C 188 (235)
..|+|..||..+... +-..+ ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C 46 (46)
T 2ytd_A 11 KPYKCSECGKAFHRHTHLNEHRRIHTGY--RPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHTCC--CSSCSSCC
T ss_pred cCeECCCCCCeeCChHHHHHHHHHcCCC--CCCCCCCC
Confidence 359999999988765 11112 24789887
No 293
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.82 E-value=1.5 Score=26.40 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=18.7
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred CCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3599999999887640 00011124688887
No 294
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.59 E-value=6.2 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=22.4
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKR 194 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~ 194 (235)
..|.|..|-|+=.+ ....|-.|+.++..
T Consensus 10 ~~W~C~~CT~~N~~--------~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 10 GYWDCSVCTFRNSA--------EAFKCMMCDVRKGT 37 (53)
T ss_dssp CCEECSSSCCEECS--------SCSSCSSSCCCCCC
T ss_pred CCcCCCCCccCCCC--------CCCccCCCCCcCCc
Confidence 47999999999766 23479999998764
No 295
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=64.50 E-value=1.2 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=18.8
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||+.|.... ....-...+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred CCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999999887651 00011234688887
No 296
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=63.46 E-value=4.9 Score=32.26 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=23.9
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
-..++.|+.||.+|.-...+... +..|+.|+.
T Consensus 124 l~~R~~~~~~g~~y~~~~~pp~~--~~~~~~~~~ 155 (216)
T 3dl0_A 124 LTGRRICSVCGTTYHLVFNPPKT--PGICDKDGG 155 (216)
T ss_dssp HHTEEEETTTCCEEETTTBCCSS--TTBCTTTCC
T ss_pred HHCCCcCCccCCccccccCCCcc--cCccccccc
Confidence 35689999999999987433333 348999975
No 297
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.10 E-value=1.7 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=18.6
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..+.... ....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2yso_A 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred CCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3599999999887640 00011123789887
No 298
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=62.94 E-value=0.91 Score=30.73 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
.|+|..||..|.-.. ....-...|.|+.|+.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k 40 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGK 40 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCC
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCC
Confidence 599999998886650 0000112468999975
No 299
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=62.79 E-value=1.8 Score=31.18 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=4.4
Q ss_pred eEEcCCCc
Q 038893 160 THICLDCG 167 (235)
Q Consensus 160 ~y~C~~CG 167 (235)
+..|+ ||
T Consensus 4 vv~C~-C~ 10 (71)
T 1gh9_A 4 IFRCD-CG 10 (71)
T ss_dssp EEEET-TS
T ss_pred EEECC-CC
Confidence 45676 76
No 300
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=62.26 E-value=4 Score=29.32 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=16.9
Q ss_pred EEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 161 HICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 161 y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
--|+.|-++.+. ..||.|+..
T Consensus 12 ~AC~~C~~~~~~----------~~CPnC~s~ 32 (69)
T 1ryq_A 12 KACRHCHYITSE----------DRCPVCGSR 32 (69)
T ss_dssp EEETTTCBEESS----------SSCTTTCCC
T ss_pred hhHHhCCccccC----------CcCCCccCC
Confidence 479999999844 389999864
No 301
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.25 E-value=1.2 Score=26.88 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 11 RPYICTVCGKAFTDR 25 (46)
T ss_dssp CSEECTTTCCEESSH
T ss_pred CCcCCCCCCchhCCH
Confidence 359999999988764
No 302
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=61.82 E-value=6.7 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.691 Sum_probs=21.4
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
..|.|+.|-|+=.+ ....|-+|+.++.
T Consensus 7 ~~W~C~~CT~~N~~--------~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHP--------ALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECT--------TCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCC--------CCCeeCCCCCcCc
Confidence 47999999999766 3357999988765
No 303
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.08 E-value=1.5 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|.-.
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 11 KPYKCVECGKGYKRR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECcccCchhCCH
Confidence 369999999988764
No 304
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=60.86 E-value=3.9 Score=24.93 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=18.8
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
-|.|+.|+.+=.. ....|-.|++|+.
T Consensus 6 DW~C~~C~~~Nfa--------~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 6 DWQCKTCSNVNWA--------RRSECNMCNTPKY 31 (33)
T ss_dssp SCBCSSSCCBCCT--------TCSBCSSSCCBTT
T ss_pred CcccCCCCCcccc--------ccccccccCCcCC
Confidence 5899999877544 2347888888764
No 305
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.85 E-value=1.4 Score=26.62 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=18.3
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C 188 (235)
..|+|..||..|.... ....-...|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred CCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3599999998886540 00111234688887
No 306
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.82 E-value=1.4 Score=26.52 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=12.2
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 11 KPYMCNECGKAFSVY 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCeECCCCCchhCCH
Confidence 359999999988664
No 307
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.74 E-value=2 Score=25.94 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em2_A 11 KPFKCKECGKAFRQN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCEECCcCCchhCCH
Confidence 359999999998764
No 308
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=60.61 E-value=5.8 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a~ 191 (235)
.-.|..|...|-.. -+..++|+ +|.||.|.+.
T Consensus 24 ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 24 VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 46677777666544 24556664 8999999653
No 309
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=60.59 E-value=5.3 Score=34.44 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=21.3
Q ss_pred ccceEEcCCCceEEeCCCC-----CCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQKP-----FDELPDTYVCPQCQA 190 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tp-----fe~lped~~CP~C~a 190 (235)
.....+|..|++.|+-+.. -.++| +||.|+.
T Consensus 120 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~p---~C~~Cgg 155 (253)
T 1ma3_A 120 SMDKLDCLDCHETYDWSEFVEDFNKGEIP---RCRKCGS 155 (253)
T ss_dssp EEEEEEETTTCCEEEGGGTHHHHHTTCCC---CCTTTCC
T ss_pred CcCeeeeCCCCCcCcHHHHHHHhccCCCC---CCCCCCC
Confidence 3456899999999976421 11233 6999987
No 310
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=60.27 E-value=3.1 Score=36.66 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=20.4
Q ss_pred cceEEcCCCceEEeCCC--------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQK--------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t--------pfe~lped~~CP~C~a 190 (235)
...++|..|++.|+.+. +...+| +||.|+.
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P---~C~~Cgg 171 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFV---KCDVCGE 171 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCCSCC---BCTTTCC
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCCCCc---cCCCCCC
Confidence 45689999999997531 111233 6999976
No 311
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=60.01 E-value=7.1 Score=24.23 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.6
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
...|.|..|-+.-+. +...|..|..+|.
T Consensus 5 ~G~W~C~~C~v~N~~--------~~~kC~aCet~Kp 32 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKA--------DSTKCIACESAKP 32 (34)
T ss_dssp -CCEECTTTCCEECS--------SCSBCTTTCCBC-
T ss_pred CCceECCeeEeECcc--------ccCEEcccCCcCC
Confidence 347999999766655 4569999999875
No 312
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=59.57 E-value=6.9 Score=31.99 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=19.4
Q ss_pred ceEEcCCCceEEeCC---CCCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ---KPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~---tpfe~lped~~CP~C~a~ 191 (235)
..|+|+.|||.-..- .+-+...+...||.|+.+
T Consensus 77 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 112 (166)
T 3ir9_A 77 VTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 112 (166)
T ss_dssp EEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred EEEECCCCCceeEEEeecChhhcccccccccccCcc
Confidence 368999999753110 011112234589999985
No 313
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=59.56 E-value=4.4 Score=21.11 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=10.0
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|.|..||..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4889999988743
No 314
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=59.46 E-value=4.3 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=10.0
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|.|..||+.+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4889999887743
No 315
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=59.46 E-value=4.6 Score=37.58 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCccccCccchhhhhhhc-CC-CCceEEecCcee
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQA-KP-DSVYFVVNRGGA 131 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW~~~~~g~~i~AIn~-~~-~a~if~~~~~g~ 131 (235)
..+++|..+.+|+.|+++|++.||+|+.+ -|..+-+ ......++.. .+ +...+.+.|.|.
T Consensus 285 ~~G~~V~~V~~gspA~~AGL~~GDvI~~i---nG~~v~~---~~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSL---NGKPISS---FAALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp CCSEECCCCTTCSSSTTTTCCTTCEECBS---SSSBCCS---SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred CCceEEEEeccCCHHHHcCCCCCCEEEEE---CCEEcCC---HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 35899999999999999999999998644 3444433 3344445543 22 345677777663
No 316
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.32 E-value=0.9 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=19.8
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|+|..|+..|.... ....-...+.|+.|+.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k 53 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCc
Confidence 4699999998886540 0001112478999975
No 317
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.07 E-value=1.6 Score=26.22 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=18.3
Q ss_pred ceEEcCCCceEEeCC--------CCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe~lped~~CP~C 188 (235)
..|+|..||..|... +--.+ ..+.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C 46 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCLLKHERLHSGE--KPSGPSSG 46 (46)
T ss_dssp CCCCBTTTTBCCSCHHHHHHHHHHCCSS--SCCCCCCC
T ss_pred CCeECCCCCCccCchHHHHHHHHhcCCC--CCCCCCCC
Confidence 359999999887664 11112 34688887
No 318
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=59.06 E-value=2 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=20.1
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|+|..|++.|.... ....-...+.|+.|+.
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 72 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY 72 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence 3589999998886540 0011123478999965
No 319
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=58.97 E-value=2.9 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=18.1
Q ss_pred ceEEcCCCceEEeCC------CCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~------tpfe~lped~~CP~C~a 190 (235)
..|+|..|+..|... .....-...|.|+.|+.
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 81 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK 81 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence 357888888777543 01111123468888864
No 320
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.94 E-value=1.2 Score=26.79 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.6
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 12 PYKCSDCGKSFTWK 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CccCCccChhhCCH
Confidence 59999999888664
No 321
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.59 E-value=4.4 Score=27.02 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.6
Q ss_pred cceEEcCCCceEEeC
Q 038893 158 RATHICLDCGYIYFL 172 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~ 172 (235)
..+|.|..|||+|..
T Consensus 35 ~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 35 GDRWACGKCGYTEWK 49 (50)
T ss_dssp SSEEECSSSCCEEEC
T ss_pred CCeEECCCCCCEEEC
Confidence 468999999999854
No 322
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=58.15 E-value=4.5 Score=34.72 Aligned_cols=32 Identities=19% Similarity=0.600 Sum_probs=21.2
Q ss_pred ccceEEcCCCceEEeCCC-----CCCCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQK-----PFDELPDTYVCPQCQAP 191 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~t-----pfe~lped~~CP~C~a~ 191 (235)
....++|..|++.|+-+. .-+.+| +||.|+..
T Consensus 118 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~p---~C~~Cgg~ 154 (246)
T 1yc5_A 118 NVEEYYCVRCEKKYTVEDVIKKLESSDVP---LCDDCNSL 154 (246)
T ss_dssp EEEEEEETTTCCEEEHHHHHHHTTTCSSC---BCTTTCCB
T ss_pred ccceeEcCCCCCCCcHHHHHHHhccCCCC---CCCCCCCc
Confidence 355789999999997531 111233 79999863
No 323
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=57.32 E-value=11 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=20.4
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCc
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPK 192 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k 192 (235)
..|.|+.|.|+=.+. ...|-.|+.++
T Consensus 5 ~~W~C~~CTf~N~~~--------~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPG--------TGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSS--------CSSCSSSCCCC
T ss_pred ccccCCcccccCCCC--------CCccCCcCCCC
Confidence 369999999998662 34799998875
No 324
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.30 E-value=8.7 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=23.9
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCee
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFA 196 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~ 196 (235)
...|.|..|-..-+. +...|..|+.+|....
T Consensus 9 ~g~W~C~~C~v~N~a--------~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 9 IGTWDCDTCLVQNKP--------EAIKCVACETPKPGTC 39 (47)
T ss_dssp SSSEECSSSCCEECS--------SCSBCSSSCCBCSCSS
T ss_pred CCceECCeeeccCcc--------CCceecCcCCCCCCCc
Confidence 347999999776655 3568999999987655
No 325
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=57.23 E-value=5.6 Score=35.36 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.1
Q ss_pred cceEEcCCCceEEeCC
Q 038893 158 RATHICLDCGYIYFLQ 173 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~ 173 (235)
....+|..|++.|+.+
T Consensus 152 ~~~~~C~~C~~~~~~~ 167 (290)
T 3u31_A 152 VFEAVCCTCNKIVKLN 167 (290)
T ss_dssp EEEEEETTTCCEEECC
T ss_pred cCcceeCCCCCcCChh
Confidence 4568999999999764
No 326
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.22 E-value=1.7 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|.|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 11 RPYGCNECGKNFGRH 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCEEccccCcccCCH
Confidence 359999999988764
No 327
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=57.21 E-value=8.1 Score=32.25 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=23.7
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
...+..|+.||.+|.-...+... ...|+.|+.
T Consensus 153 l~~R~~~~~~g~~y~~~~~pp~~--~~~~~~~~~ 184 (243)
T 3tlx_A 153 ISGRLIHKPSGRIYHKIFNPPKV--PFRDDVTNE 184 (243)
T ss_dssp HHTEEEETTTTEEEETTTBCCSS--TTBCTTTCC
T ss_pred HHcCCCCcccCcccccccCCCcc--cCccccccc
Confidence 35688999999999886433333 448999975
No 328
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=56.95 E-value=5.1 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=10.0
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|.-
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4889999987743
No 329
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=56.77 E-value=5.7 Score=36.44 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=20.4
Q ss_pred cceEEcCCCceEEeCCC--------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQK--------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t--------pfe~lped~~CP~C~a 190 (235)
...++|..|+++|+.+. +...+| +||.|+.
T Consensus 142 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P---~Cp~Cgg 179 (361)
T 1q14_A 142 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFV---KCDVCGE 179 (361)
T ss_dssp EEEEEETTTCCEECTHHHHHHTTSSSCSCCC---BCTTTCC
T ss_pred ccccCcCCCCccCcHHHHHHHHhhcccCCCC---CCcCCCC
Confidence 45789999999997641 111122 6999976
No 330
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.26 E-value=7.4 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCee
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFA 196 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~ 196 (235)
...|.|..|-..-+. +...|..|+.+|..-.
T Consensus 9 ~gsW~C~~C~v~N~a--------~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 9 EGSWDCELCLVQNKA--------DSTKCLACESAKPGTK 39 (47)
T ss_dssp CSSCCCSSSCCCCCS--------SCSBCSSSCCBCCCCC
T ss_pred CCeeECCeeecCCcC--------CcceecCcCCCCCCCc
Confidence 347999999655443 4568999999887653
No 331
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=56.05 E-value=5 Score=20.80 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.2
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 4899999988743
No 332
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.69 E-value=7.2 Score=31.18 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=23.8
Q ss_pred ccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 157 ARATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
...++.|+.||.+|.-...+... +..|+.|+.
T Consensus 124 l~~R~~~~~~g~~y~~~~~pp~~--~~~~~~~~~ 155 (216)
T 3fb4_A 124 LTGRWICKTCGATYHTIFNPPAV--EGICDKDGG 155 (216)
T ss_dssp HHSEEEETTTCCEEETTTBCCSS--TTBCTTTCC
T ss_pred HHcCCCCCccCCccccccCCCCc--ccccccccC
Confidence 35689999999999986433333 448999975
No 333
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=55.13 E-value=5.4 Score=20.97 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=10.5
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 4899999988743
No 334
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=55.11 E-value=1.5 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=18.1
Q ss_pred eEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
.|+|..||..|.... ....-...|.|+.|+.
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k 39 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 39 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCC
Confidence 488888888876540 0000112368888865
No 335
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=54.36 E-value=5.6 Score=20.75 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=10.5
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|.|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 1rik_A 2 KFACPECPKRFMR 14 (29)
T ss_dssp CEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4899999988854
No 336
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=54.32 E-value=9.6 Score=38.01 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=30.8
Q ss_pred ccceeeeeecCCcEEEEEeecc--------hHHHHhc--CCcCcceeeec
Q 038893 56 PLGLTLGQKPGGGVVITAVEGG--------GNAAKAG--LKSGDQVLYTS 95 (235)
Q Consensus 56 plGl~~g~~~~~~vyIa~~isG--------~~a~~~G--i~~gD~i~~~s 95 (235)
-+|+.+.. .+++++|..+++| +.|+++| |+ ||+|+.+-
T Consensus 738 g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~ 785 (1045)
T 1k32_A 738 RIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDID 785 (1045)
T ss_dssp BCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEET
T ss_pred eecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEEC
Confidence 36666654 3678999999998 9999999 99 99987653
No 337
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=53.68 E-value=4.4 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEcCCCceEEeCC---CCCCCCCCCCCCCCCCCCc
Q 038893 161 HICLDCGYIYFLQ---KPFDELPDTYVCPQCQAPK 192 (235)
Q Consensus 161 y~C~~CGyvyd~~---tpfe~lped~~CP~C~a~k 192 (235)
-+|..|..=|-.. ..-+.+|+.|.||.|...|
T Consensus 34 IqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~sK 68 (68)
T 3o70_A 34 IECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSK 68 (68)
T ss_dssp EECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTCC
T ss_pred EECCCCCccccccccCcCcccCCCcEECCCCCCCC
Confidence 3667776433333 1223578999999996553
No 338
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=53.47 E-value=1.7 Score=26.28 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.4
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 12 PYECKECGKAFSQT 25 (46)
T ss_dssp SCBCSSSCCBCSCH
T ss_pred ceECCCCCchhCCH
Confidence 59999999887664
No 339
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=52.92 E-value=7.8 Score=32.88 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=20.6
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
...+.|+.||--|--. ..++...+.||.|.-+
T Consensus 132 L~l~~C~~Cgg~fv~~--~~~~~~~f~Cp~C~~p 163 (192)
T 2avu_E 132 LQLSSCNCCGGNFITH--AHQPVGSFACSLCQPP 163 (192)
T ss_dssp EEEEECTTTCCEEEEE--SSCCSSCCCCTTC---
T ss_pred eeeCcCCCCCCCeeCc--cCCCCCCCcCCCCCCc
Confidence 4579999999554332 2355567899999743
No 340
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=52.41 E-value=39 Score=25.70 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=42.5
Q ss_pred EEEeec---CccceeeeeecCCcEEEEEeecchHHHHhcCCcCcceeeeccccCCCcc--ccCccchhhhhhhcCC--CC
Q 038893 49 IEVEVD---KPLGLTLGQKPGGGVVITAVEGGGNAAKAGLKSGDQVLYTSSFFGDELW--PADKLGFTKTAIQAKP--DS 121 (235)
Q Consensus 49 ~~v~~~---kplGl~~g~~~~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s~~fG~~lW--~~~~~g~~i~AIn~~~--~a 121 (235)
.+|++. ..+|+.+... ..+.+|..+.++ ++.+|++.||+|..+. |..+- +++ +.+..|...+ ..
T Consensus 14 ~~V~L~Kg~~G~GFsI~~~-~~g~~V~~I~~~--~~~aGL~~GD~Il~VN---G~~v~~~~h~---evv~~lk~~~~G~~ 84 (113)
T 3soe_A 14 VTIPLIKGPKGFGFAIADS-PTGQKVKMILDS--QWCQGLQKGDIIKEIY---HQNVQNLTHL---QVVEVLKQFPVGAD 84 (113)
T ss_dssp EEEEEECBTTBSSEEEEEE-TTEEEEEEESCG--GGSTTCCTTCEEEEET---TEECTTSCHH---HHHHHHHHSCTTCE
T ss_pred EEEEEEECCCcccEEEeCC-CCCcEEEEecCh--HHhCCCCCCCEEEEEC---CEECCCCCHH---HHHHHHHcCCCCCE
Confidence 456654 4577777433 345678888774 6789999999987764 33221 222 3344555543 25
Q ss_pred ceEEecC
Q 038893 122 VYFVVNR 128 (235)
Q Consensus 122 ~if~~~~ 128 (235)
+.|.+.|
T Consensus 85 v~L~V~R 91 (113)
T 3soe_A 85 VPLLILR 91 (113)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6666666
No 341
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=51.89 E-value=1.7 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=20.3
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|+|..|++.|.... ....-...+.|+.|+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 65 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 65 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSC
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcch
Confidence 4699999999986650 0001123478999975
No 342
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.71 E-value=13 Score=25.14 Aligned_cols=31 Identities=32% Similarity=0.998 Sum_probs=18.4
Q ss_pred EEcCCCceEEeCC---CCCCCCCC-CCCCCCCCCC
Q 038893 161 HICLDCGYIYFLQ---KPFDELPD-TYVCPQCQAP 191 (235)
Q Consensus 161 y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a~ 191 (235)
-.|..|...|-.. -+..++|+ +|.||.|...
T Consensus 22 l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 22 LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4566665554333 13445554 8999999654
No 343
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=51.05 E-value=6.6 Score=21.71 Aligned_cols=13 Identities=15% Similarity=0.375 Sum_probs=11.1
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||+.|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 5999999998854
No 344
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=51.01 E-value=7.1 Score=27.07 Aligned_cols=25 Identities=32% Similarity=0.999 Sum_probs=18.6
Q ss_pred EcCCCceEEeCCCCCCCCCCCCCCCCCCCC-ccCee
Q 038893 162 ICLDCGYIYFLQKPFDELPDTYVCPQCQAP-KKRFA 196 (235)
Q Consensus 162 ~C~~CGyvyd~~tpfe~lped~~CP~C~a~-k~~F~ 196 (235)
-|..|.++-..+ .||.|+.. .+.|.
T Consensus 3 AC~~C~~v~~~~----------~CpnC~~~tt~~~~ 28 (59)
T 3lpe_B 3 ACLKCKYLTNDE----------ICPICHSPTSENWI 28 (59)
T ss_dssp EETTTCBEESSS----------BCTTTCCBEESCEE
T ss_pred ccccCCcccCCC----------CCCCCCCCccCCEe
Confidence 599999998552 69999863 55555
No 345
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.00 E-value=14 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=12.5
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|.|..||+.|.-.
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCS 25 (46)
T ss_dssp CCEECSSSCCEESSS
T ss_pred CCEECcCCCCcCCCH
Confidence 359999999998765
No 346
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=50.86 E-value=5.2 Score=27.63 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=23.7
Q ss_pred eEEcCCCceEEeCC---CCCCCCC-CCCCCCCCCCCccCee
Q 038893 160 THICLDCGYIYFLQ---KPFDELP-DTYVCPQCQAPKKRFA 196 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lp-ed~~CP~C~a~k~~F~ 196 (235)
.-.|..|...|-.. -+..++| .+|.||.|...+.+..
T Consensus 20 ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~ 60 (66)
T 1xwh_A 20 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60 (66)
T ss_dssp CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCC
T ss_pred EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccC
Confidence 45777787776544 1344555 4899999966555443
No 347
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.13 E-value=7.4 Score=21.72 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=11.2
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2els_A 8 KIFTCEYCNKVFKF 21 (36)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEECCCCCceeCC
Confidence 36999999988853
No 348
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.01 E-value=7 Score=21.43 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=10.9
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 5999999998854
No 349
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=55.41 E-value=3.4 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.3
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||+.+..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4889999988755
No 350
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.58 E-value=1.3 Score=26.88 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=11.4
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 12 PYKCMECGKAFGDN 25 (46)
T ss_dssp SSSBTTTTBCCSSH
T ss_pred CcCCCCCCchhCCH
Confidence 58999999887654
No 351
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=49.51 E-value=2 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=19.8
Q ss_pred ceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|.|..|+..|.... ....-...+.|+.|+.
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 70 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70 (90)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence 4589999998886640 0000112468999975
No 352
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=49.43 E-value=5 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=18.4
Q ss_pred cceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
...|.|..|+..|.... ....-...|.|+.|+.
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 102 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCC
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccc
Confidence 34578888887776650 0001112367888864
No 353
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.39 E-value=7.2 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=11.4
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 35999999998854
No 354
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.34 E-value=8.4 Score=40.19 Aligned_cols=31 Identities=29% Similarity=0.654 Sum_probs=20.9
Q ss_pred eEEcCCCceEEeCC----CCCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ----KPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~----tpfe~lped~~CP~C~a~ 191 (235)
-|+|+.|-|...-. ..-=|+|+ ..||.|+.+
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~-k~cp~cg~~ 536 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPD-KNCPRCGTK 536 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCC-CBCTTTCCB
T ss_pred cccCccccccccccccccccccCCcc-ccCcccccc
Confidence 49999999854322 11125666 599999874
No 355
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.28 E-value=7.3 Score=21.74 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=11.4
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 8 LLYDCHICERKFKN 21 (36)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 36999999998854
No 356
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.26 E-value=11 Score=33.96 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=18.5
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCc
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQAPK 192 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k 192 (235)
...|..||+.+.- ....||.|+..+
T Consensus 208 ~l~Cs~C~t~W~~--------~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 208 YLSCSLCACEWHY--------VRIKCSHCEESK 232 (309)
T ss_dssp EEEETTTCCEEEC--------CTTSCSSSCCCS
T ss_pred EEEeCCCCCEEee--------cCcCCcCCCCCC
Confidence 3499999977744 246899998864
No 357
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.18 E-value=11 Score=24.28 Aligned_cols=31 Identities=32% Similarity=0.832 Sum_probs=20.4
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a 190 (235)
.-.|..|...|-.. -+..++|+ +|.||.|..
T Consensus 15 ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 15 LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred EEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 46788888666332 13455664 899999954
No 358
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=49.00 E-value=9.6 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.7
Q ss_pred cceEEcCCCceEEe
Q 038893 158 RATHICLDCGYIYF 171 (235)
Q Consensus 158 ~~~y~C~~CGyvyd 171 (235)
...|+|..||.+..
T Consensus 4 ~~fY~C~~CGnive 17 (36)
T 1dxg_A 4 GDVYKCELCGQVVK 17 (36)
T ss_dssp TCEEECTTTCCEEE
T ss_pred ccEEEcCCCCcEEE
Confidence 56799999998775
No 359
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.95 E-value=7.4 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=11.5
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..+..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 35999999998854
No 360
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.61 E-value=13 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=19.1
Q ss_pred ceEEcC--CCceEEeCC------CCCCCCCCCCCCCCC
Q 038893 159 ATHICL--DCGYIYFLQ------KPFDELPDTYVCPQC 188 (235)
Q Consensus 159 ~~y~C~--~CGyvyd~~------tpfe~lped~~CP~C 188 (235)
..|+|. .||+.|... .....-...+.|+.|
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 48 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG 48 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 369998 899988764 111112234788887
No 361
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=48.43 E-value=15 Score=27.69 Aligned_cols=32 Identities=31% Similarity=0.639 Sum_probs=22.1
Q ss_pred EEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeecc
Q 038893 161 HICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYD 199 (235)
Q Consensus 161 y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~~ 199 (235)
|+|. |++.--. ++.+|. ..|+.|+..+ |+...
T Consensus 49 FkC~-C~~Rt~s---l~r~P~-~~C~~Cg~~~--wer~~ 80 (92)
T 2kwq_A 49 FKCP-CGNRTIS---LDRLPK-KHCSTCGLFK--WERVG 80 (92)
T ss_dssp EECT-TSCEEEE---SSSSCC-SCCTTTCSCC--CEEEC
T ss_pred EECC-CCCceeE---eeeCCC-CCCCCCCCCc--eEEee
Confidence 5776 7766533 356776 4899998875 88753
No 362
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.16 E-value=11 Score=22.22 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (45)
T 2epu_A 11 KPFECTHCGKSFRAK 25 (45)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCccCCCCCCccCCh
Confidence 369999999998764
No 363
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.13 E-value=9.6 Score=21.65 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.3
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 8 HLYYCSQCHYSSIT 21 (37)
T ss_dssp CEEECSSSSCEEEC
T ss_pred cCeECCCCCcccCC
Confidence 36999999988854
No 364
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=47.82 E-value=16 Score=26.71 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=19.3
Q ss_pred cceEEcCCCceEEeCCCCCC-CCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFD-ELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe-~lped~~CP~C~a~k~ 193 (235)
...|+|++|.+-=.-...|+ +...--.|-.||...+
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 45799999994321111111 1122235888887554
No 365
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.44 E-value=1.4 Score=26.66 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=11.2
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|.-.
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 12 PYQCSECGKSFSGS 25 (46)
T ss_dssp TTCCSSSCCCCSSH
T ss_pred CeeCCCCCcccCCH
Confidence 58999999887654
No 366
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=47.28 E-value=6.8 Score=34.79 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=20.6
Q ss_pred cceEEcCCCceEEeCCC-----CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQK-----PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t-----pfe~lped~~CP~C~a 190 (235)
....+|..|++.|+.+. .-+.+| .||.|+.
T Consensus 137 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P---~C~~Cgg 171 (285)
T 3glr_A 137 FASATCTVCQRPFPGEDIRADVMADRVP---RCPVCTG 171 (285)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCC---BCTTTCC
T ss_pred CCeEEECCCCCcCCHHHHHHHhhcCCCC---CCCCCCC
Confidence 45679999999998642 112233 6999975
No 367
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=47.24 E-value=4 Score=37.25 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=0.0
Q ss_pred EEEEeecchHHHHhcCCcCcce
Q 038893 70 VITAVEGGGNAAKAGLKSGDQV 91 (235)
Q Consensus 70 yIa~~isG~~a~~~Gi~~gD~i 91 (235)
+|..+.+|+.|+++|++.||+|
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~I 339 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRI 339 (388)
T ss_dssp ----------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEE
Confidence 8999999999999999999964
No 368
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.78 E-value=22 Score=26.35 Aligned_cols=32 Identities=19% Similarity=0.748 Sum_probs=21.7
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a~ 191 (235)
.-.|..|...|=-. -+.+++|+ +|.||.|...
T Consensus 37 LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 37 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 56788887777544 14455554 8999999653
No 369
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.74 E-value=8.4 Score=21.62 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=11.4
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 8 RAMKCPYCDFYFMK 21 (37)
T ss_dssp CCEECSSSSCEECS
T ss_pred CCeECCCCChhhcc
Confidence 35999999998854
No 370
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=46.12 E-value=4.7 Score=20.78 Aligned_cols=11 Identities=18% Similarity=0.337 Sum_probs=7.8
Q ss_pred EEcCCCceEEe
Q 038893 161 HICLDCGYIYF 171 (235)
Q Consensus 161 y~C~~CGyvyd 171 (235)
|+|..||..+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67888877664
No 371
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=45.69 E-value=4.7 Score=21.00 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=9.1
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3788888877643
No 372
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.39 E-value=11 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=10.4
Q ss_pred cccceEEcCCCceEEeC
Q 038893 156 KARATHICLDCGYIYFL 172 (235)
Q Consensus 156 ~~~~~y~C~~CGyvyd~ 172 (235)
....+|+|..||+++-+
T Consensus 49 ~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 49 ISTGIWQCQKCGATFAG 65 (83)
T ss_dssp EETTEEEETTTCCEEEC
T ss_pred cCcCeEEcCCCCCEEeC
Confidence 33456777777766655
No 373
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=45.04 E-value=13 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.5
Q ss_pred cceEEcCCCceEEeC
Q 038893 158 RATHICLDCGYIYFL 172 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~ 172 (235)
..+|.|..||+++-+
T Consensus 52 ~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 52 VGIWGCKDCGKVKAG 66 (92)
T ss_dssp TTEEECSSSCCEEEC
T ss_pred cceEEcCCCCCEEeC
Confidence 445666666655544
No 374
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=44.97 E-value=11 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=21.3
Q ss_pred cceEEcCCCceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
...|+|..||..|.-.. ... ...+.|+.|+.
T Consensus 72 ~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k 108 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKK 108 (129)
T ss_dssp HCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCC
T ss_pred CCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCc
Confidence 34699999999986540 111 23479999975
No 375
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.53 E-value=12 Score=26.61 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.9
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|..
T Consensus 19 ~~~C~~C~k~f~~ 31 (115)
T 2dmi_A 19 KFRCKDCSAAYDT 31 (115)
T ss_dssp SEEBSSSSCEESS
T ss_pred CEECCccCchhcC
Confidence 3555555555543
No 376
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=44.46 E-value=12 Score=27.58 Aligned_cols=16 Identities=13% Similarity=0.359 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 038893 175 PFDELPDTYVCPQCQA 190 (235)
Q Consensus 175 pfe~lped~~CP~C~a 190 (235)
.+.++|+++.||+|..
T Consensus 15 ~~~~~p~~~~CpI~~~ 30 (98)
T 1wgm_A 15 TYADACDEFLDPIMST 30 (98)
T ss_dssp CCCSCCTTTBCTTTCS
T ss_pred hhhcCcHhcCCcCccc
Confidence 4456677777777743
No 377
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=44.11 E-value=15 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.1
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
...|.|..|.+.=.. +...|-.|+++|.
T Consensus 63 ~g~W~C~~C~~~N~a--------~~~~C~~C~~pkp 90 (92)
T 3gj8_B 63 EGSWDCEVCLVQNKA--------DSTKCIACESAKP 90 (92)
T ss_dssp -CCEECTTTCCEECS--------SCSBCTTTCCBCC
T ss_pred CCcccCCcCCcCChh--------hcccccccCCCCC
Confidence 457999999988755 3568999999875
No 378
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=43.62 E-value=20 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.614 Sum_probs=21.4
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a~ 191 (235)
.-.|..|...|-.. -+..++|+ +|.||.|...
T Consensus 19 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 19 LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45788888777544 13445554 7999999664
No 379
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.55 E-value=3.2 Score=28.20 Aligned_cols=12 Identities=33% Similarity=0.946 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCC
Q 038893 180 PDTYVCPQCQAP 191 (235)
Q Consensus 180 ped~~CP~C~a~ 191 (235)
++.|.||.|...
T Consensus 47 ~~~~~C~~C~~k 58 (64)
T 1we9_A 47 IKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCHHHHTT
T ss_pred CCcEECCCCcCc
Confidence 578999999543
No 380
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.01 E-value=7.1 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.3
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elo_A 8 RSYSCPVCEKSFSE 21 (37)
T ss_dssp CCCEETTTTEECSS
T ss_pred CCcCCCCCCCccCC
Confidence 35999999998754
No 381
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=42.76 E-value=4.9 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=8.8
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3678888876643
No 382
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=48.75 E-value=5.2 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=10.3
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2lvt_A 2 PCQCVMCGKAFTQ 14 (29)
Confidence 4889999988754
No 383
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.30 E-value=3.9 Score=40.56 Aligned_cols=34 Identities=26% Similarity=0.579 Sum_probs=26.5
Q ss_pred ccceE-EcCCCceEEeCC--CCCCCCCCCCCCCCCCCCc
Q 038893 157 ARATH-ICLDCGYIYFLQ--KPFDELPDTYVCPQCQAPK 192 (235)
Q Consensus 157 ~~~~y-~C~~CGyvyd~~--tpfe~lped~~CP~C~a~k 192 (235)
.|..| .|+.|-..|..- ..|+..|. .||.||=.-
T Consensus 63 sM~~F~mC~~C~~EY~dp~dRRfHAqp~--aCp~CGP~l 99 (657)
T 3ttc_A 63 VMAAFPLCPACDKEYRDPLDRRFHAQPV--ACPECGPYL 99 (657)
T ss_dssp GGGGSCCCHHHHHHHHCTTSTTTTCTTC--CCTTTSCCE
T ss_pred cccCCCCChHHHHHhCCCCCCcCcCCCC--cCcccCccc
Confidence 35556 899999888664 68999999 999997543
No 384
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.15 E-value=11 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.478 Sum_probs=11.8
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 11 KPYKCQVCGKAFRVS 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cccCCCCCCcccCcH
Confidence 359999999887664
No 385
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.12 E-value=5.5 Score=33.35 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=17.5
Q ss_pred EcCCCceEEeCCC---CCCCCCCCCCCCCCCCCcc
Q 038893 162 ICLDCGYIYFLQK---PFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 162 ~C~~CGyvyd~~t---pfe~lped~~CP~C~a~k~ 193 (235)
++..|||+|+... -+..- ...||.|+.+-.
T Consensus 222 v~~~~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~ 254 (281)
T 2c2l_A 222 CITPSGITYDRKDIEEHLQRV--GHFNPVTRSPLT 254 (281)
T ss_dssp EECSSCCEEETTHHHHHHHHT--CSSCTTTCCCCC
T ss_pred eECCCCCEECHHHHHHHHHHC--CCCCcCCCCCCc
Confidence 4455888888861 11111 225999987643
No 386
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.05 E-value=11 Score=25.07 Aligned_cols=15 Identities=20% Similarity=0.385 Sum_probs=11.7
Q ss_pred cceEEcCCCceEEeC
Q 038893 158 RATHICLDCGYIYFL 172 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~ 172 (235)
...|+|..|||.+.+
T Consensus 41 T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 41 TIFYKCTKCGHTWRS 55 (57)
T ss_dssp EEEEEESSSCCEEEC
T ss_pred cEEEEcCCCCCEecc
Confidence 346899999998765
No 387
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=47.97 E-value=5.4 Score=20.92 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=9.7
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4788888877754
No 388
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=41.83 E-value=22 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.648 Sum_probs=22.3
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCCCc
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQAPK 192 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a~k 192 (235)
.-.|..|...|-.. -+.+.+|+ +|.||.|...+
T Consensus 16 ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 16 LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46788888777554 13445554 79999997644
No 389
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=41.80 E-value=5.3 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=9.1
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3778888877643
No 390
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=40.57 E-value=11 Score=23.03 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.5
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|.-
T Consensus 6 kp~~C~~C~k~F~~ 19 (48)
T 3iuf_A 6 KPYACDICGKRYKN 19 (48)
T ss_dssp SCEECTTTCCEESS
T ss_pred cCEECCCcCcccCC
Confidence 35999999988854
No 391
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=40.38 E-value=4.2 Score=40.90 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=22.1
Q ss_pred cceE-EcCCCceEEeCC--CCCCCCCCCCCCCCCCC
Q 038893 158 RATH-ICLDCGYIYFLQ--KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y-~C~~CGyvyd~~--tpfe~lped~~CP~C~a 190 (235)
|+.+ .|+.|-..|..- ..|+..|. .||.||=
T Consensus 153 M~~F~mC~~C~~EY~dp~dRRfhAqp~--aC~~CGP 186 (772)
T 4g9i_A 153 MKEFPMCDFCRSEYEDPLNRRYHAEPT--ACPVCGP 186 (772)
T ss_dssp GGGSCCCHHHHHHHHCSSSTTTTCTTC--CCTTTSC
T ss_pred CCCCCCChhHHHHhCCCCCCCCcCCCC--CCccCCc
Confidence 4444 677777666432 58999998 9999964
No 392
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.13 E-value=6.5 Score=21.83 Aligned_cols=14 Identities=36% Similarity=0.690 Sum_probs=10.9
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 35999999987743
No 393
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=39.85 E-value=16 Score=25.91 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCCC
Q 038893 175 PFDELPDTYVCPQCQA 190 (235)
Q Consensus 175 pfe~lped~~CP~C~a 190 (235)
.+.++|+++.||+|..
T Consensus 7 ~~~~~p~~~~CpI~~~ 22 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDT 22 (85)
T ss_dssp CCTTCCTTTBCTTTCS
T ss_pred hhhcCchheECcccCc
Confidence 4556788888888855
No 394
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.68 E-value=19 Score=26.51 Aligned_cols=31 Identities=29% Similarity=0.772 Sum_probs=19.1
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC-CCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD-TYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe-d~~CP~C~a 190 (235)
.-.|..|...|-.. -|..++|+ +|.||.|..
T Consensus 31 ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 31 LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred EEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 35666666555333 13456665 899999944
No 395
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=39.64 E-value=7.3 Score=30.47 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=10.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.+...
T Consensus 48 ~~~~C~~C~~~f~~~ 62 (190)
T 2i13_A 48 KPYKCPECGKSFSDK 62 (190)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCccCCCcCchhCCH
Confidence 357777777777554
No 396
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=39.34 E-value=13 Score=21.24 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=11.5
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..+...
T Consensus 6 ~~~C~~C~k~f~~~ 19 (39)
T 1njq_A 6 SYTCSFCKREFRSA 19 (39)
T ss_dssp SEECTTTCCEESSH
T ss_pred ceECCCCCcccCCH
Confidence 59999999988653
No 397
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=39.13 E-value=4.9 Score=40.47 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=18.4
Q ss_pred EcCCCceEEeCC--CCCCCCCCCCCCCCCCC
Q 038893 162 ICLDCGYIYFLQ--KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 162 ~C~~CGyvyd~~--tpfe~lped~~CP~C~a 190 (235)
.|+.|-..|..- ..|+..|. .||.||=
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~--aC~~CGP 191 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPV--ACFDCGP 191 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTC--CCTTTSC
T ss_pred CCHHHHHHhcCcccccccCCCC--cCCccCC
Confidence 455555445432 58888888 9999965
No 398
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=39.02 E-value=6.8 Score=21.95 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=10.8
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 35999999987743
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.79 E-value=22 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=20.4
Q ss_pred cccceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 156 KARATHICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 156 ~~~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
+...++.|+.||.+|.-. +.||.|+.+
T Consensus 120 Rl~~R~~~~~~g~~y~~~---------~~pp~~g~~ 146 (206)
T 3sr0_A 120 RLSGRRINPETGEVYHVK---------YNPPPPGVK 146 (206)
T ss_dssp HHHTEEECTTTCCEEETT---------TBCCCTTCC
T ss_pred HHhCCccccCCCceeeee---------ccCCCCCce
Confidence 345689999999999873 467778654
No 400
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.62 E-value=15 Score=38.01 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=21.3
Q ss_pred ceEEcCCCceEEeCCC--CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK--PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t--pfe~lped~~CP~C~a 190 (235)
..|.|+.||+.|.+.+ -|.-....=.||.|..
T Consensus 266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G 299 (972)
T 2r6f_A 266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDG 299 (972)
T ss_dssp SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTS
T ss_pred ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcC
Confidence 4589999999997762 2332222338999953
No 401
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=38.05 E-value=6.8 Score=20.59 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=9.0
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|.|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 3778888877643
No 402
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.95 E-value=37 Score=24.23 Aligned_cols=30 Identities=30% Similarity=1.009 Sum_probs=18.4
Q ss_pred EEcCCCceEEeCC---CCCCCCCC--CCCCCCCCC
Q 038893 161 HICLDCGYIYFLQ---KPFDELPD--TYVCPQCQA 190 (235)
Q Consensus 161 y~C~~CGyvyd~~---tpfe~lpe--d~~CP~C~a 190 (235)
-.|..|...|--. -|..++|+ +|.||.|..
T Consensus 42 l~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 42 LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp EECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred EEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3455555444333 24667777 599999954
No 403
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=37.58 E-value=21 Score=26.90 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=7.1
Q ss_pred cceEEcCCCceEEeC
Q 038893 158 RATHICLDCGYIYFL 172 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~ 172 (235)
..+|.|..|++++-+
T Consensus 52 ~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 52 AGIWTCSCCKKTVAG 66 (92)
T ss_dssp TTEEECTTTCCEEEC
T ss_pred cceEEcCCCCCEEeC
Confidence 334555555544443
No 404
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=37.52 E-value=5.9 Score=34.99 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCeeeccC
Q 038893 161 HICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFARYDV 200 (235)
Q Consensus 161 y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~~~~~ 200 (235)
.-|+.||...-...+=-..-.|+-||.|.. +|+....
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~E---eyELKSk 71 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSE---EFELKSK 71 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCC---EEEEEEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcch---hheeccc
Confidence 469999974332111112234689999964 5665444
No 405
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.35 E-value=13 Score=29.21 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=5.7
Q ss_pred ceEEcCCCce
Q 038893 159 ATHICLDCGY 168 (235)
Q Consensus 159 ~~y~C~~CGy 168 (235)
..|.|+.||.
T Consensus 59 akytCPfCGk 68 (116)
T 3cc2_Z 59 EDHACPNCGE 68 (116)
T ss_dssp SCEECSSSCC
T ss_pred cCCcCCCCCC
Confidence 3466666664
No 406
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.28 E-value=14 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=12.0
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (44)
T 2epv_A 11 KPYECNECGKAFIWK 25 (44)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCcccCch
Confidence 369999999988653
No 407
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.33 E-value=11 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.427 Sum_probs=21.6
Q ss_pred cceEEcCCCceEE-eCC--------CCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIY-FLQ--------KPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 158 ~~~y~C~~CGyvy-d~~--------tpfe~lped~~CP~C~a~ 191 (235)
...|.|..||..| .-. +- .+ ..+.|+.|+..
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~--k~~~C~~Cgk~ 71 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQ--EMFTCHHCGKQ 71 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHHHHHHHH-CC--CCCCCSSSCCC
T ss_pred CCCcCCCCCCCCcccCHHHHHHHHHHH-CC--CCeECCCCCCe
Confidence 4469999999999 443 12 22 35799999753
No 408
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=36.24 E-value=15 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.6
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.+..
T Consensus 10 ~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 10 TPYLCGQCGKSFTQ 23 (42)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 35999999998865
No 409
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=36.15 E-value=14 Score=22.84 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=11.7
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|.|..||..|..
T Consensus 23 k~~~C~~C~k~f~~ 36 (54)
T 1yui_A 23 QPATCPICYAVIRQ 36 (54)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCccCCCCCcccCC
Confidence 46999999998854
No 410
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=35.98 E-value=7.9 Score=33.73 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=21.0
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCe
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRF 195 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F 195 (235)
.....|+.||..-+. ..|++|..++.+-
T Consensus 52 ~~i~~C~~C~nlte~----------~~C~IC~d~~Rd~ 79 (228)
T 1vdd_A 52 RDLHVCPICFNITDA----------EKCDVCADPSRDQ 79 (228)
T ss_dssp HHCEECSSSCCEESS----------SSCHHHHCSSSCT
T ss_pred hcCeEcCCCCCCcCC----------CcCCCCCCCCcCC
Confidence 457899999998543 2799997765553
No 411
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=35.72 E-value=22 Score=26.30 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=7.1
Q ss_pred ceEEcCCCceE
Q 038893 159 ATHICLDCGYI 169 (235)
Q Consensus 159 ~~y~C~~CGyv 169 (235)
..+.|+.|+|.
T Consensus 22 t~F~CPfCnh~ 32 (85)
T 1wii_A 22 TQFTCPFCNHE 32 (85)
T ss_dssp SCCCCTTTCCS
T ss_pred CeEcCCCCCCC
Confidence 45677777754
No 412
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=35.64 E-value=16 Score=27.46 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=21.0
Q ss_pred cceEEcCCCceEEeCC----------------CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQ----------------KPFDELPDTYVCPQCQ 189 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~----------------tpfe~lped~~CP~C~ 189 (235)
...+.|++|+-+|-.. +.-..-...|.||.|.
T Consensus 27 ~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 27 ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 3468999999887543 1111233479999994
No 413
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=35.53 E-value=29 Score=21.84 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHHHhHh
Q 038893 213 IGVIIGLIAGIGAVGALLVY 232 (235)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~ 232 (235)
.++++|.++|++.++.+.+|
T Consensus 14 AGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHH
Confidence 55667777887777666554
No 414
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.07 E-value=18 Score=20.68 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.8
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|.-.
T Consensus 9 k~~~C~~C~k~f~~~ 23 (41)
T 2ept_A 9 RVYECQECGKSFRQK 23 (41)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCCcCCH
Confidence 369999999888653
No 415
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.95 E-value=16 Score=21.57 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoz_A 11 KPYSCNVCGKAFVLS 25 (46)
T ss_dssp CSEEETTTTEEESSH
T ss_pred CCeECcccChhhCCH
Confidence 359999999998764
No 416
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.91 E-value=16 Score=20.97 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=11.5
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2en2_A 10 KPYKCETCGARFVQ 23 (42)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCEeCCCcChhhCC
Confidence 35999999998855
No 417
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.56 E-value=16 Score=21.10 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=12.2
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eof_A 11 KPYECNECQKAFNTK 25 (44)
T ss_dssp CSEECTTTCCEESCH
T ss_pred CCeECCCCCcccCCH
Confidence 359999999988664
No 418
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.51 E-value=17 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.5
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (44)
T 2eox_A 11 KSYNCNECGKAFTRI 25 (44)
T ss_dssp CCEEETTTTEEESSS
T ss_pred CCeECcccCcccCCH
Confidence 359999999998764
No 419
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.51 E-value=17 Score=21.38 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eow_A 11 KPYKCNECGKAFRAR 25 (46)
T ss_dssp CCEECTTSCCEESSH
T ss_pred CCeeccccCChhcCH
Confidence 359999999988664
No 420
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.23 E-value=17 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|.-.
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytp_A 11 RHYECSECGKAFARK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCcCCcccCCH
Confidence 369999999998764
No 421
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.13 E-value=17 Score=21.42 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=11.5
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|.-.
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 12 PYECDVCRKAFSHH 25 (46)
T ss_dssp SCBCTTTCCBCSSS
T ss_pred CcCCCCcCchhCCH
Confidence 58999999888665
No 422
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.03 E-value=14 Score=27.17 Aligned_cols=26 Identities=35% Similarity=0.814 Sum_probs=19.3
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccC
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKR 194 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~ 194 (235)
.+.|..|+--|... . .||.|+.+-..
T Consensus 18 ~~~C~~C~~~~~~~--------a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ--------A-LCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEE--------E-ECSSSCSCCCE
T ss_pred ceECccccccCCCc--------c-cCcchhhHHHH
Confidence 67899999988773 1 68888776544
No 423
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.75 E-value=17 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.2
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2emb_A 11 KRYECSKCQATFNLR 25 (44)
T ss_dssp SSEECTTTCCEESCH
T ss_pred CCeECCCCCCccCCH
Confidence 359999999988654
No 424
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.61 E-value=17 Score=21.27 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yts_A 11 KPYICNECGKSFIQK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCEECCCCChhhCCh
Confidence 359999999988664
No 425
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.60 E-value=18 Score=21.11 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=12.5
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQR 25 (44)
T ss_dssp CSEECSSSSCEESSS
T ss_pred CCeECCCCCchhCCH
Confidence 359999999998765
No 426
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=33.55 E-value=17 Score=21.42 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emj_A 11 KPFECAECGKSFSIS 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCEECCCCCcccCCH
Confidence 359999999998664
No 427
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.43 E-value=18 Score=21.32 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2emi_A 11 RHYECSECGKAFIQK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCCCCCCCCcccCCH
Confidence 359999999988664
No 428
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.29 E-value=18 Score=21.31 Aligned_cols=15 Identities=13% Similarity=0.292 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2em3_A 11 KPYECKVCSKAFTQK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCcccCCH
Confidence 359999999998664
No 429
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=33.00 E-value=9.5 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=17.7
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
...|.|+.||..--.. ..---|.|..|+.
T Consensus 24 ~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKR----GAAGIWTCSCCKK 52 (72)
T ss_dssp HSCBCCSSCCSSCBSB----CSSSCBCCSSSCC
T ss_pred ccCccCCCCCCceeEe----cCCCeEECCCCCC
Confidence 4578888888553221 1224588888854
No 430
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=32.91 E-value=29 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=22.0
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
...|.|..|-+.-.. +..+|-.|+.+|.
T Consensus 70 ~g~W~C~~C~~~N~~--------~~~~C~aC~tpkP 97 (98)
T 3gj7_B 70 IGTWDCDTCLVQNKP--------EAVKCVACETPKP 97 (98)
T ss_dssp -CCEECTTTCCEECT--------TCSBCTTTCCBCC
T ss_pred CCcccCCcCcCCChh--------hcceecccCCCCC
Confidence 457999999887766 4569999999874
No 431
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=32.86 E-value=18 Score=27.79 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=6.1
Q ss_pred ceEEcCCCceE
Q 038893 159 ATHICLDCGYI 169 (235)
Q Consensus 159 ~~y~C~~CGyv 169 (235)
..|.|+.||..
T Consensus 35 aky~CpfCgk~ 45 (103)
T 4a17_Y 35 AKYGCPFCGKV 45 (103)
T ss_dssp SCEECTTTCCE
T ss_pred cCCCCCCCCCc
Confidence 35666666643
No 432
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.77 E-value=18 Score=21.31 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yto_A 11 KPYKCSDCGKAFTRK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCEECcccCCccCCH
Confidence 369999999988664
No 433
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.68 E-value=18 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|.-.
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em4_A 11 RPYECIECGKAFKTK 25 (46)
T ss_dssp SSEECSSSCCEESSH
T ss_pred cCcCCCCCCCccCCH
Confidence 359999999988664
No 434
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.68 E-value=18 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||+.|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2yrj_A 11 KPYRCGECGKAFAQK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCccCCH
Confidence 359999999998764
No 435
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=32.60 E-value=28 Score=29.48 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.0
Q ss_pred cceEEcCCCceEEeCC
Q 038893 158 RATHICLDCGYIYFLQ 173 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~ 173 (235)
....+|..|+++|+-+
T Consensus 111 ~~~~~C~~C~~~~~~~ 126 (235)
T 1s5p_A 111 LLKVRCSQSGQVLDWT 126 (235)
T ss_dssp EEEEEETTTCCEEECC
T ss_pred ceEEEeCCCCCcccch
Confidence 4567999999999864
No 436
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.42 E-value=19 Score=21.12 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytf_A 11 KPFECSECQKAFNTK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcCCCCCCcccCCH
Confidence 359999999988664
No 437
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.22 E-value=18 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=8.5
Q ss_pred cceEEcCCCceEEeC
Q 038893 158 RATHICLDCGYIYFL 172 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~ 172 (235)
..+|.|..|++++-+
T Consensus 43 ~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 43 TSIWVCGHCGYKIAG 57 (73)
T ss_pred eEEEECCCCCcEEEC
Confidence 445666666666433
No 438
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=32.20 E-value=23 Score=34.12 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=25.1
Q ss_pred CCcEEEEEeecchHHHHhcCCcCcceeeec
Q 038893 66 GGGVVITAVEGGGNAAKAGLKSGDQVLYTS 95 (235)
Q Consensus 66 ~~~vyIa~~isG~~a~~~Gi~~gD~i~~~s 95 (235)
..++||..+.+|+.|+++ ++.||+|+.+.
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~id 304 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFD 304 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEET
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEEC
Confidence 468999999999999876 99999987653
No 439
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=31.99 E-value=37 Score=24.75 Aligned_cols=25 Identities=16% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~ 191 (235)
..+|-.|-.+..+. ...-||.||.+
T Consensus 15 iLrC~aCf~~t~~~-------~k~FCp~CGn~ 39 (79)
T 2con_A 15 ILRCHGCFKTTSDM-------NRVFCGHCGNK 39 (79)
T ss_dssp EEECSSSCCEESCS-------SCCSCSSSCCS
T ss_pred eeEecccceECCCc-------ccccccccCcc
Confidence 46999999999663 34589999885
No 440
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=31.91 E-value=20 Score=20.57 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2el5_A 9 NPYECSECGKAFNRK 23 (42)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCccCCCcChhhCCH
Confidence 359999999988654
No 441
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.90 E-value=19 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eor_A 11 KPYNCEECGKAFIHD 25 (46)
T ss_dssp CSEECTTTCCEESSH
T ss_pred cCccCCCCCCCcCCH
Confidence 359999999998654
No 442
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.89 E-value=31 Score=22.75 Aligned_cols=17 Identities=12% Similarity=0.610 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccCeeec
Q 038893 182 TYVCPQCQAPKKRFARY 198 (235)
Q Consensus 182 d~~CP~C~a~k~~F~~~ 198 (235)
+..||.|++.+..|...
T Consensus 9 ~~~Cp~Cg~~~a~f~q~ 25 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQV 25 (50)
T ss_dssp CSCCSSSCSSCEEEEEE
T ss_pred ccCCCCCCCCEEEEEEe
Confidence 45788888777777655
No 443
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=31.54 E-value=43 Score=23.28 Aligned_cols=31 Identities=23% Similarity=0.897 Sum_probs=19.7
Q ss_pred eEEcCCCceEEeCC---CCCCCCCC--CCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPD--TYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lpe--d~~CP~C~a 190 (235)
.-.|..|...|--. -|..++|+ +|.||.|..
T Consensus 33 ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 33 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 44666666555333 24556665 799999964
No 444
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=31.28 E-value=8.2 Score=30.89 Aligned_cols=74 Identities=16% Similarity=0.016 Sum_probs=41.7
Q ss_pred cccCCcccccCchhHHHHHHHhCCeeEEEEeecCccceeeeeecCCc-EEEEEeecch---HHHH---hcCCcCcceeee
Q 038893 22 AVSKTKNATRSLDNNKITARTAGASKTIEVEVDKPLGLTLGQKPGGG-VVITAVEGGG---NAAK---AGLKSGDQVLYT 94 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lA~~lg~~~~~~v~~~kplGl~~g~~~~~~-vyIa~~isG~---~a~~---~Gi~~gD~i~~~ 94 (235)
.+|.|....+..+.+.+||+++|+.+..+. .-.|. +..+ .|+ .|+..|..|. .... ..++..|.|..+
T Consensus 40 l~G~g~~~~~a~~~l~~lae~~~iPV~~t~---~gkg~-~~~~-hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~i 114 (170)
T 3cf4_G 40 MVGTLALDPELLDRVVKISKAANIPIAATG---SSLAV-LADK-DVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITI 114 (170)
T ss_dssp EECSTTCCHHHHHHHHHHHHHHTCCEEECT---TTHHH-HTTS-SSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEE
T ss_pred EECCCccchhHHHHHHHHHHHhCCCEEECc---ccCcc-cCCC-ChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEE
Confidence 347777666667889999999999984331 11111 1111 221 3322222121 1112 447889999988
Q ss_pred cccc--CC
Q 038893 95 SSFF--GD 100 (235)
Q Consensus 95 s~~f--G~ 100 (235)
.+.| .+
T Consensus 115 G~~~~~~~ 122 (170)
T 3cf4_G 115 GFKKFYIN 122 (170)
T ss_dssp SCCHHHHH
T ss_pred CCccCccc
Confidence 8887 54
No 445
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.15 E-value=20 Score=21.03 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.4
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 11 KPFQCKECGMNFSWS 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCcccChhhCCH
Confidence 359999999998764
No 446
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=31.12 E-value=25 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.761 Sum_probs=19.0
Q ss_pred eEEcCCCceEEeCC---CCCCCCC-CCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELP-DTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lp-ed~~CP~C~a 190 (235)
.-.|..|...|--. -+..++| .+|.||.|..
T Consensus 23 ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 23 IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45677777666333 1223444 4899999954
No 447
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.91 E-value=10 Score=21.08 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=8.9
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|.|..||..+..
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 3778888876643
No 448
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.84 E-value=19 Score=24.33 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=18.4
Q ss_pred CCCCcccccccchhhcccceEEcCCCceEEeC
Q 038893 141 RPAPPRFGRKLTEAQKARATHICLDCGYIYFL 172 (235)
Q Consensus 141 ~~a~~~f~~k~~~~~~~~~~y~C~~CGyvyd~ 172 (235)
+.-.|..+...--+ ....+|.|..|||++..
T Consensus 18 ~~fCPkCG~~~~ma-~~~dr~~C~kCgyt~~~ 48 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-EHADRYSCGRCGYTEFK 48 (55)
T ss_dssp SCCCTTTTTTCCCE-ECSSEEECTTTCCCEEC
T ss_pred cccCcCCCCceeEe-ccCCEEECCCCCCEEEe
Confidence 34455555322211 23468999999999854
No 449
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.29 E-value=20 Score=23.64 Aligned_cols=30 Identities=33% Similarity=1.042 Sum_probs=19.0
Q ss_pred eEEcCCCceEEeCC---CCCCCCC-CCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELP-DTYVCPQCQ 189 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lp-ed~~CP~C~ 189 (235)
.-.|..|...|-.. -+..++| .+|.||.|.
T Consensus 21 ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 21 LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred EEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45677777666444 1344455 489999883
No 450
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.14 E-value=35 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.775 Sum_probs=20.3
Q ss_pred eEEcCCCceEEeCC---CCCCCCC-CCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELP-DTYVCPQCQAP 191 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lp-ed~~CP~C~a~ 191 (235)
.-.|..|...|-.. -+..+.| .+|.||.|...
T Consensus 14 ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 14 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 34577777666444 1334444 48999999764
No 451
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.10 E-value=21 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=20.1
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
...|.|..|- |.++ .+.-+|..|+.+|.
T Consensus 29 ~GsWeC~~C~-V~N~-------a~~~kC~ACetpKP 56 (57)
T 2ebv_A 29 IGSWECSVCC-VSNN-------AEDNKCVSCMSEKP 56 (57)
T ss_dssp SSSCCCSSSC-CCCC-------SSCSBCSSSCCBCC
T ss_pred CCeeeCCeeE-ccCc-------cCCceeeEcCCcCC
Confidence 4579999994 4433 24558999998874
No 452
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=29.93 E-value=34 Score=21.35 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEcCCCceEEeCC--CCCCCCCCCCCCCCCCCC
Q 038893 161 HICLDCGYIYFLQ--KPFDELPDTYVCPQCQAP 191 (235)
Q Consensus 161 y~C~~CGyvyd~~--tpfe~lped~~CP~C~a~ 191 (235)
...+.|||+|-.. ..|-.. ...||.|..+
T Consensus 22 ~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~ 52 (55)
T 1iym_A 22 RFLPRCGHGFHAECVDMWLGS--HSTCPLCRLT 52 (55)
T ss_dssp EECSSSCCEECTTHHHHTTTT--CCSCSSSCCC
T ss_pred EECCCCCCcccHHHHHHHHHc--CCcCcCCCCE
Confidence 3444689888766 222222 3489999764
No 453
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.84 E-value=17 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=19.4
Q ss_pred ceEEcCCCceEEeCC--------CCCCCCCCCCCCC-CCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFDELPDTYVCP-QCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe~lped~~CP-~C~a 190 (235)
..|.|..||+.+. . + -.+ ..+.|+ .|+.
T Consensus 9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~--~p~~C~~~C~k 45 (66)
T 2eod_A 9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPR--LPVACPNQCGV 45 (66)
T ss_dssp CEEECSSSCCEEE-HHHHHHHHHH-CSS--SEEECTTCCSC
T ss_pred CCeeccccCCccC-HHHHHHHHHH-cCC--cCccCCcccCc
Confidence 4699999998886 4 2 112 246899 9975
No 454
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.39 E-value=16 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=12.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eoj_A 11 NPYECCECGKVFSRK 25 (44)
T ss_dssp CSCEETTTTEECSSH
T ss_pred cCeeCCCCCCccCCH
Confidence 359999999988664
No 455
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=29.19 E-value=38 Score=32.49 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=20.8
Q ss_pred cceEEcCC--CceEEeCCC--CC-CCCCCCCCCCCCCCC
Q 038893 158 RATHICLD--CGYIYFLQK--PF-DELPDTYVCPQCQAP 191 (235)
Q Consensus 158 ~~~y~C~~--CGyvyd~~t--pf-e~lped~~CP~C~a~ 191 (235)
...|+|.. ||+...-.. .. ........||.|+..
T Consensus 133 ~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~ 171 (595)
T 3f9v_A 133 KATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 171 (595)
T ss_dssp ECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred EEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC
Confidence 45799999 997654220 11 123334589999863
No 456
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=29.08 E-value=17 Score=35.01 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred cceEEcCCCceEEeCCCCCC----CCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFD----ELPDTYVCPQCQ 189 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe----~lped~~CP~C~ 189 (235)
....+|..||+.|+.+.-++ ..+. .||.|+
T Consensus 297 l~~~~C~~Cg~~~~~e~i~~~i~~~~~P--~Cp~Cg 330 (492)
T 4iao_A 297 FATATCVTCHWNLPGERIFNKIRNLELP--LCPYCY 330 (492)
T ss_dssp TTEEEETTTCCEEEGGGGHHHHHTTCCC--BCTTTH
T ss_pred cceeecCCCCCcCCHHHHHHHHhccCCC--CCcccc
Confidence 45689999999998642111 1122 699996
No 457
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.78 E-value=16 Score=24.95 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=10.5
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|.|..|+..|.-.
T Consensus 25 ~~~C~~C~k~f~~~ 38 (95)
T 2ej4_A 25 SRPKKSCDRTFSTM 38 (95)
T ss_dssp SSSCCCCCCCCSSH
T ss_pred CCcccccccccCCH
Confidence 46699999887654
No 458
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=28.75 E-value=21 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=9.1
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|.-.
T Consensus 78 ~~~C~~C~k~F~~~ 91 (133)
T 2lt7_A 78 RYQCLACGKSFINY 91 (133)
T ss_dssp CEEESSSCCEESSH
T ss_pred cccCCCCCCCcCCH
Confidence 47777777666544
No 459
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.74 E-value=28 Score=22.51 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=20.3
Q ss_pred cceEEcC--CCceEEeCCCCCCCCCCCCCCCCCCCCcc
Q 038893 158 RATHICL--DCGYIYFLQKPFDELPDTYVCPQCQAPKK 193 (235)
Q Consensus 158 ~~~y~C~--~CGyvyd~~tpfe~lped~~CP~C~a~k~ 193 (235)
..-|.|+ .||.+=.. ....|-.|++++.
T Consensus 12 ~GDW~C~~~~C~~~Nfa--------~R~~C~~C~~pr~ 41 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFA--------RRTSCDRCGREKT 41 (45)
T ss_dssp SSSCBCSSTTTCCBCCS--------SCSBCSSSCCBCC
T ss_pred CCCcCCCCCCCCCEEcc--------ccccccccCCcCC
Confidence 3469999 89987433 2348999998864
No 460
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.52 E-value=9.6 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.527 Sum_probs=19.7
Q ss_pred ceEEcCC--CceEEeCCC------CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLD--CGYIYFLQK------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~--CGyvyd~~t------pfe~lped~~CP~C~a 190 (235)
..|+|.. |++.+.... ....-...+.|+.|+.
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k 76 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence 4699998 998886540 0000113478999974
No 461
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=28.16 E-value=19 Score=36.98 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred ceEEcCCCceEEeCCC--CCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQK--PFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~t--pfe~lped~~CP~C~a 190 (235)
..|.|+.||+.|.+-+ -|.-....-.||.|..
T Consensus 248 ~~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G 281 (916)
T 3pih_A 248 ENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHG 281 (916)
T ss_dssp SSCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTT
T ss_pred ccccCcccCCccCCCCHhhcCCCCCCCcCCeeec
Confidence 4578999999987752 2332222348999944
No 462
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=28.11 E-value=6.8 Score=21.60 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=8.8
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.|+|..||..+..
T Consensus 2 p~~C~~C~k~f~~ 14 (32)
T 2kfq_A 2 AFACPACPKRFMR 14 (32)
T ss_dssp CSSSSSSCTTHHH
T ss_pred CCCCCCCCcccCC
Confidence 3778888866543
No 463
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=28.07 E-value=23 Score=30.80 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=12.7
Q ss_pred ccceEEcCCCceEEeC
Q 038893 157 ARATHICLDCGYIYFL 172 (235)
Q Consensus 157 ~~~~y~C~~CGyvyd~ 172 (235)
.....+|..|++.|+.
T Consensus 131 ~~~~~~C~~C~~~~~~ 146 (273)
T 3riy_A 131 SLFKTRCTSCGVVAEN 146 (273)
T ss_dssp EEEEEEETTTCCEEEC
T ss_pred cCCeeEcCCCCCcccc
Confidence 3456899999999964
No 464
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=28.01 E-value=25 Score=25.92 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 038893 175 PFDELPDTYVCPQCQAP 191 (235)
Q Consensus 175 pfe~lped~~CP~C~a~ 191 (235)
...++|+++.||+|...
T Consensus 22 ~~~~~p~~~~CpI~~~~ 38 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTL 38 (100)
T ss_dssp SCSSCSTTTBCTTTCSB
T ss_pred hhccCcHhhCCcCccCc
Confidence 44678899999999653
No 465
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.93 E-value=24 Score=21.51 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.4
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..|++.|.-
T Consensus 31 ~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQ 44 (57)
T ss_dssp CCEECSSSSCEESS
T ss_pred CCcCCCCCcchhCC
Confidence 46999999998853
No 466
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=27.80 E-value=17 Score=32.65 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=20.1
Q ss_pred cceEEcCC--CceEEeCCC-----CCCCCCCCCCCCCCCC
Q 038893 158 RATHICLD--CGYIYFLQK-----PFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~--CGyvyd~~t-----pfe~lped~~CP~C~a 190 (235)
....+|.. |++.|+.+. +-+.+| +||.|+.
T Consensus 157 ~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P---~C~~Cgg 193 (323)
T 1j8f_A 157 FYTSHCVSASCRHEYPLSWMKEKIFSEVTP---KCEDCQS 193 (323)
T ss_dssp EEEEEESCTTTCCEECHHHHHHHHHTTCCC---BCTTTCC
T ss_pred cceeecCCCccCccccHHHHHHhhccCCCC---CCcCCCC
Confidence 45689999 999996431 011233 6999976
No 467
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=27.79 E-value=28 Score=31.98 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=19.2
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
.-.|.|..||+.+.... +..+ ...||.|+.
T Consensus 242 g~v~~C~~C~~~~~~~~-~~~~--~~~C~~cg~ 271 (392)
T 3axs_A 242 GYIQYCFNCMNREVVTD-LYKF--KEKCPHCGS 271 (392)
T ss_dssp EEEEECTTTCCEEEECC-GGGC--CSBCTTTCS
T ss_pred ceEEECCCCCCeEeecC-CCCC--CCcCCCCCC
Confidence 45789999997654210 1122 348999975
No 468
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=27.67 E-value=62 Score=21.57 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.4
Q ss_pred CCCCCCCCCCc
Q 038893 182 TYVCPQCQAPK 192 (235)
Q Consensus 182 d~~CP~C~a~k 192 (235)
...||.|..+-
T Consensus 53 ~~~CP~Cr~~~ 63 (79)
T 2egp_A 53 KSSCPVCGISY 63 (79)
T ss_dssp CCCCSSSCCCC
T ss_pred CCcCCCCCCcC
Confidence 45899998753
No 469
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=27.49 E-value=22 Score=25.40 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=8.5
Q ss_pred eEEcCC--CceEEeCC
Q 038893 160 THICLD--CGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~--CGyvyd~~ 173 (235)
.|.|.. |++.|...
T Consensus 62 ~~~C~~~~C~~~f~~~ 77 (124)
T 1ubd_C 62 PFQCTFEGCGKRFSLD 77 (124)
T ss_dssp CEECCSTTCCCEESCH
T ss_pred CeeCCCCCCcCccCCH
Confidence 467764 77666543
No 470
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=27.37 E-value=27 Score=25.49 Aligned_cols=14 Identities=36% Similarity=0.906 Sum_probs=11.8
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
...+|..||++|.-
T Consensus 55 ~~~RC~eCG~~fkL 68 (80)
T 2odx_A 55 EVARCWECGSVYKL 68 (80)
T ss_dssp CEEECSSSCCEEEE
T ss_pred CCeECCCCCeEEEE
Confidence 36899999999965
No 471
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.20 E-value=16 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 10 KPYPCEICGTRFRHL 24 (42)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCccCCH
Confidence 358999999887653
No 472
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=27.11 E-value=27 Score=23.23 Aligned_cols=15 Identities=20% Similarity=0.529 Sum_probs=10.0
Q ss_pred ceEEcC--CCceEEeCC
Q 038893 159 ATHICL--DCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~--~CGyvyd~~ 173 (235)
..|.|. .|++.|...
T Consensus 34 ~~~~C~~~~C~~~f~~~ 50 (89)
T 2wbs_A 34 KPYHCDWDGCGWKFARS 50 (89)
T ss_dssp CCEECCSTTTCCEESSH
T ss_pred CCcCCCCCCCCCccCCH
Confidence 357786 588777654
No 473
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.93 E-value=26 Score=31.80 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.5
Q ss_pred eEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
.-+|+.||-.|.++. ....||+|+.
T Consensus 278 ~v~Cp~cgA~y~~~~------kG~lC~vC~l 302 (320)
T 3mkr_B 278 VEKCPLSGACYSPEF------KGQICKVTTV 302 (320)
T ss_dssp CEECTTTCCEECGGG------TTSBCTTTSS
T ss_pred CccCCCCCCeechhh------CCCCCCCCcC
Confidence 569999999998841 2458999965
No 474
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.89 E-value=36 Score=29.41 Aligned_cols=16 Identities=31% Similarity=1.178 Sum_probs=11.8
Q ss_pred CCCCCCC--CCCCCCCCC
Q 038893 175 PFDELPD--TYVCPQCQA 190 (235)
Q Consensus 175 pfe~lpe--d~~CP~C~a 190 (235)
|..++|+ +|.||.|..
T Consensus 207 PL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 207 PLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CCCSCCSSSCCCCGGGC-
T ss_pred CcccCCCCCCCCCcCCcC
Confidence 5667777 499999964
No 475
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=26.87 E-value=18 Score=32.85 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=20.3
Q ss_pred cceEEcCCCceEEeCCCCCC----CCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFD----ELPDTYVCPQCQA 190 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe----~lped~~CP~C~a 190 (235)
....+|..|++.|+.+..++ ..+. .||.|+.
T Consensus 159 l~~~~C~~C~~~~~~~~~~~~~~~~~~P--~Cp~C~~ 193 (354)
T 2hjh_A 159 FATATCVTCHWNLPGERIFNKIRNLELP--LCPYCYK 193 (354)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCC--BCTTTHH
T ss_pred cCccccCCCCCcCCHHHHHHHhhccCCC--cCccccc
Confidence 45689999999997642111 1122 6999974
No 476
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=26.68 E-value=11 Score=33.50 Aligned_cols=28 Identities=32% Similarity=0.769 Sum_probs=16.9
Q ss_pred eE-EcCCCceEEeCCCCCCCCCC-CCCCCCCCCC
Q 038893 160 TH-ICLDCGYIYFLQKPFDELPD-TYVCPQCQAP 191 (235)
Q Consensus 160 ~y-~C~~CGyvyd~~tpfe~lpe-d~~CP~C~a~ 191 (235)
.| +|+.|+...... ++.+ .++||.|++.
T Consensus 23 l~~kc~~~~~~~~~~----~l~~~~~v~~~~~~~ 52 (304)
T 2f9y_B 23 VWTKCDSCGQVLYRA----ELERNLEVCPKCDHH 52 (304)
T ss_dssp CEECCTTTCCCEETT----HHHHTTTBCTTTCCB
T ss_pred HHHhhhhccchhhHH----HHHHHhCCCCCCCCC
Confidence 45 899998554442 2222 3689999553
No 477
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.59 E-value=27 Score=21.95 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=7.2
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
.+.|.+|...+..
T Consensus 15 ~~~C~IC~~~~~~ 27 (58)
T 2ecj_A 15 EASCSVCLEYLKE 27 (58)
T ss_dssp CCBCSSSCCBCSS
T ss_pred CCCCccCCcccCc
Confidence 4566666655543
No 478
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.58 E-value=17 Score=26.98 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=7.1
Q ss_pred CCCCCCCCc
Q 038893 184 VCPQCQAPK 192 (235)
Q Consensus 184 ~CP~C~a~k 192 (235)
.||+|+.+-
T Consensus 49 ~CPvCgs~l 57 (112)
T 1l8d_A 49 KCPVCGREL 57 (112)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCCcC
Confidence 799998753
No 479
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=26.46 E-value=30 Score=17.52 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.4
Q ss_pred eEEcC--CCceEEeC
Q 038893 160 THICL--DCGYIYFL 172 (235)
Q Consensus 160 ~y~C~--~CGyvyd~ 172 (235)
.|+|. .||..+..
T Consensus 2 ~~~C~~~~C~k~f~~ 16 (29)
T 2ab3_A 2 VYVCHFENCGRSFND 16 (29)
T ss_dssp CEEECSTTTCEEESS
T ss_pred CCCCcCCcCcCccCC
Confidence 48999 99988754
No 480
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=26.21 E-value=25 Score=26.61 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=10.9
Q ss_pred eEEcCCCceEEeC
Q 038893 160 THICLDCGYIYFL 172 (235)
Q Consensus 160 ~y~C~~CGyvyd~ 172 (235)
..+|+.||++|.-
T Consensus 79 ~~RC~eCG~~fkL 91 (98)
T 1v54_F 79 AQRCPSCGTHYKL 91 (98)
T ss_dssp CEECTTTCCEEEE
T ss_pred ceECCCCCeEEEE
Confidence 5899999988854
No 481
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.15 E-value=18 Score=21.20 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.3
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq3_A 11 KPYECNQCGKAFSVR 25 (46)
T ss_dssp CSSEETTTTEECSSH
T ss_pred CCeECCCCChhhCCH
Confidence 359999999988664
No 482
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.14 E-value=28 Score=24.07 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCC
Q 038893 177 DELPDTYVCPQCQA 190 (235)
Q Consensus 177 e~lped~~CP~C~a 190 (235)
+.+|+.|.||.|..
T Consensus 52 ~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 52 DALPSKFLCFRCIE 65 (72)
T ss_dssp SCCCSCCCCHHHHH
T ss_pred ccCCCcEECCCccC
Confidence 45788999999943
No 483
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.12 E-value=15 Score=21.04 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=11.7
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 359999999887653
No 484
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.05 E-value=29 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=21.1
Q ss_pred ceEEcCCCceEEeCC--------CCCC-CCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQ--------KPFD-ELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~--------tpfe-~lped~~CP~C~a 190 (235)
..|+|..||..|.-. +--. .....|.|+.|+.
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k 46 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGK 46 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCC
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCc
Confidence 469999999998664 0000 0123579999975
No 485
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=25.79 E-value=15 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEcCCCceEEeCC---CCCCCCCCCCCCCCCCC
Q 038893 161 HICLDCGYIYFLQ---KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 161 y~C~~CGyvyd~~---tpfe~lped~~CP~C~a 190 (235)
-+|..|..=|-.. ..-+++|+.|.||.|..
T Consensus 19 I~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 19 IECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp EECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 4788887444443 12235678999999853
No 486
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=25.75 E-value=21 Score=21.48 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=11.3
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||..|.-
T Consensus 7 kp~~C~~CgK~F~~ 20 (36)
T 1fv5_A 7 ARFMCLPCGIAFSS 20 (36)
T ss_dssp CCCEETTTTEECSC
T ss_pred cCeECCCCCCccCC
Confidence 46999999988754
No 487
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.72 E-value=22 Score=23.78 Aligned_cols=31 Identities=32% Similarity=1.005 Sum_probs=19.8
Q ss_pred eEEcCCCceEEeCC---CCCCCCC-CCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELP-DTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lp-ed~~CP~C~a 190 (235)
.-.|..|...|-.. -+...+| .+|.||.|..
T Consensus 17 ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 17 LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45788888776443 1234444 4899999943
No 488
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.46 E-value=33 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.451 Sum_probs=19.2
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQ 187 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~ 187 (235)
..|+|+ ||.+|-... -.|++..|+-
T Consensus 39 ~~f~Cr-Cg~~FC~~H---Ry~e~H~C~f 63 (85)
T 1wff_A 39 TSFECR-CGNNFCASH---RYAEAHGCNY 63 (85)
T ss_dssp SCEECT-TCCEECTTT---CSTGGGTCCS
T ss_pred CCeEcC-CCCEecccC---CCccCCCCcc
Confidence 379998 999999874 4566777863
No 489
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=25.35 E-value=28 Score=22.50 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=10.8
Q ss_pred ceEEcCCCceEEeC
Q 038893 159 ATHICLDCGYIYFL 172 (235)
Q Consensus 159 ~~y~C~~CGyvyd~ 172 (235)
..|+|..||+.|..
T Consensus 48 ~~~~C~~C~~~f~~ 61 (73)
T 1f2i_G 48 KPFQCRICMRNFSR 61 (73)
T ss_dssp CCEECTTTCCEESC
T ss_pred CCeECCCCCchhCC
Confidence 45999999988743
No 490
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.32 E-value=16 Score=20.90 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.4
Q ss_pred eEEcCCCceEEeCC
Q 038893 160 THICLDCGYIYFLQ 173 (235)
Q Consensus 160 ~y~C~~CGyvyd~~ 173 (235)
.|+|..||..|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 10 PYSCAECKETFSDN 23 (42)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeECCCCCCccCCH
Confidence 59999999887653
No 491
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.32 E-value=70 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.897 Sum_probs=18.6
Q ss_pred eEEcCCCceEEeCC---CCCCCCCCC--CCCCCCCC
Q 038893 160 THICLDCGYIYFLQ---KPFDELPDT--YVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~---tpfe~lped--~~CP~C~a 190 (235)
.-.|..|...|--. -|..++|+. |.||.|..
T Consensus 41 ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 41 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp EEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred eeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 34566665555443 245667763 99999964
No 492
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=25.19 E-value=16 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCccCee
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCPQCQAPKKRFA 196 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a~k~~F~ 196 (235)
.....|..||.+-+. ..|++|..++.+-.
T Consensus 66 ~~i~~C~~C~nlte~----------~~C~IC~d~~Rd~~ 94 (212)
T 3vdp_A 66 EKLRYCKICFNITDK----------EVCDICSDENRDHS 94 (212)
T ss_dssp HHCEECTTTCCEESS----------SSCHHHHCTTSEEE
T ss_pred HhCCcCCCCCCCCCC----------CcCCCCCCCCCCCC
Confidence 357899999998755 27999987666544
No 493
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.02 E-value=38 Score=30.83 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=20.0
Q ss_pred ceEEcCCCceEEeCCCCCCCCCCCCCCCCCCC
Q 038893 159 ATHICLDCGYIYFLQKPFDELPDTYVCPQCQA 190 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~tpfe~lped~~CP~C~a 190 (235)
..-+|+.||-.|.++- ....|++|+.
T Consensus 286 ~~v~Cp~cgA~y~~~~------kG~lC~vC~l 311 (325)
T 3mv2_A 286 PSVSDPLTGSKYVITE------KDKIDRIAMI 311 (325)
T ss_dssp CEEECTTTCCEEEGGG------TTSBCSSSSC
T ss_pred CCccCCCCCCeechhh------CCCCCCCCcC
Confidence 3579999999998841 2458999965
No 494
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.96 E-value=8.5 Score=30.85 Aligned_cols=13 Identities=69% Similarity=1.393 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 038893 179 LPDTYVCPQCQAP 191 (235)
Q Consensus 179 lped~~CP~C~a~ 191 (235)
.++.|.||.|...
T Consensus 47 ~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 47 LIDEYVCPQCQST 59 (174)
T ss_dssp TCSSCCCHHHHHH
T ss_pred CccCeecCCCcch
Confidence 4678999999553
No 495
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.94 E-value=16 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 11 NPFICSECGKVFTHK 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 359999999988664
No 496
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.86 E-value=57 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=18.8
Q ss_pred cceEEcCCCceEEeCCCCCCCCCCCCCCC
Q 038893 158 RATHICLDCGYIYFLQKPFDELPDTYVCP 186 (235)
Q Consensus 158 ~~~y~C~~CGyvyd~~tpfe~lped~~CP 186 (235)
...+.|+ ||.+|-... -+||+..|+
T Consensus 37 L~gf~Cr-Cg~~FCs~H---Ry~e~H~C~ 61 (74)
T 1wfl_A 37 LTGFDCR-CGNLFCGLH---RYSDKHNCP 61 (74)
T ss_dssp GGCEECT-TSCEECSSS---CSTTTTTCC
T ss_pred ccCeecC-CCCEechhc---CCCccCCCc
Confidence 3469999 999998874 456666774
No 497
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=24.58 E-value=6.2 Score=33.11 Aligned_cols=41 Identities=12% Similarity=0.358 Sum_probs=25.0
Q ss_pred ccchhhcccceEEcCCCceEEeCC-C--------------CCCCCCCCCCCCCCCC
Q 038893 150 KLTEAQKARATHICLDCGYIYFLQ-K--------------PFDELPDTYVCPQCQA 190 (235)
Q Consensus 150 k~~~~~~~~~~y~C~~CGyvyd~~-t--------------pfe~lped~~CP~C~a 190 (235)
++.+.+...-+|-|..|..+-.+. . .|-.-.+..+|+.||+
T Consensus 114 kR~~~~~D~~~wyc~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~e~rtc~~CG~ 169 (176)
T 1zvf_A 114 DRPGGENDKIRWYCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKT 169 (176)
T ss_dssp CCCSSSCCEEEEECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCC
T ss_pred cCCCCCccceEEEcCCCCCEEEEEEEEEechhHhHHHHHHHHhcChhhccCCCCCC
Confidence 344444445589999999665554 1 2333334458999986
No 498
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=24.54 E-value=18 Score=27.13 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=21.5
Q ss_pred eEEcCCCceEEeCC--------CCCCCCCCCCCCCCCCC
Q 038893 160 THICLDCGYIYFLQ--------KPFDELPDTYVCPQCQA 190 (235)
Q Consensus 160 ~y~C~~CGyvyd~~--------tpfe~lped~~CP~C~a 190 (235)
.-+|..|...|-.. ..-+++|+.|.||.|..
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 45799998776655 12246777899999954
No 499
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=24.48 E-value=30 Score=23.39 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCC
Q 038893 177 DELPDTYVCPQCQAP 191 (235)
Q Consensus 177 e~lped~~CP~C~a~ 191 (235)
+++|+++.||+|...
T Consensus 3 ~~~~~~~~C~IC~~~ 17 (78)
T 1t1h_A 3 PEFPEYFRCPISLEL 17 (78)
T ss_dssp CCCSSSSSCTTTSCC
T ss_pred cCCcccCCCCCcccc
Confidence 457788889988654
No 500
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.47 E-value=17 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=12.1
Q ss_pred ceEEcCCCceEEeCC
Q 038893 159 ATHICLDCGYIYFLQ 173 (235)
Q Consensus 159 ~~y~C~~CGyvyd~~ 173 (235)
..|+|..||..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 359999999888664
Done!