BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038895
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 8/166 (4%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT-----SGLSIPT 87
+ISGGH+NPAVT+ + I+I +FY AQCLG+I+ +L VT GL + T
Sbjct: 107 HISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT 166
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
V L A GL++E++ITF LV+T++A+ D + G++A +AIGF V L A
Sbjct: 167 --VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAIN 223
Query: 148 FSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF 193
++G SMNPARSFGPAV+ G++ WIYWVGP+IG LAG +Y +F
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 8/166 (4%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT-----SGLSIPT 87
+ISGGH+NPAVT+ + I+I +FY AQCLG+I+ +L VT GL + T
Sbjct: 68 HISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT 127
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
V L A GL++E++ITF LV+T++A+ D + G++A +AIGF V L A
Sbjct: 128 --VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAIN 184
Query: 148 FSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF 193
++G SMNPARSFGPAV+ G++ WIYWVGP+IG LAG +Y +F
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 111/186 (59%), Gaps = 14/186 (7%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG HLNPAVTLGL + I+I + Y IAQC+G+IVA +L +TS L S+ +
Sbjct: 69 HISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRND 128
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G+N+ +GL +EI+ T LV V AT D ++ LG AP+AIG V L A ++
Sbjct: 129 LADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYT 187
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF----------IGSYTP 199
G +NPARSFG AV++ +FS WI+WVGP IGG LA L+Y I + +T
Sbjct: 188 GCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKVWTS 247
Query: 200 ASTEDY 205
E+Y
Sbjct: 248 GQVEEY 253
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 106/166 (63%), Gaps = 8/166 (4%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT-----SGLSIPT 87
+ISGGH+NPAVT+ + I+I +FY AQCLG+I+ +L VT GL + T
Sbjct: 68 HISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT 127
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
V L A GL++E++ITF LV+T++A+ + G++A +AIGF V L A
Sbjct: 128 --VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAIN 184
Query: 148 FSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF 193
++G SMNPARSFGPAV+ G++ WIYWVGP+IG LAG +Y +F
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 14/186 (7%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG HLNPAVTLGL + I++L I Y IAQC+G+IVA +L +TS L S+ +A
Sbjct: 71 HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G+N+ +GL +EI+ T LV V AT D ++ LG P+AIGF V L A ++
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF----------IGSYTP 199
G +NPARSFG +V++ +F WI+WVGP IG LA L+Y I + +T
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTDRVKVWTS 249
Query: 200 ASTEDY 205
E+Y
Sbjct: 250 GQVEEY 255
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT-----SGLSIPT 87
+ISGGH+NPAVT+ + I+I +FY AQCLG+I+ +L VT GL +
Sbjct: 59 HISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTM 118
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
V L A GL++E++ITF LV+T++A+ + G+IA +AIGF V L A
Sbjct: 119 --VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAIN 175
Query: 148 FSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF 193
++G SMNPARSFGPAV+ G++ WIYWVGP+IG LAG +Y +F
Sbjct: 176 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG H+NPAVT VG +++L I Y +AQ LG++ +L VT ++ +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 120
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G++ + ++EI +T V ++AT + + G LG++A +A+GF + L ++
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVY 189
G MNPARSF PA+++ +F+ W+YWVGP+IG GL L+Y
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLY 219
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG H+NPAVT VG +++L I Y +AQ LG++ +L VT ++ +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 120
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G++ + ++EI +T V ++AT + + G LG++A +A+GF + L ++
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVY 189
G MNPARSF PA+++ +F+ W+YWVGP+IG GL L+Y
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLY 219
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG H+NPAVT VG +++L I Y +AQ LG++ +L VT ++ +
Sbjct: 57 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 116
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G++ + ++EI +T V ++AT + + G LG++A +A+GF + L ++
Sbjct: 117 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 175
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVY 189
G MNPARSF PA+++ +F+ W+YWVGP+IG GL L+Y
Sbjct: 176 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLY 215
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---SIPTHA 89
+ISG H+NPAVT VG +++L I Y +AQ LG++ +L VT ++ +
Sbjct: 55 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 114
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+ G++ + ++EI +T V ++AT + + G LG++A +A+GF + L ++
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 173
Query: 150 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVY 189
G MNPARSF PA+++ +F+ W+YWVGP+IG GL L+Y
Sbjct: 174 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLY 213
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 32 ANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIP----T 87
A ISGGH+NPAVT GL + +++L + Y IAQCLG+I L++ G
Sbjct: 93 AGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA 152
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT----IAPIAIGFIVGANIL 143
++V G N L EI+ TF LVYTV+ +A DPK+ + +AP+ IGF V L
Sbjct: 153 NSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHL 211
Query: 144 AAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLIGGGLA 185
A P +G +NPARSFG AV+ + WI+WVGP IG +A
Sbjct: 212 ATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVA 256
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 32 ANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSG----LSIPT 87
A ISGGH+NPAVT GL + +++L + Y IAQCLG+I L++ G
Sbjct: 116 AGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA 175
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT----IAPIAIGFIVGANIL 143
++V G N L EI+ TF LVYTV+ +A DPK+ + +AP+ IGF V L
Sbjct: 176 NSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHL 234
Query: 144 AAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLIGGGLA 185
A P +G +NPARSFG AV+ + WI+WVGP IG +A
Sbjct: 235 ATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVA 279
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 32 ANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSG----LSIPT 87
A ISGGH+NPAVT GL + +++L + Y IAQCLG+I L++ G
Sbjct: 93 AGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA 152
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT----IAPIAIGFIVGANIL 143
++V G N L EI+ TF LVYTV+ +A DPK+ + +AP+ IGF V L
Sbjct: 153 NSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHL 211
Query: 144 AAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLIGGGLA 185
A P +G +NPARSFG AV+ + WI+WVGP IG +A
Sbjct: 212 ATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVA 256
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 92/165 (55%), Gaps = 12/165 (7%)
Query: 32 ANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSG----LSIPT 87
A ISGGH+NPAVT GL + + +L + Y IAQCLG+I L++ G
Sbjct: 116 AGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA 175
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT----IAPIAIGFIVGANIL 143
++V G N L EI+ TF LVYTV+ +A DPK+ + +AP+ IGF V L
Sbjct: 176 NSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHL 234
Query: 144 AAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLIGGGLA 185
A P +G +NPARSFG AV+ + WI+WVGP IG +A
Sbjct: 235 ATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVA 279
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 92/165 (55%), Gaps = 12/165 (7%)
Query: 32 ANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSG----LSIPT 87
A ISGGH+NPAVT GL + + +L + Y IAQCLG+I L++ G
Sbjct: 112 AGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA 171
Query: 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT----IAPIAIGFIVGANIL 143
++V G N L EI+ TF LVYTV+ +A DPK+ + +AP+ IGF V L
Sbjct: 172 NSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHL 230
Query: 144 AAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLIGGGLA 185
A P +G +NPARSFG AV+ + WI+WVGP IG +A
Sbjct: 231 ATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVA 275
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 15/165 (9%)
Query: 34 ISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAG 93
+SGGH+NPA+TL L VG I++L FY AQ +G+I +L V P +A G
Sbjct: 64 VSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVA-----PLNARGNL 118
Query: 94 L--------NAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAA 145
+ +V+E+++TF L ++A+ + P+G+ A ++IG V L
Sbjct: 119 AVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVG 177
Query: 146 GPFSGGSMNPARSFGPAVVSGDFSQI-WIYWVGPLIGGGLAGLVY 189
F+G SMNPARSFGPAVV FS W++WVGP++G LA ++Y
Sbjct: 178 IYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILY 222
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 30 IAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHA 89
I +SGG+LNPAVTL L + I GI Q + + A +T G +A
Sbjct: 102 ITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANA 161
Query: 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149
+G G + GL +E T L TV A + + AP IG + L ++
Sbjct: 162 LGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYT 219
Query: 150 GGSMNPARSFGPAVVSGDFSQI-WIYWVGPLIGGGLA 185
G +NPARSFGPAV + F WIYW+GP++G LA
Sbjct: 220 GAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLA 256
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 56 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 115
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 116 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 171
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 172 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLACT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS-------- 84
+ISGGH NPAVT+GL GG + Y IAQ +G IVA LL + SG +
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 85 -----IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVG 139
H+ G G + LV+E+V++ + ++ A K P G APIAIG +
Sbjct: 119 FASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIH--GATDKFAPAG-FAPIAIGLALT 174
Query: 140 ANILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYW 175
L + P + S+NPARS A+ G ++ Q+W +W
Sbjct: 175 LIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGA 92
NISG H+NPAVT+GL + Y IAQ LG+ + + +GA
Sbjct: 75 NISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGA 134
Query: 93 -----GLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
G++ + ++ E+V TF L+ T+ A D ++ P G A I IG V I G
Sbjct: 135 TAPFPGISYWQAMLAEVVGTFLLMITIMGIAVD-ERAPKG-FAGIIIGLTVAGIITTLGN 192
Query: 148 FSGGSMNPARSFGPAVVSGDF--SQIW----IYWVGPLIGGGLAGLVY 189
SG S+NPAR+FGP + F + +W IY +GP++G LA L Y
Sbjct: 193 ISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTY 240
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 35/206 (16%)
Query: 30 IAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSI---P 86
+ A +SG HLNPAVT+ L + I + ++Q G+ A L+ + L
Sbjct: 58 LTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 117
Query: 87 THAVGAG------------------LNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT 128
TH + G +N + +E+VIT L+ + A D P G
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP 177
Query: 129 IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVS-------------GDFSQIWIYW 175
+AP+ IG ++ + GP +G +MNPAR FGP V + D +
Sbjct: 178 LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPL 237
Query: 176 VGPLIGGGLAGLVYGDIFIGSYTPAS 201
GP++G + Y + IG + P
Sbjct: 238 FGPIVGAIVGAFAYRKL-IGRHLPCD 262
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 33 NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGA 92
ISG H+NPAVT+ L G + Y +AQ +G+ + LL + +GA
Sbjct: 76 RISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGA 135
Query: 93 -----GLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
G+ + ++ E + TF L+ + A D + P A + IG VG I G
Sbjct: 136 TAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPP--GFAGLVIGLTVGGIITTIGN 193
Query: 148 FSGGSMNPARSFGPAVVSGDFS---QIW----IYWVGPLIGGGLAGLVY 189
+G S+NPAR+FGP + GD +W IY +GP++G A +Y
Sbjct: 194 ITGSSLNPARTFGPYL--GDSLMGINLWQYFPIYVIGPIVGAVAAAWLY 240
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 35/206 (16%)
Query: 30 IAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSI---P 86
+ A +SG HLNPAVT+ L + I + ++Q G+ A L+ + L
Sbjct: 58 LTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 117
Query: 87 THAVGAG------------------LNAAEGLVMEIVITFALVYTVYATAADPKKGPLGT 128
TH + G +N + +E+VIT L+ + A D P G
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP 177
Query: 129 IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVS-------------GDFSQIWIYW 175
+AP+ IG ++ + GP +G +MNPAR FGP V + D +
Sbjct: 178 LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPL 237
Query: 176 VGPLIGGGLAGLVYGDIFIGSYTPAS 201
GP++G + Y + IG + P
Sbjct: 238 FGPIVGAIVGAFAYRKL-IGRHLPCD 262
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 20/174 (11%)
Query: 34 ISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS--------- 84
ISGGH NPAV++GL V G + + Y IAQ G+IVA L + +G +
Sbjct: 85 ISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFAS 144
Query: 85 --IPTHAVGAGLNAAEGLVMEIVIT-FALVYTVYATAADPKKGPLGTIAPIAIGFIVGAN 141
H+ G G + L++EI++T F L+ + +T G APIAIG +
Sbjct: 145 NGYGEHSPG-GYSLVSALLIEIILTAFFLIVILGSTHGRVPAG----FAPIAIGLALTLI 199
Query: 142 ILAAGPFSGGSMNPARSFGPAVVSGDFS--QIWIYWVGPLIGGGLAGLVYGDIF 193
L + P + S+NPARS G A+ G ++ Q+W++W+ P++GG AG V +F
Sbjct: 200 HLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGA-AGAVIWKLF 252
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 25/174 (14%)
Query: 30 IAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACL----LLQFVTSGLSI 85
++A +SG HLN AV++GL+ + Y+ AQ LG+ V L S I
Sbjct: 60 VSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKI 119
Query: 86 PTHAVGAGLNAAEGLV----MEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGAN 141
P A N + L E+++T ++ V D + G + + +VG
Sbjct: 120 PQFAWETSRNPSISLTGAFFNELILT-GILLLVILVVVD--ENICGKFHILKLSSVVGLI 176
Query: 142 ILAAGPFSGGS----MNPARSFGPAVVS----------GDFSQIWIYWVGPLIG 181
IL G GG+ +NP+R G +S D W+ V P +G
Sbjct: 177 ILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVG 230
>pdb|3TDS|E Chain E, Crystal Structure Of Hsc F194i
pdb|3TDS|A Chain A, Crystal Structure Of Hsc F194i
pdb|3TDS|B Chain B, Crystal Structure Of Hsc F194i
pdb|3TDS|C Chain C, Crystal Structure Of Hsc F194i
pdb|3TDS|D Chain D, Crystal Structure Of Hsc F194i
Length = 268
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|3TE0|A Chain A, Crystal Structure Of Hsc K148e
pdb|3TE0|B Chain B, Crystal Structure Of Hsc K148e
pdb|3TE0|C Chain C, Crystal Structure Of Hsc K148e
pdb|3TE0|D Chain D, Crystal Structure Of Hsc K148e
pdb|3TE0|E Chain E, Crystal Structure Of Hsc K148e
Length = 268
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|3TDX|A Chain A, Crystal Structure Of Hsc L82v
pdb|3TDX|B Chain B, Crystal Structure Of Hsc L82v
pdb|3TDX|C Chain C, Crystal Structure Of Hsc L82v
pdb|3TDX|D Chain D, Crystal Structure Of Hsc L82v
pdb|3TDX|E Chain E, Crystal Structure Of Hsc L82v
Length = 268
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|3TDO|A Chain A, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|B Chain B, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|C Chain C, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|D Chain D, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|E Chain E, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDR|A Chain A, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|B Chain B, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|C Chain C, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|D Chain D, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|E Chain E, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|F Chain F, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|G Chain G, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|H Chain H, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|I Chain I, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|J Chain J, Crystal Structure Of Hsc At Ph 7.5
Length = 268
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
Length = 268
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|3TDP|A Chain A, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|B Chain B, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|C Chain C, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|D Chain D, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|E Chain E, Crystal Structure Of Hsc At Ph 4.5
Length = 257
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 84 FTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 130
>pdb|3TE1|A Chain A, Crystal Structure Of Hsc T84a
pdb|3TE1|B Chain B, Crystal Structure Of Hsc T84a
pdb|3TE1|C Chain C, Crystal Structure Of Hsc T84a
pdb|3TE1|D Chain D, Crystal Structure Of Hsc T84a
pdb|3TE1|E Chain E, Crystal Structure Of Hsc T84a
Length = 268
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 148 FSGGSM-NPARSFGPAVVSGDFSQIWIY-WVGPLIGGGLAGLVYGDIFIGS 196
F+G +M A V D S+IW Y WVG LIG LV G IF+G+
Sbjct: 86 FAGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIG----ALVLGIIFVGT 132
>pdb|2FBJ|H Chain H, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 220
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 167 DFSQIWIYWVGPLIGGGLA--GLVYGDIFIGSYTPASTEDY 205
DFS+ W+ WV G GL G ++ D +YTP+ + +
Sbjct: 28 DFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKF 68
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 68 GSIVACLLLQFVTSGLSIPTHAVGAGL----NAAEGLVMEIVITFALVYTVYATAADP 121
G LL F S+P V AGL +AAE VME+ + LV T A A DP
Sbjct: 161 GVRTRALLELFAREKASLPPVVVDAGLGLPSHAAE--VMELGLDAVLVNTAIAEAQDP 216
>pdb|3U0W|H Chain H, Ad Related Murine Antibody Fragment
Length = 216
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 167 DFSQIWIYWVGPLIGGGLA--GLVYGDIFIGSYTPASTEDY 205
DFS+ W+ WV G GL G + D +YTP+ + +
Sbjct: 28 DFSRYWMNWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKF 68
>pdb|4HPO|H Chain H, Crystal Structure Of Rv144-elicited Antibody Ch58 In
Complex With V2 Peptide
pdb|4HQQ|H Chain H, Crystal Structure Of Rv144-elicited Antibody Ch58
Length = 231
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 168 FSQIWIYWVGPLIGGGLA--GLVYGDIFIGSYTPA 200
F+ WI WV + G GL G++Y F Y+P+
Sbjct: 29 FTSYWIVWVRQMPGKGLEWMGIIYPGDFDTKYSPS 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,064
Number of Sequences: 62578
Number of extensions: 229258
Number of successful extensions: 701
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 72
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)