Query 038895
Match_columns 206
No_of_seqs 159 out of 1541
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 9.9E-49 2.1E-53 319.0 18.0 194 7-203 38-236 (238)
2 PLN00166 aquaporin TIP2; Provi 100.0 1.5E-45 3.2E-50 304.5 23.2 197 10-206 53-250 (250)
3 PLN00027 aquaporin TIP; Provis 100.0 4.4E-45 9.5E-50 302.5 22.5 196 10-205 55-252 (252)
4 PLN00184 aquaporin NIP1; Provi 100.0 2.8E-44 6.1E-49 302.5 21.7 183 10-194 84-273 (296)
5 COG0580 GlpF Glycerol uptake f 100.0 4.7E-44 1E-48 290.9 19.4 188 5-194 33-240 (241)
6 PRK05420 aquaporin Z; Provisio 100.0 4.6E-43 1E-47 287.1 23.0 184 9-195 32-229 (231)
7 PLN00167 aquaporin TIP5; Provi 100.0 4.5E-43 9.7E-48 290.6 22.8 186 8-194 55-240 (256)
8 PLN00026 aquaporin NIP; Provi 100.0 1.7E-43 3.6E-48 297.4 19.5 188 11-201 102-289 (298)
9 PLN00182 putative aquaporin NI 100.0 6.1E-43 1.3E-47 292.8 22.2 182 11-194 73-254 (283)
10 PF00230 MIP: Major intrinsic 100.0 3.9E-43 8.5E-48 287.3 17.8 179 10-189 44-227 (227)
11 PTZ00016 aquaglyceroporin; Pro 100.0 2.2E-42 4.7E-47 291.6 21.9 185 10-195 80-291 (294)
12 KOG0224 Aquaporin (major intri 100.0 1.2E-43 2.6E-48 291.8 11.9 190 8-198 61-279 (316)
13 PLN00183 putative aquaporin NI 100.0 1.1E-39 2.3E-44 272.2 20.9 183 11-196 76-258 (274)
14 cd00333 MIP Major intrinsic pr 100.0 2E-39 4.4E-44 265.7 19.8 182 10-192 31-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 9.2E-39 2E-43 259.8 20.0 177 12-189 33-216 (216)
16 PLN00184 aquaporin NIP1; Provi 99.7 2.3E-16 4.9E-21 133.4 9.8 103 93-195 50-156 (296)
17 PLN00026 aquaporin NIP; Provi 99.7 1.6E-16 3.5E-21 134.1 8.8 105 91-195 65-173 (298)
18 PLN00167 aquaporin TIP5; Provi 99.6 4.3E-15 9.4E-20 123.4 10.8 106 93-198 18-132 (256)
19 PLN00183 putative aquaporin NI 99.6 4.2E-15 9.2E-20 124.4 8.4 102 93-194 41-146 (274)
20 PLN00166 aquaporin TIP2; Provi 99.6 8.2E-15 1.8E-19 121.4 9.1 103 93-195 14-125 (250)
21 PLN00182 putative aquaporin NI 99.6 1.2E-14 2.6E-19 122.1 8.8 102 93-194 38-143 (283)
22 PTZ00016 aquaglyceroporin; Pro 99.5 1.8E-14 3.8E-19 122.0 8.4 102 94-195 47-152 (294)
23 cd00333 MIP Major intrinsic pr 99.5 1.3E-14 2.8E-19 118.9 6.7 99 98-196 1-104 (228)
24 PRK05420 aquaporin Z; Provisio 99.5 3.2E-14 6.9E-19 116.8 9.0 98 97-194 2-104 (231)
25 PLN00027 aquaporin TIP; Provis 99.5 4.5E-14 9.7E-19 117.3 9.9 101 94-194 17-126 (252)
26 TIGR00861 MIP MIP family chann 99.5 1.4E-13 3E-18 112.0 6.9 96 102-197 1-105 (216)
27 COG0580 GlpF Glycerol uptake f 99.4 9.3E-13 2E-17 107.7 7.4 107 95-201 3-116 (241)
28 KOG0224 Aquaporin (major intri 99.4 6.3E-13 1.4E-17 110.4 6.2 104 95-198 30-138 (316)
29 KOG0223 Aquaporin (major intri 99.3 5E-12 1.1E-16 103.6 8.3 104 93-196 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.3 3.1E-12 6.8E-17 104.6 4.7 103 93-195 4-116 (227)
31 PRK11562 nitrite transporter N 87.3 13 0.00029 31.2 11.2 174 16-200 61-256 (268)
32 COG2116 FocA Formate/nitrite f 83.1 27 0.00058 29.4 12.5 175 12-195 63-259 (265)
33 PRK10805 formate transporter; 79.1 39 0.00084 28.7 12.7 99 14-116 69-181 (285)
34 PRK09713 focB putative formate 62.3 97 0.0021 26.3 11.3 101 13-116 67-180 (282)
35 PF03033 Glyco_transf_28: Glyc 61.3 3.4 7.3E-05 30.2 0.5 18 35-52 8-25 (139)
36 TIGR00790 fnt formate/nitrite 48.8 1.5E+02 0.0033 24.3 9.3 77 40-116 68-157 (239)
37 PF01226 Form_Nir_trans: Forma 46.0 1.7E+02 0.0037 24.2 9.8 104 12-117 56-171 (250)
38 TIGR00851 mtlA PTS system, man 44.1 1.8E+02 0.0038 25.3 8.5 39 34-73 183-224 (338)
39 PRK12446 undecaprenyldiphospho 43.3 12 0.00025 32.6 1.0 20 32-51 8-27 (352)
40 PF15088 NADH_dh_m_C1: NADH de 32.9 32 0.0007 20.8 1.5 31 4-34 5-35 (49)
41 PRK14213 camphor resistance pr 27.6 1.3E+02 0.0028 21.9 4.3 28 52-79 89-116 (118)
42 PF14034 Spore_YtrH: Sporulati 27.1 54 0.0012 23.4 2.1 45 150-194 53-100 (102)
43 PF14034 Spore_YtrH: Sporulati 24.1 2.5E+02 0.0055 20.0 5.0 46 36-81 53-100 (102)
44 PRK14220 camphor resistance pr 22.3 1.8E+02 0.004 21.2 4.3 28 52-79 89-116 (120)
45 TIGR02587 putative integral me 22.1 4.5E+02 0.0097 22.2 6.9 63 47-109 87-153 (271)
46 PF08370 PDR_assoc: Plant PDR 21.9 2.2E+02 0.0048 18.5 4.1 30 156-187 9-40 (65)
47 PRK14200 camphor resistance pr 21.1 2.3E+02 0.0049 20.9 4.6 28 52-79 96-123 (127)
48 PRK14205 camphor resistance pr 20.9 2.1E+02 0.0045 20.8 4.3 27 52-78 88-114 (118)
49 PF15176 LRR19-TM: Leucine-ric 20.9 1.3E+02 0.0029 21.4 3.1 35 169-203 14-58 (102)
50 PF09163 Form-deh_trans: Forma 20.6 1.6E+02 0.0034 17.7 2.9 24 180-203 20-43 (44)
51 PRK14207 camphor resistance pr 20.5 2.6E+02 0.0056 20.4 4.8 28 52-79 93-120 (123)
52 PF04632 FUSC: Fusaric acid re 20.3 7E+02 0.015 23.2 17.5 135 26-194 354-491 (650)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-49 Score=318.97 Aligned_cols=194 Identities=52% Similarity=0.915 Sum_probs=177.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 038895 7 ALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL--- 83 (206)
Q Consensus 7 ~~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~--- 83 (206)
..++.+++.+++++|+++++.+++++++||||+|||||+++++.||+++.+++.|+.+|++|+++|+.+++.+.+.+
T Consensus 38 ~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~ 117 (238)
T KOG0223|consen 38 YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNR 117 (238)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCccccc
Confidence 46777899999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 038895 84 -SIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPA 162 (206)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~ 162 (206)
......+.++.+..|+++.|++.||.|+++++.+.+|+|+. .+.|+.+|+.+...+++.+++||++|||||+|+|+
T Consensus 118 ~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpA 194 (238)
T KOG0223|consen 118 KGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPA 194 (238)
T ss_pred CCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHH
Confidence 34455677889999999999999999999999877888764 78999999999999999999999999999999999
Q ss_pred HhhcCCCceeecchhhhHHHHHHHHHHHHHhcCC-CCCCCCC
Q 038895 163 VVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGS-YTPASTE 203 (206)
Q Consensus 163 ~~~~~~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~-~~~~~~~ 203 (206)
+..++|+++|+||++|++|+++++++||.++.+. ++++++.
T Consensus 195 vv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~~~~ 236 (238)
T KOG0223|consen 195 VVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPTKSA 236 (238)
T ss_pred HHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCccccccCcc
Confidence 9999999999999999999999999999999855 4444433
No 2
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1.5e-45 Score=304.55 Aligned_cols=197 Identities=88% Similarity=1.421 Sum_probs=172.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHA 89 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~ 89 (206)
..+++.++++||+++++.+++++++||+|+|||+|++.++.|+++|.+...|+++|++|+++|+.+.+.+.+++......
T Consensus 53 ~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~ 132 (250)
T PLN00166 53 PAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG 132 (250)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 45688899999999999999999999999999999999999999999999999999999999999998887654322223
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCC
Q 038895 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFS 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~ 169 (206)
..++.+..++++.|+++|++|+++++....|+|+...+...|+.+|+.+...++..+++||++|||||||+|+++.++|+
T Consensus 133 ~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~ 212 (250)
T PLN00166 133 VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFS 212 (250)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCc
Confidence 34567889999999999999999999854554433334578999999999999999999999999999999999999999
Q ss_pred ceeecchhhhHHHHHHHHHHHHHhcCCCCCCC-CCCCC
Q 038895 170 QIWIYWVGPLIGGGLAGLVYGDIFIGSYTPAS-TEDYA 206 (206)
Q Consensus 170 ~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~~~~-~~~~~ 206 (206)
++|+||++|++|+++++++|+.++.+.+++.| .|||+
T Consensus 213 ~~wvywvgPi~Ga~~aa~~y~~l~~~~~~~~~~~~~~~ 250 (250)
T PLN00166 213 QIWIYWVGPLVGGALAGLIYGDVFIGSYAAAPTSEDYA 250 (250)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhcccCCCCCCCcccC
Confidence 99999999999999999999999876666554 67774
No 3
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=4.4e-45 Score=302.55 Aligned_cols=196 Identities=67% Similarity=1.127 Sum_probs=174.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHA 89 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~ 89 (206)
..+++.++++||+++++.+++++++||+|+|||+|++.++.|+++|.+...|+++|++|+++|+.+.+...++.....+.
T Consensus 55 ~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~ 134 (252)
T PLN00027 55 PAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFS 134 (252)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 45688899999999999999999999999999999999999999999999999999999999999998887665445566
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCC
Q 038895 90 VGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFS 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~ 169 (206)
+.++.+..++++.|+++|++|+++++....|+|+...+.+.|+.+|+.+...+++.+++||++|||||||+|+++.++|+
T Consensus 135 ~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~ 214 (252)
T PLN00027 135 LSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT 214 (252)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcch
Confidence 66788899999999999999999999765676654334578999999999999999999999999999999999999999
Q ss_pred ceeecchhhhHHHHHHHHHHHHHhcC--CCCCCCCCCC
Q 038895 170 QIWIYWVGPLIGGGLAGLVYGDIFIG--SYTPASTEDY 205 (206)
Q Consensus 170 ~~~vy~i~p~~Ga~~a~~l~~~l~~~--~~~~~~~~~~ 205 (206)
++|+||++|++|+++++++|++++.+ .+++.++.||
T Consensus 215 ~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~~~~~~~~~ 252 (252)
T PLN00027 215 NHWVYWAGPLIGGGIAGLVYELIFIGSTTHEQLPTTDY 252 (252)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCC
Confidence 99999999999999999999999874 4445455554
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=2.8e-44 Score=302.50 Aligned_cols=183 Identities=33% Similarity=0.506 Sum_probs=161.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS----- 84 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~----- 84 (206)
..+++.++++||+++++.+++++++||||+|||||+++++.|+++|++.+.|+++|++|+++|+++++.+++...
T Consensus 84 ~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~ 163 (296)
T PLN00184 84 VVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSG 163 (296)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccc
Confidence 347888999999999999999999999999999999999999999999999999999999999999988874321
Q ss_pred -C-cccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 038895 85 -I-PTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPA 162 (206)
Q Consensus 85 -~-~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~ 162 (206)
. ..+++.++.+..++++.|+++|++|+++++....|++. .+...++.+|+.+.+.+++.+++||++|||||||+|+
T Consensus 164 ~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~--~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPa 241 (296)
T PLN00184 164 KHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRA--IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPA 241 (296)
T ss_pred ccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcC--CCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHH
Confidence 1 11223344588899999999999999999975444332 2457899999999999999999999999999999999
Q ss_pred HhhcCCCceeecchhhhHHHHHHHHHHHHHhc
Q 038895 163 VVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 163 ~~~~~~~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
++.+.|+++|+||++|++|+++++++|++++.
T Consensus 242 l~~~~~~~~WVy~vgPilGa~laal~y~~l~~ 273 (296)
T PLN00184 242 MVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRY 273 (296)
T ss_pred HHhhcccccchHHhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999976
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-44 Score=290.86 Aligned_cols=188 Identities=34% Similarity=0.531 Sum_probs=165.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 038895 5 DAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL- 83 (206)
Q Consensus 5 ~~~~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~- 83 (206)
+++....+++.++++||+++.+.+|+++++||||+|||||+++++.||++|+|++.|+++|++||++|+.+++.++.+.
T Consensus 33 ~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~ 112 (241)
T COG0580 33 GSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKI 112 (241)
T ss_pred cccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred ---------CCcccccCCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCcc
Q 038895 84 ---------SIPTHAVGAG-LNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSM 153 (206)
Q Consensus 84 ---------~~~~~~~~~~-~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~l 153 (206)
....+++.|+ .+..++++.|+++|++|++.+++..+|++. ++.+.|+.+|+.+..+.++.++.||.++
T Consensus 113 ~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~--~~~~apl~iGllv~~i~~s~g~~TG~ai 190 (241)
T COG0580 113 LETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA--NAGFAPLAIGLLVTAIGLSLGPTTGTAI 190 (241)
T ss_pred HhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc--cccchHHHHHHHHHHHHHHhcCCCCCcc
Confidence 1345556664 478899999999999999999985444433 3458999999999999999999999999
Q ss_pred ChhhhHHHHHhhcC---------CCceeecchhhhHHHHHHHHHHHHHhc
Q 038895 154 NPARSFGPAVVSGD---------FSQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 154 NPAr~l~~~~~~~~---------~~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
|||||+|||+...- +.|.|+||++|++|+++++++|+.++.
T Consensus 191 NPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 191 NPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred ChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 99999999996632 248999999999999999999998764
No 6
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=4.6e-43 Score=287.06 Aligned_cols=184 Identities=33% Similarity=0.566 Sum_probs=160.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---
Q 038895 9 DPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSI--- 85 (206)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~--- 85 (206)
++.+++.++++||+++++.+++++++||+|+|||||++.++.||++|++.+.|+++|++|+++|+.+++.+++++..
T Consensus 32 ~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~ 111 (231)
T PRK05420 32 LGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDL 111 (231)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999987754210
Q ss_pred c--cc------ccC-CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChh
Q 038895 86 P--TH------AVG-AGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPA 156 (206)
Q Consensus 86 ~--~~------~~~-~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPA 156 (206)
. .+ ... ...+..++++.|+++|++|+++++.. .|+|+. +...|+.+|+.+....++.+++||++||||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~~--~~~~p~~iGl~v~~~~~~~~~~TG~s~NPA 188 (231)
T PRK05420 112 AGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGA-TDKRAP--AGFAPIAIGLALTLIHLISIPVTNTSVNPA 188 (231)
T ss_pred ccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hCCCCC--CcchHHHHHHHHHHHHHHhhccCCCccCcH
Confidence 0 01 111 23477899999999999999999974 665542 457899999999999999999999999999
Q ss_pred hhHHHHHhhcCC--CceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 157 RSFGPAVVSGDF--SQIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 157 r~l~~~~~~~~~--~~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
|||+|+++.++| +++|+||++|++|+++++++|++++++
T Consensus 189 R~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 189 RSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred HHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 999999998766 589999999999999999999999764
No 7
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=4.5e-43 Score=290.55 Aligned_cols=186 Identities=56% Similarity=1.007 Sum_probs=164.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 038895 8 LDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPT 87 (206)
Q Consensus 8 ~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~ 87 (206)
..+.+++.++++||+++++.+++++++||+|+|||+|++.++.|+++|++.+.|+++|++|+++|+.+.+.++++...+.
T Consensus 55 ~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~ 134 (256)
T PLN00167 55 SDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPT 134 (256)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33567999999999999999999999999999999999999999999999999999999999999999988765532222
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcC
Q 038895 88 HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD 167 (206)
Q Consensus 88 ~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~ 167 (206)
....++.+..++++.|+++|++|+++++. ..|+|++..+...|+.+|+.+....+..+++||+++||||||+|+++.+.
T Consensus 135 ~~~~~~~s~~~~~~~E~i~T~~L~~~i~~-~~~~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~ 213 (256)
T PLN00167 135 YKIAEEMTGFGASVLEGVLTFGLVYTVYA-AGDPRRGLLGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGS 213 (256)
T ss_pred cccCcccchHHHHHHHHHHHHHHHHHHHH-hccccccCCCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccC
Confidence 22334557788999999999999999997 46665543345789999999999999999999999999999999999988
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHhc
Q 038895 168 FSQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 168 ~~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
|+++|+||++|++|+++++++|++++.
T Consensus 214 ~~~~wvywvgP~~Ga~l~a~~y~~l~~ 240 (256)
T PLN00167 214 FKNQAVYWVGPLLGGAVAGLLYDNVVF 240 (256)
T ss_pred ccCcEEEeHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 8
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=1.7e-43 Score=297.36 Aligned_cols=188 Identities=33% Similarity=0.513 Sum_probs=164.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 038895 11 AGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAV 90 (206)
Q Consensus 11 ~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~ 90 (206)
.+++.++++||+++++.+++++++||||+|||||++.++.|+++|++.+.|+++|++|+++|+.+++.++++..... .+
T Consensus 102 ~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g-~t 180 (298)
T PLN00026 102 ETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGG-VT 180 (298)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-ee
Confidence 46888899999999999999999999999999999999999999999999999999999999999998876532221 12
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCCc
Q 038895 91 GAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQ 170 (206)
Q Consensus 91 ~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~~ 170 (206)
.++.+..++++.|+++|++|+++++....|+++ .+...++.+|+.+...+++.+++||++|||||||+|+++.++|++
T Consensus 181 ~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~--~~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~ 258 (298)
T PLN00026 181 VPSVSTGQAFALEFIITFNLLFVVTAVATDTRA--VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRA 258 (298)
T ss_pred eecccHHHHHHHHHHHHHHHHHhheeeecCCCC--cCCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcCCchh
Confidence 346788999999999999999999875445432 234678999999999999999999999999999999999999999
Q ss_pred eeecchhhhHHHHHHHHHHHHHhcCCCCCCC
Q 038895 171 IWIYWVGPLIGGGLAGLVYGDIFIGSYTPAS 201 (206)
Q Consensus 171 ~~vy~i~p~~Ga~~a~~l~~~l~~~~~~~~~ 201 (206)
+|+||++|++|+++++++|+.+..+.+++++
T Consensus 259 ~wVy~vaPilGAilga~ly~~~~~~~~~~~~ 289 (298)
T PLN00026 259 IWIYLVAPTLGALAGAGTYTAVKLREEDGDP 289 (298)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCccccccC
Confidence 9999999999999999999998765555554
No 9
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=6.1e-43 Score=292.76 Aligned_cols=182 Identities=35% Similarity=0.575 Sum_probs=162.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 038895 11 AGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAV 90 (206)
Q Consensus 11 ~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~ 90 (206)
.+.+.++++||+++++.+++++++||||+|||||+++++.|+++|++.+.|+++|++|+++|+.+++.+++......+.+
T Consensus 73 ~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~ 152 (283)
T PLN00182 73 ITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGT 152 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeC
Confidence 46788899999999999999999999999999999999999999999999999999999999999998875433334445
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCCc
Q 038895 91 GAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQ 170 (206)
Q Consensus 91 ~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~~ 170 (206)
.++.+..++++.|+++|++|+++++....+++. .+...++.+|+.+.+..++.+++||+++||||+|+|+++.+.|.+
T Consensus 153 ~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~--~~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~ 230 (283)
T PLN00182 153 TPTDSSGQALVAEIIISFLLMFVISGVATDSRA--VGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKG 230 (283)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhheecccc--CCcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhccccc
Confidence 566788999999999999999999875444332 234679999999999999999999999999999999999889999
Q ss_pred eeecchhhhHHHHHHHHHHHHHhc
Q 038895 171 IWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 171 ~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
+|+||++|++|+++++++|+++..
T Consensus 231 ~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 231 IWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999974
No 10
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=3.9e-43 Score=287.30 Aligned_cols=179 Identities=42% Similarity=0.723 Sum_probs=159.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--C--C
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL--S--I 85 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~--~--~ 85 (206)
..+++.+++++|+++++.+++++++||||+|||||+++++.||+++++++.|+++|++|+++|+.+++.++++. . .
T Consensus 44 ~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~ 123 (227)
T PF00230_consen 44 SGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGI 123 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTT
T ss_pred cccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeeeeeecccceeeEEeeccccccccccchhhcccCccccccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999988762 2 2
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHh
Q 038895 86 PTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGP-LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 164 (206)
Q Consensus 86 ~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~-~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~ 164 (206)
....+.++.+..++++.|+++|++|+++++.. .|+++.. .+.+.|+.+|+.+....+..++.||+++||||+|+|+++
T Consensus 124 ~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~-~~~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~ 202 (227)
T PF00230_consen 124 FATTPPPGISLGQAFFSEFIGTFILVLVILAV-ADDKRKFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALF 202 (227)
T ss_dssp TSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHH-TSTTSSSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhhhHHHhhhhhh-cccccccccccccceeEEEEEeecccccccccccccCchhhcCceee
Confidence 23345677899999999999999999999985 5545443 345789999999999999999999999999999999999
Q ss_pred hcCCCceeecchhhhHHHHHHHHHH
Q 038895 165 SGDFSQIWIYWVGPLIGGGLAGLVY 189 (206)
Q Consensus 165 ~~~~~~~~vy~i~p~~Ga~~a~~l~ 189 (206)
...|+++|+||++|++|+++|+++|
T Consensus 203 ~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 203 SGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEEehHHHHHHHHHhhC
Confidence 9999999999999999999999987
No 11
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=2.2e-42 Score=291.62 Aligned_cols=185 Identities=30% Similarity=0.456 Sum_probs=161.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL------ 83 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~------ 83 (206)
..+.+.++++||+++++.+++++++||||+|||||+++++.|+++|++.+.|+++|++|+++|+++++.++++.
T Consensus 80 ~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~ 159 (294)
T PTZ00016 80 NGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGI 159 (294)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999876431
Q ss_pred -----------CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCc
Q 038895 84 -----------SIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGS 152 (206)
Q Consensus 84 -----------~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~ 152 (206)
....+.+.|+.+..++++.|+++|++|+++++.. +|+|+.......|+.+|+.+.++.++.+++||++
T Consensus 160 ~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~-~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~s 238 (294)
T PTZ00016 160 PELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAI-TDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYA 238 (294)
T ss_pred cccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHh-ccCccCCCcCcccHHHHHHHHHHHHhccCCCCCc
Confidence 0123445567788999999999999999999984 7766544345689999999999999999999999
Q ss_pred cChhhhHHHHHhh------cCCC----ceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 153 MNPARSFGPAVVS------GDFS----QIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 153 lNPAr~l~~~~~~------~~~~----~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
|||||||||+++. ..|+ ++|+||++|++|+++++++|++++.+
T Consensus 239 mNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~ 291 (294)
T PTZ00016 239 LNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPP 291 (294)
T ss_pred ccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCC
Confidence 9999999999986 2354 68999999999999999999999763
No 12
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=291.84 Aligned_cols=190 Identities=27% Similarity=0.406 Sum_probs=167.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q 038895 8 LDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---- 83 (206)
Q Consensus 8 ~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---- 83 (206)
.+..+++.++++||+++++.+|+.+++||||+|||||+++++.||++|+|++.|+++|++||++|++.+|..+.+.
T Consensus 61 g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f 140 (316)
T KOG0224|consen 61 GTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEF 140 (316)
T ss_pred CCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788889999999999999999999999999999999999999999999999999999999999999765321
Q ss_pred ------------CCccc--ccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCC
Q 038895 84 ------------SIPTH--AVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFS 149 (206)
Q Consensus 84 ------------~~~~~--~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~t 149 (206)
+-+++ .|+|.++.+++|+.|+++|.+|+..+++ .+|+|+..++.+.|+.+|+.+.++..+.+.++
T Consensus 141 ~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~a-I~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~ 219 (316)
T KOG0224|consen 141 DGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFA-ITDKRNPIPTGLHPLVIGILVVAIGMSLGYNT 219 (316)
T ss_pred cCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeE-EecCCCCCCcchhHHHHHHHHHHHHHHhhccc
Confidence 11233 3567889999999999999999999998 59988866778999999999999999999999
Q ss_pred CCccChhhhHHHHHhhc----C-------CCceeecchhhhHHHHHHHHHHHHHhcCCCC
Q 038895 150 GGSMNPARSFGPAVVSG----D-------FSQIWIYWVGPLIGGGLAGLVYGDIFIGSYT 198 (206)
Q Consensus 150 G~~lNPAr~l~~~~~~~----~-------~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~ 198 (206)
|..+||||||+||++.. . -.+.|++|++|++|+++++++|.++...+++
T Consensus 220 GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~~ 279 (316)
T KOG0224|consen 220 GYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHIP 279 (316)
T ss_pred CcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccCC
Confidence 99999999999999851 0 1368899999999999999999988764443
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.1e-39 Score=272.24 Aligned_cols=183 Identities=32% Similarity=0.524 Sum_probs=161.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 038895 11 AGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAV 90 (206)
Q Consensus 11 ~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~ 90 (206)
.+++.++++||+++++.+++++++||||+|||+|++.++.|+++|.+.++|+++|++|+++|+.+.+.+++... ..+.+
T Consensus 76 ~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-~~~~~ 154 (274)
T PLN00183 76 VGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-DLMTT 154 (274)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccC
Confidence 46778899999999999999999999999999999999999999999999999999999999999888876432 23334
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCCc
Q 038895 91 GAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQ 170 (206)
Q Consensus 91 ~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~~ 170 (206)
.+..+..++++.|+++|++|++.++.. .++++. .+...++.+|+.+.+.+++.+++||+++||||+|+|++.+..|++
T Consensus 155 ~p~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~~-~~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~~ 232 (274)
T PLN00183 155 KPAQGCSSAFWVEFIATFIVMFLAASL-TSQPQS-LGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKD 232 (274)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhee-eccccC-CCCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChhh
Confidence 455567899999999999999999874 444322 234578999999999999999999999999999999999988999
Q ss_pred eeecchhhhHHHHHHHHHHHHHhcCC
Q 038895 171 IWIYWVGPLIGGGLAGLVYGDIFIGS 196 (206)
Q Consensus 171 ~~vy~i~p~~Ga~~a~~l~~~l~~~~ 196 (206)
+|+||++|++|+++++++||+++.+.
T Consensus 233 ~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 233 IWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999997643
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=2e-39 Score=265.65 Aligned_cols=182 Identities=46% Similarity=0.770 Sum_probs=159.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Q 038895 10 PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS----- 84 (206)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~----- 84 (206)
+.+++.++++||+++.+.+++++++||+|+|||+|++.++.|+++|++.+.|+++|++|+++|+.+.+.++++..
T Consensus 31 ~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~ 110 (228)
T cd00333 31 SGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLG 110 (228)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred Cc-----c--cccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCchhHHHHHHHHHHHHHHhcCCCCCccChh
Q 038895 85 IP-----T--HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKG-PLGTIAPIAIGFIVGANILAAGPFSGGSMNPA 156 (206)
Q Consensus 85 ~~-----~--~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~-~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPA 156 (206)
.. . ..+.++.+..++++.|+++|++|++.++.. .++++. ..+...++.+|+.+....++.+++||+++|||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~-~~~~~~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPA 189 (228)
T cd00333 111 ANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFAT-TDDPNGPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPA 189 (228)
T ss_pred ccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHH-ccccccCCCCCcHHHHHHHHHHHHHHHhhcccccccCHh
Confidence 11 1 123456688999999999999999999985 554443 23457899999999999999999999999999
Q ss_pred hhHHHHHhhcC---CCceeecchhhhHHHHHHHHHHHHH
Q 038895 157 RSFGPAVVSGD---FSQIWIYWVGPLIGGGLAGLVYGDI 192 (206)
Q Consensus 157 r~l~~~~~~~~---~~~~~vy~i~p~~Ga~~a~~l~~~l 192 (206)
||+++++.++. |+++|+||++|++|+++++++|+++
T Consensus 190 r~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 190 RSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred hchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 99999999986 9999999999999999999999863
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=9.2e-39 Score=259.77 Aligned_cols=177 Identities=41% Similarity=0.701 Sum_probs=155.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Cccc
Q 038895 12 GLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS---IPTH 88 (206)
Q Consensus 12 ~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~ 88 (206)
+++.++++||+++...+++++++||+|+|||+|++.++.|+++|++...|+++|++|+++|+.+.+.++++.. ....
T Consensus 33 ~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
T TIGR00861 33 QFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVN 112 (216)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCcccc
Confidence 6888999999999999999999999999999999999999999999999999999999999999998876531 1111
Q ss_pred -ccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc
Q 038895 89 -AVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGP-LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG 166 (206)
Q Consensus 89 -~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~-~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~ 166 (206)
.+.++.+..++++.|+++|++|+++++.. .++++.. .....++.+|+.+...++..+++||+++||||++++++.++
T Consensus 113 ~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~-~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~ 191 (216)
T TIGR00861 113 GSGAAGVSSGQAFFVEFIGTAILVLVIFAT-TDPRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG 191 (216)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHhee-ecCCCCCCCCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc
Confidence 12345688999999999999999999974 5544332 22368999999999999999999999999999999999987
Q ss_pred --CCCceeecchhhhHHHHHHHHHH
Q 038895 167 --DFSQIWIYWVGPLIGGGLAGLVY 189 (206)
Q Consensus 167 --~~~~~~vy~i~p~~Ga~~a~~l~ 189 (206)
+|+++|+||++|++|+++++.+|
T Consensus 192 ~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 192 LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred cccccceeHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999875
No 16
>PLN00184 aquaporin NIP1; Provisional
Probab=99.67 E-value=2.3e-16 Score=133.37 Aligned_cols=103 Identities=24% Similarity=0.319 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCch--hHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CC
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAA-DPKKGPLGTI--APIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DF 168 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~-~~~~~~~~~~--~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~ 168 (206)
+.+..+.++.|+++|++|+++.+.... +.++...... .++.+|+.+.+.+++.+++||+|+||||++++++.++ .|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 446789999999999999999987532 2111111123 4566699999999999999999999999999999877 58
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 169 SQIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 169 ~~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
.+.|+||++|++|+++|+++++.++..
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999863
No 17
>PLN00026 aquaporin NIP; Provisional
Probab=99.67 E-value=1.6e-16 Score=134.12 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCc--hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-
Q 038895 91 GAGLNAAEGLVMEIVITFALVYTVYATAADP-KKGPLGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG- 166 (206)
Q Consensus 91 ~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~-~~~~~~~--~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~- 166 (206)
.++.+.++.++.|+++|++|+++++.....+ +...... ..++.+|+.+.+.+++.+++||+|+||||++++++.++
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~ 144 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHF 144 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCC
Confidence 3456788999999999999999998643322 2111112 23578999999999999999999999999999999876
Q ss_pred CCCceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 167 DFSQIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 167 ~~~~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
.|.+.|+||++|++|+++|+++++.++.+
T Consensus 145 ~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 145 PWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 48899999999999999999999998864
No 18
>PLN00167 aquaporin TIP5; Provisional
Probab=99.61 E-value=4.3e-15 Score=123.44 Aligned_cols=106 Identities=26% Similarity=0.406 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CC----CCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHh
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAADPKK----GP----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 164 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~----~~----~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~ 164 (206)
..+.++.++.|+++|++|++..+....+++. .. .....++.+|+.+.+.+++.+++||+++|||+++++.+.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 4467789999999999999999875432211 10 112478999999999999999999999999999999997
Q ss_pred hcC-CCceeecchhhhHHHHHHHHHHHHHhcCCCC
Q 038895 165 SGD-FSQIWIYWVGPLIGGGLAGLVYGDIFIGSYT 198 (206)
Q Consensus 165 ~~~-~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~ 198 (206)
++. |.+.|+||++|++|+++++.+++.++.+.+.
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~ 132 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV 132 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 653 8899999999999999999999988765443
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.59 E-value=4.2e-15 Score=124.45 Aligned_cols=102 Identities=24% Similarity=0.316 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCch--hHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CC
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAADPKKGP-LGTI--APIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DF 168 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~-~~~~--~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~ 168 (206)
+.+.++.++.|+++|++++++.+....+++... .... .++.+|+.+.+.+++.+++||+++||||++++++.++ .|
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~ 120 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPW 120 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCH
Confidence 567789999999999999999987533322111 1122 5678999999999999999999999999999999876 58
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhc
Q 038895 169 SQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 169 ~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
.+.|+||++|++|+++|+.+++.++.
T Consensus 121 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 146 (274)
T PLN00183 121 SKVPLYITAQTVGSVLATYVGVSVYG 146 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998876
No 20
>PLN00166 aquaporin TIP2; Provisional
Probab=99.57 E-value=8.2e-15 Score=121.43 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=84.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcC--CCC--CC--CCc--hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHh
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAAD--PKK--GP--LGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 164 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~~--~~~--~~--~~~--~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~ 164 (206)
+.+..+.++.|+++|++|+++.+....+ +.. .. ... ..++.+|+.+.+.+++.+++||+++||||++++.+.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 3566789999999999999999875332 111 10 112 356779999999999999999999999999999997
Q ss_pred hc-CCCceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 165 SG-DFSQIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 165 ~~-~~~~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
++ .|.+.|+||++|++|+++++.+++.++.+
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 54 38899999999999999999999988753
No 21
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.56 E-value=1.2e-14 Score=122.14 Aligned_cols=102 Identities=23% Similarity=0.232 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCc--hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CC
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAADPKKG-PLGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DF 168 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~-~~~~--~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~ 168 (206)
+.+..+.++.|+++|++|++..+......+.. .... ...+.+|+.+...+++.+++||+|+|||++++.++.++ .|
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~ 117 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPW 117 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCH
Confidence 45677899999999999999988753322211 1112 24568899999999999999999999999999999887 59
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhc
Q 038895 169 SQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 169 ~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
.+.|+||++|++|+++|+++.+.++.
T Consensus 118 ~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 118 YQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998875
No 22
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.54 E-value=1.8e-14 Score=122.04 Aligned_cols=102 Identities=25% Similarity=0.337 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CC-CchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CCC
Q 038895 94 LNAAEGLVMEIVITFALVYTVYATAADPKK-G-PL-GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFS 169 (206)
Q Consensus 94 ~~~~~~~~~E~~~T~~l~~~il~~~~~~~~-~-~~-~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~~ 169 (206)
.+..+.++.|+++|++++++.+....+... . .. ....++.+|+.+.+.+++.+++||+++|||+++++.+.++ .|.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~ 126 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHH
Confidence 356689999999999999988875332111 1 11 1235678899999999999999999999999999999887 589
Q ss_pred ceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 170 QIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 170 ~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
+.|.||++|++|+++|+.+.+.++++
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999888775
No 23
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.53 E-value=1.3e-14 Score=118.92 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC---CC-chhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcC-CCcee
Q 038895 98 EGLVMEIVITFALVYTVYATAADPKKGP---LG-TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD-FSQIW 172 (206)
Q Consensus 98 ~~~~~E~~~T~~l~~~il~~~~~~~~~~---~~-~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~-~~~~~ 172 (206)
|.++.|+++|+++++..+....+++... .+ ...++.+|+.+...+++.+++||+++|||+++++.+.++. |.+.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 3578999999999999987544433211 11 2467889999999999999999999999999999998763 88999
Q ss_pred ecchhhhHHHHHHHHHHHHHhcCC
Q 038895 173 IYWVGPLIGGGLAGLVYGDIFIGS 196 (206)
Q Consensus 173 vy~i~p~~Ga~~a~~l~~~l~~~~ 196 (206)
+||++|++|+++++.+++.++.++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~ 104 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGL 104 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999988754
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.53 E-value=3.2e-14 Score=116.77 Aligned_cols=98 Identities=27% Similarity=0.226 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCch--hHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CCCce
Q 038895 97 AEGLVMEIVITFALVYTVYATAADPK--KGPLGTI--APIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFSQI 171 (206)
Q Consensus 97 ~~~~~~E~~~T~~l~~~il~~~~~~~--~~~~~~~--~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~~~~ 171 (206)
.|.++.|+++|++|++..+......+ ++..... .++.+|+.+.+.+++.+++||+|+|||+++++.+.++ .|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 57899999999999998876432211 1111122 4789999999999999999999999999999999865 48899
Q ss_pred eecchhhhHHHHHHHHHHHHHhc
Q 038895 172 WIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 172 ~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
|.||++|++|+++|+.+.+.++.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~ 104 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIAS 104 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988777765
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.53 E-value=4.5e-14 Score=117.30 Aligned_cols=101 Identities=22% Similarity=0.326 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCCCc--hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhh
Q 038895 94 LNAAEGLVMEIVITFALVYTVYATAA------DPKKGPLGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVS 165 (206)
Q Consensus 94 ~~~~~~~~~E~~~T~~l~~~il~~~~------~~~~~~~~~--~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~ 165 (206)
....+.++.|+++|++|+++.+.... ++++..... ..++.+|+.+.+.+++.+++||+++||||++++.+.+
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 35678899999999999999886421 111111112 4689999999999999999999999999999999866
Q ss_pred c-CCCceeecchhhhHHHHHHHHHHHHHhc
Q 038895 166 G-DFSQIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 166 ~-~~~~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
+ .|.+.|+||++|++|+++++.+++.+..
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 3788999999999999999999987764
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.45 E-value=1.4e-13 Score=111.99 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCC--CCC----CchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhc-CCCcee
Q 038895 102 MEIVITFALVYTVYATAAD--PKK--GPL----GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFSQIW 172 (206)
Q Consensus 102 ~E~~~T~~l~~~il~~~~~--~~~--~~~----~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~-~~~~~~ 172 (206)
.|+++|+++++..+....+ +++ +.. ....++.+|+.+...+++.+++||+++|||+++++.+.++ .|.+.|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 4999999999998876443 111 111 1236888999999999999999999999999999999877 599999
Q ss_pred ecchhhhHHHHHHHHHHHHHhcCCC
Q 038895 173 IYWVGPLIGGGLAGLVYGDIFIGSY 197 (206)
Q Consensus 173 vy~i~p~~Ga~~a~~l~~~l~~~~~ 197 (206)
+||++|++|+++++.+++.++.+..
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~ 105 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLF 105 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc
Confidence 9999999999999999998887543
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.39 E-value=9.3e-13 Score=107.73 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCC-CC-chhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcC-
Q 038895 95 NAAEGLVMEIVITFALVYTVYATA---ADPK-KGP-LG-TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD- 167 (206)
Q Consensus 95 ~~~~~~~~E~~~T~~l~~~il~~~---~~~~-~~~-~~-~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~- 167 (206)
+..+.++.|+++|++|++....+. .-++ +.. .+ ....+..|+.+.+.+++.+++||+|+|||.+++.++.++-
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 345678999999999999755431 1111 111 12 2367889999999999999999999999999999998875
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHhcCCCCCCC
Q 038895 168 FSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPAS 201 (206)
Q Consensus 168 ~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~~~~ 201 (206)
|++...|+++|++|+++++.+...+++++.+..+
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 8999999999999999999888888886555443
No 28
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.38 E-value=6.3e-13 Score=110.42 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCC--chhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcC-CC
Q 038895 95 NAAEGLVMEIVITFALVYTVYATAADP--KKGPLG--TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD-FS 169 (206)
Q Consensus 95 ~~~~~~~~E~~~T~~l~~~il~~~~~~--~~~~~~--~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~-~~ 169 (206)
...|.+++||++|++|++.-+.+.... .+...+ ....+..|+.++..+++.+.+||+|+|||++++..++++. |.
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 567899999999999999877532111 111112 2346888999999999999999999999999999999886 99
Q ss_pred ceeecchhhhHHHHHHHHHHHHHhcCCCC
Q 038895 170 QIWIYWVGPLIGGGLAGLVYGDIFIGSYT 198 (206)
Q Consensus 170 ~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~ 198 (206)
.+.+|.++|++||.+++.....+|.+...
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~ 138 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYDAIN 138 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887777765443
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5e-12 Score=103.62 Aligned_cols=104 Identities=22% Similarity=0.260 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCC--chhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcC-C
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAADPKK-GPLG--TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD-F 168 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~-~~~~--~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~-~ 168 (206)
..+.+|+.+.||++|+++++..+.+....++ .... ....+..|+.+++.+++.+++||+|+|||.+++..+.++. +
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl 86 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISL 86 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcH
Confidence 4578899999999999999998875443332 1111 2367888999999999999999999999999999987765 7
Q ss_pred CceeecchhhhHHHHHHHHHHHHHhcCC
Q 038895 169 SQIWIYWVGPLIGGGLAGLVYGDIFIGS 196 (206)
Q Consensus 169 ~~~~vy~i~p~~Ga~~a~~l~~~l~~~~ 196 (206)
.+...||++|++|+++++.+.+.+.+++
T Consensus 87 ~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 87 FRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 7899999999999999999999888753
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.28 E-value=3.1e-12 Score=104.56 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=81.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC---C--Cc--hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 038895 93 GLNAAEGLVMEIVITFALVYTVYATAA--DPKKGP---L--GT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 163 (206)
Q Consensus 93 ~~~~~~~~~~E~~~T~~l~~~il~~~~--~~~~~~---~--~~--~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~ 163 (206)
+.+.+|.++.|+++|+++++..+.... +++..+ . .. ...+..|+.+...++..++.||+|+|||.+++..+
T Consensus 4 ~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l 83 (227)
T PF00230_consen 4 SPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFAL 83 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheee
Confidence 347789999999999999988765322 222111 0 11 34456688888999999999999999999999998
Q ss_pred hhcC-CCceeecchhhhHHHHHHHHHHHHHhcC
Q 038895 164 VSGD-FSQIWIYWVGPLIGGGLAGLVYGDIFIG 195 (206)
Q Consensus 164 ~~~~-~~~~~vy~i~p~~Ga~~a~~l~~~l~~~ 195 (206)
.++. |.+...|+++|++|+++|+.+.+.++++
T Consensus 84 ~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 84 TGRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eeeecccceeeEEeeccccccccccchhhcccC
Confidence 8764 8899999999999999999999988875
No 31
>PRK11562 nitrite transporter NirC; Provisional
Probab=87.33 E-value=13 Score=31.24 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhcc-CcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCc---cc
Q 038895 16 VAVAHALALFVGVAIAANI-SGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTS---GLSIP---TH 88 (206)
Q Consensus 16 ~~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~---~~~~~---~~ 88 (206)
.++.+++++...+..=+.. +| |-.....-.+.||.++++.+-.+.-=.+|=++|+.+.-++.. +...+ ..
T Consensus 61 ~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~ 137 (268)
T PRK11562 61 MGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSI 137 (268)
T ss_pred HHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHH
Confidence 3455555555555443222 11 333333446678999999888887777777777776544321 11000 00
Q ss_pred -----ccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 038895 89 -----AVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 163 (206)
Q Consensus 89 -----~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~ 163 (206)
.-.-+.+..+.|+--+++.++..+.+... ...+ ..... +.+-+.+.+.+. ..+.=+..| .--+...+
T Consensus 138 ~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~-~~~~--~~gKi--~~i~~pI~~Fv~--~GFEH~IAN-m~~~~l~~ 209 (268)
T PRK11562 138 VHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA-IRTE--GAAKF--IAIWWCLLAFIA--SGYEHSVAN-MTLFALSW 209 (268)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-Hhcc--ccchh--HHHHHHHHHHHH--cCCcchhHh-HHHHHHHH
Confidence 00112355677777777787777776653 2222 11222 222223322222 222223334 11222222
Q ss_pred hhcC-----C----CceeecchhhhHHH-HHHHHHHHHHhcCCCCCC
Q 038895 164 VSGD-----F----SQIWIYWVGPLIGG-GLAGLVYGDIFIGSYTPA 200 (206)
Q Consensus 164 ~~~~-----~----~~~~vy~i~p~~Ga-~~a~~l~~~l~~~~~~~~ 200 (206)
+... | ++...=.+|.++|+ ++-++.|.+++++++++.
T Consensus 210 ~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~ 256 (268)
T PRK11562 210 FGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPV 256 (268)
T ss_pred HccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCch
Confidence 2211 1 12233457888888 567788888887555444
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=83.06 E-value=27 Score=29.39 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh--cC--C-CCc
Q 038895 12 GLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT--SG--L-SIP 86 (206)
Q Consensus 12 ~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~--~~--~-~~~ 86 (206)
..+.-++++++++...+++=+..==+ |--.+..-...+++++++.+--++-=.+|=++|+.++.+.+ .+ . ..+
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 45555777777777777654443101 33333334567899999999888888888888888665543 11 0 111
Q ss_pred cc-----cc---CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhh
Q 038895 87 TH-----AV---GAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 158 (206)
Q Consensus 87 ~~-----~~---~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~ 158 (206)
.. .. .-+.+..+.|.--+++.++..+.+..+ ..-|... -.-+.+-+.+.. ++...+.=...|=..-
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~-~~~k~~~---~K~~~m~~pv~~--Fv~~GfeH~VANm~~i 214 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMS-YSAKDGA---AKIFAIILPVML--FVASGFEHSVANMFMI 214 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-hcccchh---hHHHHHHHHHHH--HHHcCCceeeehHHHH
Confidence 11 00 123355677777777777777777653 2222211 122333333333 3334444345552221
Q ss_pred HHHHHhhc---CCCc-ee----ecchhhhHH-HHHHHHHHHHHhcC
Q 038895 159 FGPAVVSG---DFSQ-IW----IYWVGPLIG-GGLAGLVYGDIFIG 195 (206)
Q Consensus 159 l~~~~~~~---~~~~-~~----vy~i~p~~G-a~~a~~l~~~l~~~ 195 (206)
- +..... +|.+ .+ .-.+|.++| +++-++.|++++++
T Consensus 215 ~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~ 259 (265)
T COG2116 215 P-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRK 259 (265)
T ss_pred H-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccc
Confidence 1 122222 2444 22 223555554 45567778877663
No 33
>PRK10805 formate transporter; Provisional
Probab=79.10 E-value=39 Score=28.71 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhc--CCC---Ccc
Q 038895 14 VAVAVAHALALFVGVAIAANI-SGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTS--GLS---IPT 87 (206)
Q Consensus 14 l~~~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~---~~~ 87 (206)
+..++.+.+++...+..=... +| |-..+++ .+.||.++++.+-.+.-=.+|=++|+.+.-++.. +.. .+.
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 334556666666655554333 33 6555544 6789999999886665555666666554333211 100 000
Q ss_pred c-----c---cCCcchHHHHHHHHHHHHHHHHHHHHH
Q 038895 88 H-----A---VGAGLNAAEGLVMEIVITFALVYTVYA 116 (206)
Q Consensus 88 ~-----~---~~~~~~~~~~~~~E~~~T~~l~~~il~ 116 (206)
. . ..-+.+..+.|+--+++.++..+.+..
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~ 181 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWM 181 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011345667777777888887777764
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=62.33 E-value=97 Score=26.27 Aligned_cols=101 Identities=9% Similarity=0.101 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhc--CCC---Ccc
Q 038895 13 LVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTS--GLS---IPT 87 (206)
Q Consensus 13 ~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~---~~~ 87 (206)
.+.-++.+.+++.+.+..-...==+ |=...+ -...||.++++.+-.+.-=.+|=++|+.+.-++.. +.. ...
T Consensus 67 ~ll~g~~F~vGLilIv~~g~ELfTg--N~~~~~-~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~ 143 (282)
T PRK09713 67 HLVGGLCFTLGFILLAVCGTSLFTS--SVMTVM-AKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAM 143 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCccccHH--HHHHHH-HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchh
Confidence 3444566666666665553333111 323333 35688999999985555555555555444332211 100 000
Q ss_pred -----c---ccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 038895 88 -----H---AVGAGLNAAEGLVMEIVITFALVYTVYA 116 (206)
Q Consensus 88 -----~---~~~~~~~~~~~~~~E~~~T~~l~~~il~ 116 (206)
. ...-+.+..+.|+--+++-++..+.+..
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~ 180 (282)
T PRK09713 144 WGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWM 180 (282)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112346778888888888888887775
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=61.27 E-value=3.4 Score=30.18 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.7
Q ss_pred CcccccHHHHHHHHHhcC
Q 038895 35 SGGHLNPAVTLGLAVGGN 52 (206)
Q Consensus 35 SGah~NPavTla~~l~g~ 52 (206)
|+||+||.+.++..+..+
T Consensus 8 t~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRR 25 (139)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcc
Confidence 679999999999999753
No 36
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=48.76 E-value=1.5e+02 Score=24.30 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCcc----------cccCCcchHHHHHHHHHHH
Q 038895 40 NPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTS--GL-SIPT----------HAVGAGLNAAEGLVMEIVI 106 (206)
Q Consensus 40 NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~-~~~~----------~~~~~~~~~~~~~~~E~~~ 106 (206)
|-.....-.+.||.++++.+-.+.-=.+|=++|+.+.-.+.. +. ..+. .....+.+..+.++--+++
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 444443446688999999988888777777777776544321 10 0000 0011234666777777777
Q ss_pred HHHHHHHHHH
Q 038895 107 TFALVYTVYA 116 (206)
Q Consensus 107 T~~l~~~il~ 116 (206)
.++..+.+..
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 37
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=46.03 E-value=1.7e+02 Score=24.18 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-
Q 038895 12 GLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL------S- 84 (206)
Q Consensus 12 ~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~------~- 84 (206)
..+..++.+++++...+..=+..= -=|-.+...-++.||.++++.+--+.-=.+|=++|+.+.-++.... .
T Consensus 56 ~~l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~ 133 (250)
T PF01226_consen 56 AKLVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPA 133 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 344456666666666655533331 1155655566778999999988887777777777776554432111 0
Q ss_pred C-----cccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 038895 85 I-----PTHAVGAGLNAAEGLVMEIVITFALVYTVYAT 117 (206)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~ 117 (206)
. ......-+.+.++.|+--+++.++..+.+...
T Consensus 134 ~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 134 MGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011234467788888888888888888763
No 38
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=44.07 E-value=1.8e+02 Score=25.33 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=22.7
Q ss_pred cCcc-c--ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 038895 34 ISGG-H--LNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVAC 73 (206)
Q Consensus 34 iSGa-h--~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~ 73 (206)
+.|. | ++|...-...-.|+....-.. -..+|-.|+.++.
T Consensus 183 v~g~~H~~~~Pi~~~~ia~~G~~~l~p~~-~n~aq~~Gaalav 224 (338)
T TIGR00851 183 NNAINHGIFSPLGIEQAAHTGKSILFLIE-ANPGPGLGVLLAY 224 (338)
T ss_pred HHHHHHHhhhHHHHHHHHHhCcChHHHHH-HhhhHHHHHHHHH
Confidence 3554 5 477665556566765554333 6677776666553
No 39
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.28 E-value=12 Score=32.58 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.7
Q ss_pred hccCcccccHHHHHHHHHhc
Q 038895 32 ANISGGHLNPAVTLGLAVGG 51 (206)
Q Consensus 32 ~~iSGah~NPavTla~~l~g 51 (206)
+.=+|||+.||+.++-.+..
T Consensus 8 ~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 8 GGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred cCCcHHHHHHHHHHHHHHHh
Confidence 44578999999999988864
No 40
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=32.88 E-value=32 Score=20.84 Aligned_cols=31 Identities=6% Similarity=0.136 Sum_probs=26.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcc
Q 038895 4 ADAALDPAGLVAVAVAHALALFVGVAIAANI 34 (206)
Q Consensus 4 ~~~~~~~~~~l~~~~~~g~~~~~~i~~~~~i 34 (206)
++.+.+..+|+-+.++.|-++++-++.+-.-
T Consensus 5 r~P~~~kPnWlkVGLtlGts~flW~~L~kqH 35 (49)
T PF15088_consen 5 REPPNAKPNWLKVGLTLGTSVFLWIYLIKQH 35 (49)
T ss_pred cCCCCCCCChhheeeecchHHHHHHHHHHhh
Confidence 5677888999999999999999998887543
No 41
>PRK14213 camphor resistance protein CrcB; Provisional
Probab=27.61 E-value=1.3e+02 Score=21.90 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038895 52 NITILTGIFYWIAQCLGSIVACLLLQFV 79 (206)
Q Consensus 52 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 79 (206)
+-++.++..|+..+++++++++.+-+.+
T Consensus 89 ~~~~~~a~~y~~~s~~~gl~a~~~G~~l 116 (118)
T PRK14213 89 AKRVKESILYIALTLAGSLLAFWCGWTI 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999998876544
No 42
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=27.09 E-value=54 Score=23.43 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=39.3
Q ss_pred CCccChhhhHHHHHhhcCCC---ceeecchhhhHHHHHHHHHHHHHhc
Q 038895 150 GGSMNPARSFGPAVVSGDFS---QIWIYWVGPLIGGGLAGLVYGDIFI 194 (206)
Q Consensus 150 G~~lNPAr~l~~~~~~~~~~---~~~vy~i~p~~Ga~~a~~l~~~l~~ 194 (206)
|+.++|-|.+-.-++.++.+ ...+|++.-++|+=.+..+.+++..
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~ 100 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTG 100 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 68999999999888888755 5779999999999999999998864
No 43
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=24.06 E-value=2.5e+02 Score=20.05 Aligned_cols=46 Identities=20% Similarity=0.529 Sum_probs=34.1
Q ss_pred cccccHHHHHHHH-HhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038895 36 GGHLNPAVTLGLA-VGGNI-TILTGIFYWIAQCLGSIVACLLLQFVTS 81 (206)
Q Consensus 36 Gah~NPavTla~~-l~g~~-~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 81 (206)
||-|+|--.+-.= +.|+. +..|=+.|+++-++||-.|..++.++.+
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~ 100 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTG 100 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5666666555542 33443 5778899999999999999999888764
No 44
>PRK14220 camphor resistance protein CrcB; Provisional
Probab=22.27 E-value=1.8e+02 Score=21.18 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038895 52 NITILTGIFYWIAQCLGSIVACLLLQFV 79 (206)
Q Consensus 52 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 79 (206)
+-.+.++..|+..+++++++++.+-+.+
T Consensus 89 ~~~~~~a~~y~~~s~~~gl~a~~lG~~l 116 (120)
T PRK14220 89 SKNYRVLKLYALLSYLGGLILVFCGYYL 116 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998776543
No 45
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=22.11 E-value=4.5e+02 Score=22.24 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=40.8
Q ss_pred HHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcchHHHHHHHHHHHHHH
Q 038895 47 LAVGGN----ITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFA 109 (206)
Q Consensus 47 ~~l~g~----~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~ 109 (206)
+++.|+ .|+...+-+++.|-+=+-+|+.+.....+++..............+..+.|...|++
T Consensus 87 L~lfgri~~~~pl~e~Lg~vivl~vP~sIGaAlaR~~L~~~~~~~~~~~~~~~~~~~~l~dl~~~~~ 153 (271)
T TIGR02587 87 LWLFGIITPETSLKEIVGKVAFQGVPFSLGAALARQQLGDTNQNNSLSEGKQNSEYGYLAELFAMLV 153 (271)
T ss_pred HHHHccCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHhCCCcCccccchhhhcchhhhHHHHHHHHH
Confidence 344455 479999999999999999999999888765432211111122445566666666654
No 46
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=21.94 E-value=2.2e+02 Score=18.51 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=20.1
Q ss_pred hhhHHHHHhhc--CCCceeecchhhhHHHHHHHH
Q 038895 156 ARSFGPAVVSG--DFSQIWIYWVGPLIGGGLAGL 187 (206)
Q Consensus 156 Ar~l~~~~~~~--~~~~~~vy~i~p~~Ga~~a~~ 187 (206)
..++|-++... -+.+-+-||++ +|++++-.
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIg--vgaL~G~~ 40 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIG--VGALLGFI 40 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeeh--HHHHHHHH
Confidence 36888887663 35566677875 67777744
No 47
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=21.10 E-value=2.3e+02 Score=20.95 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=23.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038895 52 NITILTGIFYWIAQCLGSIVACLLLQFV 79 (206)
Q Consensus 52 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 79 (206)
+-.+..+..|+..+++++++++.+-+..
T Consensus 96 ~~~~~~a~~y~~~s~~~gl~a~~lG~~l 123 (127)
T PRK14200 96 QGAFFKMGLNVLLNVVLSISAAWIGFQL 123 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999998876544
No 48
>PRK14205 camphor resistance protein CrcB; Provisional
Probab=20.94 E-value=2.1e+02 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 038895 52 NITILTGIFYWIAQCLGSIVACLLLQF 78 (206)
Q Consensus 52 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~ 78 (206)
+-.+.+++.|+..+++++++++.+-+.
T Consensus 88 ~~~~~~a~~y~~~s~~~gl~a~~lG~~ 114 (118)
T PRK14205 88 RKNFSTFLLYLSATYIVGILFAFLGMK 114 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999877654
No 49
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.91 E-value=1.3e+02 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=24.1
Q ss_pred CceeecchhhhHHHHHHHHH----------HHHHhcCCCCCCCCC
Q 038895 169 SQIWIYWVGPLIGGGLAGLV----------YGDIFIGSYTPASTE 203 (206)
Q Consensus 169 ~~~~vy~i~p~~Ga~~a~~l----------~~~l~~~~~~~~~~~ 203 (206)
.+.|.|.+|-.++++.-+++ ||++..=+|++.++.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 56799999999998887665 445544455665544
No 50
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.65 E-value=1.6e+02 Score=17.68 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC
Q 038895 180 IGGGLAGLVYGDIFIGSYTPASTE 203 (206)
Q Consensus 180 ~Ga~~a~~l~~~l~~~~~~~~~~~ 203 (206)
+++.+++.+++++....-++++|+
T Consensus 20 ~~~~~~~~~~Hyi~vGPn~v~ee~ 43 (44)
T PF09163_consen 20 MGATAAAGFFHYITVGPNRVEEED 43 (44)
T ss_dssp HHHHHHHHHHHHHHH--B-S-SST
T ss_pred HHHHHHHHHHHHhhcCCCCCCcCC
Confidence 444445555566655444444443
No 51
>PRK14207 camphor resistance protein CrcB; Provisional
Probab=20.48 E-value=2.6e+02 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038895 52 NITILTGIFYWIAQCLGSIVACLLLQFV 79 (206)
Q Consensus 52 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 79 (206)
+-.+.+++.|+..+++++++++.+-+..
T Consensus 93 ~~~~~~a~~y~~~s~~~gl~a~~lG~~l 120 (123)
T PRK14207 93 EREYLLALLNISANVLITISLVFLGFIL 120 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999998876543
No 52
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.32 E-value=7e+02 Score=23.19 Aligned_cols=135 Identities=25% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHhccCccccc---HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcchHHHHHHH
Q 038895 26 VGVAIAANISGGHLN---PAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVM 102 (206)
Q Consensus 26 ~~i~~~~~iSGah~N---PavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (206)
..++....-++|+.- .+|+.+++-.-..|......++...++|+.+|....+++.+... .+. .+.
T Consensus 354 ~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~-----------~f~-~L~ 421 (650)
T PF04632_consen 354 GLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLD-----------GFP-LLA 421 (650)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------cHH-HHH
Confidence 344444444455543 34444444455678899999999999999999999888875431 111 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHhhcCCCceeecchhhhHHH
Q 038895 103 EIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGG 182 (206)
Q Consensus 103 E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~~~~~~~~~vy~i~p~~Ga 182 (206)
=+++-+++...++. .++ .......++.+....... .......|++.-+-. .++.++|.
T Consensus 422 l~l~~~l~~~~~~~--~~p------~~~~~g~~~~v~f~~~~~-~~n~~~~d~~~f~n~-------------~la~l~G~ 479 (650)
T PF04632_consen 422 LVLAPFLFLGGLLM--ARP------RTAYIGLGFAVFFLLLLG-PGNPYSYDFATFLNR-------------ALAILLGI 479 (650)
T ss_pred HHHHHHHHHHHHHH--cCc------hHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHH-------------HHHHHHHH
Confidence 22222222222221 222 233445555444443332 223445555443322 35788899
Q ss_pred HHHHHHHHHHhc
Q 038895 183 GLAGLVYGDIFI 194 (206)
Q Consensus 183 ~~a~~l~~~l~~ 194 (206)
+++.+.++.+.+
T Consensus 480 ~~a~l~~~li~p 491 (650)
T PF04632_consen 480 VIAALVFRLIRP 491 (650)
T ss_pred HHHHHHHHHHCC
Confidence 999888888865
Done!