Query 038896
Match_columns 334
No_of_seqs 162 out of 2072
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 2E-06 6.7E-11 63.6 9.0 71 107-177 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 1.5E-06 5E-11 66.6 7.5 60 271-330 45-105 (137)
3 3b5d_A Multidrug transporter E 98.3 2E-05 6.8E-10 58.1 13.1 59 272-330 46-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 5E-07 1.7E-11 69.2 2.7 70 107-176 34-104 (137)
5 2l2t_A Receptor tyrosine-prote 19.4 79 0.0027 18.3 2.3 13 318-330 25-37 (44)
6 2ks1_B Epidermal growth factor 18.2 89 0.003 18.1 2.3 10 320-329 28-37 (44)
7 3l1l_A Arginine/agmatine antip 14.6 6E+02 0.02 22.1 9.6 22 311-332 409-430 (445)
8 2h3o_A MERF; membrane protein, 13.2 68 0.0023 20.1 1.0 14 320-333 43-56 (61)
9 2jwa_A Receptor tyrosine-prote 5.8 4.5E+02 0.015 15.1 2.4 6 324-329 32-37 (44)
10 2hac_A T-cell surface glycopro 4.7 5.2E+02 0.018 13.8 2.8 21 138-158 11-31 (33)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.37 E-value=2e-06 Score=63.56 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHH-hhhhHHHHHHHHHHHhhcccchhhhhhhhhhhhheeeeecCC
Q 038896 107 ATLSTVFCGSVVGGNISLRYLPVSFNQAV-GATTPFFTALFAYLMTFKREAWVTYATLVPVVAGVVIASEGE 177 (334)
Q Consensus 107 l~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~il~~~~~~e~~~~~~~~~v~l~~~G~~l~~~~~ 177 (334)
+...++++++..+...++++.|.+.+..+ .++.|+++.+++++++||+++..+++|+.+++.|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455678889999999999999999888 899999999999999999999999999999999998876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.32 E-value=1.5e-06 Score=66.60 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=43.3
Q ss_pred HHHHHHHhccchhHHHHH-hhHHHHHHHHHHHHHhCCccccchhhhHHHHHHHHHHhhhhh
Q 038896 271 LLNFLVTKHTSALTLQVL-GNAKGAVAVVISILLFRNPVTFIGIAGYTMTVLGVAAYGEAK 330 (334)
Q Consensus 271 ~~~~~~~~~~~a~~~s~~-~~l~~v~~~~~~~~~~~e~~s~~~~~G~~lii~G~~~~~~~~ 330 (334)
+....++++.++..+..+ ..+.|+++++++++++||++|+.+++|+++++.|+++.+..+
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 346777999999988887 899999999999999999999999999999999999988643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.31 E-value=2e-05 Score=58.11 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=53.3
Q ss_pred HHHHHHhccchhHHHHH-hhHHHHHHHHHHHHHhCCccccchhhhHHHHHHHHHHhhhhh
Q 038896 272 LNFLVTKHTSALTLQVL-GNAKGAVAVVISILLFRNPVTFIGIAGYTMTVLGVAAYGEAK 330 (334)
Q Consensus 272 ~~~~~~~~~~a~~~s~~-~~l~~v~~~~~~~~~~~e~~s~~~~~G~~lii~G~~~~~~~~ 330 (334)
....++++.+...+... ..+.|+.+.+++++++||++|+.+++|+++++.|+...+..+
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45567899999999777 899999999999999999999999999999999999988754
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=5e-07 Score=69.22 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHH-hhhhHHHHHHHHHHHhhcccchhhhhhhhhhhhheeeeecC
Q 038896 107 ATLSTVFCGSVVGGNISLRYLPVSFNQAV-GATTPFFTALFAYLMTFKREAWVTYATLVPVVAGVVIASEG 176 (334)
Q Consensus 107 l~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~il~~~~~~e~~~~~~~~~v~l~~~G~~l~~~~ 176 (334)
+...++++++..+.+.+++++|++.+..+ .++.|+++.++++++++|+++..+++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455678899999999999999999888 89999999999999999999999999999999999887643
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.36 E-value=79 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhh
Q 038896 318 MTVLGVAAYGEAK 330 (334)
Q Consensus 318 lii~G~~~~~~~~ 330 (334)
++..+..+|-+.+
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3343444444433
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=18.16 E-value=89 Score=18.12 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.7
Q ss_pred HHHHHHhhhh
Q 038896 320 VLGVAAYGEA 329 (334)
Q Consensus 320 i~G~~~~~~~ 329 (334)
..+..+|-+.
T Consensus 28 ~~~~~~~~RR 37 (44)
T 2ks1_B 28 ALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3333344333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=14.56 E-value=6e+02 Score=22.11 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.0
Q ss_pred chhhhHHHHHHHHHHhhhhhhh
Q 038896 311 IGIAGYTMTVLGVAAYGEAKRR 332 (334)
Q Consensus 311 ~~~~G~~lii~G~~~~~~~~~~ 332 (334)
..+.|.++++.|..+|...++|
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3556888888999888765443
No 8
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=13.22 E-value=68 Score=20.08 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhhhc
Q 038896 320 VLGVAAYGEAKRRY 333 (334)
Q Consensus 320 i~G~~~~~~~~~~~ 333 (334)
++|..+|...|+|+
T Consensus 43 figl~~Y~~~r~~~ 56 (61)
T 2h3o_A 43 FIGLTIYAIQRKRQ 56 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33777887666554
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.79 E-value=4.5e+02 Score=15.13 Aligned_cols=6 Identities=0% Similarity=-0.230 Sum_probs=2.4
Q ss_pred HHhhhh
Q 038896 324 AAYGEA 329 (334)
Q Consensus 324 ~~~~~~ 329 (334)
.+|-++
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 344433
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.65 E-value=5.2e+02 Score=13.80 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhhcccchh
Q 038896 138 TTPFFTALFAYLMTFKREAWV 158 (334)
Q Consensus 138 ~~pi~~~il~~~~~~e~~~~~ 158 (334)
.--+.-.++..++.|||+.+.
T Consensus 11 iL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 11 ILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 333445566666777777653
Done!