Query 038896
Match_columns 334
No_of_seqs 162 out of 2072
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 06:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038896.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038896hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 14.0 3E+02 0.022 22.1 16.6 88 142-232 241-329 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 11.7 82 0.006 14.4 2.5 15 313-327 2-16 (27)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 4.8 6.5E+02 0.048 19.0 16.0 17 49-65 267-283 (447)
4 d2iuba2 f.17.3.1 (A:286-349) M 3.3 3.1E+02 0.022 15.3 2.1 12 320-331 51-62 (64)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 2.8 2E+02 0.015 17.7 0.8 17 316-332 28-44 (91)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 2.7 3.8E+02 0.028 12.6 2.2 15 139-153 19-33 (34)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.6 8.5E+02 0.062 17.8 4.6 23 140-162 35-57 (248)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.3 4.9E+02 0.036 16.2 2.4 12 319-330 48-59 (107)
9 d1v54l_ f.23.6.1 (L:) Mitochon 2.2 5.6E+02 0.04 13.4 3.8 20 34-53 17-36 (46)
10 d1ffta_ f.24.1.1 (A:) Cytochro 1.9 1.6E+03 0.12 18.0 6.0 47 183-229 141-187 (501)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=14.05 E-value=3e+02 Score=22.14 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhheeeeecCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 038896 142 FTALFAYLMTFKREAWVTYATLVPVVAGVVIASEGEPGFHLY-GFIMCISATAARAFKSVLQGILLSSEGERLNSMNLLL 220 (334)
Q Consensus 142 ~~~il~~~~~~e~~~~~~~~~v~l~~~G~~l~~~~~~~~~~~-G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 220 (334)
.+..+...+.++|.+...... -.+.|.+-++......+++ ..+...++++..-...-+.|+..| -|...+....=.
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~-iDD~~~~~~vHg 317 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR-VDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCGGGHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc-cccccceEeehh
Confidence 333333334556666555332 2234554444333333444 455555555443333333333232 232345555555
Q ss_pred HHHHHHHHHHHH
Q 038896 221 YMSPIAVLVLLP 232 (334)
Q Consensus 221 ~~~~~~~i~~~~ 232 (334)
....++.+....
T Consensus 318 ~~Gi~G~l~~gl 329 (383)
T d1u7ga_ 318 VCGIVGCIMTGI 329 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 555555554433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.66 E-value=82 Score=14.36 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHhh
Q 038896 313 IAGYTMTVLGVAAYG 327 (334)
Q Consensus 313 ~~G~~lii~G~~~~~ 327 (334)
++|.+.+..|.+.|.
T Consensus 2 vlgli~~tl~glf~a 16 (27)
T d2e74g1 2 VLGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 356666666666654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=6.5e+02 Score=19.04 Aligned_cols=17 Identities=18% Similarity=-0.080 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhCCCC
Q 038896 49 IGVLLLNKYLLSNYGFR 65 (334)
Q Consensus 49 ~~~~~~~K~~~~~~~~~ 65 (334)
........++.+..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (447)
T d1pw4a_ 267 GILDWSPTYLKEVKHFA 283 (447)
T ss_dssp HHHHHHHHHBTTBSCCC
T ss_pred cchhhhhhhcccccccc
Confidence 33344455555554554
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.31 E-value=3.1e+02 Score=15.28 Aligned_cols=12 Identities=25% Similarity=0.144 Sum_probs=5.0
Q ss_pred HHHHHHhhhhhh
Q 038896 320 VLGVAAYGEAKR 331 (334)
Q Consensus 320 i~G~~~~~~~~~ 331 (334)
+.++.++.+.++
T Consensus 51 ~~~~~~~~~f~r 62 (64)
T d2iuba2 51 VIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHTTTTS
T ss_pred HHHHHHHHHHhc
Confidence 334444444443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=2e+02 Score=17.65 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhhh
Q 038896 316 YTMTVLGVAAYGEAKRR 332 (334)
Q Consensus 316 ~~lii~G~~~~~~~~~~ 332 (334)
..+.+.|.+.|...|.|
T Consensus 28 v~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYR 44 (91)
T ss_dssp TTTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHhhheeee
Confidence 34456666777655544
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.66 E-value=3.8e+02 Score=12.58 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHhhc
Q 038896 139 TPFFTALFAYLMTFK 153 (334)
Q Consensus 139 ~pi~~~il~~~~~~e 153 (334)
..++..+-.|+..+|
T Consensus 19 glv~aa~atwfvgre 33 (34)
T d2p7tc1 19 GLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccc
Confidence 334444444555444
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.64 E-value=8.5e+02 Score=17.80 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhcccchhhhhh
Q 038896 140 PFFTALFAYLMTFKREAWVTYAT 162 (334)
Q Consensus 140 pi~~~il~~~~~~e~~~~~~~~~ 162 (334)
-+.+.+..++++.+|.-..|++-
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHheEEEEEccCccceehhh
Confidence 33444445556666655555543
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.34 E-value=4.9e+02 Score=16.17 Aligned_cols=12 Identities=8% Similarity=-0.216 Sum_probs=5.8
Q ss_pred HHHHHHHhhhhh
Q 038896 319 TVLGVAAYGEAK 330 (334)
Q Consensus 319 ii~G~~~~~~~~ 330 (334)
.+.|...|...+
T Consensus 48 ~V~~~~~~~~~~ 59 (107)
T d3ehbb2 48 FVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 345555555433
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.19 E-value=5.6e+02 Score=13.38 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038896 34 TLFILSLVLLWYSSNIGVLL 53 (334)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (334)
.++....+.+++.++.+.-+
T Consensus 17 k~rLla~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchH
Confidence 45666666666555554433
No 10
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=1.87 E-value=1.6e+03 Score=18.00 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 038896 183 YGFIMCISATAARAFKSVLQGILLSSEGERLNSMNLLLYMSPIAVLV 229 (334)
Q Consensus 183 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (334)
.|..+..++++..+...+..-...|+++.+.....+..|..+.+.++
T Consensus 141 ~gl~l~gissil~~in~i~Ti~~~R~~gm~~~~~PLf~w~~~~t~il 187 (501)
T d1ffta_ 141 WSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVL 187 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhccchhheeeeeeee
Confidence 46667777888888777777766664443334445555655555554
Done!