BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038899
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana
GN=EPFL4 PE=3 SV=1
Length = 109
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/60 (85%), Positives = 53/60 (88%)
Query: 36 VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
+ KR GPGSSPPTCRSKCG+C PCKPVHVPIQPGLSMPLEYYPEAWRC CGNKLFMP
Sbjct: 50 IRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109
>sp|Q9LUH9|EPFL5_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana
GN=EPFL5 PE=3 SV=1
Length = 107
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 35 RVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFM 94
+++DQKR+ GPGS PP CR KCG+C PCK VHVPIQPGL MPLEYYPEAWRC CGNKLFM
Sbjct: 47 QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106
Query: 95 P 95
P
Sbjct: 107 P 107
>sp|Q1PEY6|EPFL6_ARATH EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana
GN=EPFL6 PE=2 SV=1
Length = 156
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 19 FVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLE 78
V+ + G + KE + ++ + G GSSPP C SKCGRC+PCKPVHVP+ PG + E
Sbjct: 82 VVIKKTRKIGDRSKEAEL--RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE 139
Query: 79 YYPEAWRCNCGNKLFMP 95
YYPEAWRC CGNKL+MP
Sbjct: 140 YYPEAWRCKCGNKLYMP 156
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 30 QEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCG 89
Q+ T ++D+K + SSPP C++KC C PCKP + + P + P +YYP+ W C+C
Sbjct: 444 QKPTTLLMDEKMGASLNSSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCH 501
Query: 90 NKLFMP 95
NK++ P
Sbjct: 502 NKIYNP 507
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 30 QEKETRVLDQKRIS---------GPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYY 80
Q++ T V+D+ + + SSPP C++KC C PCKP + + P + P +YY
Sbjct: 442 QQQPTTVMDENKGACAKGDSTCISLSSSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYY 499
Query: 81 PEAWRCNCGNKLFMP 95
P+ W C+C NK++ P
Sbjct: 500 PQKWVCSCHNKIYNP 514
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 46 GSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
GS PP C +KC CSPCK V + MP EYYP+ W C+ K++ P
Sbjct: 467 GSRPPNCTNKCHGCSPCKAKLVIVHR--IMPQEYYPQRWMCSRHGKIYHP 514
>sp|Q1G3V9|EPFL8_ARATH EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis
thaliana GN=EPFL8 PE=3 SV=1
Length = 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 17 LFFVLTQLG-TGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSM 75
+FF L L GA + R+ + S GS PP C +KC C PC P I+
Sbjct: 21 IFFSLLSLHCISGAHGHQQRM----KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDD 76
Query: 76 PLE---YYPEAWRCNCGNKLFMP 95
+ YYP W C C +++F P
Sbjct: 77 DDDSEPYYPVKWICRCRDRVFEP 99
>sp|C4B8C4|EPFL3_ARATH EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana
GN=EPFL3 PE=3 SV=1
Length = 107
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 30 QEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPI---QPGLS-MPLEYYPEAWR 85
+ KE V ++RI GS PP+C KC C PC+ + P P LS Y PE WR
Sbjct: 45 ENKEEIVKRRRRI---GSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSPHYANYQPEGWR 101
Query: 86 CNC 88
C+C
Sbjct: 102 CHC 104
>sp|Q8S8I4|EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana
GN=EPF1 PE=2 SV=1
Length = 104
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 23 QLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPE 82
+G GA +++ R D +++G S P C CG CSPC+ V V E P
Sbjct: 33 HVGMTGALKRQRRRPDTVQVAG--SRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPM 90
Query: 83 AWRCNCGNKLF 93
A++C C NK +
Sbjct: 91 AYKCMCNNKSY 101
>sp|Q9LFT5|EPFL1_ARATH EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana
GN=EPFL1 PE=2 SV=1
Length = 122
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 27/84 (32%)
Query: 36 VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQP--------------------GLSM 75
+ D+ R+ GS+PP+C ++C C PC + VP P L+
Sbjct: 42 IEDKARL---GSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTT 98
Query: 76 PLEYY----PEAWRCNCGNKLFMP 95
L+ Y P W+C+C + P
Sbjct: 99 VLDQYSNYKPMGWKCHCNGHFYNP 122
>sp|Q9T068|EPFL2_ARATH EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana
GN=EPFL2 PE=2 SV=1
Length = 128
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 25/75 (33%)
Query: 46 GSSPPTC-RSKCGRCSPCKPVHVPIQP--GLSMPL----------------------EYY 80
GS PP C R +C C C+ + VP P L PL Y
Sbjct: 54 GSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYK 113
Query: 81 PEAWRCNCGNKLFMP 95
P +W+C CGN ++ P
Sbjct: 114 PMSWKCKCGNSIYNP 128
>sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana
GN=EPF2 PE=2 SV=1
Length = 120
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 46 GSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLF 93
GSS P C CG CSPCK V + + ++ E +RC C + +
Sbjct: 70 GSSLPDCSYACGACSPCKRVMISFECSVA---ESCSVIYRCTCRGRYY 114
>sp|C4B8C5|EPFL7_ARATH EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana
GN=EPFL7 PE=2 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 44 GPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLF 93
GSS P C + CG C PCK V + S E P ++C C K +
Sbjct: 120 ASGSSIPDCSNACGPCKPCKLVVISSTCSAS---EACPLVYKCLCKGKYY 166
>sp|A1D3K3|DRE2_NEOFI Fe-S cluster assembly protein dre2 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dre2
PE=3 SV=1
Length = 320
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 33 ETRVLDQKRISGPGSSPPTCRSKCGR----CSPC 62
E +LD +S P PP CR K G+ C C
Sbjct: 203 EDNLLDDSELSAPIIQPPECRPKAGKRRRACKDC 236
>sp|Q5WHD7|RECO_BACSK DNA repair protein RecO OS=Bacillus clausii (strain KSM-K16)
GN=recO PE=3 SV=1
Length = 256
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 10 SFTAFTFLFFVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPI 69
+F F +L L Q+ TG E R++D K + G+ P C R PV +
Sbjct: 108 TFFLFDWLLLALRQINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETRDPVAFSV 167
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3
Length = 2157
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 28 GAQEKETRVLDQKRIS--GPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWR 85
G E+ T + R+S PGS+P T K C + P PG S ++ Y +A R
Sbjct: 1246 GQLERPTSLALDSRVSPPAPGSAPETPEDKSKPCGSPRVQEKPDSPGGSTQIQRYLDAER 1305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,704,697
Number of Sequences: 539616
Number of extensions: 1493148
Number of successful extensions: 4662
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4636
Number of HSP's gapped (non-prelim): 24
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)