Query 038899
Match_columns 95
No_of_seqs 100 out of 137
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2liy_A Epidermal patterning fa 97.4 8.6E-05 2.9E-09 44.9 2.7 42 45-89 1-44 (45)
2 2l3i_A Aoxki4A, antimicrobial 72.9 0.81 2.8E-05 25.2 0.2 8 80-87 4-11 (30)
3 2gjv_A Putative cytoplasmic pr 58.7 2.8 9.4E-05 31.1 0.7 22 35-56 106-127 (175)
4 1ag7_A Conotoxin GS; neurotoxi 49.1 6.7 0.00023 22.0 1.1 10 43-52 3-13 (34)
5 1eyo_A Conotoxin TVIIA; cystin 42.5 10 0.00034 20.8 1.2 10 43-52 3-13 (30)
6 1xrd_A LH-1, light-harvesting 31.2 42 0.0015 20.3 2.8 19 2-20 8-26 (52)
7 2lx0_A Membrane fusion protein 30.5 35 0.0012 18.7 2.1 13 8-20 15-27 (32)
8 1df9_C Bowman-BIRK type trypsi 22.0 58 0.002 20.8 2.3 19 46-64 20-45 (72)
9 3j21_g 50S ribosomal protein L 18.9 23 0.00079 21.1 -0.1 11 83-93 28-39 (51)
10 3h0g_I DNA-directed RNA polyme 17.7 2.2E+02 0.0074 18.5 4.5 40 50-91 69-109 (113)
No 1
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=97.42 E-value=8.6e-05 Score=44.89 Aligned_cols=42 Identities=33% Similarity=0.869 Sum_probs=35.4
Q ss_pred CCCCCCccc-CCCCCC-CCCcceeeeCCCCCCCCCCccccceeeccC
Q 038899 45 PGSSPPTCR-SKCGRC-SPCKPVHVPIQPGLSMPLEYYPEAWRCNCG 89 (95)
Q Consensus 45 ~GS~PP~C~-~KC~~C-~PC~aV~Vp~~~~~~~~~eY~P~~WKCkCg 89 (95)
|||+.|+|. |-|..| .-|.+.|||+......++.| -|||.|+
T Consensus 1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAY---hY~CvCh 44 (45)
T 2liy_A 1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYRCVCH 44 (45)
T ss_dssp CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCE---EEEEEEE
T ss_pred CCccCCceeehhhcCcccccceeeccccCCCcccchh---eeEeEec
Confidence 699999997 689999 67999999998776666666 4899986
No 2
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=72.88 E-value=0.81 Score=25.18 Aligned_cols=8 Identities=38% Similarity=1.605 Sum_probs=7.1
Q ss_pred cccceeec
Q 038899 80 YPEAWRCN 87 (95)
Q Consensus 80 ~P~~WKCk 87 (95)
+|-+||||
T Consensus 4 cpkswkck 11 (30)
T 2l3i_A 4 CPKSWKCK 11 (30)
T ss_dssp SSSCSCCC
T ss_pred CCcchhHH
Confidence 68999997
No 3
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=58.72 E-value=2.8 Score=31.12 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.1
Q ss_pred hhhhhhcccCCCCCCCcccCCC
Q 038899 35 RVLDQKRISGPGSSPPTCRSKC 56 (95)
Q Consensus 35 ~~~~~~r~~~~GS~PP~C~~KC 56 (95)
.++|+-|+...|=+||+|..+|
T Consensus 106 ~~LD~VRlaL~Gf~ppdC~r~~ 127 (175)
T 2gjv_A 106 NALDRLRRSLGGIELPDCDRPL 127 (175)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCC
T ss_pred HHHHHHHHHHcCccCCCCCCcc
Confidence 5688999899999999998776
No 4
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=49.08 E-value=6.7 Score=21.96 Aligned_cols=10 Identities=70% Similarity=1.438 Sum_probs=7.9
Q ss_pred cCCCCC-CCcc
Q 038899 43 SGPGSS-PPTC 52 (95)
Q Consensus 43 ~~~GS~-PP~C 52 (95)
++.||+ ||.|
T Consensus 3 sgrgsrcppqc 13 (34)
T 1ag7_A 3 SGRGSRCPPQC 13 (34)
T ss_dssp BCTTSCSSSCB
T ss_pred cCCCCCCChhh
Confidence 467999 8887
No 5
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=42.50 E-value=10 Score=20.80 Aligned_cols=10 Identities=60% Similarity=1.222 Sum_probs=7.8
Q ss_pred cCCCCC-CCcc
Q 038899 43 SGPGSS-PPTC 52 (95)
Q Consensus 43 ~~~GS~-PP~C 52 (95)
++.||+ ||.|
T Consensus 3 sgr~srcpp~c 13 (30)
T 1eyo_A 3 SGRDSRCPPVC 13 (30)
T ss_dssp BCTTSSCSSSB
T ss_pred cCCCCCCCchh
Confidence 457898 8887
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=31.22 E-value=42 Score=20.32 Aligned_cols=19 Identities=21% Similarity=0.523 Sum_probs=14.5
Q ss_pred cchhhhHHHHHHHHHHHHH
Q 038899 2 WRHRRLLSSFTAFTFLFFV 20 (95)
Q Consensus 2 ~~~r~~l~~~~~~~fl~~~ 20 (95)
+.+||.|.++.+|.|.+-+
T Consensus 8 fDPrr~Lva~~~fl~vlAl 26 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLAL 26 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHH
Confidence 4689998888888776655
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=30.49 E-value=35 Score=18.74 Aligned_cols=13 Identities=46% Similarity=0.794 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 038899 8 LSSFTAFTFLFFV 20 (95)
Q Consensus 8 l~~~~~~~fl~~~ 20 (95)
|.|+.+|.|-+|-
T Consensus 15 lltflafgfwlfk 27 (32)
T 2lx0_A 15 LLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666654
No 8
>1df9_C Bowman-BIRK type trypsin inhibitor; beta barrels, catalytic triad, inhibitor complex, multiple conformation, virus/viral protein/inhibitor; 2.10A {Vigna radiata var} PDB: 2qid_C 3myw_I
Probab=22.00 E-value=58 Score=20.84 Aligned_cols=19 Identities=37% Similarity=0.978 Sum_probs=11.0
Q ss_pred CCCCCccc------CCCCC-CCCCcc
Q 038899 46 GSSPPTCR------SKCGR-CSPCKP 64 (95)
Q Consensus 46 GS~PP~C~------~KC~~-C~PC~a 64 (95)
-|.||.|+ +.|.+ |..|.-
T Consensus 20 rS~PP~CrC~D~~~~~C~saCk~C~c 45 (72)
T 1df9_C 20 KSIPPQCHCANIRLNSCHSACKSCIC 45 (72)
T ss_dssp SSBSCCBBCCBCSSSCCCTTCSCEEE
T ss_pred CCCCCCceeecCCcCccchhhcCccc
Confidence 35688773 45554 666654
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=18.87 E-value=23 Score=21.12 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=6.9
Q ss_pred ceeec-cCCCCC
Q 038899 83 AWRCN-CGNKLF 93 (95)
Q Consensus 83 ~WKCk-Cg~klf 93 (95)
.|+|+ ||.+.+
T Consensus 28 aw~CrKCG~~~l 39 (51)
T 3j21_g 28 AKKCRKCGYKRL 39 (51)
T ss_dssp CSSCSSSSSCCC
T ss_pred ceecCCCCCccc
Confidence 57765 776644
No 10
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=17.74 E-value=2.2e+02 Score=18.49 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCcceeeeCCCCCCCCCCccccceeec-cCCC
Q 038899 50 PTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCN-CGNK 91 (95)
Q Consensus 50 P~C~~KC~~C~PC~aV~Vp~~~~~~~~~eY~P~~WKCk-Cg~k 91 (95)
|.-..+|..|+.=+++-.-.+..+.. |--.+-++|. ||.+
T Consensus 69 p~~~~~Cp~C~~~~a~~~q~q~rsad--e~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 69 PRSDKECPRCHQHEAVFYQTHSRRGD--TMMTLIYVCVHCGFA 109 (113)
T ss_dssp CBCCSCCSSSCCSCEEEECCCCSSCC--CCCCCEEEESSSCCC
T ss_pred CCcccCCCCCCCceEEEEEEecccCC--CCCeeEEEcCCCCCE
Done!