Query 038899
Match_columns 95
No_of_seqs 100 out of 137
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 06:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038899.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038899hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gjva1 d.323.1.2 (A:1-134) Pu 53.2 1.8 0.00013 29.2 0.7 23 35-57 82-104 (134)
2 d1ag7a_ g.3.6.1 (A:) Conotoxin 49.1 3.2 0.00023 22.0 1.1 10 43-52 3-13 (34)
3 d1xrda1 f.3.1.1 (A:1-52) Light 46.5 8.2 0.00059 22.2 2.8 20 1-20 7-26 (52)
4 d2fug11 a.29.12.1 (1:334-438) 26.1 4.9 0.00036 25.0 -0.7 9 55-63 19-27 (105)
5 d1qypa_ g.41.3.1 (A:) RBP9 sub 22.7 51 0.0037 18.3 3.6 42 48-91 10-52 (57)
6 d2axti1 f.23.37.1 (I:1-35) Pho 20.7 51 0.0037 17.2 3.0 11 15-25 18-28 (35)
7 d2j0141 d.325.1.2 (4:1-50) Rib 20.5 9.9 0.00072 21.2 -0.0 15 78-92 8-22 (50)
8 d2dmda2 g.37.1.1 (A:8-33) Zinc 18.7 21 0.0015 17.7 1.0 11 54-64 2-12 (26)
9 d1i25a_ g.3.6.2 (A:) Huwentoxi 16.6 19 0.0014 19.1 0.6 8 81-88 24-31 (37)
10 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 16.1 17 0.0012 22.3 0.3 10 83-92 40-49 (85)
No 1
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=53.22 E-value=1.8 Score=29.18 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.1
Q ss_pred hhhhhhcccCCCCCCCcccCCCC
Q 038899 35 RVLDQKRISGPGSSPPTCRSKCG 57 (95)
Q Consensus 35 ~~~~~~r~~~~GS~PP~C~~KC~ 57 (95)
..+|+-|+...|=+||+|..||.
T Consensus 82 ~~LD~vR~aL~Gf~ppdC~~~l~ 104 (134)
T d2gjva1 82 NALDRLRRSLGGIELPDCDRPLW 104 (134)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCE
T ss_pred HHHHHHHHHHcCccCCCCCccch
Confidence 46788888888999999988763
No 2
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=49.08 E-value=3.2 Score=21.96 Aligned_cols=10 Identities=70% Similarity=1.438 Sum_probs=7.9
Q ss_pred cCCCCC-CCcc
Q 038899 43 SGPGSS-PPTC 52 (95)
Q Consensus 43 ~~~GS~-PP~C 52 (95)
++.||+ ||.|
T Consensus 3 sgrgsrcppqc 13 (34)
T d1ag7a_ 3 SGRGSRCPPQC 13 (34)
T ss_dssp BCTTSCSSSCB
T ss_pred cCCCCCCChhh
Confidence 467999 8887
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=46.54 E-value=8.2 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=15.5
Q ss_pred CcchhhhHHHHHHHHHHHHH
Q 038899 1 MWRHRRLLSSFTAFTFLFFV 20 (95)
Q Consensus 1 ~~~~r~~l~~~~~~~fl~~~ 20 (95)
++.+||+|.++.+|.|+|-+
T Consensus 7 ~fDPRr~lva~~~fL~~LAl 26 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLAL 26 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHH
Confidence 35689999888888777665
No 4
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=26.08 E-value=4.9 Score=25.03 Aligned_cols=9 Identities=56% Similarity=2.058 Sum_probs=7.7
Q ss_pred CCCCCCCCc
Q 038899 55 KCGRCSPCK 63 (95)
Q Consensus 55 KC~~C~PC~ 63 (95)
-||+|.||.
T Consensus 19 SCGkC~PCR 27 (105)
T d2fug11 19 SCGKCTPCR 27 (105)
T ss_dssp CCSCCHHHH
T ss_pred cCCCCCcch
Confidence 599999994
No 5
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=22.67 E-value=51 Score=18.30 Aligned_cols=42 Identities=21% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCCcccCCCCCCCCCcceeeeCCCCCCCCCCccccceee-ccCCC
Q 038899 48 SPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRC-NCGNK 91 (95)
Q Consensus 48 ~PP~C~~KC~~C~PC~aV~Vp~~~~~~~~~eY~P~~WKC-kCg~k 91 (95)
..|.-.-+|..|+.=+++-+-.+..+. +|--.+-+.| +||.+
T Consensus 10 ~~pt~~~~CpkC~~~~a~~~~~QtRsa--DE~~T~fy~C~~Cg~~ 52 (57)
T d1qypa_ 10 TLPTTKITCPKCGNDTAYWWEMQTRAG--DEPSTIFYKCTKCGHT 52 (57)
T ss_dssp SSCEEECCCTTTCCSEEEEEEECCSSS--SCSSEEEEEESSSCCE
T ss_pred cCCcccCCCCCCCCCceEEEEeecccc--cCCCeEEEEeCCCCCc
Confidence 356667899999999998887766543 2444455666 57654
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.74 E-value=51 Score=17.22 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=6.5
Q ss_pred HHHHHHHHHhc
Q 038899 15 TFLFFVLTQLG 25 (95)
Q Consensus 15 ~fl~~~~~~~~ 25 (95)
.|+|+|+|.-.
T Consensus 18 lFiFGFLSnDP 28 (35)
T d2axti1 18 LFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHTTCT
T ss_pred HHHHhhccCCC
Confidence 56666665443
No 7
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=20.53 E-value=9.9 Score=21.18 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=13.2
Q ss_pred CccccceeeccCCCC
Q 038899 78 EYYPEAWRCNCGNKL 92 (95)
Q Consensus 78 eY~P~~WKCkCg~kl 92 (95)
+|++..-+|.||+.+
T Consensus 8 ~y~~v~~~cscg~~f 22 (50)
T d2j0141 8 KLVPARIICGCGNVI 22 (50)
T ss_dssp CCTTTTTCTTSCGGG
T ss_pred CCEEEEEEECCCCEE
Confidence 799999999999864
No 8
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.69 E-value=21 Score=17.70 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=8.6
Q ss_pred CCCCCCCCCcc
Q 038899 54 SKCGRCSPCKP 64 (95)
Q Consensus 54 ~KC~~C~PC~a 64 (95)
+||..|+-|+.
T Consensus 2 hkc~~c~kcfs 12 (26)
T d2dmda2 2 HKCEVCGKCFS 12 (26)
T ss_dssp CCBTTTTBCCC
T ss_pred CccchhhhHhc
Confidence 68888888863
No 9
>d1i25a_ g.3.6.2 (A:) Huwentoxin-II {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=16.63 E-value=19 Score=19.12 Aligned_cols=8 Identities=25% Similarity=1.144 Sum_probs=5.7
Q ss_pred ccceeecc
Q 038899 81 PEAWRCNC 88 (95)
Q Consensus 81 P~~WKCkC 88 (95)
--+||||-
T Consensus 24 ~ggwkck~ 31 (37)
T d1i25a_ 24 KGGWKCKF 31 (37)
T ss_dssp CTTEEECS
T ss_pred CCCceEeE
Confidence 34899973
No 10
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.12 E-value=17 Score=22.31 Aligned_cols=10 Identities=40% Similarity=1.384 Sum_probs=7.7
Q ss_pred ceeeccCCCC
Q 038899 83 AWRCNCGNKL 92 (95)
Q Consensus 83 ~WKCkCg~kl 92 (95)
.++|+||+.|
T Consensus 40 ~~~CrCg~~F 49 (85)
T d1wffa_ 40 SFECRCGNNF 49 (85)
T ss_dssp CEECTTCCEE
T ss_pred CeecCCCCEe
Confidence 5799999754
Done!