BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038900
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 47 CKNAEYGCNEMLGYLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
CK A GC L + EK DHE+ C+ P C CP + C + GS + H QH++
Sbjct: 9 CKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 65
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 47 CKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQN 101
CK A GC L + EK +HE+ C+ P SCP G C + GS + H QH++
Sbjct: 6 CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 62
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 47 CKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQN 101
CK A GC L + EK +HE+ C+ P SCP G C + GS + H QH++
Sbjct: 7 CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 63
>pdb|1HDK|A Chain A, Charcot-Leyden Crystal Protein- Pcmbs Complex
Length = 141
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 26 PIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSGC--D 83
P+ YT L + +V+ K C YL+ + H + + S C
Sbjct: 4 PVPYTE----AASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEMKEESDIVFHFQVCFGR 59
Query: 84 FLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRLDAKNDKFLVLLEGR 130
+ +S+ Y ++ Q ++ ++PF+ Q+F + + DK+ V++ G+
Sbjct: 60 RVVMNSREYGAWKQQVESKNMPFQDGQEFELSISVLPDKYQVMVNGQ 106
>pdb|1QKQ|A Chain A, Charcot-Leyden Crystal Protein - Mannose Complex
pdb|1G86|A Chain A, Charcot-Leyden Crystal ProteinN-Ethylmaleimide Complex
pdb|1LCL|A Chain A, Charcot-Leyden Crystal Protein
Length = 142
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 26 PIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSGC--D 83
P+ YT L + +V+ K C YL+ + H + + S C
Sbjct: 5 PVPYTE----AASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEMKEESDIVFHFQVCFGR 60
Query: 84 FLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRLDAKNDKFLVLLEGR 130
+ +S+ Y ++ Q ++ ++PF+ Q+F + + DK+ V++ G+
Sbjct: 61 RVVMNSREYGAWKQQVESKNMPFQDGQEFELSISVLPDKYQVMVNGQ 107
>pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit
pdb|1EG0|A Chain A, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|1C05|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Minimized Average
Structure)
pdb|1C06|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Ensemble Of 16
Structures)
Length = 159
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 120 NDKFLVLLEGRDDNILFVLHNARSNQQQNGL 150
+ F++LLE R DN+++ L AR+ +Q L
Sbjct: 42 GENFMILLESRLDNLVYRLGLARTRRQARQL 72
>pdb|2HFT|A Chain A, The Crystal Structure Of The Extracellular Domain Of Human
Tissue Factor At 1.7 Angstroms Resolution
Length = 218
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 119 KNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNEYKISVTFGSN 174
+N+ FL L + ++++ L+ +S+ Q+ G S +++ NE+ I V G N
Sbjct: 136 RNNTFLSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGKKTAKTNTNEFLIDVDKGEN 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,528,824
Number of Sequences: 62578
Number of extensions: 237025
Number of successful extensions: 606
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 15
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)