BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038900
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84K34|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana
GN=At5g37930 PE=2 SV=1
Length = 349
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 18/231 (7%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C+NGH+ CT C +K++N CP PI Y R R +EK++E+ + VSC NA+YGC E Y
Sbjct: 127 CDNGHLACTLCCTKVRN-RCPSCTLPIGYVRCRAMEKVIEASR-VSCLNAKYGCKESTSY 184
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRLDAKN 120
+ HE+ C +PCSCP+ C + G L H RA+H++ + F ++ +I LD N
Sbjct: 185 GNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDL-N 243
Query: 121 DKFLVLLEGRDDNILFV-----LHNARSNQQQNGLSISCISSSREARNEYKISVTFGSNN 175
K +L E D +++ V LH +S+SCI+ ++S
Sbjct: 244 KKTTILQEENDGHVIVVQVFRALHAVY-------VSVSCIAPLTPGVG--RLSCRLAKIT 294
Query: 176 VSTLTFRS-AISSSKKQLDNLPKLGFPLVPWLLDATDGRLNLKICIFKDRL 225
V +L + + + +K + P+ GF L+P L + + LNL+I I R+
Sbjct: 295 VDSLLKQGFMVKNIQKVTNEHPEDGFMLIPSYLFSGNDNLNLQIWIGHGRI 345
>sp|Q9FKD9|SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis
thaliana GN=At5g37870 PE=3 SV=1
Length = 281
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 11/224 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH+ C++C K++N CP P+ + R R +E++LESV V C+ A+ GC + + Y
Sbjct: 59 CGNGHLACSSCCPKLRNK-CPACALPVGHIRCRAMERVLESVL-VPCRYADLGCTKTIYY 116
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQ-DFSIRLDAK 119
++ HEK C SPCSCP+ GC++ GS LY+H+ H S + ++ + +
Sbjct: 117 GRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFI 176
Query: 120 NDKFLVLLEGRDDNILFVLHNARSNQQQNG--LSISCISSSREARNEYKISVTFGSNNVS 177
+DK L+ + +LFV+ + ++ G +S+SCI+ S E+ + + +
Sbjct: 177 SDKILI-ERVYEKKLLFVV---QCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGV 232
Query: 178 TLTFRSA-ISSSKKQLDNLPKLGFPLVPWLLDATDGRLNLKICI 220
T+T++S + K PK F L+P L L + +CI
Sbjct: 233 TMTYQSPKVKKVLKVSSQRPKDSFMLIPHSL-LCGPLLGMMLCI 275
>sp|Q9C6H2|SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana
GN=At1g66630 PE=2 SV=1
Length = 303
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 28/241 (11%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C+NGH+ C++C K+K CP+ I + R+R++EK++E+V VSC NA+YGC E + Y
Sbjct: 63 CDNGHIACSSCCKKVKYK-CPYCSLRIGFFRSRILEKIVEAV-VVSCPNAKYGCTEKIPY 120
Query: 61 LEKND--HEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRLDA 118
+++ HE+ C+ + C CP C + G + LY+H+ A+H+ F+ + + L
Sbjct: 121 DNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAWLHV 180
Query: 119 KNDK--FLVLLEGRDDNILFVLHNARSNQQQNGL--SISCISSSREARNEYKISVTFGSN 174
+K FLVL E D ++ V + + + +G+ +++CI+ E+ + + N
Sbjct: 181 TGEKLSFLVLQEYEDGPLVVV----QCSMESHGICVTVNCIAPCAPGVGEFSCHLIY-RN 235
Query: 175 NVSTLTFRSAIS------SSKKQLDNLPKLGFPL---------VPWLLDATDGRLNLKIC 219
+TF S S + + N + + L +P+ L L ++IC
Sbjct: 236 GSEKITFESKKMNKIQKVSPENHVANYKPIPYYLRGEASNFMSIPYYLLDEASILKMQIC 295
Query: 220 I 220
I
Sbjct: 296 I 296
>sp|Q9C6H3|SINL2_ARATH E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana
GN=At1g66620 PE=2 SV=1
Length = 313
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C+NGH+ C++C +K++N CP PI R+R++E+++E+V V+C N ++GC E Y
Sbjct: 58 CDNGHIACSSCCTKLRNK-CPSCALPIGNFRSRIMERVVEAVM-VTCPNVKHGCTEKFSY 115
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQ----DFSIRL 116
++ HEK C+ + C CP C++ G LY HF H ++ ++Q +F+
Sbjct: 116 GKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNHYDT-----WNQIGCGNFAGAW 170
Query: 117 DAKNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNE--YKISVTFGSN 174
++K LVL G+ L + + Q ++++CI+ E +++S
Sbjct: 171 LRISEKILVLQYGQGP--LIAVQCFKETQGMY-VTVNCIAPCAPGVGELSFELSYKMPMG 227
Query: 175 NVSTLTFRS-AISSSKKQLDNLPKLGFPLVPWLLDATDGRLNLKICIFK 222
ST+ F+S ++ +K P+ F LVP+ L ++ICI K
Sbjct: 228 GNSTMMFKSEEMNRIQKVSFQTPEKDFMLVPYYFLGDFSTLKMEICIRK 276
>sp|Q9FKD7|SINL7_ARATH E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana
GN=At5g37890 PE=2 SV=1
Length = 286
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 10/222 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C+NGH+ C++C K+ N+ CP SP+ + R R +E +LES+ + C NA+ GC + + Y
Sbjct: 65 CDNGHLACSSCCPKL-NNKCPACTSPVGHNRCRAMESVLESIL-IPCPNAKLGCKKNVSY 122
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQ--NSSVPFRYDQDFSIRLDA 118
++ HEK C S C+CP C++ S LY H+R H N F D S+R++
Sbjct: 123 GKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNI 182
Query: 119 KNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNEYKISVTFGSNNVST 178
+ K L+ E N LF + R +++SCI+ S ++Y ++++ + +
Sbjct: 183 -SKKILIRTE-HLTNHLFAVQCFREPYGVY-VTVSCIAPSSPELSQYSYALSYTVDGHTV 239
Query: 179 LTFRSAISSSKKQLDNLPKLGFPLVPWLL---DATDGRLNLK 217
+ + K P+ F L+P L D + R+++K
Sbjct: 240 IYQSPEVKRVLKLSFQTPQENFMLIPNSLLRGDVLEMRISVK 281
>sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana
GN=At1g66650 PE=2 SV=1
Length = 329
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH+ C C K+K C F + PI R R +EK++++ VSC NA YGC + Y
Sbjct: 100 CNNGHLACFLCCIKLKK-RCSFCKLPIGDVRCRAMEKVIKA-GLVSCSNAIYGCKQSTTY 157
Query: 61 LEK-NDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNS-----SVPFRYDQDFSI 114
+ HEK C +PCSCP+ C+++G L HFRA H+ S S F F +
Sbjct: 158 GNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHFRATHKVSPGDINSFVFDRPVIFGL 217
Query: 115 RLDAKNDKFLVLLEGRDDNILFV 137
LD+ +DK ++ +E + N+ V
Sbjct: 218 DLDS-SDKMVIFVEEKQGNLFVV 239
>sp|Q9FKD5|SINL9_ARATH Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis
thaliana GN=At5g37910 PE=3 SV=1
Length = 276
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C+NGH+ C +C K+ N CP P+ ++R+R +E +LES+ + C N +GC + Y
Sbjct: 52 CDNGHLACGSCCPKLSNK-CPACTLPVGHSRSRAMESVLESIL-IPCPNVRFGCTKSFFY 109
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+++ HEK C S CSCP S CD+ GS LY H++ H
Sbjct: 110 GKESAHEKECIFSQCSCPSSVCDYTGSYKDLYAHYKLTHST 150
>sp|Q8I147|SINA_DROWI E3 ubiquitin-protein ligase sina OS=Drosophila willistoni GN=sina
PE=3 SV=1
Length = 331
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC +CRSK+ CP R P+A RN +EK+ +VK CK++ YGC L Y
Sbjct: 104 CSSGHLVCVSCRSKLT--CCPTCRGPLANIRNLAMEKVASNVK-FPCKHSGYGCTASLVY 160
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
EK +HE+ C+ P C CP + C + G + QH H++ + D F I
Sbjct: 161 TEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDIN 220
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHNARS--NQQQNGLSISCISSSREARN 163
L D ++++ + + VL QQ + I S +EA N
Sbjct: 221 LPGAVD-WVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAEN 269
>sp|P21461|SINA_DROME E3 ubiquitin-protein ligase sina OS=Drosophila melanogaster GN=sina
PE=1 SV=2
Length = 314
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC +CRSK+ CP R P+A RN +EK+ +VK CK++ YGC L Y
Sbjct: 87 CSSGHLVCVSCRSKLT--CCPTCRGPLANIRNLAMEKVASNVK-FPCKHSGYGCTASLVY 143
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
EK +HE+ C+ P C CP + C + G + QH H++ + D F I
Sbjct: 144 TEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDIN 203
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHNARS--NQQQNGLSISCISSSREARN 163
L D ++++ + + VL QQ + I S +EA N
Sbjct: 204 LPGAVD-WVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAEN 252
>sp|P61093|SINA_DROER E3 ubiquitin-protein ligase sina OS=Drosophila erecta GN=sina PE=3
SV=1
Length = 314
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC +CRSK+ CP R P+A RN +EK+ +VK CK++ YGC L Y
Sbjct: 87 CSSGHLVCVSCRSKLT--CCPTCRGPLANIRNLAMEKVASNVK-FPCKHSGYGCTASLVY 143
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
EK +HE+ C+ P C CP + C + G + QH H++ + D F I
Sbjct: 144 TEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDIN 203
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHNARS--NQQQNGLSISCISSSREARN 163
L D ++++ + + VL QQ + I S +EA N
Sbjct: 204 LPGAVD-WVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAEN 252
>sp|P29304|SINA_DROVI E3 ubiquitin-protein ligase sina OS=Drosophila virilis GN=sina PE=3
SV=1
Length = 314
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC +CRSK+ CP R P+A RN +E++ +VK CK++ YGC L Y
Sbjct: 87 CSSGHLVCVSCRSKLT--CCPTCRGPLANIRNLAMEEVASNVK-FPCKHSGYGCTASLVY 143
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
EK +HE+ C+ P C CP + C + G + QH H++ + D F I
Sbjct: 144 TEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDIN 203
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHNARS--NQQQNGLSISCISSSREARN 163
L D ++++ + + VL QQ + I S +EA N
Sbjct: 204 LPGAVD-WVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAEN 252
>sp|Q9FM14|SIL11_ARATH E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana
GN=At5g62800 PE=2 SV=2
Length = 314
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 16/186 (8%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRS--PIAYTRNRVIEKLLESVKSVSCKNAEYGCNEML 58
C++GH+VC C +K+ N CP PI R +E++LES V C+N E+GC + +
Sbjct: 57 CDDGHIVCNFCFAKVSN-KCPGPGCDLPIGNKRCFAMERVLESA-FVPCQNTEFGCTKSV 114
Query: 59 GYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFS---IR 115
Y + + HEK C +S CSCP C++ GS + +Y HF +H +S +S +
Sbjct: 115 SYEKVSSHEKECNYSQCSCPNLECNYTGSYNIIYGHFMRRHLYNSTIVSSKWGYSTVDVL 174
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSIS----CISSSREARNEYKISVTF 171
++ K +K VL E R +LFV+ + ++++G+ ++ +S + Y++S +
Sbjct: 175 INIK-EKVSVLWESR-QKLLFVV---QCFKERHGVYVTVRRIAPPASEFKKFSYRLSYSI 229
Query: 172 GSNNVS 177
+NV+
Sbjct: 230 DGHNVT 235
>sp|Q7XA77|SINL5_ARATH E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana
GN=At1g66660 PE=2 SV=2
Length = 328
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH+ C++C K+ N C F R I R R +EK++E+ V C NA++GC E Y
Sbjct: 100 CSNGHLACSSCCQKL-NKKCSFCRCNIGDIRCRAMEKVIEA-SIVPCPNAKHGCKETTTY 157
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRLDAKN 120
++ HEK CK CSCP+S C+++ S S L H S+ + D +L
Sbjct: 158 CNQSSHEKVCKFVRCSCPVSNCNYVSSYSNL-----KSHACSTAHVWGEDDIHFQLVIDR 212
Query: 121 DKFLVLLEGRDDNILF 136
+ + GR ++F
Sbjct: 213 PRIFNMNLGRKKTVVF 228
>sp|Q86MW9|SINA_SCHMA E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA
PE=1 SV=1
Length = 371
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC +CRSK+ SCP R + RN +EKL SV CK + GC E Y
Sbjct: 140 CQSGHIVCASCRSKLS--SCPTCRGNLDNIRNLAMEKLASSVL-FPCKYSTSGCPETFHY 196
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
K++HE AC++ P C CP + C +LG Q+ H H++ + D F I
Sbjct: 197 TSKSEHEAACEYRPYDCPCPGASCKWLGELEQVMPHLVHHHKSITTLQGEDIVFLATDIS 256
Query: 116 LDAKND----------KFLVLLEGRD---DNILFVL 138
L D F+++LE ++ D I F L
Sbjct: 257 LPGAVDWVMMQSCFGHSFMLVLEKQERVPDQIFFAL 292
>sp|Q9FKD6|SINL8_ARATH E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana
GN=At5g37900 PE=1 SV=2
Length = 263
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 37/217 (17%)
Query: 1 CENGHMVCTTCRSKIKND--SCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEML 58
CENGH+ C++C K++N +CP +E +LES+ V+C N +GC E
Sbjct: 49 CENGHLACSSCCPKLRNKCPACP-------------MENILESIL-VTCPNDMFGCTESF 94
Query: 59 GYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQN----------SSVPFRY 108
Y +K+ HE+ C S CSCP C++ G LY H++ H + SS+P++
Sbjct: 95 LYGKKSTHEEECIFSLCSCPSLDCEYSGRYEDLYDHYKLTHISNSYWTTNCFRSSIPYKA 154
Query: 109 DQDFSIRLDAKNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNEYKIS 168
S ++ + + ILF + R + +++SCI+ S ++
Sbjct: 155 PMLISDKIQ--------ITRVYEKKILFAVQCFRESCGVY-VTVSCIAPSAPEVGQFSYQ 205
Query: 169 VTFGSNNVSTLTFRSA-ISSSKKQLDNLPKLGFPLVP 204
+++ + T+ +RS + +K P+ F L+P
Sbjct: 206 ISYTVDE-HTMVYRSPQMKRVRKVSFETPQENFMLIP 241
>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1
SV=2
Length = 282
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC+ CR K+ CP R P+ RN +EK+ SV CK A GC L +
Sbjct: 55 CQSGHLVCSNCRPKLT--CCPTCRGPLGSIRNLAMEKVANSVL-FPCKYASSGCEITLPH 111
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
EK DHE+ C+ P C CP + C + GS + H QH++
Sbjct: 112 TEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 154
>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1
PE=1 SV=2
Length = 282
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC+ CR K+ CP R P+ RN +EK+ SV CK A GC L +
Sbjct: 55 CQSGHLVCSNCRPKLT--CCPTCRGPLGSIRNLAMEKVANSVL-FPCKYASSGCEITLPH 111
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
EK +HE+ C+ P C CP + C + GS + H QH++
Sbjct: 112 TEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 154
>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1
SV=1
Length = 282
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC+ CR K+ CP R P+ RN +EK+ SV CK A GC L +
Sbjct: 55 CQSGHLVCSNCRPKLT--CCPTCRGPLGSIRNLAMEKVANSVL-FPCKYASSGCEITLPH 111
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
EK +HE+ C+ P C CP + C + GS + H QH++
Sbjct: 112 TEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 154
>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2
Length = 282
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC+ CR K+ CP R P+ RN +EK+ SV CK A GC L +
Sbjct: 55 CQSGHLVCSNCRPKLT--CCPTCRGPLGSIRNLAMEKVANSVL-FPCKYASSGCEVTLPH 111
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+K +HE+ C+ P C CP + C + GS + H QH++
Sbjct: 112 TDKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLLHQHKS 154
>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2
SV=2
Length = 282
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C++GH+VC+ CR K+ CP R P+ RN +EK+ SV CK + GC L +
Sbjct: 55 CQSGHLVCSNCRPKLT--CCPTCRGPLGSIRNLAVEKVANSVL-FPCKYSASGCEITLPH 111
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+K +HE+ C+ P C CP + C + GS + H QH++
Sbjct: 112 TKKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 154
>sp|A8X679|SIAH1_CAEBR E3 ubiquitin-protein ligase siah-1 OS=Caenorhabditis briggsae
GN=siah-1 PE=3 SV=2
Length = 434
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 18/233 (7%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC+ CR K++ CP R P RN +EK+ +V+ CK + GC +
Sbjct: 185 CPSGHLVCSNCRPKLQ--CCPTCRGPTPSVRNLGLEKIANTVR-FPCKFSNSGCPLNFHH 241
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
++K DHE+ C++ P C CP + C + G+ + + H + H++ + D F I
Sbjct: 242 IDKMDHEELCEYRPYSCPCPGASCKWQGALADVMDHLKKVHKSITTLQGEDIVFLATDIN 301
Query: 116 LDAKNDKFLVLLEGRDDNILFVLHN------ARSNQQQNGLSISCISSSREARN-EYKIS 168
L D ++++ D N + VL A+S Q + + I S +EA N Y++
Sbjct: 302 LPGAVD-WVMMQSCFDYNFMLVLEKQEKYDPAQSTQMFYAV-VQLIGSKKEADNFVYRLE 359
Query: 169 VTFGSNNVS-TLTFRSAISSSKKQLDNLPKLGFPLVPWLLDATDGRLNLKICI 220
++ +S T RS + L F L A +G L + + I
Sbjct: 360 LSANRRRMSWEATPRSIHEGVAFAIQQSDCLAFDTSAAQLFAENGNLGINVTI 412
>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana
GN=SINAT3 PE=2 SV=1
Length = 326
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH +C+TC++++ N CP R + R +EK+ ES++ + CK+ GC E+ Y
Sbjct: 77 CHNGHTLCSTCKARVHN-RCPTCRQELGDIRCLALEKVAESLE-LPCKHMSLGCPEIFPY 134
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQ 100
K HE C P SCP +G C G L H R H+
Sbjct: 135 YSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHK 176
>sp|Q8T3Y0|SINAL_DROME Probable E3 ubiquitin-protein ligase sinah OS=Drosophila
melanogaster GN=sinah PE=1 SV=2
Length = 351
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C GH++C+TCRSK+ CP R + R+ +EK+ + CK++ +GC L Y
Sbjct: 120 CPRGHLICSTCRSKLT--ICPVCRVFMTNIRSLAMEKVASKL-IFPCKHSHFGCRARLSY 176
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQN 101
EK HE+ C+ P CP C + G +YQH + H+N
Sbjct: 177 AEKTKHEEDCECRPYFCPYPDDKCSWQGPLRDVYQHLMSSHEN 219
>sp|Q965X6|SIAH1_CAEEL E3 ubiquitin-protein ligase siah-1 OS=Caenorhabditis elegans
GN=siah-1 PE=1 SV=3
Length = 419
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 16/239 (6%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C +GH+VC+ CR K++ CP R P RN +EK+ +V+ CK + GC +
Sbjct: 170 CSSGHLVCSNCRPKLQ--CCPTCRGPTPSVRNLGLEKIANTVR-FPCKFSTSGCPLNFHH 226
Query: 61 LEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SIR 115
+K +HE+ C+ P C CP + C + G S + +H + H++ + D F I
Sbjct: 227 ADKTEHEELCEFRPYCCPCPGASCKWQGGLSDVMEHLKKIHKSITTLQGEDIVFLATDIN 286
Query: 116 LDAKNDKFLVLLEGRDDNILFVL-----HNARSNQQQNGLSISCISSSREARN-EYKISV 169
L D ++++ D N + VL ++ Q + I S +EA N Y++ +
Sbjct: 287 LPGAVD-WVMMQSCFDYNFMLVLEKQEKYDPAQPTQMFYAVVQLIGSKKEADNFVYRLEL 345
Query: 170 TFGSNNVS-TLTFRSAISSSKKQLDNLPKLGFPLVPWLLDATDGRLNLKICIFKDRLPH 227
+ +S T RS + L F L A +G L + + I + P
Sbjct: 346 SASRRRMSWEATPRSIHEGVVVAIQQSDCLAFDSNAAQLFAENGNLGINVTISRIDTPQ 404
>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana
GN=SINAT4 PE=2 SV=1
Length = 327
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH +C+TC+ ++ N CP R + R +EK+ ES++ + CK GC E+ Y
Sbjct: 78 CHNGHTLCSTCKVRVHN-RCPTCRQELGDIRCLALEKVAESLE-LPCKFYNLGCPEIFPY 135
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQ 100
K HE C P SCP +G C +G L H R H+
Sbjct: 136 YSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHK 177
>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana
GN=SINAT5 PE=1 SV=2
Length = 309
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH +C+TC+S++ N CP R + R +EK+ ES++ + CK GC + Y
Sbjct: 60 CHNGHTLCSTCKSRVHN-RCPTCRQELGDIRCLALEKVAESLE-LPCKYYNLGCLGIFPY 117
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQ 100
K HE C P SCP +G C +G + L H R H+
Sbjct: 118 YSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHK 159
>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana
GN=SINAT2 PE=2 SV=1
Length = 308
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH +C+ C+ +++N +CP R + R +EK+ ES++ V C+ GC+++ Y
Sbjct: 74 CPNGHTLCSNCKLRVQN-TCPTCRYELGNIRCLALEKVAESLE-VPCRYQNLGCHDIFPY 131
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQ 100
K HE+ C+ P +CP +G C G L H + H+
Sbjct: 132 YSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHK 173
>sp|Q9I8X5|SIAH2_XENLA E3 ubiquitin-protein ligase siah2 OS=Xenopus laevis GN=siah2 PE=2
SV=1
Length = 313
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 9/180 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYT-RNRVIEKLLESVKSVSCKNAEYGCNEMLG 59
C+ GH+VC CR K+ CP R+ + + RN +EK+ +V CK A GC+ L
Sbjct: 83 CQAGHLVCNQCRQKL--SCCPTCRASLTPSIRNLAMEKVASAVL-FPCKYASTGCSLSLH 139
Query: 60 YLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF---SI 114
+ EK +HE C++ P C CP + C + GS + QH H++ + D F I
Sbjct: 140 HTEKPEHEDICEYRPYSCPCPGASCKWQGSLENVMQHLTHSHKSITTLQGEDIVFLATDI 199
Query: 115 RLDAKNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNEYKISVTFGSN 174
L D ++ +L + + Q +I + +R+ Y + N
Sbjct: 200 NLPGAVDWVMMQYCFNHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENYAYRLELNGN 259
>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana
GN=SINAT1 PE=3 SV=1
Length = 305
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY 60
C NGH +C++C+ +++N +CP R + R +EK+ ES++ V C+ GC ++ Y
Sbjct: 71 CPNGHTLCSSCKLRVQN-TCPTCRYELGNIRCLALEKVAESLE-VPCRYQNLGCQDIFPY 128
Query: 61 LEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQ 100
K HE+ C+ SCP +G C G L H + H+
Sbjct: 129 YSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHK 170
>sp|O43255|SIAH2_HUMAN E3 ubiquitin-protein ligase SIAH2 OS=Homo sapiens GN=SIAH2 PE=1
SV=1
Length = 324
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYT-RNRVIEKLLESVKSVSCKNAEYGCNEMLG 59
C+ GH+VC CR K+ CP R + + RN +EK+ +V CK A GC+ L
Sbjct: 94 CQAGHLVCNQCRQKL--SCCPTCRGALTPSIRNLAMEKVASAVL-FPCKYATTGCSLTLH 150
Query: 60 YLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+ EK +HE C++ P C CP + C + GS + H H++
Sbjct: 151 HTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKS 194
>sp|Q8R4T2|SIAH2_RAT E3 ubiquitin-protein ligase SIAH2 OS=Rattus norvegicus GN=Siah2
PE=1 SV=2
Length = 325
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYT-RNRVIEKLLESVKSVSCKNAEYGCNEMLG 59
C+ GH+VC CR K+ CP R + + RN +EK+ +V CK A GC+ L
Sbjct: 95 CQAGHLVCNQCRQKL--SCCPTCRGALTPSIRNLAMEKVASAVL-FPCKYATTGCSLTLH 151
Query: 60 YLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+ EK +HE C++ P C CP + C + GS + H H++
Sbjct: 152 HTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKS 195
>sp|Q06986|SIAH2_MOUSE E3 ubiquitin-protein ligase SIAH2 OS=Mus musculus GN=Siah2 PE=1
SV=2
Length = 325
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYT-RNRVIEKLLESVKSVSCKNAEYGCNEMLG 59
C+ GH+VC CR K+ CP R + + RN +EK+ +V CK A GC+ L
Sbjct: 95 CQAGHLVCNQCRQKL--SCCPTCRGALTPSIRNLAMEKVASAVL-FPCKYATTGCSLTLH 151
Query: 60 YLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+ EK +HE C++ P C CP + C + GS + H H++
Sbjct: 152 HTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKS 195
>sp|Q7SYL3|SIAH2_DANRE E3 ubiquitin-protein ligase Siah2 OS=Danio rerio GN=siah2l PE=2
SV=2
Length = 331
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1 CENGHMVCTTCRSKIKNDSCPFDRSPIAYT-RNRVIEKLLESVKSVSCKNAEYGCNEMLG 59
C+ GH+VC CR K+ CP R P+ + RN +EK+ S CK + GC L
Sbjct: 103 CQAGHLVCNQCRQKL--SCCPTCRGPLTPSIRNLAMEKV-ASTLPFPCKYSSAGCLLSLH 159
Query: 60 YLEKNDHEKACKHSP--CSCPLSGCDFLGSSSQLYQHFRAQHQN 101
+ EK +HE+ C+ P C CP + C + GS ++ H H++
Sbjct: 160 HSEKPEHEEVCEFRPYTCPCPGASCKWQGSLEEVMPHLMHAHKS 203
>sp|Q9C6H4|SINL1_ARATH E3 ubiquitin-protein ligase SINA-like 1 OS=Arabidopsis thaliana
GN=At1g66610 PE=2 SV=1
Length = 366
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 53 GCNEMLGYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDF 112
GC E Y + HEK C + C CP C++ G LY H+ A H+ F
Sbjct: 185 GCTETFSYGNELVHEKKCSFALCYCPAPNCNYAGVYKDLYSHYAANHKKLWTRFSCGYSM 244
Query: 113 SIRLDAKNDKFLVLLEGRDDNILFVLHNARSNQQQNGLSISCISSSREARNEYKISVTFG 172
+ +D ++ ++L+ D L VL + Q +++CI+ S ++ +++
Sbjct: 245 HVCMDFESKS--LVLQQYSDGPLVVLQCFKEPPQGLFWTVNCIAPSAPGVGKFSYELSYS 302
Query: 173 SNNVSTLTFRSA-ISSSKKQLDNLPKLGFPLVP-WLLDATDGRLNLKICI 220
+ +TLTFRS+ ++ +K P+ F +P ++L ICI
Sbjct: 303 TAG-NTLTFRSSEMNRIQKVSFQTPEKDFMFIPEYILCPMGLYKGTYICI 351
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1
Length = 318
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 5 HMVCTTCRSK--IKNDSCPFDRSPIAYTRNRVIEKLLESVKS---VSCKNAEYGCNEMLG 59
H C C ++ + CP DR+ + R + +++ ++ S +SC NA +GC L
Sbjct: 36 HAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLR 95
Query: 60 YLEKNDHEKACKHS---PCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRL 116
+ H K C+H+ P +C GC ++ H +H S V + + +
Sbjct: 96 LDQLQSHLKDCEHNPKRPVTCE-EGCGLEMPKDEMPNHNCIKHLRSVVQQQQTKIADLEK 154
Query: 117 DAKNDKFLVLLEGRDDNIL 135
A K + + RD +L
Sbjct: 155 TAAEHKHQLAEQKRDIQLL 173
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 5 HMVCTTCRSKI--KNDSCPFDRSPIAYTRNRVIEKLLESVKS---VSCKNAEYGCNEMLG 59
H C C ++ + +CP DRS + R + +++ ++ S ++C NA +GC+ ++
Sbjct: 36 HAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVR 95
Query: 60 YLEKNDHEKACKHS---PCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRL 116
H C+H+ P +C GC +L H +H S V + + +
Sbjct: 96 LDNLMSHLSDCEHNPKRPVTCE-QGCGLEMPKDELPNHNCIKHLRSVVQQQQSRIAELEK 154
Query: 117 DAKNDKFLVLLEGRDDNIL 135
+ K + + RD +L
Sbjct: 155 TSAEHKHQLAEQKRDIQLL 173
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 5 HMVCTTCRSKI--KNDSCPFDRSPIAYTRNRVIEKLLESVKS---VSCKNAEYGCNEMLG 59
H C C ++ + +CP DRS + R + +++ ++ S ++C NA +GC+ ++
Sbjct: 36 HAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVR 95
Query: 60 YLEKNDHEKACKHS---PCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRL 116
H C+H+ P +C GC +L H +H S V + + +
Sbjct: 96 LDNLMSHLSDCEHNPKRPVTCE-QGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEK 154
Query: 117 DAKNDKFLVLLEGRDDNIL 135
+ K + + RD +L
Sbjct: 155 TSAEHKHQLAEQKRDIQLL 173
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 5 HMVCTTCRSKI--KNDSCPFDRSPIAYTRNRVIEKLLESVKS---VSCKNAEYGCNEMLG 59
H C C ++ + +CP DRS + R + +++ ++ S ++C NA +GC+ ++
Sbjct: 36 HAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVR 95
Query: 60 YLEKNDHEKACKHS---PCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRL 116
H C+H+ P +C GC +L H +H S V + + +
Sbjct: 96 LDNLMSHLSDCEHNPKRPVTCE-QGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEK 154
Query: 117 DAKNDKFLVLLEGRDDNIL 135
+ K + + RD +L
Sbjct: 155 TSAEHKHQLAEQKRDIQLL 173
>sp|Q54FB9|Y0971_DICDI TNF receptor-associated factor family protein DDB_G0290971
OS=Dictyostelium discoideum GN=DDB_G0290971 PE=3 SV=1
Length = 445
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 1 CENGHMVCTTCRSK--IKNDSCPFDRSPI----AYTRNRVIEKLLESVKSVSCKNAEY-- 52
C +GH+ C +C S + C R+P+ +RNR IE K V C N+ +
Sbjct: 42 CRDGHLACKSCWSDSLLNKKECMICRTPVNSMNELSRNRFIENEFLK-KKVYCPNSFFFI 100
Query: 53 --------------------GCNEMLGYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLY 92
GC E++ H+ C+ CP +GCD + Q+
Sbjct: 101 ENVNVDDSSMNEALIRDESNGCKEIITVEALEKHQVECQFRFEKCPFTGCDKILRLKQIA 160
Query: 93 QHFRAQHQNSSVPFRYDQDFSIRLDA 118
+H +S D++ +LDA
Sbjct: 161 EHKIDCKFSSKYCLHCDKEIPGQLDA 186
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 5 HMVCTTC--RSKIKNDSCPFDRSPIAYTRNRVIEKLLESVK--SVSCKNAEYGCNEMLGY 60
H+ C C R + ++CP R + + + KL +++ V CKNA GC +
Sbjct: 37 HIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEVNKLRKTIGRLQVKCKNAAAGCLDTHPL 96
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSS 103
+ +H+ +C +CP GC L +H + QN
Sbjct: 97 AHRKEHQDSCPFELMACPNEGCTVQVLRGVLDEHRQHCQQNGQ 139
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 5 HMVCTTCRSKI--KNDSCPFDRSPIAYTRNRVIEKLLESVKS---VSCKNAEYGCNEMLG 59
H C C ++ + +CP DRS + R + +++ ++ S ++C NA +GC ++
Sbjct: 36 HAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQITCDNAVFGCTTIVR 95
Query: 60 YLEKNDHEKACKHS---PCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIRL 116
H C+H+ P +C GC ++ H +H S V + + +
Sbjct: 96 LDNLMSHLSDCEHNPKRPVTCE-QGCGLEMPKDEVPNHNCIKHLRSVVQQQQIRIGELEK 154
Query: 117 DAKNDKFLVLLEGRDDNIL 135
A K + + RD +L
Sbjct: 155 TAAESKHQLSEQKRDIQLL 173
>sp|P47264|Y018_MYCGE Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG018 PE=3 SV=3
Length = 1031
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 90 QLYQHFRAQHQNSSVPFRYDQDFSIRLDAKNDKFLVLLEGRDDNILFVLHNARSNQQQNG 149
QL + + Q++N+S+ F DQ S+ + K +L E + DNILF+ RS + NG
Sbjct: 185 QLNKTKQMQYENNSLLFNLDQFLSLVKEVKKPSLFLLNEDKTDNILFL----RSQHKING 240
Query: 150 LSISC 154
LS C
Sbjct: 241 LSHVC 245
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 5 HMVCTTC--RSKIKNDSCPFDRSPIAYTRNRVIEKLLESVK--SVSCKNAEYGCNEMLGY 60
H+ C C R + +CP R + + + + KL + + V C+NAE GC
Sbjct: 37 HIFCKKCILRWLARQKTCPCCRKEVRHRKMVHVNKLQKIIGRLEVKCRNAEAGCQVTCPL 96
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQH 94
+ H+ +C CP GC L +H
Sbjct: 97 AHRKGHQDSCPFELMVCPNEGCMLRVPRGALDEH 130
>sp|Q1ZXR0|Y8444_DICDI TNF receptor-associated factor family protein DDB_G0268444
OS=Dictyostelium discoideum GN=DDB_G0268444 PE=2 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 24/121 (19%)
Query: 1 CENGHMVCTTC--RSKIKNDSCPFDRSPI----AYTRNRVIEKLLESVKSVSCKNA---- 50
C+ H C TC S K C R + +RNR IE+ ++K V+C N+
Sbjct: 43 CKEIHWFCKTCWAESLFKKKECMICRCIVKSISELSRNRFIEQDFLNIK-VNCPNSFKYI 101
Query: 51 -------------EYGCNEMLGYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRA 97
E GC +++ E H K CK + C GC+ + +Q+ +H +
Sbjct: 102 DENKNNNNKIKDLENGCKDIITIGEIEKHLKQCKFTHIKCKFIGCNKIIRLNQVEKHEKE 161
Query: 98 Q 98
Q
Sbjct: 162 Q 162
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 5 HMVCTTC--RSKIKNDSCPFDRSPIAYTRNRVIEKLLESVK--SVSCKNAEYGCNEMLGY 60
H+ C C R + +CP R + + + KL +++ V CKNA+ GC
Sbjct: 37 HIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPL 96
Query: 61 LEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNS 102
+ H+ +C +CP GC L +H + Q S
Sbjct: 97 AHRKGHQDSCPFELTACPNEGCTSQVPRGTLAEHRQHCQQGS 138
>sp|Q557K0|Y3509_DICDI TNF receptor-associated factor family protein
DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum
GN=DDB_G0273433 PE=3 SV=1
Length = 450
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 1 CENGHMVCTTCRSK---IKND--SCPFDRSPIAYTRNRVIEKLLESVKSVSCKNA----- 50
C NGH+ C C ++ IK + SC P +RN +E ++K V C N
Sbjct: 48 CRNGHISCHECWNRQLSIKQECPSCKVKTLPSELSRNIFLENAFRALK-VICPNKFKESK 106
Query: 51 --------EYGCNEMLGYLEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQH 94
E GC E+L H K C++ CP + C ++ +Q+ H
Sbjct: 107 FQGEAVHCENGCPEILKVELLEHHLKECQYQFIKCPNNSNKCKYIIRKNQIEHH 160
>sp|Q08CH8|CYHR1_DANRE Cysteine and histidine-rich protein 1 OS=Danio rerio GN=cyhr1 PE=2
SV=1
Length = 375
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 75/209 (35%), Gaps = 67/209 (32%)
Query: 1 CENGHMVCTTC--------RSKIKNDSCPFDRSPIAYT---RNRVIEKLLESVKS----- 44
C NGH++C C R K + +CP R I+ + RN +EK + + S
Sbjct: 96 CTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECSYC 155
Query: 45 ---------------------VSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSGCD 83
CK GC + E + HE C H +G +
Sbjct: 156 LKQFPRSGLDRHQTEECQDRVTQCKYKRIGCPWQGPFHELSAHEAECCHP----SKTGME 211
Query: 84 FLGSSSQLYQHFRAQHQ--NSSV----------------PFRYDQDFSIRLDAKNDKFLV 125
+G ++ Q R + Q NS P+R D DF RL + +F V
Sbjct: 212 LMGILDEMDQSHRRELQLYNSIFSLLCFEKIGFTEVQFRPYRTD-DFITRLYYETPRFTV 270
Query: 126 LLEGRDDNILFVLHNARSNQQQNGLSISC 154
L N +VL AR N + ++SC
Sbjct: 271 L------NQTWVL-KARVNDSERNPNLSC 292
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 4 GHMVCTTCRSKIKNDSCPFDRSPI 27
GH VC C +K+ +CPFD++ I
Sbjct: 34 GHTVCKMCLNKLHRKACPFDQTTI 57
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 4 GHMVCTTCRSKIKNDSCPFDRSPI 27
GH VC C +K+ +CPFD++ I
Sbjct: 34 GHTVCKMCLNKLHRKACPFDQTTI 57
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 4 GHMVCTTCRSKIKNDSCPFDRSPI 27
GH VC C +K+ +CPFD++ I
Sbjct: 34 GHTVCKMCLNKLHRKACPFDQTTI 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,516,580
Number of Sequences: 539616
Number of extensions: 3106670
Number of successful extensions: 8448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8292
Number of HSP's gapped (non-prelim): 111
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)