Query 038900
Match_columns 230
No_of_seqs 210 out of 735
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 1.9E-36 6.6E-41 249.7 8.6 179 38-223 1-193 (193)
2 3hcs_A TNF receptor-associated 99.7 7E-19 2.4E-23 141.5 5.1 103 1-108 34-142 (170)
3 3hct_A TNF receptor-associated 99.3 9.9E-13 3.4E-17 99.4 3.3 70 2-74 35-110 (118)
4 1rmd_A RAG1; V(D)J recombinati 99.3 3.3E-12 1.1E-16 96.0 4.2 69 2-73 40-115 (116)
5 3knv_A TNF receptor-associated 99.2 2E-12 6.9E-17 100.9 -1.2 67 2-71 48-130 (141)
6 2yre_A F-box only protein 30; 97.9 1.5E-05 5.2E-10 57.8 6.0 71 4-77 13-97 (100)
7 2yre_A F-box only protein 30; 97.8 8.4E-06 2.9E-10 59.1 2.5 53 41-97 35-89 (100)
8 2yuc_A TNF receptor-associated 97.8 1E-05 3.5E-10 55.7 2.7 53 42-101 15-68 (76)
9 3ztg_A E3 ubiquitin-protein li 97.7 1.5E-05 5.2E-10 56.6 2.1 45 3-48 32-84 (92)
10 2y43_A E3 ubiquitin-protein li 97.6 1.3E-05 4.5E-10 57.8 1.0 42 2-43 40-86 (99)
11 1jm7_B BARD1, BRCA1-associated 97.6 4.4E-05 1.5E-09 56.9 3.6 42 2-43 40-84 (117)
12 3fl2_A E3 ubiquitin-protein li 97.5 3.9E-05 1.3E-09 57.6 1.9 42 2-43 69-117 (124)
13 1t1h_A Gspef-atpub14, armadill 97.4 1.8E-05 6.3E-10 54.4 -0.1 42 2-43 25-72 (78)
14 1e4u_A Transcriptional repress 97.4 2.8E-05 9.5E-10 54.1 0.8 29 1-29 31-62 (78)
15 2yuc_A TNF receptor-associated 97.4 1.4E-05 4.7E-10 55.0 -1.2 48 60-108 2-49 (76)
16 1z6u_A NP95-like ring finger p 97.3 6.5E-05 2.2E-09 58.6 2.0 42 2-43 95-143 (150)
17 2ckl_A Polycomb group ring fin 97.3 5.1E-05 1.8E-09 55.6 1.2 42 2-43 33-83 (108)
18 4ayc_A E3 ubiquitin-protein li 97.3 5.9E-05 2E-09 57.8 1.5 41 2-42 70-117 (138)
19 3lrq_A E3 ubiquitin-protein li 97.3 4.8E-05 1.6E-09 55.1 0.7 40 2-41 40-85 (100)
20 1g25_A CDK-activating kinase a 97.2 7.1E-05 2.4E-09 49.6 1.0 27 2-28 25-54 (65)
21 1bor_A Transcription factor PM 97.2 0.00016 5.4E-09 46.7 2.5 26 2-28 23-48 (56)
22 2ckl_B Ubiquitin ligase protei 97.2 0.00011 3.6E-09 58.0 2.0 42 2-43 72-120 (165)
23 2egp_A Tripartite motif-contai 97.2 2.7E-05 9.3E-10 53.5 -1.4 28 2-29 29-65 (79)
24 2csy_A Zinc finger protein 183 97.0 0.00012 4E-09 50.7 0.3 41 2-42 32-76 (81)
25 2ecv_A Tripartite motif-contai 97.0 4.8E-05 1.6E-09 52.7 -2.0 27 2-28 36-70 (85)
26 2ea6_A Ring finger protein 4; 96.9 0.00017 5.7E-09 47.9 0.5 27 2-28 39-67 (69)
27 1jm7_A BRCA1, breast cancer ty 96.9 7.9E-05 2.7E-09 54.6 -1.4 27 2-28 38-69 (112)
28 3ng2_A RNF4, snurf, ring finge 96.9 0.00016 5.5E-09 48.4 0.2 28 2-29 34-63 (71)
29 3l11_A E3 ubiquitin-protein li 96.9 0.00039 1.3E-08 51.3 2.2 41 2-42 32-85 (115)
30 2xeu_A Ring finger protein 4; 96.9 0.00016 5.4E-09 47.3 -0.1 28 2-29 27-56 (64)
31 1iym_A EL5; ring-H2 finger, ub 96.8 0.00035 1.2E-08 44.4 1.5 26 3-28 27-54 (55)
32 2djb_A Polycomb group ring fin 96.8 0.00019 6.3E-09 48.6 0.1 28 2-29 33-62 (72)
33 2ecy_A TNF receptor-associated 96.8 0.00025 8.6E-09 47.0 0.7 28 2-29 32-62 (66)
34 2ecw_A Tripartite motif-contai 96.8 6.1E-05 2.1E-09 52.2 -2.6 37 2-38 36-83 (85)
35 2ysl_A Tripartite motif-contai 96.8 0.00029 1E-08 47.4 0.9 28 2-29 37-69 (73)
36 2d8t_A Dactylidin, ring finger 96.8 0.00023 7.9E-09 47.9 0.3 27 2-28 32-60 (71)
37 2kr4_A Ubiquitin conjugation f 96.8 0.00031 1.1E-08 49.4 0.9 42 2-43 31-77 (85)
38 1chc_A Equine herpes virus-1 r 96.8 0.00027 9.3E-09 47.0 0.6 28 2-29 23-52 (68)
39 2ect_A Ring finger protein 126 96.8 0.00039 1.4E-08 47.5 1.3 28 2-29 35-64 (78)
40 4ic3_A E3 ubiquitin-protein li 96.7 0.00041 1.4E-08 47.3 1.2 26 2-29 41-67 (74)
41 2ecm_A Ring finger and CHY zin 96.7 0.00026 8.9E-09 44.9 0.0 27 2-28 26-54 (55)
42 2ecg_A Baculoviral IAP repeat- 96.7 0.0004 1.4E-08 47.4 0.8 26 2-29 42-68 (75)
43 1x4j_A Ring finger protein 38; 96.6 0.00039 1.3E-08 47.3 0.5 28 2-29 43-72 (75)
44 2kiz_A E3 ubiquitin-protein li 96.6 0.00032 1.1E-08 46.8 -0.1 28 2-29 34-63 (69)
45 3hcs_A TNF receptor-associated 96.6 0.0014 4.6E-08 51.7 3.5 50 41-97 108-158 (170)
46 2kre_A Ubiquitin conjugation f 96.6 0.00065 2.2E-08 49.3 1.4 42 2-43 46-92 (100)
47 2ea5_A Cell growth regulator w 96.5 0.00081 2.8E-08 45.2 1.5 26 2-29 32-58 (68)
48 2d9k_A FLN29 gene product; zin 96.5 0.00026 8.9E-09 48.4 -1.1 47 45-97 18-64 (75)
49 2vje_B MDM4 protein; proto-onc 96.5 0.00038 1.3E-08 46.1 -0.4 28 2-29 26-56 (63)
50 2yho_A E3 ubiquitin-protein li 96.5 0.00078 2.7E-08 46.6 1.2 26 2-29 35-61 (79)
51 2ep4_A Ring finger protein 24; 96.4 0.00047 1.6E-08 46.6 -0.1 28 2-29 35-64 (74)
52 2vje_A E3 ubiquitin-protein li 96.4 0.00054 1.9E-08 45.4 0.1 28 2-29 27-57 (64)
53 2yur_A Retinoblastoma-binding 96.3 0.00059 2E-08 46.3 -0.0 26 3-28 34-63 (74)
54 3vk6_A E3 ubiquitin-protein li 96.3 0.0021 7.1E-08 46.5 2.8 67 2-103 19-89 (101)
55 2ct2_A Tripartite motif protei 96.3 0.00065 2.2E-08 47.3 0.0 28 2-29 36-68 (88)
56 1wgm_A Ubiquitin conjugation f 96.3 0.0013 4.4E-08 47.5 1.6 42 2-43 39-86 (98)
57 2ecn_A Ring finger protein 141 96.3 0.00024 8.2E-09 47.6 -2.3 28 2-29 31-60 (70)
58 2l0b_A E3 ubiquitin-protein li 96.2 0.0007 2.4E-08 48.0 -0.4 27 2-28 60-88 (91)
59 1v87_A Deltex protein 2; ring- 96.2 0.00089 3.1E-08 49.1 0.1 28 2-29 60-94 (114)
60 2ecj_A Tripartite motif-contai 96.1 0.0011 3.9E-08 42.3 0.6 22 2-23 32-58 (58)
61 2ysj_A Tripartite motif-contai 95.6 0.0026 8.7E-08 41.5 0.6 22 2-23 37-63 (63)
62 4ap4_A E3 ubiquitin ligase RNF 95.6 0.0022 7.5E-08 47.8 0.1 28 2-29 31-60 (133)
63 2ecl_A Ring-box protein 2; RNF 95.6 0.0027 9.2E-08 43.9 0.6 28 2-29 47-76 (81)
64 2yu4_A E3 SUMO-protein ligase 95.3 0.0025 8.5E-08 45.4 -0.3 42 2-43 25-80 (94)
65 3htk_C E3 SUMO-protein ligase 93.9 0.0088 3E-07 50.7 -0.5 42 2-43 199-249 (267)
66 3hct_A TNF receptor-associated 92.6 0.031 1.1E-06 41.1 0.9 76 19-102 20-110 (118)
67 1rmd_A RAG1; V(D)J recombinati 92.4 0.073 2.5E-06 38.8 2.7 76 18-98 24-112 (116)
68 2d9k_A FLN29 gene product; zin 90.9 0.061 2.1E-06 36.2 0.8 40 61-103 3-43 (75)
69 2eod_A TNF receptor-associated 90.3 0.21 7.3E-06 31.9 3.0 52 45-101 11-63 (66)
70 2yt9_A Zinc finger-containing 90.2 0.61 2.1E-05 31.5 5.6 77 19-102 9-92 (95)
71 2gli_A Protein (five-finger GL 89.3 1.2 4.1E-05 33.0 7.1 54 45-100 68-124 (155)
72 2dlq_A GLI-kruppel family memb 88.8 0.67 2.3E-05 32.9 5.1 46 54-101 72-120 (124)
73 1wim_A KIAA0161 protein; ring 88.3 0.066 2.2E-06 37.7 -0.8 25 2-26 25-61 (94)
74 2j7j_A Transcription factor II 86.4 0.65 2.2E-05 30.5 3.5 76 19-99 3-85 (85)
75 2rpc_A Zinc finger protein ZIC 86.4 1.5 5E-05 32.6 5.9 79 19-100 64-147 (155)
76 1wjp_A Zinc finger protein 295 86.1 0.6 2E-05 32.6 3.4 76 19-101 18-95 (107)
77 1ubd_C Protein (YY1 zinc finge 84.9 0.97 3.3E-05 32.2 4.1 46 53-98 69-117 (124)
78 2gli_A Protein (five-finger GL 84.8 1.9 6.5E-05 31.8 5.9 81 19-102 5-96 (155)
79 2dmd_A Zinc finger protein 64, 84.3 1.7 5.7E-05 29.3 4.9 77 19-102 10-91 (96)
80 2ee8_A Protein ODD-skipped-rel 80.5 4.1 0.00014 27.9 5.9 76 19-101 19-99 (106)
81 2bay_A PRE-mRNA splicing facto 78.8 0.24 8.3E-06 32.1 -1.1 27 2-28 21-49 (61)
82 2dlk_A Novel protein; ZF-C2H2 78.5 2.6 9E-05 27.1 4.1 55 45-101 8-66 (79)
83 2kmk_A Zinc finger protein GFI 78.2 2.6 8.9E-05 27.2 4.0 73 19-98 3-80 (82)
84 2epa_A Krueppel-like factor 10 77.9 2.1 7.1E-05 27.3 3.4 50 45-96 18-70 (72)
85 1x3c_A Zinc finger protein 292 77.8 1.7 5.8E-05 29.3 2.9 29 73-101 26-55 (73)
86 2wbs_A Krueppel-like factor 4; 77.6 3.4 0.00012 27.2 4.5 24 74-97 35-59 (89)
87 2dmi_A Teashirt homolog 3; zin 76.8 1.9 6.4E-05 30.2 3.2 77 19-102 21-107 (115)
88 2dlq_A GLI-kruppel family memb 76.3 7.2 0.00025 27.2 6.3 77 19-102 9-93 (124)
89 1ubd_C Protein (YY1 zinc finge 75.7 4.5 0.00015 28.5 5.0 79 19-102 7-91 (124)
90 2eod_A TNF receptor-associated 72.5 1.5 5.3E-05 27.6 1.6 33 67-102 3-35 (66)
91 2drp_A Protein (tramtrack DNA- 71.7 4.2 0.00014 25.2 3.6 50 45-100 11-65 (66)
92 2eln_A Zinc finger protein 406 71.7 2.9 9.9E-05 24.0 2.5 25 73-97 8-33 (38)
93 3knv_A TNF receptor-associated 71.2 0.81 2.8E-05 34.7 -0.1 75 18-98 32-129 (141)
94 2ctd_A Zinc finger protein 512 69.3 6.9 0.00024 26.9 4.6 57 38-101 29-88 (96)
95 1sp2_A SP1F2; zinc finger, tra 69.1 5.5 0.00019 20.3 3.2 25 73-97 1-26 (31)
96 1zfd_A SWI5; DNA binding motif 68.4 7 0.00024 20.0 3.6 25 73-97 2-27 (32)
97 2d8s_A Cellular modulator of i 68.0 1.5 5.3E-05 29.8 0.8 25 4-28 41-69 (80)
98 2ebt_A Krueppel-like factor 5; 66.5 8.7 0.0003 25.7 4.6 75 19-98 17-98 (100)
99 1tf6_A Protein (transcription 65.7 7.9 0.00027 29.5 4.7 48 53-100 49-99 (190)
100 2ebt_A Krueppel-like factor 5; 65.2 13 0.00045 24.7 5.4 56 45-102 16-74 (100)
101 2jp9_A Wilms tumor 1; DNA bind 65.0 15 0.00052 25.2 5.8 79 19-102 8-93 (119)
102 2lt7_A Transcriptional regulat 63.5 4.6 0.00016 29.8 2.8 77 19-102 24-105 (133)
103 2ct1_A Transcriptional repress 63.4 7.9 0.00027 24.8 3.7 52 45-102 16-72 (77)
104 2csh_A Zinc finger protein 297 63.4 9.7 0.00033 26.1 4.4 75 19-101 12-91 (110)
105 2ehe_A Four and A half LIM dom 62.8 3.8 0.00013 27.3 2.0 26 3-28 1-26 (82)
106 1tf6_A Protein (transcription 62.5 11 0.00038 28.7 5.0 24 74-97 104-128 (190)
107 2cuq_A Four and A half LIM dom 62.5 4.6 0.00016 26.7 2.4 27 3-29 1-27 (80)
108 2rpc_A Zinc finger protein ZIC 59.7 12 0.00042 27.3 4.7 80 19-102 27-119 (155)
109 2jp9_A Wilms tumor 1; DNA bind 58.9 11 0.00037 26.0 4.0 74 19-97 38-118 (119)
110 2egq_A FHL1 protein; LIM domai 58.8 6.1 0.00021 25.8 2.5 26 4-29 2-27 (77)
111 1a1h_A QGSR zinc finger peptid 58.8 13 0.00044 24.2 4.2 75 19-100 6-87 (90)
112 1x5w_A Zinc finger protein 64, 57.2 13 0.00044 23.2 3.8 52 45-102 10-64 (70)
113 2i13_A AART; DNA binding, zinc 57.0 9 0.00031 29.2 3.6 77 19-102 79-160 (190)
114 2adr_A ADR1; transcription reg 56.8 12 0.00042 22.4 3.6 48 53-102 7-57 (60)
115 2i13_A AART; DNA binding, zinc 56.4 14 0.00047 28.1 4.6 78 19-103 51-133 (190)
116 3vhs_A ATPase wrnip1; zinc fin 53.2 6.9 0.00024 20.8 1.5 22 45-70 7-28 (29)
117 1x6e_A Zinc finger protein 24; 53.1 14 0.00048 23.2 3.5 52 45-102 15-69 (72)
118 2vy4_A U11/U12 small nuclear r 53.1 6 0.00021 22.9 1.4 24 45-71 6-29 (37)
119 1llm_C Chimera of ZIF23-GCN4; 52.1 0.66 2.3E-05 31.2 -3.4 76 19-101 5-84 (88)
120 1bhi_A CRE-BP1, ATF-2; CRE bin 51.1 9.5 0.00033 20.4 2.1 27 73-99 5-32 (38)
121 1bbo_A Human enhancer-binding 51.0 17 0.00058 21.3 3.5 46 53-100 6-54 (57)
122 2lv2_A Insulinoma-associated p 50.1 19 0.00064 24.3 3.9 51 45-101 29-82 (85)
123 1x3h_A Leupaxin; paxillin fami 48.9 8.4 0.00029 25.3 1.9 26 4-29 2-27 (80)
124 2d9h_A Zinc finger protein 692 48.2 12 0.0004 23.9 2.5 52 45-102 8-65 (78)
125 2ab3_A ZNF29; zinc finger prot 47.1 10 0.00035 18.5 1.7 24 74-97 2-26 (29)
126 1ncs_A Peptide M30F, transcrip 47.1 7.5 0.00026 22.5 1.3 26 72-97 16-42 (47)
127 1flk_A TNF receptor associated 47.1 5 0.00017 32.6 0.6 26 44-69 9-39 (228)
128 1zw8_A Zinc-responsive transcr 47.0 11 0.00037 24.2 2.1 53 45-99 2-64 (64)
129 1va1_A Transcription factor SP 46.3 13 0.00045 19.9 2.2 25 73-97 7-32 (37)
130 2m0e_A Zinc finger and BTB dom 45.7 22 0.00075 17.0 2.9 25 73-99 1-26 (29)
131 2cup_A Skeletal muscle LIM-pro 45.7 6.3 0.00022 27.2 0.9 26 3-28 52-77 (101)
132 2wbt_A B-129; zinc finger; 2.7 45.6 32 0.0011 24.1 4.8 54 41-102 72-127 (129)
133 1klr_A Zinc finger Y-chromosom 45.4 23 0.00079 17.1 3.0 25 74-100 2-27 (30)
134 1x63_A Skeletal muscle LIM-pro 43.9 11 0.00037 24.9 1.8 25 4-28 2-26 (82)
135 3uk3_C Zinc finger protein 217 43.7 16 0.00053 21.5 2.4 44 54-99 10-56 (57)
136 1paa_A Yeast transcription fac 42.0 23 0.0008 17.2 2.7 25 74-100 2-27 (30)
137 1x6a_A LIMK-2, LIM domain kina 41.1 14 0.00047 24.3 2.0 25 4-28 2-26 (81)
138 1ard_A Yeast transcription fac 40.9 29 0.00099 16.6 3.0 23 74-98 2-25 (29)
139 2dlo_A Thyroid receptor-intera 40.1 15 0.0005 24.2 2.0 25 3-28 2-26 (81)
140 1wjv_A Cell growth regulating 38.4 6.3 0.00022 26.9 -0.1 44 45-94 11-55 (79)
141 2ct7_A Ring finger protein 31; 37.1 12 0.00041 25.5 1.2 15 1-15 46-61 (86)
142 1rik_A E6APC1 peptide; E6-bind 36.8 23 0.0008 17.1 2.1 23 74-98 2-25 (29)
143 1x6h_A Transcriptional repress 36.7 43 0.0015 21.2 4.0 53 45-103 16-75 (86)
144 2gmg_A Hypothetical protein PF 36.2 20 0.00067 25.8 2.2 22 2-27 72-94 (105)
145 1p7a_A BF3, BKLF, kruppel-like 35.7 41 0.0014 17.4 3.2 24 73-98 10-34 (37)
146 1rim_A E6APC2 peptide; E6-bind 34.9 47 0.0016 16.9 3.3 25 73-99 1-26 (33)
147 2gqj_A Zinc finger protein KIA 34.0 9 0.00031 26.1 0.1 53 45-103 25-82 (98)
148 1znf_A 31ST zinc finger from X 33.1 35 0.0012 16.0 2.4 22 74-97 1-23 (27)
149 2kvf_A Zinc finger and BTB dom 32.4 24 0.00082 17.0 1.7 23 73-97 2-25 (28)
150 1f2i_G Fusion of N-terminal 17 30.5 32 0.0011 21.3 2.5 49 45-97 20-71 (73)
151 2jmo_A Parkin; IBR, E3 ligase, 30.4 21 0.00073 23.9 1.6 15 2-16 55-69 (80)
152 2xqn_T Testin, TESS; metal-bin 30.3 12 0.0004 27.0 0.2 25 4-28 50-74 (126)
153 2kvh_A Zinc finger and BTB dom 30.0 29 0.00099 16.5 1.7 23 73-97 2-25 (27)
154 1lpv_A Doublesex protein; tran 29.8 11 0.00036 23.7 -0.1 25 59-85 18-42 (52)
155 2jne_A Hypothetical protein YF 29.8 10 0.00034 27.0 -0.2 25 4-28 47-72 (101)
156 2elx_A Zinc finger protein 406 29.5 38 0.0013 17.2 2.3 25 73-99 6-31 (35)
157 2ct0_A Non-SMC element 1 homol 29.1 22 0.00074 23.7 1.4 27 2-28 33-63 (74)
158 3mjh_B Early endosome antigen 29.1 42 0.0014 18.9 2.4 26 75-102 6-32 (34)
159 2m0f_A Zinc finger and BTB dom 29.0 35 0.0012 16.2 2.0 23 74-98 2-25 (29)
160 2lce_A B-cell lymphoma 6 prote 28.7 64 0.0022 19.9 3.7 46 53-100 22-70 (74)
161 2ko5_A Ring finger protein Z; 28.7 8.1 0.00028 27.3 -0.9 26 3-28 45-72 (99)
162 2m0d_A Zinc finger and BTB dom 28.0 44 0.0015 15.9 2.3 23 73-97 2-25 (30)
163 2cot_A Zinc finger protein 435 28.0 64 0.0022 20.1 3.6 45 54-100 24-71 (77)
164 1srk_A Zinc finger protein ZFP 27.4 46 0.0016 16.9 2.4 25 73-99 6-31 (35)
165 2elo_A Zinc finger protein 406 26.6 39 0.0013 17.5 2.0 26 73-100 8-34 (37)
166 2yrt_A Chord containing protei 26.1 28 0.00094 23.4 1.5 28 42-74 8-35 (75)
167 2e72_A POGO transposable eleme 25.9 73 0.0025 19.5 3.2 29 73-103 11-40 (49)
168 2elt_A Zinc finger protein 406 25.9 46 0.0016 17.0 2.3 24 73-98 8-32 (36)
169 2apo_B Ribosome biogenesis pro 25.8 31 0.0011 22.1 1.6 22 6-28 7-29 (60)
170 2ent_A Krueppel-like factor 15 25.4 47 0.0016 18.4 2.3 25 73-97 11-36 (48)
171 2elr_A Zinc finger protein 406 25.4 64 0.0022 16.3 2.8 24 73-98 8-32 (36)
172 2a25_A Ubiquitin ligase SIAH1; 25.0 36 0.0012 26.8 2.2 46 23-69 16-61 (193)
173 2els_A Zinc finger protein 406 24.9 51 0.0018 16.9 2.3 24 73-98 8-32 (36)
174 1v6g_A Actin binding LIM prote 24.8 36 0.0012 22.2 1.9 24 5-28 3-26 (81)
175 2enf_A Zinc finger protein 347 24.3 52 0.0018 18.1 2.4 25 73-99 11-36 (46)
176 2eom_A ZFP-95, zinc finger pro 24.3 64 0.0022 17.8 2.8 26 73-100 11-37 (46)
177 2epx_A Zinc finger protein 28 24.2 66 0.0023 17.6 2.9 26 73-100 11-37 (47)
178 2elq_A Zinc finger protein 406 24.2 49 0.0017 17.0 2.1 23 73-97 8-31 (36)
179 2elm_A Zinc finger protein 406 24.0 43 0.0015 17.6 1.9 26 73-100 8-34 (37)
180 2jrp_A Putative cytoplasmic pr 24.0 19 0.00066 24.6 0.3 19 68-88 45-63 (81)
181 2eos_A B-cell lymphoma 6 prote 23.4 71 0.0024 17.0 2.8 25 73-99 10-35 (42)
182 2eq2_A Zinc finger protein 347 23.4 75 0.0026 17.4 3.0 25 73-99 11-36 (46)
183 2yte_A Zinc finger protein 473 23.2 84 0.0029 16.6 3.1 24 73-98 9-33 (42)
184 2xcm_E RAR1, cytosolic heat sh 22.7 17 0.00058 24.4 -0.1 28 42-74 8-35 (74)
185 2ej4_A Zinc finger protein ZIC 22.6 99 0.0034 19.9 3.9 24 75-100 63-87 (95)
186 2epz_A Zinc finger protein 28 22.6 85 0.0029 17.1 3.1 25 73-99 11-36 (46)
187 2eoh_A Zinc finger protein 28 22.6 87 0.003 17.1 3.2 25 73-99 11-36 (46)
188 2ep1_A Zinc finger protein 484 22.5 97 0.0033 16.8 3.4 25 73-99 11-36 (46)
189 2eq4_A Zinc finger protein 224 22.2 64 0.0022 17.6 2.5 25 73-99 11-36 (46)
190 2ytr_A Zinc finger protein 347 22.1 90 0.0031 16.9 3.2 25 73-99 11-36 (46)
191 2eov_A Zinc finger protein 484 22.1 87 0.003 17.0 3.1 25 73-99 11-36 (46)
192 2ytn_A Zinc finger protein 347 22.1 83 0.0028 17.2 3.0 25 73-99 11-36 (46)
193 2lvu_A Zinc finger and BTB dom 27.6 19 0.00065 17.1 0.0 22 74-97 2-24 (26)
194 2eq1_A Zinc finger protein 347 21.9 76 0.0026 17.3 2.8 25 73-99 11-36 (46)
195 2ely_A Zinc finger protein 224 21.8 93 0.0032 17.0 3.2 26 73-100 11-37 (46)
196 2kvg_A Zinc finger and BTB dom 21.7 31 0.001 16.6 0.8 23 73-97 2-25 (27)
197 2elz_A Zinc finger protein 224 21.7 87 0.003 17.1 3.0 25 73-99 11-36 (46)
198 2em0_A Zinc finger protein 224 21.6 95 0.0032 16.9 3.2 24 73-98 11-35 (46)
199 2yti_A Zinc finger protein 347 21.5 93 0.0032 16.9 3.1 25 73-99 11-36 (46)
200 2el5_A Zinc finger protein 268 21.4 70 0.0024 17.0 2.5 26 73-100 9-35 (42)
201 1vfy_A Phosphatidylinositol-3- 21.3 28 0.00096 22.8 0.8 13 2-14 32-44 (73)
202 2yth_A Zinc finger protein 224 21.3 81 0.0028 17.2 2.8 25 73-99 11-36 (46)
203 2eoq_A Zinc finger protein 224 21.2 1E+02 0.0036 16.7 3.3 25 73-99 11-36 (46)
204 2jx1_A Myelin transcription fa 21.1 43 0.0015 18.5 1.4 12 75-86 2-13 (31)
205 2eon_A ZFP-95, zinc finger pro 21.0 47 0.0016 18.4 1.7 24 73-98 11-35 (46)
206 2en9_A Zinc finger protein 28 20.8 80 0.0028 17.3 2.7 26 73-100 11-37 (46)
207 3dpl_R Ring-box protein 1; ubi 20.8 16 0.00053 26.1 -0.7 16 2-17 72-87 (106)
208 1z2q_A LM5-1; membrane protein 20.8 30 0.001 23.3 0.8 13 2-14 42-54 (84)
209 2ytm_A Zinc finger protein 28 20.6 67 0.0023 17.7 2.3 26 73-100 11-37 (46)
210 2yrm_A B-cell lymphoma 6 prote 20.5 1.1E+02 0.0038 16.4 3.3 26 73-100 9-35 (43)
211 2en7_A Zinc finger protein 268 20.5 97 0.0033 16.5 3.0 24 73-98 11-35 (44)
212 2elp_A Zinc finger protein 406 20.5 53 0.0018 17.0 1.8 23 73-97 8-32 (37)
213 2ytb_A Zinc finger protein 32; 20.4 65 0.0022 17.1 2.2 25 73-99 10-35 (42)
214 2jtn_A LIM domain-binding prot 20.3 31 0.0011 26.5 1.0 24 4-27 106-129 (182)
215 1iml_A CRIP, cysteine rich int 20.3 35 0.0012 22.0 1.1 21 4-24 47-68 (76)
216 2emg_A Zinc finger protein 484 20.3 94 0.0032 16.9 3.0 25 73-99 11-36 (46)
217 4gzn_C ZFP-57, zinc finger pro 20.3 79 0.0027 19.5 2.8 49 45-100 5-56 (60)
218 1z60_A TFIIH basal transcripti 20.2 36 0.0012 21.7 1.0 38 6-48 16-56 (59)
219 2lvt_A Zinc finger and BTB dom 25.4 22 0.00076 17.3 0.0 22 74-97 2-24 (29)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=1.9e-36 Score=249.74 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=104.0
Q ss_pred HHhhcceecCcCCCCCcceeeecCchhhHhhcCCCCCCCCCCCC--CCcccChhhHHHHHhhhcCCCceeEEecceEEEE
Q 038900 38 LLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSG--CDFLGSSSQLYQHFRAQHQNSSVPFRYDQDFSIR 115 (230)
Q Consensus 38 ~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~~--C~~~g~~~~L~~H~~~~H~~~~~~~~y~~~~~l~ 115 (230)
++++++ +||+|+.+||++.++|.++.+||+.|+|+|+.||.+| |+|+|+.++|.+|++.+|.|..+. .+..+ ++
T Consensus 1 v~~s~~-~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~--~g~~i-~f 76 (193)
T 2a25_A 1 VANSVL-FPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL--QGEDI-VF 76 (193)
T ss_dssp ------------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE--ESSEE-EE
T ss_pred CccceE-ecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee--cCceE-EE
Confidence 468899 9999999999999999999999999999999999987 999999999999999999985322 22222 22
Q ss_pred EecCC-----CCeEEEEEecCCeEEEEEEecCCCCce---eEEEEEeecCCC-CCCCeEEEEEEeCCceEEEEEeeccee
Q 038900 116 LDAKN-----DKFLVLLEGRDDNILFVLHNARSNQQQ---NGLSISCISSSR-EARNEYKISVTFGSNNVSTLTFRSAIS 186 (230)
Q Consensus 116 l~~~~-----~~~~vl~~~~d~~~lFll~~~~~~~~g---~~vsv~cigp~~-~~~f~Y~l~~~~~~~~l~~~s~~~~i~ 186 (230)
+..+. .+|++++.+++..|+|+++.+. .+.| .+++|+||||.+ +.+|+|+|++.+++++|+|++++++++
T Consensus 77 ~~~~~~l~~~~~~~~v~~~~g~~Fll~~~~~~-~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~ 155 (193)
T 2a25_A 77 LATDINLPGAVDWVMMQSCFGFHFMLVLEKQE-KYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIH 155 (193)
T ss_dssp EEECCC----CEEEEEEEETTEEEEEEEEEC-------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETT
T ss_pred EecccccccceeEEEEEEecCceEEEEEEEec-cCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehh
Confidence 22221 2687777766555556666654 3444 468999999864 468999999999999999999998776
Q ss_pred cccccccCCCCCCcccccCcc---cCCCCceEEEEEEEcc
Q 038900 187 SSKKQLDNLPKLGFPLVPWLL---DATDGRLNLKICIFKD 223 (230)
Q Consensus 187 ~s~~~~~~~~~~~fl~vp~~~---~~~~g~l~l~v~I~~~ 223 (230)
.+.. ...++.+||+||..+ |+++|+|.|+|+|+++
T Consensus 156 e~~~--~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~ 193 (193)
T 2a25_A 156 EGIA--TAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 193 (193)
T ss_dssp TCSH--HHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred hccc--ccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence 5321 224678899999754 6777899999999874
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.75 E-value=7e-19 Score=141.49 Aligned_cols=103 Identities=21% Similarity=0.415 Sum_probs=91.8
Q ss_pred CCCCCccccccccccC---CCCCCCCCCCCCc---cchHHHHHHHhhcceecCcCCCCCcceeeecCchhhHhhcCCCCC
Q 038900 1 CENGHMVCTTCRSKIK---NDSCPFDRSPIAY---TRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSP 74 (230)
Q Consensus 1 C~~GH~~C~~C~~~l~---~~~CP~C~~~~~~---~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~ 74 (230)
++|||+||..|+.++. ..+||.||.++.. .++.++++++.+++ |.|+|. ||++.+++.++++|+++|+|++
T Consensus 34 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~-v~C~n~--GC~~~~~~~~l~~H~~~C~~~~ 110 (170)
T 3hcs_A 34 TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM-VKCPNE--GCLHKMELRHLEDHQAHCEFAL 110 (170)
T ss_dssp CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE-EECCST--TCCCEEEGGGHHHHHTTCTTSE
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc-cCCCCC--CCCceecHhHHHHHHhcCCcee
Confidence 4799999999999852 2389999999875 47899999999999 999985 9999999999999999999999
Q ss_pred CCCCCCCCCcccChhhHHHHHhhhcCCCceeEEe
Q 038900 75 CSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRY 108 (230)
Q Consensus 75 ~~Cp~~~C~~~g~~~~L~~H~~~~H~~~~~~~~y 108 (230)
+.|| +|++.+.+++|..|+...+....+...|
T Consensus 111 v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~ 142 (170)
T 3hcs_A 111 MDCP--QCQRPFQKFHINIHILKDCPRRQVSCDN 142 (170)
T ss_dssp EECT--TTCCEEEGGGHHHHHHHTCTTCEEECTT
T ss_pred eECC--CCChHHHHHHHHHHhhhhCCCCCeECCC
Confidence 9998 8999999999999999888777655554
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.29 E-value=9.9e-13 Score=99.38 Aligned_cols=70 Identities=24% Similarity=0.490 Sum_probs=60.7
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc---cchHHHHHHHhhcceecCcCCCCCcceeeecCchhhHhhcCCCCC
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY---TRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSP 74 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~---~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~ 74 (230)
+|||+||..|+.++. ...||.||.++.. .++..+++++++++ |.|+| .||++.+.+.++++|+++|.+..
T Consensus 35 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~-v~C~n--~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 35 PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM-VKCPN--EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE-EECSS--TTCCCEEEGGGSGGGTSSSCC--
T ss_pred CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce-eECCC--CCCCCEEeeHHHHHHHHHchhhh
Confidence 699999999998852 2379999999874 37899999999999 99998 59999999999999999998764
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=3.3e-12 Score=96.05 Aligned_cols=69 Identities=26% Similarity=0.446 Sum_probs=60.7
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc----cchHHHHHHHhhcceecCcCCCCCcceeeecCchhhHhhcCCCC
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY----TRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHS 73 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~----~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~ 73 (230)
+|||.||..|+.++. +..||.||.++.. ..+..+++++++++ +.|+|. ||++.+.+.++.+|+++|.+.
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~-v~C~~~--gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM-VKCPAQ--DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE-EECCST--TCCCEEEHHHHHHHHHTSCCC
T ss_pred CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc-CCCCCC--CCcchhhHhHHHHHHHHhhcc
Confidence 689999999998852 3479999999863 24688999999999 999997 999999999999999999874
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.15 E-value=2e-12 Score=100.95 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=57.9
Q ss_pred CCCCccccccccccC--C-CCCCCCCCCCCc------------cchHHHHHHHhhcceecCcCCCCCcceeeecCchhh-
Q 038900 2 ENGHMVCTTCRSKIK--N-DSCPFDRSPIAY------------TRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKND- 65 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~-~~CP~C~~~~~~------------~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~- 65 (230)
+|||+||..|+.++. . ..||.||.++.. .++.+++++|.+++ |.|+| .||+|.+.+.++++
T Consensus 48 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~-v~Cpn--~GC~~~~~l~~l~~~ 124 (141)
T 3knv_A 48 QCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP-AVCPS--DGCTWKGTLKEYESC 124 (141)
T ss_dssp TTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE-EECCS--TTCCCEEEHHHHHHH
T ss_pred CCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc-cccCC--CCCCCEeEHHHHHHH
Confidence 699999999999952 1 379999987531 26889999999999 99999 59999999999998
Q ss_pred HhhcCC
Q 038900 66 HEKACK 71 (230)
Q Consensus 66 He~~C~ 71 (230)
|+..|+
T Consensus 125 H~~~~~ 130 (141)
T 3knv_A 125 HEGRCP 130 (141)
T ss_dssp TTTCCH
T ss_pred HHHHhH
Confidence 998885
No 6
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.5e-05 Score=57.77 Aligned_cols=71 Identities=23% Similarity=0.420 Sum_probs=36.3
Q ss_pred CCccccccccccCC-----------CCCC-CCCCCCCccchHHHHHHH--hhcceecCcCCCCCcceeeecCchhhHhhc
Q 038900 4 GHMVCTTCRSKIKN-----------DSCP-FDRSPIAYTRNRVIEKLL--ESVKSVSCKNAEYGCNEMLGYLEKNDHEKA 69 (230)
Q Consensus 4 GH~~C~~C~~~l~~-----------~~CP-~C~~~~~~~r~~~~e~~~--~~l~~v~C~n~~~GC~~~~~~~~~~~He~~ 69 (230)
-|.-|..|+..-=. -.|| .|.. ..-|+..-|.+. -... ++|+|+.|||+.++...++.+||+.
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP~~Cga--~i~rckL~EH~~~CP~a~-v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGA--VFHSCKADEHRLLCPFER-VPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECTTCCSC--EEEHHHHHHHHHHCSSSE-EECTTTTTTCCCEEESSTHHHHHHT
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCCcccCC--eeehhhHHHHHhhccccc-ccccccCcCCceeecHHHHHHHHhh
Confidence 38889999876210 0244 3432 222333333322 2334 5566666666666666666666666
Q ss_pred CCCCCCCC
Q 038900 70 CKHSPCSC 77 (230)
Q Consensus 70 C~~~~~~C 77 (230)
|+-+.+.|
T Consensus 90 CPas~v~~ 97 (100)
T 2yre_A 90 CPASVSGP 97 (100)
T ss_dssp CGGGCCCC
T ss_pred CCceeEec
Confidence 66555544
No 7
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=8.4e-06 Score=59.13 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=48.7
Q ss_pred hcceecCcCCCCCcceeeecCchhhHhhcCCCCCCCCCCC--CCCcccChhhHHHHHhh
Q 038900 41 SVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLS--GCDFLGSSSQLYQHFRA 97 (230)
Q Consensus 41 ~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~--~C~~~g~~~~L~~H~~~ 97 (230)
-.. ++||| .|...+...++++|.+.|+.+...|++. ||.+.+.+.+|.+|++.
T Consensus 35 C~~-i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 35 CDL-IGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp CCE-EECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eee-eeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 347 99997 8999999999999999999999999976 89999999999999985
No 8
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.79 E-value=1e-05 Score=55.70 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=46.4
Q ss_pred cceecCcCCCCCcceeeecCchhhHhh-cCCCCCCCCCCCCCCcccChhhHHHHHhhhcCC
Q 038900 42 VKSVSCKNAEYGCNEMLGYLEKNDHEK-ACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQN 101 (230)
Q Consensus 42 l~~v~C~n~~~GC~~~~~~~~~~~He~-~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~~H~~ 101 (230)
.. |.|+| ||...+...+++.|++ +|+++++.|++ |+....+.+|..|.. .+..
T Consensus 15 ~~-v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~-~Cp~ 68 (76)
T 2yuc_A 15 NV-IPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEG-MCPQ 68 (76)
T ss_dssp SC-CBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTT-SCTT
T ss_pred cc-cCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHh-HCCC
Confidence 45 88987 8999999999999998 99999999985 999999999999984 4443
No 9
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.67 E-value=1.5e-05 Score=56.58 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=35.3
Q ss_pred CCCcccccccccc----CCCCCCCCCCCCC----ccchHHHHHHHhhcceecCc
Q 038900 3 NGHMVCTTCRSKI----KNDSCPFDRSPIA----YTRNRVIEKLLESVKSVSCK 48 (230)
Q Consensus 3 ~GH~~C~~C~~~l----~~~~CP~C~~~~~----~~r~~~~e~~~~~l~~v~C~ 48 (230)
|||.||..|+.++ ....||.||.++. ...|..++++++.++ -.-.
T Consensus 32 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~-~~~~ 84 (92)
T 3ztg_A 32 CGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK-NETG 84 (92)
T ss_dssp TCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH-HHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH-HHHh
Confidence 8999999999885 2247999999873 346899999998877 4433
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.60 E-value=1.3e-05 Score=57.80 Aligned_cols=42 Identities=24% Similarity=0.547 Sum_probs=34.6
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++. +..||.||.++.. .+|..++++++.++
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 699999999998852 2479999998873 46889999988775
No 11
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.58 E-value=4.4e-05 Score=56.85 Aligned_cols=42 Identities=21% Similarity=0.495 Sum_probs=34.1
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIKNDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++....||.||.++.. .+|..+++++..+.
T Consensus 40 ~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp SSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 7999999999999644579999998853 35888888887655
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.45 E-value=3.9e-05 Score=57.64 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc----cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY----TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~----~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++. ...||.||.++.. .+|..++++++.+.
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 699999999998742 2379999999864 46889999887754
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.44 E-value=1.8e-05 Score=54.40 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCCcccccccccc-C--CCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKI-K--NDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-~--~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
+|||+||..|+.++ . +..||.|+.++.. .+|..++++++...
T Consensus 25 ~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 25 STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 68999999999884 2 3579999998863 46888888877654
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.44 E-value=2.8e-05 Score=54.12 Aligned_cols=29 Identities=34% Similarity=0.793 Sum_probs=24.0
Q ss_pred CCCCCccccccccccC---CCCCCCCCCCCCc
Q 038900 1 CENGHMVCTTCRSKIK---NDSCPFDRSPIAY 29 (230)
Q Consensus 1 C~~GH~~C~~C~~~l~---~~~CP~C~~~~~~ 29 (230)
|+|||.||..|+.++. +..||.||.++..
T Consensus 31 ~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 31 CTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp STTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5799999999998863 3579999998763
No 15
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.39 E-value=1.4e-05 Score=55.00 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=41.4
Q ss_pred cCchhhHhhcCCCCCCCCCCCCCCcccChhhHHHHHhhhcCCCceeEEe
Q 038900 60 YLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSSVPFRY 108 (230)
Q Consensus 60 ~~~~~~He~~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~~H~~~~~~~~y 108 (230)
..+++.|++.|+|+++.||. +|+....+++|.+|+........+...|
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~ 49 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEF 49 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSS
T ss_pred chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCC
Confidence 45788999999999999995 8999999999999999878777665555
No 16
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.34 E-value=6.5e-05 Score=58.64 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=34.3
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc----cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY----TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~----~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++. ...||.||.++.. .+|..++++++.+.
T Consensus 95 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 699999999998852 2379999999874 36899999988765
No 17
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.33 E-value=5.1e-05 Score=55.57 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=33.8
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc-------cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY-------TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~-------~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++. ...||.|+.++.. ..|..++++++.+.
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 33 ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred CCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 799999999998852 2579999998863 25788888888766
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.32 E-value=5.9e-05 Score=57.83 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=29.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCcc-ch----HHHHHHHhhc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAYT-RN----RVIEKLLESV 42 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~~-r~----~~~e~~~~~l 42 (230)
+|||.||..|+.++. +..||.||.++... .+ ..+++++..+
T Consensus 70 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNL 117 (138)
T ss_dssp TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHTTS
T ss_pred CCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHHHh
Confidence 699999999999853 25799999998642 33 4455555443
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.29 E-value=4.8e-05 Score=55.11 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=28.4
Q ss_pred CCCCccccccccccC--C-CCCCCCCCCCCc---cchHHHHHHHhh
Q 038900 2 ENGHMVCTTCRSKIK--N-DSCPFDRSPIAY---TRNRVIEKLLES 41 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~-~~CP~C~~~~~~---~r~~~~e~~~~~ 41 (230)
+|||.||..|+.++. . ..||.||.++.. .+++.++++++.
T Consensus 40 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 40 HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQ 85 (100)
T ss_dssp TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHH
Confidence 589999999999851 2 479999999863 245555444443
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.23 E-value=7.1e-05 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.687 Sum_probs=22.8
Q ss_pred CCCCcccccccccc---CCCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI---KNDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l---~~~~CP~C~~~~~ 28 (230)
+|||+||..|+.++ ....||.||.++.
T Consensus 25 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 25 VCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 58999999999986 2247999999886
No 21
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.22 E-value=0.00016 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.3
Q ss_pred CCCCccccccccccCCCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
++||.||..|+.+... .||.||.++.
T Consensus 23 ~CgH~fC~~Ci~~~~~-~CP~Cr~~~~ 48 (56)
T 1bor_A 23 PCLHTLCSGCLEASGM-QCPICQAPWP 48 (56)
T ss_dssp TTSCCSBTTTCSSSSS-SCSSCCSSSS
T ss_pred CCCCcccHHHHccCCC-CCCcCCcEee
Confidence 5899999999988543 7999999875
No 22
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.22 E-value=0.00011 Score=57.97 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=35.2
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc----cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY----TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~----~r~~~~e~~~~~l~ 43 (230)
+|||.||..|+.++. +..||.||.++.. ..|..+++++..+.
T Consensus 72 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 72 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred CCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 799999999999852 3479999998853 35889999999888
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.20 E-value=2.7e-05 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.670 Sum_probs=23.0
Q ss_pred CCCCccccccccccC---------CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK---------NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---------~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. ...||.||.++..
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 699999999999742 2479999998863
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00012 Score=50.72 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc--cchHHHHHHHhhc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY--TRNRVIEKLLESV 42 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~--~r~~~~e~~~~~l 42 (230)
+|||.||..|+.++. ...||.||.++.. ..+..+.+.+.+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~~~ 76 (81)
T 2csy_A 32 KCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQKS 76 (81)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHSSS
T ss_pred cCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHHhh
Confidence 689999999998852 2479999998863 3465555555443
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=4.8e-05 Score=52.68 Aligned_cols=27 Identities=33% Similarity=0.705 Sum_probs=22.6
Q ss_pred CCCCcccccccccc--C------CCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI--K------NDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~------~~~CP~C~~~~~ 28 (230)
+|||.||..|+.++ . ...||.||.++.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 68999999999884 1 357999999886
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00017 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.738 Sum_probs=22.7
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~ 28 (230)
+|||.||..|+.++. +..||.||.++.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 589999999999852 347999999875
No 27
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.91 E-value=7.9e-05 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=22.4
Q ss_pred CCCCccccccccccC-C----CCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIK-N----DSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~-~----~~CP~C~~~~~ 28 (230)
+|||.||..|+.++. . ..||.||.++.
T Consensus 38 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 699999999998852 1 37999999886
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.89 E-value=0.00016 Score=48.42 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=23.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||.++..
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 689999999998852 3489999998763
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.87 E-value=0.00039 Score=51.27 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc----------cchHHHHHHHhhc
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY----------TRNRVIEKLLESV 42 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~----------~r~~~~e~~~~~l 42 (230)
+|||.||..|+.++. ...||.||.++.. ..|..+.+++...
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp TTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 689999999999863 2479999998753 1356666666554
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.86 E-value=0.00016 Score=47.32 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=23.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||.++..
T Consensus 27 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 589999999999852 3479999998763
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.85 E-value=0.00035 Score=44.36 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.8
Q ss_pred CCCccccccccccC--CCCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIK--NDSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~--~~~CP~C~~~~~ 28 (230)
+||.||..|+.++. +..||.||.++.
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 89999999999853 358999998763
No 32
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.00019 Score=48.57 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. ...||.||.++..
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 33 ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp SSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 699999999998852 3479999998863
No 33
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00025 Score=46.99 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=23.1
Q ss_pred CCCCccccccccccC---CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK---NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~---~~~CP~C~~~~~~ 29 (230)
+|||+||..|+.++. +..||.||.++..
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 32 ECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 689999999999852 2579999998763
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.81 E-value=6.1e-05 Score=52.15 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=26.6
Q ss_pred CCCCcccccccccc--C------CCCCCCCCCCCCc---cchHHHHHH
Q 038900 2 ENGHMVCTTCRSKI--K------NDSCPFDRSPIAY---TRNRVIEKL 38 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~------~~~CP~C~~~~~~---~r~~~~e~~ 38 (230)
+|||.||..|+.++ . ...||.||.++.. .+|..++++
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 36 DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 68999999999874 1 3479999998863 245444443
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00029 Score=47.43 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=23.1
Q ss_pred CCCCccccccccccC-----CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK-----NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~-----~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. ...||.||.++..
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 689999999999853 2479999998763
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00023 Score=47.95 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~ 28 (230)
+|||.||..|+.++. +..||.||.++.
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp TTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 689999999999853 257999999875
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.79 E-value=0.00031 Score=49.39 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
++||.||.+|+.++ .+..||.|+.++.. .+|.+++++|+...
T Consensus 31 ~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 31 PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 58999999999985 24589999999863 46888988887654
No 38
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.78 E-value=0.00027 Score=46.97 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=23.1
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||.++..
T Consensus 23 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 23 PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 589999999998852 3589999998863
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.75 E-value=0.00039 Score=47.51 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.2
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++ .+..||.||.++..
T Consensus 35 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 68999999999985 23579999998863
No 40
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.73 E-value=0.00041 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.823 Sum_probs=23.0
Q ss_pred CCCCc-cccccccccCCCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
+|||. ||..|..++. .||.||.++..
T Consensus 41 pCgH~~~C~~C~~~~~--~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAVD--KCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTCS--BCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcCc--cCCCcCcCccC
Confidence 68999 9999999984 69999998863
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.70 E-value=0.00026 Score=44.94 Aligned_cols=27 Identities=26% Similarity=0.615 Sum_probs=22.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~ 28 (230)
++||.||..|+.++. ...||.||.++.
T Consensus 26 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 589999999999852 257999998764
No 42
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.0004 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.823 Sum_probs=22.6
Q ss_pred CCCCc-cccccccccCCCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
+|||. ||..|..++. +||.||.++..
T Consensus 42 pCgH~~~C~~C~~~~~--~CP~Cr~~i~~ 68 (75)
T 2ecg_A 42 PCGHLVTCKQCAEAVD--KCPMCYTVITF 68 (75)
T ss_dssp SSCCCCBCHHHHHHCS--BCTTTCCBCCC
T ss_pred cCCCHHHHHHHhhCCC--CCccCCceecC
Confidence 68999 9999998775 69999998864
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.00039 Score=47.29 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++ .+..||.||.++..
T Consensus 43 ~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 43 PCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp TTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 58999999999985 23589999998763
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.59 E-value=0.00032 Score=46.78 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||.++..
T Consensus 34 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 34 PCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 589999999999852 3479999998753
No 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.58 E-value=0.0014 Score=51.71 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=45.2
Q ss_pred hcceecCcCCCCCcceeeecCchhhHh-hcCCCCCCCCCCCCCCcccChhhHHHHHhh
Q 038900 41 SVKSVSCKNAEYGCNEMLGYLEKNDHE-KACKHSPCSCPLSGCDFLGSSSQLYQHFRA 97 (230)
Q Consensus 41 ~l~~v~C~n~~~GC~~~~~~~~~~~He-~~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~ 97 (230)
-.. ++|+ ||++.+...++..|+ ..|++++..|| .|+......+|..|...
T Consensus 108 ~~~-v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~--~C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 108 FAL-MDCP----QCQRPFQKFHINIHILKDCPRRQVSCD--NCAASMAFEDKEIHDQN 158 (170)
T ss_dssp TSE-EECT----TTCCEEEGGGHHHHHHHTCTTCEEECT--TTCCEEEGGGHHHHHTT
T ss_pred cee-eECC----CCChHHHHHHHHHHhhhhCCCCCeECC--CCCCccCHHHHHhHHHh
Confidence 345 8897 999999999999999 59999999998 69999999999999865
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.57 E-value=0.00065 Score=49.30 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
++||.||..|+.++ .+..||.|+.++.. .+|..++++|+...
T Consensus 46 ~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 46 PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 58999999999984 24689999999863 47899999887664
No 47
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.00081 Score=45.22 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=22.8
Q ss_pred CCCCc-cccccccccCCCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
+|||. +|..|...+. +||.||.++..
T Consensus 32 pCgH~~~C~~C~~~~~--~CP~CR~~i~~ 58 (68)
T 2ea5_A 32 PCRHTCLCDGCVKYFQ--QCPMCRQFVQE 58 (68)
T ss_dssp TTTBCCSCTTHHHHCS--SCTTTCCCCCC
T ss_pred CCCChhhhHHHHhcCC--CCCCCCcchhc
Confidence 79999 9999999775 69999998864
No 48
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.49 E-value=0.00026 Score=48.36 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=41.4
Q ss_pred ecCcCCCCCcceeeecCchhhHhhcCCCCCCCCCCCCCCcccChhhHHHHHhh
Q 038900 45 VSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSGCDFLGSSSQLYQHFRA 97 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~ 97 (230)
+.|+ .|...+...++..|+..|+.+|+.|+ .|+....+.+|..|...
T Consensus 18 ~~C~----~C~~~~~~~~L~~H~~~c~~~~~~C~--~C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 18 AVCQ----HCDLELSILKLKEHEDYCGARTELCG--NCGRNVLVKDLKTHPEV 64 (75)
T ss_dssp EECS----SSCCEECHHHHHHHHHHHHHCEEECS--SSCCEEETTGGGTHHHH
T ss_pred cCCc----ccChHhhHHHHHHHHhHcCCCceEcc--cCCCcCcHHHHHHHHHH
Confidence 6676 48899999999999999999999998 49988888999999875
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.47 E-value=0.00038 Score=46.08 Aligned_cols=28 Identities=32% Similarity=0.833 Sum_probs=23.3
Q ss_pred CCCCc-cccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
++||. +|..|..++. +.+||.||.++..
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 78998 9999999864 2479999998853
No 50
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.45 E-value=0.00078 Score=46.65 Aligned_cols=26 Identities=35% Similarity=0.839 Sum_probs=23.1
Q ss_pred CCCCc-cccccccccCCCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
+|||. +|..|..++. .||.||.++..
T Consensus 35 pCgH~~~C~~C~~~~~--~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQLQ--SCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTCS--BCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhcC--cCCCCCchhhC
Confidence 69999 9999999886 69999998863
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.00047 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||.++..
T Consensus 35 ~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 35 PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 689999999999852 3479999998764
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.42 E-value=0.00054 Score=45.45 Aligned_cols=28 Identities=46% Similarity=1.023 Sum_probs=23.3
Q ss_pred CCCCc-cccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHM-VCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~-~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
++||. +|..|..++. +.+||.||.++..
T Consensus 27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp TEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 78999 8999999863 3579999998863
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.33 E-value=0.00059 Score=46.34 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCCccccccccccC--C--CCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIK--N--DSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~--~--~~CP~C~~~~~ 28 (230)
|||.||..|+.++. . ..||.||.++.
T Consensus 34 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 34 CGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 89999999998852 1 47999999753
No 54
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.32 E-value=0.0021 Score=46.46 Aligned_cols=67 Identities=21% Similarity=0.386 Sum_probs=45.3
Q ss_pred CCCCcccccccccc---CCCCCCCCCCCCCccchHHHHHHHhhcceecCcCCCCCcceeeecCchhhHhhcCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI---KNDSCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCP 78 (230)
Q Consensus 2 ~~GH~~C~~C~~~l---~~~~CP~C~~~~~~~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp 78 (230)
||.|+||.+|...+ ....||.|+.++..+....+ +++ +-|+.
T Consensus 19 PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~----~~i--f~C~~----------------------------- 63 (101)
T 3vk6_A 19 PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR----GSL--FMCSI----------------------------- 63 (101)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG----GGC--CCCCC-----------------------------
T ss_pred cccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc----CCE--EECCC-----------------------------
Confidence 68999999999764 22479999999875433211 222 34442
Q ss_pred CCCCCccc-ChhhHHHHHhhhcCCCc
Q 038900 79 LSGCDFLG-SSSQLYQHFRAQHQNSS 103 (230)
Q Consensus 79 ~~~C~~~g-~~~~L~~H~~~~H~~~~ 103 (230)
.++|.-.. +..+|..|....|....
T Consensus 64 ~~~CkrtyLs~rdlqaHI~~~H~~~~ 89 (101)
T 3vk6_A 64 VQGCKRTYLSQRDLQAHINHRHMRAG 89 (101)
T ss_dssp CCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence 35675544 67899999988887643
No 55
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.00065 Score=47.28 Aligned_cols=28 Identities=29% Similarity=0.643 Sum_probs=22.7
Q ss_pred CCCCccccccccccC-----CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK-----NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~-----~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. ...||.||.++..
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 689999999999852 1479999998753
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.29 E-value=0.0013 Score=47.49 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCC-Ccccccccccc-C-CCCCCCCCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENG-HMVCTTCRSKI-K-NDSCPFDRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~G-H~~C~~C~~~l-~-~~~CP~C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
++| |.||..|+.++ . +..||.|+.++.. .+|..++++|+...
T Consensus 39 ~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 39 PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 578 99999999984 2 3589999999863 47899999988765
No 57
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.00024 Score=47.58 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. ...||.||.++..
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 31 PCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp TTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 689999999999863 3579999988763
No 58
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.17 E-value=0.0007 Score=47.97 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~ 28 (230)
+|||.||..|+.++ .+..||.||.++.
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 60 PCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp TTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 68999999999985 2358999998764
No 59
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.15 E-value=0.00089 Score=49.13 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=22.8
Q ss_pred CCCCccccccccccC-------CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK-------NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~-------~~~CP~C~~~~~~ 29 (230)
+|||.||..|+.++. +..||.||..+..
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 599999999998842 2479999998763
No 60
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0011 Score=42.27 Aligned_cols=22 Identities=32% Similarity=0.800 Sum_probs=18.1
Q ss_pred CCCCcccccccccc-----CCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI-----KNDSCPFD 23 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-----~~~~CP~C 23 (230)
++||+||..|+.++ .+..||.|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 68999999999886 22579987
No 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.64 E-value=0.0026 Score=41.50 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=18.0
Q ss_pred CCCCccccccccccC-----CCCCCCC
Q 038900 2 ENGHMVCTTCRSKIK-----NDSCPFD 23 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~-----~~~CP~C 23 (230)
+|||+||..|+.++. ..+||.|
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 689999999998852 2479988
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.58 E-value=0.0022 Score=47.78 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=23.2
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~~ 29 (230)
++||+||..|+.++ .+..||.||.++..
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp TTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 58999999999985 23479999998863
No 63
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.57 E-value=0.0027 Score=43.93 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCccccccccccC--CCCCCCCCCCCCc
Q 038900 2 ENGHMVCTTCRSKIK--NDSCPFDRSPIAY 29 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~--~~~CP~C~~~~~~ 29 (230)
+|||.|+..|+.++. +..||.||.++..
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 489999999999852 3579999998753
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.33 E-value=0.0025 Score=45.44 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCCCcccccccccc-C-------CCCCCC--CCCC-CC---ccchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKI-K-------NDSCPF--DRSP-IA---YTRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-~-------~~~CP~--C~~~-~~---~~r~~~~e~~~~~l~ 43 (230)
.|||+||..|+.++ . ..+||. |+.. +. ..+|.+|+++|+..+
T Consensus 25 ~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 25 VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 38999999999884 1 137999 8865 54 247999999988765
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.0088 Score=50.69 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.0
Q ss_pred CCCCcccccccccc-CC---CCCCC--CCCCCCc---cchHHHHHHHhhcc
Q 038900 2 ENGHMVCTTCRSKI-KN---DSCPF--DRSPIAY---TRNRVIEKLLESVK 43 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-~~---~~CP~--C~~~~~~---~r~~~~e~~~~~l~ 43 (230)
.|||.||..|+.++ .. ..||. |+..+.. ..|..|.++++..+
T Consensus 199 ~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 199 KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 58999999999984 22 36999 9998753 46889988887655
No 66
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=92.61 E-value=0.031 Score=41.12 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCCCCCCCCcc---c------hHHHHHHHhhcceecCcCCCCCcceeeecCch------hhHhhcCCCCCCCCCCCCCC
Q 038900 19 SCPFDRSPIAYT---R------NRVIEKLLESVKSVSCKNAEYGCNEMLGYLEK------NDHEKACKHSPCSCPLSGCD 83 (230)
Q Consensus 19 ~CP~C~~~~~~~---r------~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~------~~He~~C~~~~~~Cp~~~C~ 83 (230)
.||.|...+... . -..+++.+..-. ..|| -|...+...++ ..-.. -..+.||+.||+
T Consensus 20 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP----~Cr~~~~~~~~~~~~~l~~~i~---~l~v~C~n~gC~ 91 (118)
T 3hct_A 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCP----VDNEILLENQLFPDNFAKREIL---SLMVKCPNEGCL 91 (118)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCT----TTCCBCCGGGCEECHHHHHHHH---TSEEECSSTTCC
T ss_pred CCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-CCCC----CCCCCcCHHhcccCHHHHHHHc---cceeECCCCCCC
Confidence 699998766531 1 246777777666 6898 47776665432 12222 256788888999
Q ss_pred cccChhhHHHHHhhhcCCC
Q 038900 84 FLGSSSQLYQHFRAQHQNS 102 (230)
Q Consensus 84 ~~g~~~~L~~H~~~~H~~~ 102 (230)
|.+...+|.+|+.+.+...
T Consensus 92 ~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 92 HKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp CEEEGGGSGGGTSSSCC--
T ss_pred CEEeeHHHHHHHHHchhhh
Confidence 9999999999998877553
No 67
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=92.43 E-value=0.073 Score=38.81 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCcc---c------hHHHHHHHhhcceecCcCCCCCcceeeecCchh----hHhhcCCCCCCCCCCCCCCc
Q 038900 18 DSCPFDRSPIAYT---R------NRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKN----DHEKACKHSPCSCPLSGCDF 84 (230)
Q Consensus 18 ~~CP~C~~~~~~~---r------~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~----~He~~C~~~~~~Cp~~~C~~ 84 (230)
..||.|...+... . -..+++.+.... ..|| -|...+...++. .-++.=.-..+.||..||+|
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP----~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~ 98 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMG-SYCP----SCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNE 98 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-SBCT----TTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc-CcCC----CCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 3699998876531 1 246777777667 7898 477776654432 11111222346788789999
Q ss_pred ccChhhHHHHHhhh
Q 038900 85 LGSSSQLYQHFRAQ 98 (230)
Q Consensus 85 ~g~~~~L~~H~~~~ 98 (230)
.+...++..|+...
T Consensus 99 ~~~~~~~~~H~~~C 112 (116)
T 1rmd_A 99 EVSLEKYNHHVSSH 112 (116)
T ss_dssp EEEHHHHHHHHHTS
T ss_pred hhhHhHHHHHHHHh
Confidence 99999999999763
No 68
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.94 E-value=0.061 Score=36.17 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=32.9
Q ss_pred CchhhHhh-cCCCCCCCCCCCCCCcccChhhHHHHHhhhcCCCc
Q 038900 61 LEKNDHEK-ACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNSS 103 (230)
Q Consensus 61 ~~~~~He~-~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~~H~~~~ 103 (230)
.++..|++ .|+++|+.|+ .|+......+|..|. .......
T Consensus 3 ~~L~~H~~~~c~~r~~~C~--~C~~~~~~~~L~~H~-~~c~~~~ 43 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQ--HCDLELSILKLKEHE-DYCGART 43 (75)
T ss_dssp CCCSCCCCCCCCCCCEECS--SSCCEECHHHHHHHH-HHHHHCE
T ss_pred hHHHhhCcccCCCcccCCc--ccChHhhHHHHHHHH-hHcCCCc
Confidence 46789997 8999999998 599999999999998 5444433
No 69
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.31 E-value=0.21 Score=31.93 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=37.3
Q ss_pred ecCcCCCCCcceeeecCchhhHhhcCCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 45 VSCKNAEYGCNEMLGYLEKNDHEKACKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
+.|+ -|...+....+..|++.+.-+|+.|+. .|+... ...+|..|++.....
T Consensus 11 ~~C~----~C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~~ 63 (66)
T 2eod_A 11 QPCT----YCTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCNT 63 (66)
T ss_dssp EECS----SSCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSSS
T ss_pred eecc----ccCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhccc
Confidence 5565 477777777788898888888889972 587764 456899998764443
No 70
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=90.21 E-value=0.61 Score=31.54 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCCCCCCCCccchHHHHHHH--hhcceecCcCCCCCcceeeec-CchhhHhhcCCC---CCCCCCCCCCCccc-ChhhH
Q 038900 19 SCPFDRSPIAYTRNRVIEKLL--ESVKSVSCKNAEYGCNEMLGY-LEKNDHEKACKH---SPCSCPLSGCDFLG-SSSQL 91 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~--~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~C~~---~~~~Cp~~~C~~~g-~~~~L 91 (230)
.|+.|...+............ ..-. +.|+ -|...+.. ..+..|++.-.- .++.|+ .|+... ....|
T Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~--~C~~~f~~~~~L 81 (95)
T 2yt9_A 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCP----VCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPDHL 81 (95)
T ss_dssp ECSSSCCEESSSHHHHHHHHHSCSSCS-EECS----SSCCEESCHHHHHHHHHHHCCCCCSSBCCS--SSCCCBSSHHHH
T ss_pred ECCCCCCccCChHHHHHHHHhcCCCCC-CcCC----CCCCccCCHHHHHHHHHHhcCCCCCceECC--CccchhCCHHHH
Confidence 599998776544433322222 2345 7787 48876655 467889875433 689998 588876 56899
Q ss_pred HHHHhhhcCCC
Q 038900 92 YQHFRAQHQNS 102 (230)
Q Consensus 92 ~~H~~~~H~~~ 102 (230)
..|++..|..+
T Consensus 82 ~~H~~~~H~~~ 92 (95)
T 2yt9_A 82 NGHIKQVHSGP 92 (95)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHhcCCC
Confidence 99999888764
No 71
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.35 E-value=1.2 Score=32.96 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=26.5
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhcC-CCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+.|+.. +|...+... .+..|++.- .-.++.|+.++|+... ...+|..|+...|.
T Consensus 68 ~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~ 124 (155)
T 2gli_A 68 HKCTFE--GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124 (155)
T ss_dssp CCCCST--TCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred ccCCCC--CCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence 555431 455544332 455565532 2345566654565554 34566666644443
No 72
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.80 E-value=0.67 Score=32.87 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred cceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 54 CNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 54 C~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
|...+... .+..|++. -.-.|+.|+ .|+... ....|..|+...|..
T Consensus 72 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 72 CQETFRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SCCEESSHHHHHHHHHHHSSSCSEECS--SSCCEESSHHHHHHHHHHTSSC
T ss_pred CCCccCCHHHHHHHHHHcCCCCCccCC--CccchhCCHHHHHHHHHHHCCC
Confidence 44443322 34445442 223445554 355444 334555555555543
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.27 E-value=0.066 Score=37.65 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.6
Q ss_pred CCCCcccccccccc-C---------CCCCCC--CCCC
Q 038900 2 ENGHMVCTTCRSKI-K---------NDSCPF--DRSP 26 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-~---------~~~CP~--C~~~ 26 (230)
+|||.||..|+... . ..+||. |+..
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 49999999998773 1 136999 9987
No 74
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=86.43 E-value=0.65 Score=30.50 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=45.5
Q ss_pred CC--CCCCCCCCccchHH--HHHHHhhcceecCcCCCCCcceeeecC-chhhHhhcCCCCCCCCCCCC-CCccc-ChhhH
Q 038900 19 SC--PFDRSPIAYTRNRV--IEKLLESVKSVSCKNAEYGCNEMLGYL-EKNDHEKACKHSPCSCPLSG-CDFLG-SSSQL 91 (230)
Q Consensus 19 ~C--P~C~~~~~~~r~~~--~e~~~~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~C~~~~~~Cp~~~-C~~~g-~~~~L 91 (230)
.| +.|...+....... +..-...-. +.|+. .||...+... .+..|++.-.- +.|+.++ |+... ....|
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l 77 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLY 77 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHH
Confidence 47 77876655433322 222233455 78874 3788766543 56677753221 7787554 88876 45788
Q ss_pred HHHHhhhc
Q 038900 92 YQHFRAQH 99 (230)
Q Consensus 92 ~~H~~~~H 99 (230)
..|++..|
T Consensus 78 ~~H~~~hh 85 (85)
T 2j7j_A 78 LKHVAECH 85 (85)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 88887654
No 75
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=86.43 E-value=1.5 Score=32.60 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=42.4
Q ss_pred CCCCCCCCCCccchHHH--HHHHhhcceecCcCCCCCcceeeec-CchhhHhhcC-CCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVI--EKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~--e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+........ ..-...-. +.|+.. +|...+.. ..+..|++.- .-.++.|+.++|+... ....|..
T Consensus 64 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~ 140 (155)
T 2rpc_A 64 ECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFP--GCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140 (155)
T ss_dssp TCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCT--TTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHH
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcC--CCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHH
Confidence 47777666543322221 11122334 667642 67665543 3566777632 2346777765677665 3467777
Q ss_pred HHhhhcC
Q 038900 94 HFRAQHQ 100 (230)
Q Consensus 94 H~~~~H~ 100 (230)
|++..+.
T Consensus 141 H~~~H~~ 147 (155)
T 2rpc_A 141 HMHVHTS 147 (155)
T ss_dssp SSTTTTS
T ss_pred HHHHhcC
Confidence 7765443
No 76
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.11 E-value=0.6 Score=32.61 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCCCCCCCCCccchHHHHHHHhhcceecCcCCCCCcceeeec-CchhhHhhcCCCCCCCCCCCCCCccc-ChhhHHHHHh
Q 038900 19 SCPFDRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKACKHSPCSCPLSGCDFLG-SSSQLYQHFR 96 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~C~~~~~~Cp~~~C~~~g-~~~~L~~H~~ 96 (230)
.|+.|...+...........+-.-. +.|+ -|...+.. ..+..|+.--.-.|+.|+ .|+... ....|..|+.
T Consensus 18 ~C~~C~~~f~~~~~l~~H~~~H~~~-~~C~----~C~~~f~~~~~l~~H~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~ 90 (107)
T 1wjp_A 18 QCRLCNAKLSSLLEQGSHERLCRNA-AVCP----YCSLRFFSPELKQEHESKCEYKKLTCL--ECMRTFKSSFSIWRHQV 90 (107)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHHHHS-BCCT----TTCCCBSSHHHHHHHHHHCSTGGGEEG--GGTEECSSHHHHHHHHH
T ss_pred ECCCCCCccCCHHHHHHHHHHCCCC-ccCC----CCCCccCCHHHHHHHHHcCCCCCccCc--cccchhCCHHHHHHHHH
Confidence 6999988776544433322222346 7887 47776554 456788864555678998 588876 5689999998
Q ss_pred hhcCC
Q 038900 97 AQHQN 101 (230)
Q Consensus 97 ~~H~~ 101 (230)
..|..
T Consensus 91 ~~H~~ 95 (107)
T 1wjp_A 91 EVHNQ 95 (107)
T ss_dssp HTSCC
T ss_pred HHcCC
Confidence 77865
No 77
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=84.89 E-value=0.97 Score=32.17 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=22.2
Q ss_pred Ccceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 53 GCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 53 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
+|...+.. ..+..|++. -.-.++.||...|+... ....|..|+...
T Consensus 69 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H 117 (124)
T 1ubd_C 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117 (124)
T ss_dssp TCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHH
Confidence 45554433 234455542 22345566544565544 345666665543
No 78
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.83 E-value=1.9 Score=31.80 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=50.8
Q ss_pred CCCCCCCCCCccchHHHHHH-----HhhcceecCcCCCCCcc---e-eeecCchhhHhhc-CCCCCCCCCCCCCCccc-C
Q 038900 19 SCPFDRSPIAYTRNRVIEKL-----LESVKSVSCKNAEYGCN---E-MLGYLEKNDHEKA-CKHSPCSCPLSGCDFLG-S 87 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~-----~~~l~~v~C~n~~~GC~---~-~~~~~~~~~He~~-C~~~~~~Cp~~~C~~~g-~ 87 (230)
.|+.|...+.....+..... ...-. +.|+.- ||. . ......+..|++. -.-.|+.|+.++|+... .
T Consensus 5 ~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~-~~C~~c--~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 81 (155)
T 2gli_A 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWG--GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR 81 (155)
T ss_dssp CBTTCCCBCSCHHHHHHHHHHHTSSSCSSC-CCCCBT--TCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred CcCCCccccCCHHHHHHHHHhhccCCCCcc-eeCCCC--CccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence 58899877654443332222 11234 677643 663 3 3344567788763 34478999877898876 5
Q ss_pred hhhHHHHHhhhcCCC
Q 038900 88 SSQLYQHFRAQHQNS 102 (230)
Q Consensus 88 ~~~L~~H~~~~H~~~ 102 (230)
...|..|+...+...
T Consensus 82 ~~~l~~H~~~h~~~~ 96 (155)
T 2gli_A 82 LENLKTHLRSHTGEK 96 (155)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 689999998755443
No 79
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.28 E-value=1.7 Score=29.32 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=49.9
Q ss_pred CCCCCCCCCCccchHHHHHHH--hhcceecCcCCCCCcceeeec-CchhhHhhcC-CCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVIEKLL--ESVKSVSCKNAEYGCNEMLGY-LEKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~--~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+............ ..-. +.|+ -|...+.. ..+..|++.- .-.++.|+ .|+... ...+|..
T Consensus 10 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~ 82 (96)
T 2dmd_A 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCK----TCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTV 82 (96)
T ss_dssp CBTTTTBCCCCHHHHHHHGGGCCCCCS-EECS----SSCCEESSHHHHHHHHHHSCCCCCEECS--SSSCEESSHHHHHH
T ss_pred ECCCCCCccCCHHHHHHHHHhcCCCCC-EeCC----CCCCccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHH
Confidence 699998876543332222111 1234 6787 58776654 4678898753 34678998 488876 5689999
Q ss_pred HHhhhcCCC
Q 038900 94 HFRAQHQNS 102 (230)
Q Consensus 94 H~~~~H~~~ 102 (230)
|++..|...
T Consensus 83 H~~~h~~~~ 91 (96)
T 2dmd_A 83 HLRSHTGDS 91 (96)
T ss_dssp HHTTCCSCC
T ss_pred HHHHhcCCC
Confidence 998766543
No 80
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=80.48 E-value=4.1 Score=27.89 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=49.9
Q ss_pred CCCCCCCCCCccchHHHHH--HHhhcceecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVIEK--LLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~--~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+.......... -...-. +.|+ -|...+.. ..+..|++. -.-.++.|+ .|+... ...+|..
T Consensus 19 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~ 91 (106)
T 2ee8_A 19 ICKFCGRHFTKSYNLLIHERTHTDERP-YTCD----ICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAV 91 (106)
T ss_dssp BCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCS----SSCCBCSCHHHHHHHGGGSCCCCTTSCS--SSCCCCSSHHHHHH
T ss_pred ECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC----CccchhCCHHHHHHHHHHhCCCCCeECC--CcCCcccCHHHHHH
Confidence 6999988776544333222 222345 7787 48776644 467889874 344678998 588776 5689999
Q ss_pred HHhhhcCC
Q 038900 94 HFRAQHQN 101 (230)
Q Consensus 94 H~~~~H~~ 101 (230)
|+...+..
T Consensus 92 H~~~H~~~ 99 (106)
T 2ee8_A 92 HKTLHMQT 99 (106)
T ss_dssp HHHHTTSC
T ss_pred HHHHhCCC
Confidence 98765543
No 81
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=78.79 E-value=0.24 Score=32.11 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=22.4
Q ss_pred CCCCcccccccccc--CCCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI--KNDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l--~~~~CP~C~~~~~ 28 (230)
++||+|+..|+.++ .+++||..++++.
T Consensus 21 ~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 21 KSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp TTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred CCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 58999999999995 2357999999885
No 82
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=78.52 E-value=2.6 Score=27.14 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=38.2
Q ss_pred ecCcCCCCCcceeeecC-chhhHhh-cC-CCCCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEK-AC-KHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~-~C-~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
++|+.. +|...+... .|..|++ .- .-.++.|+.++|+... ....|..|+...+..
T Consensus 8 ~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~ 66 (79)
T 2dlk_A 8 MPCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66 (79)
T ss_dssp EECSST--TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTS
T ss_pred ccCCCC--CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCC
Confidence 666643 788776544 5677876 22 3467899877798876 568899998865544
No 83
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=78.18 E-value=2.6 Score=27.22 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=46.0
Q ss_pred CCCCCCCCCCccchHH--HHHHHhhcceecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRV--IEKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~--~e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+....... +..-...-. +.|+ -|...+.. ..+..|+.. -.-.++.|+ .|+... ...+|..
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~ 75 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQ----YCGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGKAFSQSSNLIT 75 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCC-EECS----SSCCEESSHHHHHHHHHHHHTCCCEECT--TTSCEESSHHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCC-eeCC----cCChhhCCHHHHHHHHHHhcCCCCCcCC--CcchhhCChHHHHH
Confidence 4888877665443322 222233455 7887 48776654 356777753 334678897 588776 5678999
Q ss_pred HHhhh
Q 038900 94 HFRAQ 98 (230)
Q Consensus 94 H~~~~ 98 (230)
|++..
T Consensus 76 H~~~H 80 (82)
T 2kmk_A 76 HSRKH 80 (82)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98764
No 84
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=77.93 E-value=2.1 Score=27.30 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=35.2
Q ss_pred ecCcCCCCCcceeeecC-chhhHhh-cCCCCCCCCCCCCCCccc-ChhhHHHHHh
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEK-ACKHSPCSCPLSGCDFLG-SSSQLYQHFR 96 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~-~C~~~~~~Cp~~~C~~~g-~~~~L~~H~~ 96 (230)
+.|+.. ||...+... .+..|++ --.-.|+.|+.++|+... ....|..|++
T Consensus 18 ~~C~~~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 18 HICSHP--GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70 (72)
T ss_dssp EECSST--TTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred eeCCCC--CCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence 678753 788877644 5677876 345578899866798876 4578888864
No 85
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=77.80 E-value=1.7 Score=29.32 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
+|+.|+.++|+... ....|..|++..|..
T Consensus 26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence 78999988999987 468999998777864
No 86
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=77.58 E-value=3.4 Score=27.18 Aligned_cols=24 Identities=33% Similarity=0.767 Sum_probs=10.3
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
++.|+.+.|+... ....|..|+..
T Consensus 35 ~~~C~~~~C~~~f~~~~~l~~H~~~ 59 (89)
T 2wbs_A 35 PYHCDWDGCGWKFARSDELTRHYRK 59 (89)
T ss_dssp CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred CcCCCCCCCCCccCCHHHHHHHHHH
Confidence 3444433444433 23444455443
No 87
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.83 E-value=1.9 Score=30.24 Aligned_cols=77 Identities=9% Similarity=-0.039 Sum_probs=47.9
Q ss_pred CCCCCCCCCCccchHHHHHHH--h---hcceecCcCCCCCcceee---ecCchhhHhhc-CCCCCCCCCCCCCCccc-Ch
Q 038900 19 SCPFDRSPIAYTRNRVIEKLL--E---SVKSVSCKNAEYGCNEML---GYLEKNDHEKA-CKHSPCSCPLSGCDFLG-SS 88 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~--~---~l~~v~C~n~~~GC~~~~---~~~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~ 88 (230)
.|+.|...+.....+.....+ . ... ..|+ -|...+ ....+..|++. -.-.|+.|+ .|+... ..
T Consensus 21 ~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~-~~C~----~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~f~~~ 93 (115)
T 2dmi_A 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNH-ETDN----NNPKRWSKPRKRSLLEMEGKEDAQKVLKCM--YCGHSFESL 93 (115)
T ss_dssp EBSSSSCEESSHHHHHHHHHHTCCCBCSCC-CCCC----CCCSCCSSCCCCCCCCCCCSCCCCSSCBCS--SSCCBCSSH
T ss_pred ECCccCchhcCHHHHHHHHHHhCccccCCC-ccCC----CCCcccccccHHHHHHHhhccCCCcceECC--CCCCccCCH
Confidence 599998776544443333322 1 111 2255 466544 44567778753 334688998 588776 56
Q ss_pred hhHHHHHhhhcCCC
Q 038900 89 SQLYQHFRAQHQNS 102 (230)
Q Consensus 89 ~~L~~H~~~~H~~~ 102 (230)
..|..|+...|...
T Consensus 94 ~~L~~H~~~hh~~~ 107 (115)
T 2dmi_A 94 QDLSVHMIKTKHYQ 107 (115)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhCCcc
Confidence 89999999887653
No 88
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.27 E-value=7.2 Score=27.17 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCCCCCCCCCccchHHHH--HHHhhcceecCcCCCCCcceeee-cCchhhHhhc----CCCCCCCCCCCCCCccc-Chhh
Q 038900 19 SCPFDRSPIAYTRNRVIE--KLLESVKSVSCKNAEYGCNEMLG-YLEKNDHEKA----CKHSPCSCPLSGCDFLG-SSSQ 90 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e--~~~~~l~~v~C~n~~~GC~~~~~-~~~~~~He~~----C~~~~~~Cp~~~C~~~g-~~~~ 90 (230)
.|+.|...+......... .-...-. +.|+ -|...+. ...+..|+.. =.-.++.|+ .|+... ....
T Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~--~C~~~f~~~~~ 81 (124)
T 2dlq_A 9 ECPTCHKKFLSKYYLKVHNRKHTGEKP-FECP----KCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRME 81 (124)
T ss_dssp CCTTTCCCCSSHHHHHHHHHHHSSCCS-CBCT----TTCCBCSSHHHHHHHHHHCCCCSCCCCEECS--SSCCEESSHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHhCCCCCC-eECC----CCCchhcCHHHHHHHHhhhhcCCCCCCeECC--CCCCccCCHHH
Confidence 699998877654433322 2222345 7787 4877654 4567889874 234578898 598876 5689
Q ss_pred HHHHHhhhcCCC
Q 038900 91 LYQHFRAQHQNS 102 (230)
Q Consensus 91 L~~H~~~~H~~~ 102 (230)
|..|+...+...
T Consensus 82 l~~H~~~h~~~~ 93 (124)
T 2dlq_A 82 LRLHMVSHTGEM 93 (124)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHHcCCCC
Confidence 999998766543
No 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=75.70 E-value=4.5 Score=28.46 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=50.7
Q ss_pred CCC--CCCCCCCccchHHHHHHH-hhcceecCcCCCCCcceeeecC-chhhHhhcC-CCCCCCCCCCCCCccc-ChhhHH
Q 038900 19 SCP--FDRSPIAYTRNRVIEKLL-ESVKSVSCKNAEYGCNEMLGYL-EKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLY 92 (230)
Q Consensus 19 ~CP--~C~~~~~~~r~~~~e~~~-~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~ 92 (230)
.|| .|...+...........+ ..-. +.|+ -|...+... .+..|++.- .-.++.|+..+|+... ....|.
T Consensus 7 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 81 (124)
T 1ubd_C 7 ACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCA----ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81 (124)
T ss_dssp ECCSTTCCCEESSHHHHHHHHGGGSCCC-EECT----TTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred cCCCCCCcCccCCHHHHHHHHHHcCCCC-eECC----CCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence 588 787765543322222111 2344 7787 588766544 678898743 3467899877898876 568999
Q ss_pred HHHhhhcCCC
Q 038900 93 QHFRAQHQNS 102 (230)
Q Consensus 93 ~H~~~~H~~~ 102 (230)
.|+...+...
T Consensus 82 ~H~~~h~~~~ 91 (124)
T 1ubd_C 82 THVRIHTGDR 91 (124)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhCCCC
Confidence 9998766544
No 90
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.46 E-value=1.5 Score=27.62 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=25.8
Q ss_pred hhcCCCCCCCCCCCCCCcccChhhHHHHHhhhcCCC
Q 038900 67 EKACKHSPCSCPLSGCDFLGSSSQLYQHFRAQHQNS 102 (230)
Q Consensus 67 e~~C~~~~~~Cp~~~C~~~g~~~~L~~H~~~~H~~~ 102 (230)
++.|+.+|+.|+ .|+.......|..|... ....
T Consensus 3 ~~~C~~~~~~C~--~C~k~f~~~~L~~H~~~-~~~~ 35 (66)
T 2eod_A 3 SGSSGKRTQPCT--YCTKEFVFDTIQSHQYQ-CPRL 35 (66)
T ss_dssp SSCCCCCEEECS--SSCCEEEHHHHHHHHHH-CSSS
T ss_pred cccCCCCCeecc--ccCCccCHHHHHHHHHH-cCCc
Confidence 357999999998 58776668899999887 5443
No 91
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=71.70 E-value=4.2 Score=25.17 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=36.0
Q ss_pred ecCcCCCCCcceeeec-CchhhHhhc-C--CCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 45 VSCKNAEYGCNEMLGY-LEKNDHEKA-C--KHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~-~~~~~He~~-C--~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+.|+ -|...+.. ..+..|++. - .-.|+.|+ .|+... ....|..|+...|.
T Consensus 11 ~~C~----~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 11 YRCK----VCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp EECT----TTCCEESSHHHHHHHHHHHSSSSCCCEECT--TTCCEESCHHHHHHHHHHHTC
T ss_pred eECC----CCcchhCCHHHHHHHHHHHcCCCCcCeECC--CCCCccCCHHHHHHHHHHHcC
Confidence 6676 47776654 457788765 3 56788998 588766 56789999988875
No 92
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.69 E-value=2.9 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.675 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+.++|+... ....|..|++.
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 57899877899887 56788999765
No 93
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=71.21 E-value=0.81 Score=34.65 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCcc---c-----h-HHHHHHHhhcceecCcCCCCCcceeeecC-------------chhhHhhcCCCCCC
Q 038900 18 DSCPFDRSPIAYT---R-----N-RVIEKLLESVKSVSCKNAEYGCNEMLGYL-------------EKNDHEKACKHSPC 75 (230)
Q Consensus 18 ~~CP~C~~~~~~~---r-----~-~~~e~~~~~l~~v~C~n~~~GC~~~~~~~-------------~~~~He~~C~~~~~ 75 (230)
..||.|...+... . + ..+++.+..-. ..|| -|...+.+. +... ++.=.--.+
T Consensus 32 ~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~-~~CP----~Cr~~~~~~~~~~~l~~~~~~~d~~~-~~~i~~L~v 105 (141)
T 3knv_A 32 YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP-QNCA----ACVHEGIYEEGISILESSSAFPDNAA-RREVESLPA 105 (141)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC-EECH----HHHHTTCCCTTTTEECGGGCEECHHH-HHHHHTSEE
T ss_pred cCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC-CCCC----CCCCcccccccccccchhhhcccHHH-HHHHccccc
Confidence 3699998766421 1 2 46788887666 7888 465533221 1111 111123457
Q ss_pred CCCCCCCCcccChhhHHH-HHhhh
Q 038900 76 SCPLSGCDFLGSSSQLYQ-HFRAQ 98 (230)
Q Consensus 76 ~Cp~~~C~~~g~~~~L~~-H~~~~ 98 (230)
.||+.||+|.+...++.. |+...
T Consensus 106 ~Cpn~GC~~~~~l~~l~~~H~~~~ 129 (141)
T 3knv_A 106 VCPSDGCTWKGTLKEYESCHEGRC 129 (141)
T ss_dssp ECCSTTCCCEEEHHHHHHHTTTCC
T ss_pred ccCCCCCCCEeEHHHHHHHHHHHh
Confidence 888889999999999998 87653
No 94
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.28 E-value=6.9 Score=26.91 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=42.1
Q ss_pred HHhhcceecCcCCCCCcceee--ecCchhhHhhcCCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 38 LLESVKSVSCKNAEYGCNEML--GYLEKNDHEKACKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 38 ~~~~l~~v~C~n~~~GC~~~~--~~~~~~~He~~C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
....-. +.|+ -|...+ ....|..|++...-+|+.|+ .|+... ....|..|+...|..
T Consensus 29 ~~~~~~-~~C~----~C~k~F~~~~~~L~~H~~~h~~k~~~C~--~Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 29 IVDKGS-VSCP----TCQAVGRKTIEGLKKHMENCKQEMFTCH--HCGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHHTSC-EECT----TTCSCEESSHHHHHHHHHHHCCCCCCCS--SSCCCCSSHHHHHHHHHHHTCC
T ss_pred hcCCCC-cCCC----CCCCCcccCHHHHHHHHHHHCCCCeECC--CCCCeeCCHHHHHHHhHHhcCC
Confidence 344556 8898 498887 56678899875566789997 588766 467899996667754
No 95
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=69.13 E-value=5.5 Score=20.32 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+.+.|+... ....|..|+..
T Consensus 1 kp~~C~~~~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCCCCCcccCCHhHHHHHHHH
Confidence 36778756788876 46789999865
No 96
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=68.36 E-value=7 Score=19.98 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+.+.|+... ....|..|+..
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence 46788765788766 46789999875
No 97
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.02 E-value=1.5 Score=29.82 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCccccccccccC----CCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIK----NDSCPFDRSPIA 28 (230)
Q Consensus 4 GH~~C~~C~~~l~----~~~CP~C~~~~~ 28 (230)
+|.|-..|+.++. +..||.|+.++.
T Consensus 41 ~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 5999999999852 137999998775
No 98
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=66.54 E-value=8.7 Score=25.66 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=43.6
Q ss_pred CCCC--CCCCCCccchHHH--HHHHhhcceecCcCCCCCcceeeecC-chhhHhh-cCCCCCCCCCCCCCCccc-ChhhH
Q 038900 19 SCPF--DRSPIAYTRNRVI--EKLLESVKSVSCKNAEYGCNEMLGYL-EKNDHEK-ACKHSPCSCPLSGCDFLG-SSSQL 91 (230)
Q Consensus 19 ~CP~--C~~~~~~~r~~~~--e~~~~~l~~v~C~n~~~GC~~~~~~~-~~~~He~-~C~~~~~~Cp~~~C~~~g-~~~~L 91 (230)
.|+. |...+........ ..-...-. +.|++. +|...+... .+..|++ .-.-.++.|+ .|+... ....|
T Consensus 17 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l 91 (100)
T 2ebt_A 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWE--GCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSDHL 91 (100)
T ss_dssp ECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSS--SCCCEESSHHHHHHHHHHHTSCCSCBCS--SSCCBCSSHHHH
T ss_pred EcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCC--CCCCccCCHHHHHHHHHHhCCCCCeECC--CCcCccCCHHHH
Confidence 4765 8766543332221 11122344 778642 687766543 5677775 3445678887 477766 45788
Q ss_pred HHHHhhh
Q 038900 92 YQHFRAQ 98 (230)
Q Consensus 92 ~~H~~~~ 98 (230)
..|++..
T Consensus 92 ~~H~~~H 98 (100)
T 2ebt_A 92 ALHMKRH 98 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887653
No 99
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=65.72 E-value=7.9 Score=29.52 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=25.9
Q ss_pred Ccceeeec-CchhhHhhcC-CCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 53 GCNEMLGY-LEKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 53 GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
.|...+.. ..+..|++.- .-.++.|+.+.|+... ....|..|+...|.
T Consensus 49 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~ 99 (190)
T 1tf6_A 49 GCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99 (190)
T ss_dssp TCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSS
T ss_pred CCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence 56554433 3455666532 2345666644566655 34666677655553
No 100
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=65.23 E-value=13 Score=24.69 Aligned_cols=56 Identities=23% Similarity=0.522 Sum_probs=40.6
Q ss_pred ecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 45 VSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
+.|++. +|...+.. ..+..|++. -.-.++.|+...|+... ....|..|+...+...
T Consensus 16 ~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~ 74 (100)
T 2ebt_A 16 HYCDYP--GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74 (100)
T ss_dssp EECCSS--SCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCC
T ss_pred eEcCCC--CCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence 678753 79887754 467888874 34568899876898876 5689999998765543
No 101
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=65.02 E-value=15 Score=25.20 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCC--CCCCCCccchHHH--HHHHhhcceecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhH
Q 038900 19 SCPF--DRSPIAYTRNRVI--EKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQL 91 (230)
Q Consensus 19 ~CP~--C~~~~~~~r~~~~--e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L 91 (230)
.|+. |...+........ ..-...-. +.|++. .|...+.. ..+..|++. -.-.++.|+ .|+... ....|
T Consensus 8 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l 82 (119)
T 2jp9_A 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFK--DCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRSDHL 82 (119)
T ss_dssp CCCSTTSCCCBSCHHHHHHHHHHHHTTCC-EECCST--TCCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHH
T ss_pred eCCCCCCcchhCCHHHHHHHHHhhCCCCC-ccCCCC--CCcCccCCHHHHHHHHHHcCCCCCccCC--ccCchhCCHHHH
Confidence 5876 8877664443322 22233455 788753 68876654 456778763 234578887 587766 56789
Q ss_pred HHHHhhhcCCC
Q 038900 92 YQHFRAQHQNS 102 (230)
Q Consensus 92 ~~H~~~~H~~~ 102 (230)
..|+...+...
T Consensus 83 ~~H~~~h~~~~ 93 (119)
T 2jp9_A 83 KTHTRTHTGEK 93 (119)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHhcCCC
Confidence 99988766544
No 102
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=63.51 E-value=4.6 Score=29.78 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=53.0
Q ss_pred CCCCCCCCCCccchHHHHHHH--hhcceecCcCCCCCcceeeecC-chhhHhhcC-CCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVIEKLL--ESVKSVSCKNAEYGCNEMLGYL-EKNDHEKAC-KHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~--~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~C-~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+....++.....+ ..-. +.|+ -|+..+... .|..|+..= .-.|+.|+ .|+... ....|..
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~----~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~ 96 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCR----YCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSS 96 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSC-EECS----SSSCEESSHHHHHHHHHHHHTCCCEEES--SSCCEESSHHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCC----ccCeecccccchhhhccccCCCccccCC--CCCCCcCCHHHHHH
Confidence 599998877654444333222 2345 7887 598877654 677888642 33688997 588876 5689999
Q ss_pred HHhhhcCCC
Q 038900 94 HFRAQHQNS 102 (230)
Q Consensus 94 H~~~~H~~~ 102 (230)
|+...|...
T Consensus 97 H~~~hh~~~ 105 (133)
T 2lt7_A 97 HIKSVHSQD 105 (133)
T ss_dssp HHHHHTCCC
T ss_pred HhHHhcCCC
Confidence 999998753
No 103
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.38 E-value=7.9 Score=24.78 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=35.8
Q ss_pred ecCcCCCCCcceeeec-CchhhHhh-cCC--CCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 45 VSCKNAEYGCNEMLGY-LEKNDHEK-ACK--HSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~-~~~~~He~-~C~--~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
+.|+ -|...+.. ..+..|+. .-. -.++.|+ .|+... ....|..|+...|...
T Consensus 16 ~~C~----~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 16 YECY----ICHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp EECT----TTCCEESCHHHHHHHHHHHSSSSCSSEECS--SSSCEESSHHHHHHHHHHTSCCS
T ss_pred eECC----CcCchhCCHHHHHHHHHHhcCCCCCccCCC--CCCCccCCHHHHHHHHHHhCCCC
Confidence 5666 36665544 45677765 333 2578898 588876 5689999999999764
No 104
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.38 E-value=9.7 Score=26.10 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCCCCCCCCCccchHHH--HHHHhhcceecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVI--EKLLESVKSVSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~--e~~~~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.| .|...+........ ..-...-. +.|+ -|...+... .+..|++. -.-.++.|+ .|+... ....|..
T Consensus 12 ~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~ 83 (110)
T 2csh_A 12 PC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCG----VCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSFHR 83 (110)
T ss_dssp EC-TTSCEESSHHHHHHHHHHHSCCCS-EECT----TTSCEESSSHHHHHHHTTTCCCCCEECS--SSCCEESCHHHHHH
T ss_pred ec-cCCCccCCHHHHHHHHHHcCCCcC-ccCC----CCCcccCCHHHHHHHHHHcCCCCCeeCC--CCcchhcCHHHHHH
Confidence 58 88776654333322 22222345 7887 487766654 67889874 234678898 588876 4689999
Q ss_pred HHhhhcCC
Q 038900 94 HFRAQHQN 101 (230)
Q Consensus 94 H~~~~H~~ 101 (230)
|++..|..
T Consensus 84 H~~~~~~~ 91 (110)
T 2csh_A 84 HVTSCTKS 91 (110)
T ss_dssp HHHHHHHH
T ss_pred HHHHcccc
Confidence 99887753
No 105
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.76 E-value=3.8 Score=27.33 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=22.0
Q ss_pred CCCccccccccccCCCCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
.|..+|..|..++-..+|..|.++|.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CCceechhHhCcccCCcCccCCCccc
Confidence 37899999999875458999999886
No 106
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=62.54 E-value=11 Score=28.66 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=10.3
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
++.|+.+.|+... ....|..|+..
T Consensus 104 ~~~C~~~~C~k~f~~~~~L~~H~~~ 128 (190)
T 1tf6_A 104 VYVCHFENCGKAFKKHNQLKVHQFS 128 (190)
T ss_dssp CCEECSSSSCEECSSHHHHHHHHGG
T ss_pred eeeCCCCCCccccCCHHHHHHHHHH
Confidence 3444333444443 23445555443
No 107
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.48 E-value=4.6 Score=26.68 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=22.2
Q ss_pred CCCccccccccccCCCCCCCCCCCCCc
Q 038900 3 NGHMVCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 3 ~GH~~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
.|.++|..|..++...+|+.|.++|..
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ 27 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC
Confidence 378899999998754589999998863
No 108
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=59.65 E-value=12 Score=27.26 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=47.9
Q ss_pred CCCCCCCCCCccchHHHHHHHhhcce----------ecCcCCCCCcceeeec-CchhhHhhcC-CCCCCCCCCCCCCccc
Q 038900 19 SCPFDRSPIAYTRNRVIEKLLESVKS----------VSCKNAEYGCNEMLGY-LEKNDHEKAC-KHSPCSCPLSGCDFLG 86 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e~~~~~l~~----------v~C~n~~~GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~~C~~~g 86 (230)
.|+.|...+.....+.......-... +.|+ -|...+.. ..+..|++.= .-.++.|+.++|+...
T Consensus 27 ~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 102 (155)
T 2rpc_A 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP----REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102 (155)
T ss_dssp SCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCT----TSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred ccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCC----CcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence 69999887654444333322211110 1344 46665543 3567787632 3467899877898877
Q ss_pred -ChhhHHHHHhhhcCCC
Q 038900 87 -SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 87 -~~~~L~~H~~~~H~~~ 102 (230)
....|..|+...+...
T Consensus 103 ~~~~~L~~H~~~h~~~~ 119 (155)
T 2rpc_A 103 ARSENLKIHKRTHTGEK 119 (155)
T ss_dssp SCHHHHHHHHTTTCSSC
T ss_pred CCHHHHHHHHHhhCCCC
Confidence 5689999998655443
No 109
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=58.92 E-value=11 Score=26.02 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=47.6
Q ss_pred CCC--CCCCCCCccchHH--HHHHHhhcceecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhH
Q 038900 19 SCP--FDRSPIAYTRNRV--IEKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQL 91 (230)
Q Consensus 19 ~CP--~C~~~~~~~r~~~--~e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L 91 (230)
.|+ .|...+....... +..-...-. +.|+ -|...+.. ..+..|++. -.-.++.|+.+.|+... ...+|
T Consensus 38 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L 112 (119)
T 2jp9_A 38 QCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCK----TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112 (119)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECT----TTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHH
T ss_pred cCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCC----ccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHH
Confidence 598 7987665443332 222233445 7887 58887654 466778763 33467889545798877 46899
Q ss_pred HHHHhh
Q 038900 92 YQHFRA 97 (230)
Q Consensus 92 ~~H~~~ 97 (230)
..|++.
T Consensus 113 ~~H~~~ 118 (119)
T 2jp9_A 113 VRHHNM 118 (119)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999864
No 110
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.82 E-value=6.1 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCccccccccccCCCCCCCCCCCCCc
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
|.++|..|..++-..+|+.|.++|..
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCC
T ss_pred CCeEchhHhchhhCccCcccCCcccC
Confidence 56899999998754589999999874
No 111
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=58.78 E-value=13 Score=24.19 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCC--CCCCCCCccchHH--HHHHHhhcceecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhH
Q 038900 19 SCP--FDRSPIAYTRNRV--IEKLLESVKSVSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQL 91 (230)
Q Consensus 19 ~CP--~C~~~~~~~r~~~--~e~~~~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L 91 (230)
.|+ .|...+....... +..-...-. +.|+ -|...+... .+..|+.. -.-.++.|+ .|+... ....|
T Consensus 6 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l 78 (90)
T 1a1h_A 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCR----ICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDER 78 (90)
T ss_dssp ECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECT----TTCCEESCHHHHHHHHHHHHCCCCEECT--TTCCEESSHHHH
T ss_pred ECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCC----CCCcccCCHHHHHHHHHHcCCCCCccCC--CCCchhCCHHHH
Confidence 487 5877665433322 222223445 7887 487766544 56778763 344678897 488776 46789
Q ss_pred HHHHhhhcC
Q 038900 92 YQHFRAQHQ 100 (230)
Q Consensus 92 ~~H~~~~H~ 100 (230)
..|+...+.
T Consensus 79 ~~H~~~H~~ 87 (90)
T 1a1h_A 79 KRHTKIHLR 87 (90)
T ss_dssp HHHHGGGGC
T ss_pred HHHHHHhcc
Confidence 999876543
No 112
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.20 E-value=13 Score=23.21 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=36.2
Q ss_pred ecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 45 VSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
+.|+ -|...+.. ..+..|++. -.-.++.|+ .|+... ....|..|+...|...
T Consensus 10 ~~C~----~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~ 64 (70)
T 1x5w_A 10 EKCS----ECSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHGDM 64 (70)
T ss_dssp EECS----SSSCEESSHHHHHHHHGGGCCSCSEECS--SSSCEESSHHHHHHHHHHHHSSS
T ss_pred eECC----CCCcccCCHHHHHHHHHHcCCCCCEeCC--CCCCccCCHHHHHHHHHHHhCCC
Confidence 5565 47666554 356778764 344678898 588876 5689999999888653
No 113
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=57.02 E-value=9 Score=29.19 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=46.5
Q ss_pred CCCCCCCCCCccchHHHH--HHHhhcceecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRVIE--KLLESVKSVSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~e--~~~~~l~~v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+......... .-...-. +.|+ -|...+... .+..|++. -.-.++.|+ .|+... ....|..
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~ 151 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKP-YACP----ECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHT 151 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCC-EECT----TTCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCC-CcCC----CCCCccCCHHHHHHHHHHhCCCCCeECC--CCCcccCCHHHHHH
Confidence 588887765543332222 2223345 7787 577766544 56777763 334677887 587766 4568888
Q ss_pred HHhhhcCCC
Q 038900 94 HFRAQHQNS 102 (230)
Q Consensus 94 H~~~~H~~~ 102 (230)
|+...+...
T Consensus 152 H~~~H~~~~ 160 (190)
T 2i13_A 152 HQRTHTGEK 160 (190)
T ss_dssp HHHHHHCCC
T ss_pred HHHhcCCCC
Confidence 887765543
No 114
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=56.82 E-value=12 Score=22.37 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred Ccceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 53 GCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 53 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
-|...+.. ..+..|++. -.-.|+.|+ .|+... ....|..|+...|...
T Consensus 7 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 7 VCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TTCCCBSCHHHHHHHHHTTTSSCSEECT--TTCCEESSHHHHHHHHTTTSCCS
T ss_pred CCccccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHHHHHHHcCCc
Confidence 46555443 356677764 233578887 488776 5689999988888653
No 115
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=56.43 E-value=14 Score=28.10 Aligned_cols=78 Identities=15% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCCCCCCCCCccchHH--HHHHHhhcceecCcCCCCCcceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHH
Q 038900 19 SCPFDRSPIAYTRNRV--IEKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQ 93 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~--~e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~ 93 (230)
.|+.|...+....... +..-...-. +.|+ -|...+.. ..+..|+.. -.-.++.|+ .|+... ...+|..
T Consensus 51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~ 123 (190)
T 2i13_A 51 KCPECGKSFSDKKDLTRHQRTHTGEKP-YKCP----ECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAHLRA 123 (190)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHCCCC-EECT----TTCCEESCHHHHHHHHHHHHTCCCEECT--TTCCEESSHHHHHH
T ss_pred cCCCcCchhCCHHHHHHHHHhcCCCCC-ccCc----ccCCccCCHHHHHHHHHhcCCCCCCcCC--CCCCccCCHHHHHH
Confidence 5999977665433322 222223345 7787 58776654 456778763 344678887 588766 4678999
Q ss_pred HHhhhcCCCc
Q 038900 94 HFRAQHQNSS 103 (230)
Q Consensus 94 H~~~~H~~~~ 103 (230)
|+...+....
T Consensus 124 H~~~h~~~~~ 133 (190)
T 2i13_A 124 HQRTHTGEKP 133 (190)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHhCCCCC
Confidence 9887665543
No 116
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=53.16 E-value=6.9 Score=20.75 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=16.3
Q ss_pred ecCcCCCCCcceeeecCchhhHhhcC
Q 038900 45 VSCKNAEYGCNEMLGYLEKNDHEKAC 70 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~~~~~He~~C 70 (230)
|.|| -|...++-..+..|.+.|
T Consensus 7 vqcp----vcqq~mpaahin~hldrc 28 (29)
T 3vhs_A 7 VQCP----VCQQMMPAAHINSHLDRC 28 (29)
T ss_dssp EECT----TTCCEEEGGGHHHHHHHH
T ss_pred eeCh----HHHHhCcHHHHHHHHhcc
Confidence 6777 577777777777777665
No 117
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=53.11 E-value=14 Score=23.19 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=33.9
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
+.|+ -|...+... .+..|++. -.-.|+.|+ .|+... ....|..|++..+..+
T Consensus 15 ~~C~----~C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~ 69 (72)
T 1x6e_A 15 YGCV----ECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGP 69 (72)
T ss_dssp EECS----SSCCEESSHHHHHHHHHGGGCSCCEECS--SSCCEESSHHHHHHHHHHHHSSS
T ss_pred ccCC----CCCCccCCHHHHHHHHHhcCCCCCeECC--CCCcccCCHHHHHHHHHhcCCCC
Confidence 5665 366655443 46677653 234678897 488776 4678999988765543
No 118
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=53.08 E-value=6 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=18.4
Q ss_pred ecCcCCCCCcceeeecCchhhHhhcCC
Q 038900 45 VSCKNAEYGCNEMLGYLEKNDHEKACK 71 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~~~~~He~~C~ 71 (230)
+.||| --.-.+...+++.|...|.
T Consensus 6 v~CPy---d~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 6 VICPY---DSNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp EECTT---TSSCEECGGGHHHHHHHHH
T ss_pred EECCC---CCCeEeCHHHHHHHHHHHh
Confidence 78886 4567888888888887775
No 119
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=52.12 E-value=0.66 Score=31.17 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=44.1
Q ss_pred CCCCCCCCCCccchHHH--HHHHhhcceecCcCCCCCcceeeec-CchhhHhhcCCCCCCCCCCCCCCccc-ChhhHHHH
Q 038900 19 SCPFDRSPIAYTRNRVI--EKLLESVKSVSCKNAEYGCNEMLGY-LEKNDHEKACKHSPCSCPLSGCDFLG-SSSQLYQH 94 (230)
Q Consensus 19 ~CP~C~~~~~~~r~~~~--e~~~~~l~~v~C~n~~~GC~~~~~~-~~~~~He~~C~~~~~~Cp~~~C~~~g-~~~~L~~H 94 (230)
.|+.|...+........ ..-...-. +.|+ -|...+.. ..+..|++.-.-.++.|+ .|+... ....|..|
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~----~C~k~f~~~~~L~~H~~~h~~~~~~c~--~C~~~f~~~~~L~~H 77 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACD----ICGRKFARSDERKRHRDIQHILPILED--KVEELLSKNYHLENE 77 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCC-EECT----TTCCEESSHHHHHHHHHHHTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCC-ccCC----CCCCccCCHHHHHHHHHHhCCCcchHH--HHHHHHHHHhhhHHH
Confidence 48888776654333222 12223345 6776 47766544 456677764433556665 576655 45678888
Q ss_pred HhhhcCC
Q 038900 95 FRAQHQN 101 (230)
Q Consensus 95 ~~~~H~~ 101 (230)
++..|..
T Consensus 78 ~~~~h~~ 84 (88)
T 1llm_C 78 VARLKKL 84 (88)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877753
No 120
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=51.06 E-value=9.5 Score=20.43 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+.+.|+... ....|..|+....
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~ 32 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHhC
Confidence 56788866798876 4578999987543
No 121
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=51.04 E-value=17 Score=21.32 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=29.3
Q ss_pred Ccceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 53 GCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 53 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
-|...+.. ..+..|++. -.-.|+.|+ .|+... ....|..|+...+.
T Consensus 6 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 6 ECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TTCCBCSSHHHHHHHHHHTSSCCCEECS--SSSCEESSHHHHHHHHHSSSS
T ss_pred CCcCcCCCHHHHHHHHHhcCCCCCccCC--CCCchhcCHHHHHHHHHHhcc
Confidence 45554433 346667653 334578887 488766 56789999876554
No 122
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.10 E-value=19 Score=24.34 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQN 101 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~ 101 (230)
..|+ -|...+... .|..|++. =.-+|+.|+ .|+... ....|..|++..|..
T Consensus 29 h~C~----~Cgk~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 29 HLCP----VCGESFASKGAQERHLRLLHAAQVFPCK--YCPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp EECT----TSCCEESSHHHHHHHHHTTSCSSSEECT--TSSCEESSHHHHHHHHHTTCTT
T ss_pred EECC----CCCCCcCcHHHHhhhhhhccCCCccCCC--CCCCEeCCHHHHHHhCcccCcC
Confidence 5566 477766654 67788863 345788997 588876 568999999988865
No 123
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.88 E-value=8.4 Score=25.34 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=21.5
Q ss_pred CCccccccccccCCCCCCCCCCCCCc
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPIAY 29 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~~~ 29 (230)
|-.+|..|..++...+|+.|.++|..
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~ 27 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVLE 27 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCS
T ss_pred CCccchhHHhhhcCCccccCCCeecc
Confidence 66899999998754589999998863
No 124
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.19 E-value=12 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=35.0
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhcC----CCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKAC----KHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~C----~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
+.|+ -|...+... .+..|++.= .-.++.|+ .|+... ....|..|+...|...
T Consensus 8 ~~C~----~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 8 LQCE----ICGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp EECS----SSCCEESSHHHHHHHHHHHHHHTTTCCEECT--TTCCEESSHHHHHHHHHHTSTTT
T ss_pred eECC----CCCCeeCCHHHHHHHHHHhhccCCCcccCCC--CCCchhCCHHHHHHHHHHhCCCC
Confidence 5565 366655443 456666532 24678897 488876 4689999999989764
No 125
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=47.09 E-value=10 Score=18.51 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=16.1
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
|+.|+.+.|+... ....|..|...
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 4566655787765 45788888764
No 126
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=47.08 E-value=7.5 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 72 HSPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 72 ~~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
-+|+.|+.+.|+... ....|..|...
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 467889766798876 45789999875
No 127
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=47.07 E-value=5 Score=32.60 Aligned_cols=26 Identities=4% Similarity=-0.120 Sum_probs=8.4
Q ss_pred eecCcCCCCCcceee-----ecCchhhHhhc
Q 038900 44 SVSCKNAEYGCNEML-----GYLEKNDHEKA 69 (230)
Q Consensus 44 ~v~C~n~~~GC~~~~-----~~~~~~~He~~ 69 (230)
++.|++...||+..+ +..++++|.+.
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHHH
Confidence 488999999999998 88888888764
No 128
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=46.96 E-value=11 Score=24.15 Aligned_cols=53 Identities=30% Similarity=0.616 Sum_probs=35.2
Q ss_pred ecCcCCCCCcceeeec-CchhhHhhc----CC----CCCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 45 VSCKNAEYGCNEMLGY-LEKNDHEKA----CK----HSPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~-~~~~~He~~----C~----~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+.|... +|...+.- .++..|... -. -.++.|.-.+|++.+ ....|..|++..|
T Consensus 2 l~C~W~--~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 2 LKCKWK--ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCCT--TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CeEeeC--CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 456664 67764433 346667531 11 126789888999877 4689999999887
No 129
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=46.27 E-value=13 Score=19.86 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
.|+.|+.++|+... ....|..|...
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 46778766788876 46789999765
No 130
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.74 E-value=22 Score=17.00 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|....+
T Consensus 1 k~~~C~--~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 1 KEHKCP--HCDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCCCS--SCCCCCCTTTHHHHHHHHHH
T ss_pred CCCcCC--CCCcccCCHHHHHHHHHHhc
Confidence 367787 477665 4578888987543
No 131
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.73 E-value=6.3 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=18.4
Q ss_pred CCCccccccccccCCCCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
.|.++|..|..++-.++|..|.++|.
T Consensus 52 ~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 52 DNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCEEEChhHhhhhcCCccccCCCccc
Confidence 46677777777764457888888775
No 132
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=45.63 E-value=32 Score=24.14 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=39.7
Q ss_pred hcceecCcCCCCCcceeeecC-chhhHhhcCCCCCCCCCCCCCCccc-ChhhHHHHHhhhcCCC
Q 038900 41 SVKSVSCKNAEYGCNEMLGYL-EKNDHEKACKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNS 102 (230)
Q Consensus 41 ~l~~v~C~n~~~GC~~~~~~~-~~~~He~~C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~ 102 (230)
.-. +.|+ -|...+... .+..|++.= -.|+.|+ .|+... ....|..|+...|.+.
T Consensus 72 ~~~-~~C~----~C~k~f~~~~~l~~H~~~H-~~~~~C~--~C~k~f~~~~~l~~H~~~h~~~~ 127 (129)
T 2wbt_A 72 ISQ-FVCP----LCLMPFSSSVSLKQHIRYT-EHTKVCP--VCKKEFTSTDSALDHVCKKHNIC 127 (129)
T ss_dssp HCS-EECT----TTCCEESSHHHHHHHHHHT-CCCCBCT--TTCCBCSSHHHHHHHHHHTTCCC
T ss_pred CCC-eECC----CCCcccCCHhHHHHHHHHC-CCCCCCC--CCCcccCCHHHHHHHHHHHCCcc
Confidence 345 7787 488876654 577888754 5788997 588776 4678999999888764
No 133
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=45.44 E-value=23 Score=17.07 Aligned_cols=25 Identities=32% Similarity=0.693 Sum_probs=17.6
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
|+.|+ .|+... ....|..|....|.
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQ--YCEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCS--SSSCCCSCSHHHHHHHHHHTS
T ss_pred CccCC--CCCCccCCHHHHHHHHHHHcc
Confidence 56787 477665 45789999877554
No 134
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.88 E-value=11 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=20.6
Q ss_pred CCccccccccccCCCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
|.++|..|..++...+|+.|.++|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~ 26 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIV 26 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCC
T ss_pred CCcCchhHHccccCCcCccCCcccc
Confidence 5679999999875458999999886
No 135
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=43.72 E-value=16 Score=21.52 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=26.8
Q ss_pred cceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 54 CNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 54 C~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
|...+.. ..+..|++. -.-.|+.|+ .|+... ....|..|+...|
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh 56 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCE--FCEYAAAQKTSLRYHLERHH 56 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECS--SSSCEESSHHHHHHHHHHHC
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCC--CCcchhCCHHHHHHHHHHhc
Confidence 5444332 234555542 123577887 487766 5678999988776
No 136
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=41.96 E-value=23 Score=17.22 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.0
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
|+.|+ .|+... ....|..|+...|.
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACG--LCNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCT--TTCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCc--ccCcccCChHHHHHHHHHHcc
Confidence 56776 577665 45789999655564
No 137
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.14 E-value=14 Score=24.32 Aligned_cols=25 Identities=4% Similarity=-0.253 Sum_probs=20.6
Q ss_pred CCccccccccccCCCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
|..+|..|..++-..+|+.|.++|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC
Confidence 5678999998865458999999886
No 138
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=40.92 E-value=29 Score=16.61 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
|+.|+ .|+... ....|..|....
T Consensus 2 ~~~C~--~C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCE--VCTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCT--TTCCBCSSHHHHHHHHHHH
T ss_pred CeECC--CCCcccCCHHHHHHHHHHh
Confidence 56786 577765 457889998763
No 139
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.10 E-value=15 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.4
Q ss_pred CCCccccccccccCCCCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
.|..+|..|.. ....+|+.|.++|.
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCC
T ss_pred cCCEECHHHhh-cCCCccccCCCeec
Confidence 57899999998 33358999999886
No 140
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=38.42 E-value=6.3 Score=26.89 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=35.8
Q ss_pred ecCcCCCCCcceeeecCchhhHhhcCCCC-CCCCCCCCCCcccChhhHHHH
Q 038900 45 VSCKNAEYGCNEMLGYLEKNDHEKACKHS-PCSCPLSGCDFLGSSSQLYQH 94 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~~~~~He~~C~~~-~~~Cp~~~C~~~g~~~~L~~H 94 (230)
+.|- +|.+.+.=.+++.|...|.-. .+.|- .|+......+...|
T Consensus 11 F~C~----~Cgd~lKK~kv~~H~~~Cr~~~~~SCI--DC~~~F~~~~y~~H 55 (79)
T 1wjv_A 11 FTCN----ACGESVKKIQVEKHVSNCRNCECLSCI--DCGKDFWGDDYKSH 55 (79)
T ss_dssp EEES----SSCCEEETTHHHHHHHHCTTCCEEEET--TTTEEEEGGGTTTC
T ss_pred EEcC----CCCCeeecccchhHHhhCCCCCcEEec--ccCCeeCCCCEeCE
Confidence 6675 899999999999999999874 68886 68777766777766
No 141
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.08 E-value=12 Score=25.49 Aligned_cols=15 Identities=20% Similarity=0.744 Sum_probs=10.8
Q ss_pred CC-CCCcccccccccc
Q 038900 1 CE-NGHMVCTTCRSKI 15 (230)
Q Consensus 1 C~-~GH~~C~~C~~~l 15 (230)
|+ ||+.||..|....
T Consensus 46 C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 46 CPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CTTTCCEECSSSCSBC
T ss_pred eCCCCCccccccCCch
Confidence 54 7778887777665
No 142
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=36.76 E-value=23 Score=17.06 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
|+.|+ .|+... ....|..|....
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~H 25 (29)
T 1rik_A 2 KFACP--ECPKRFMRSDHLTLHILLH 25 (29)
T ss_dssp CEECS--SSSCEESCSHHHHHHHTGG
T ss_pred CccCC--CCCchhCCHHHHHHHHHHh
Confidence 56676 577665 457888898653
No 143
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.75 E-value=43 Score=21.22 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=33.6
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhc-CCC----CCCCCCCCCCCccc-ChhhHHHHHhhhcCCCc
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKA-CKH----SPCSCPLSGCDFLG-SSSQLYQHFRAQHQNSS 103 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~-C~~----~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~~ 103 (230)
+.|+ -|...+... .+..|++. -.- .++.|+ .|+... ....|..|+...|....
T Consensus 16 ~~C~----~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~ 75 (86)
T 1x6h_A 16 YACS----HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDG 75 (86)
T ss_dssp EECS----SSSCEESSHHHHHHHHHHTTCSSCCCCCEECS--SSCCEESCHHHHHHHHHHCCCCCS
T ss_pred CcCC----CCCCccCCHHHHHHHHHHhcCCcCCCcceECC--CCCChhCCHHHHHHHHHHccCCCC
Confidence 5565 366655443 45667642 222 567887 587766 56789999888776543
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.25 E-value=20 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=13.6
Q ss_pred CCCCccccccccccCC-CCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKIKN-DSCPFDRSPI 27 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~~-~~CP~C~~~~ 27 (230)
.||+.| ...+.. .+||.|++..
T Consensus 72 ~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred hCcCee----cccCCCCCCCcCCCCCc
Confidence 366666 233332 5899998753
No 145
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=35.68 E-value=41 Score=17.41 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|....
T Consensus 10 k~~~C~--~C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCP--DCDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCT--TTCCCBSSHHHHHHHHGGG
T ss_pred CCccCC--CCCcccCcHHHHHHHHHHh
Confidence 578897 587765 467899997653
No 146
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=34.91 E-value=47 Score=16.94 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 1 kp~~C~--~C~k~F~~~~~L~~H~~~H~ 26 (33)
T 1rim_A 1 YKFACP--ECPKRFMRSDHLSKHITLHE 26 (33)
T ss_dssp CCCCCS--SSCCCCSSHHHHHHHHHHHT
T ss_pred CcccCC--CCCchhCCHHHHHHHHHHhC
Confidence 367787 587765 5678999987533
No 147
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.00 E-value=9 Score=26.05 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=35.7
Q ss_pred ecCcCCCCCcceeee--cCchhhHhhcCC--CCCCCCCCCCCCccc-ChhhHHHHHhhhcCCCc
Q 038900 45 VSCKNAEYGCNEMLG--YLEKNDHEKACK--HSPCSCPLSGCDFLG-SSSQLYQHFRAQHQNSS 103 (230)
Q Consensus 45 v~C~n~~~GC~~~~~--~~~~~~He~~C~--~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~~~~ 103 (230)
+.|+ -|...+. ...|..|++... -.++.|+ .|+... ....|..|++..|....
T Consensus 25 ~~C~----~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~~~kp 82 (98)
T 2gqj_A 25 AVCP----TCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEHSAKP 82 (98)
T ss_dssp CCCT----TTCCCCSSCSHHHHHHHHHHHHHHHHHSCS--SSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred cCCC----CCCCChhhhHHHHHHHHHHHcCCCCCEECC--CCCCccCCHHHHHHHHHHHcCCCC
Confidence 6776 4777664 345666765432 2578887 487766 56799999998886643
No 148
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.13 E-value=35 Score=16.04 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.2
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
|+.|+ .|+... ....|..|...
T Consensus 1 ~~~C~--~C~k~f~~~~~l~~H~~~ 23 (27)
T 1znf_A 1 XYKCG--LCERSFVEKSALSRHQRV 23 (27)
T ss_dssp -CBCS--SSCCBCSSHHHHHHHGGG
T ss_pred CccCC--CCCCcCCCHHHHHHHHHH
Confidence 35676 476665 45788888765
No 149
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.40 E-value=24 Score=16.95 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+ .|+... ....|..|...
T Consensus 2 k~~~C~--~C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCS--VCGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECS--SSCCEESCHHHHHHHHTT
T ss_pred cCccCC--CCCcccCCHHHHHHHHHh
Confidence 356676 577665 45788888764
No 150
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=30.52 E-value=32 Score=21.27 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=31.5
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+.|+.. +|...+... .+..|++. -.-.++.|+ .|+... ....|..|++.
T Consensus 20 ~~C~~~--~C~k~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~ 71 (73)
T 1f2i_G 20 YACPVE--SCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRT 71 (73)
T ss_dssp EECSST--TBCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHTT
T ss_pred cCCcCC--CCCCccCCHHHHHHHHHhhCCCCCeECC--CCCchhCCHHHHHHHHHh
Confidence 667632 687766554 56677753 344678887 477765 45778888653
No 151
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.42 E-value=21 Score=23.90 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=12.7
Q ss_pred CCCCccccccccccC
Q 038900 2 ENGHMVCTTCRSKIK 16 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~ 16 (230)
.||+.||..|...+.
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999998864
No 152
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.28 E-value=12 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=13.9
Q ss_pred CCccccccccccCCCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
|-++|..|..++-.++|..|.++|.
T Consensus 50 g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CEEechHHhCcCcCccCcccCCcCC
Confidence 4445555555543346777766664
No 153
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.98 E-value=29 Score=16.54 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+ .|+... ....|..|...
T Consensus 2 k~~~C~--~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCS--LCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECS--SSSCEESSHHHHHHHHHH
T ss_pred cCccCC--CcChhhCCHHHHHHHHHH
Confidence 356776 587765 45788888754
No 154
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=29.81 E-value=11 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=20.0
Q ss_pred ecCchhhHhhcCCCCCCCCCCCCCCcc
Q 038900 59 GYLEKNDHEKACKHSPCSCPLSGCDFL 85 (230)
Q Consensus 59 ~~~~~~~He~~C~~~~~~Cp~~~C~~~ 85 (230)
....+..|...|+|+.|.|. .|...
T Consensus 18 ~~~~lKGHKr~C~~r~C~C~--kC~li 42 (52)
T 1lpv_A 18 LKITLKGHKRYCKFRYCTCE--KCRLT 42 (52)
T ss_dssp CCCTTTTCGGGCTTTTCCSH--HHHHH
T ss_pred CccccCCccCccCCCCCcCC--CCcCc
Confidence 35678899999999999996 57543
No 155
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.80 E-value=10 Score=26.98 Aligned_cols=25 Identities=32% Similarity=0.748 Sum_probs=13.1
Q ss_pred CCccccccccccC-CCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIK-NDSCPFDRSPIA 28 (230)
Q Consensus 4 GH~~C~~C~~~l~-~~~CP~C~~~~~ 28 (230)
|+..|..|-.... .+.||.|.+++.
T Consensus 47 ~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 47 GHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp TEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred CEEECccccchhhccccCcchhhHHH
Confidence 3334666655532 135677766653
No 156
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.45 E-value=38 Score=17.17 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|....+
T Consensus 6 k~~~C~--~C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 6 SGYVCA--LCLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CSEECS--SSCCEESSHHHHHHHHHHTS
T ss_pred CCeECC--CCcchhCCHHHHHHHHHHHc
Confidence 467787 587765 4678999987644
No 157
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.12 E-value=22 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=17.6
Q ss_pred CCCCcccccccccc-C---CCCCCCCCCCCC
Q 038900 2 ENGHMVCTTCRSKI-K---NDSCPFDRSPIA 28 (230)
Q Consensus 2 ~~GH~~C~~C~~~l-~---~~~CP~C~~~~~ 28 (230)
.|||.|=..|+.++ . +..||.|+.++.
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 46677777777763 1 146888887764
No 158
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.09 E-value=42 Score=18.92 Aligned_cols=26 Identities=38% Similarity=0.856 Sum_probs=19.4
Q ss_pred CCCCCCCCCc-ccChhhHHHHHhhhcCCC
Q 038900 75 CSCPLSGCDF-LGSSSQLYQHFRAQHQNS 102 (230)
Q Consensus 75 ~~Cp~~~C~~-~g~~~~L~~H~~~~H~~~ 102 (230)
..|| -|.. .++..+|..|+...|...
T Consensus 6 FiCP--~C~~~l~s~~~L~~Hye~~H~~~ 32 (34)
T 3mjh_B 6 FICP--QCMKSLGSADELFKHYEAVHDAG 32 (34)
T ss_dssp EECT--TTCCEESSHHHHHHHHHHHTSSS
T ss_pred cCCc--HHHHHcCCHHHHHHHHHhccccC
Confidence 4577 4744 357899999999999753
No 159
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.95 E-value=35 Score=16.18 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=15.6
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
|+.|+ .|+... ....|..|....
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 2 PLKCR--ECGKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp CEECT--TTSCEESCHHHHHHHHHHH
T ss_pred CccCC--CCCCccCChhHHHHHHHHh
Confidence 56676 477765 457888887653
No 160
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.73 E-value=64 Score=19.92 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=28.7
Q ss_pred Ccceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 53 GCNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 53 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
-|...+.. ..+..|++. -.-.++.|+ .|+... ....|..|+...+.
T Consensus 22 ~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 22 RCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp TSSCCBSCHHHHHHHHHHHCCCCSEECT--TTCCEESCHHHHHHHHHHHCC
T ss_pred CCCceeCCHHHHHHHHHHcCCCCCEECC--CCCchhCCHHHHHHHHHhcCC
Confidence 46555443 345666653 234678887 587766 46789999876443
No 161
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=28.72 E-value=8.1 Score=27.31 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=18.9
Q ss_pred CCCccccccccccC-C-CCCCCCCCCCC
Q 038900 3 NGHMVCTTCRSKIK-N-DSCPFDRSPIA 28 (230)
Q Consensus 3 ~GH~~C~~C~~~l~-~-~~CP~C~~~~~ 28 (230)
+.|-.|-.|+..+. . ..||.|..++.
T Consensus 45 ~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 45 NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 35778888887752 1 47999998774
No 162
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.05 E-value=44 Score=15.90 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
.|+.|+ .|+... ....|..|...
T Consensus 2 k~~~C~--~C~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 2 KPYQCD--YCGRSFSDPTSKMRHLET 25 (30)
T ss_dssp CCEECT--TTCCEESCHHHHHHHHHT
T ss_pred cCccCC--CCCcccCCHHHHHHHHHH
Confidence 356776 477765 45788899765
No 163
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.02 E-value=64 Score=20.12 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=28.2
Q ss_pred cceeeec-CchhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 54 CNEMLGY-LEKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 54 C~~~~~~-~~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
|...+.. ..+..|++. -.-.|+.|+ .|+... ....|..|+...+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECS--SSCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCC--CCCCccCCHHHHHHHHHHhCC
Confidence 5554433 355667653 223578887 487766 46789999876443
No 164
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=27.44 E-value=46 Score=16.90 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+ .|+... ....|..|+...+
T Consensus 6 k~~~C~--~C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCR--ICLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECS--SSCCEESSHHHHHHHHGGGT
T ss_pred cCeeCC--CCCcccCCHHHHHHHHHHcC
Confidence 467787 587766 5678999987643
No 165
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.62 E-value=39 Score=17.49 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
.|+.|+ .|+... ....|..|....+.
T Consensus 8 k~~~C~--~C~k~f~~~~~l~~H~~~h~~ 34 (37)
T 2elo_A 8 RSYSCP--VCEKSFSEDRLIKSHIKTNHP 34 (37)
T ss_dssp CCCEET--TTTEECSSHHHHHHHHHHHCS
T ss_pred CCcCCC--CCCCccCCHHHHHHHHHHHcC
Confidence 567887 588766 45789999876543
No 166
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.10 E-value=28 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=21.0
Q ss_pred cceecCcCCCCCcceeeecCchhhHhhcCCCCC
Q 038900 42 VKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSP 74 (230)
Q Consensus 42 l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~ 74 (230)
+. +.|.|. ||...+.-. +..+++|.|-|
T Consensus 8 m~-~~C~n~--GC~~~f~~~--~n~~~~C~yHp 35 (75)
T 2yrt_A 8 MA-LLCYNR--GCGQRFDPE--TNSDDACTYHP 35 (75)
T ss_dssp CC-EECCST--TTCCEECTT--TCCTTTBCCCS
T ss_pred Cc-cccCCC--CCCCEecCC--CCCCCCeECCC
Confidence 44 789986 999987643 44667898876
No 167
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.92 E-value=73 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCcccC-hhhHHHHHhhhcCCCc
Q 038900 73 SPCSCPLSGCDFLGS-SSQLYQHFRAQHQNSS 103 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g~-~~~L~~H~~~~H~~~~ 103 (230)
.+..|| .|+-+.+ ...|..|+.-.+..-+
T Consensus 11 ~~~~CP--rCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 11 GRKICP--RCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SCCCCT--TTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred CceeCC--cccccccchHHHHhhhhhcCcchh
Confidence 356787 7988875 6899999998887644
No 168
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.89 E-value=46 Score=16.97 Aligned_cols=24 Identities=29% Similarity=0.783 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|+...
T Consensus 8 k~~~C~--~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 8 KPYKCP--QCSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CSEECS--SSSCEESSHHHHHHHHHHH
T ss_pred CCCCCC--CCCcccCCHHHHHHHHHHc
Confidence 467887 588776 457899998653
No 169
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.80 E-value=31 Score=22.15 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=16.5
Q ss_pred ccccccccc-cCCCCCCCCCCCCC
Q 038900 6 MVCTTCRSK-IKNDSCPFDRSPIA 28 (230)
Q Consensus 6 ~~C~~C~~~-l~~~~CP~C~~~~~ 28 (230)
..|..|..- |.. .||.|.++..
T Consensus 7 r~C~~CgvYTLk~-~CP~CG~~T~ 29 (60)
T 2apo_B 7 KKCPKCGLYTLKE-ICPKCGEKTV 29 (60)
T ss_dssp EECTTTCCEESSS-BCSSSCSBCB
T ss_pred eeCCCCCCEeccc-cCcCCCCcCC
Confidence 478999765 544 7999998764
No 170
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.44 E-value=47 Score=18.41 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|..+.|+... ....|..|+..
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~ 36 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRS 36 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHH
Confidence 56778655687765 45788889765
No 171
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.37 E-value=64 Score=16.35 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.++.|+ .|+... ....|..|....
T Consensus 8 ~~~~C~--~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elr_A 8 KTHLCD--MCGKKFKSKGTLKSHKLLH 32 (36)
T ss_dssp SSCBCT--TTCCBCSSHHHHHHHHHHH
T ss_pred CCeecC--cCCCCcCchHHHHHHHHHh
Confidence 467887 587766 457899998653
No 172
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=25.01 E-value=36 Score=26.75 Aligned_cols=46 Identities=17% Similarity=0.026 Sum_probs=21.5
Q ss_pred CCCCCCccchHHHHHHHhhcceecCcCCCCCcceeeecCchhhHhhc
Q 038900 23 DRSPIAYTRNRVIEKLLESVKSVSCKNAEYGCNEMLGYLEKNDHEKA 69 (230)
Q Consensus 23 C~~~~~~~r~~~~e~~~~~l~~v~C~n~~~GC~~~~~~~~~~~He~~ 69 (230)
|...+.+..-..=|+.-.-.. ..||.....|+|...+.++..|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p-~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRP-YSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------C-EECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCC-ccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 655555544455556666677 8999863349999999999999986
No 173
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.93 E-value=51 Score=16.89 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|+...
T Consensus 8 k~~~C~--~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCE--YCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECT--TTCCEESSHHHHHHHHHHH
T ss_pred CCEECC--CCCceeCCHHHHHHHHHHh
Confidence 467787 487766 457888998753
No 174
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=36 Score=22.19 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=19.5
Q ss_pred CccccccccccCCCCCCCCCCCCC
Q 038900 5 HMVCTTCRSKIKNDSCPFDRSPIA 28 (230)
Q Consensus 5 H~~C~~C~~~l~~~~CP~C~~~~~ 28 (230)
-.+|..|..++-..+|+.|.++|.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~ 26 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE 26 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC
T ss_pred CCcchHHHHhHhCCcCccccCEec
Confidence 368999999875558999999876
No 175
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.28 E-value=52 Score=18.10 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enf_A 11 KPYKCN--ECGKVFTQNSHLVRHRGIHT 36 (46)
T ss_dssp CSCBCS--SSCCBCSSHHHHHHHHTTTT
T ss_pred cCeECC--CCCcccCCHHHHHHHHHhhC
Confidence 567887 587765 4678999976543
No 176
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.27 E-value=64 Score=17.77 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+.....
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2eom_A 11 RGHRCS--DCGKFFLQASNFIQHRRIHTG 37 (46)
T ss_dssp SSCCCS--SSCCCCSSHHHHHHHHHHHSS
T ss_pred CCcCCC--CCCCeeCChHHHHHHHHHhCC
Confidence 567887 587766 45789999876443
No 177
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.21 E-value=66 Score=17.62 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+...|.
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 11 KPYECI--ECGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CSBCCS--SSCCCBSSHHHHHHHHTTTTT
T ss_pred CCEECC--ccCchhCChHHHHHHhHhhcC
Confidence 578887 487766 46889999884554
No 178
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.20 E-value=49 Score=16.99 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
.|+.|+ .|+... ....|..|...
T Consensus 8 k~~~C~--~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCS--LCEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECS--SSSCEESCHHHHHHHHHH
T ss_pred CCccCC--CCCchhCCHHHHHHHHHH
Confidence 567887 587766 45788899765
No 179
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.00 E-value=43 Score=17.59 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
.|+.|+ .|+... ....|..|....|.
T Consensus 8 k~~~C~--~C~k~f~~~~~L~~H~~~~H~ 34 (37)
T 2elm_A 8 HLYYCS--QCHYSSITKNCLKRHVIQKHS 34 (37)
T ss_dssp CEEECS--SSSCEEECHHHHHHHHHHHTC
T ss_pred cCeECC--CCCcccCCHHHHHHHHHHHcc
Confidence 467786 588776 56788999444554
No 180
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.99 E-value=19 Score=24.60 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=10.8
Q ss_pred hcCCCCCCCCCCCCCCcccCh
Q 038900 68 KACKHSPCSCPLSGCDFLGSS 88 (230)
Q Consensus 68 ~~C~~~~~~Cp~~~C~~~g~~ 88 (230)
+.|.-..++|+ .|+-..|+
T Consensus 45 kACGA~~yFC~--~C~~LiSk 63 (81)
T 2jrp_A 45 KACGAVDYFCQ--NGHGLISK 63 (81)
T ss_dssp EETTEEEECCT--TTTCCCCT
T ss_pred HhcCCcCeeec--cCCCEeec
Confidence 34544566776 56665543
No 181
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=71 Score=17.04 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 10 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2eos_A 10 KPYPCE--ICGTRFRHLQTLKSHLRIHT 35 (42)
T ss_dssp CCBCCS--SSCCCBSSHHHHHHHTTTTS
T ss_pred CCEECC--CCCCccCCHHHHHHHHHhcC
Confidence 578887 587766 4578999977533
No 182
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.39 E-value=75 Score=17.37 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq2_A 11 KPYQCN--ECGKAFSQTSKLARHQRVHT 36 (46)
T ss_dssp CSSSCC--SSCCCCSSHHHHHHHGGGGC
T ss_pred CCeECC--CCCcccCCHHHHHHHHHHcC
Confidence 567887 587766 4678999986533
No 183
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.20 E-value=84 Score=16.60 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|....
T Consensus 9 k~~~C~--~C~k~f~~~~~L~~H~~~H 33 (42)
T 2yte_A 9 KPYSCA--ECKETFSDNNRLVQHQKMH 33 (42)
T ss_dssp CSCBCT--TTCCBCSSHHHHHHHHHHT
T ss_pred CCeECC--CCCCccCCHHHHHHHHHHh
Confidence 567887 587766 457899998763
No 184
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}
Probab=22.73 E-value=17 Score=24.42 Aligned_cols=28 Identities=39% Similarity=0.840 Sum_probs=21.3
Q ss_pred cceecCcCCCCCcceeeecCchhhHhhcCCCCC
Q 038900 42 VKSVSCKNAEYGCNEMLGYLEKNDHEKACKHSP 74 (230)
Q Consensus 42 l~~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~ 74 (230)
.. ..|.|. ||...+.-. +.++++|.|-|
T Consensus 8 ~~-~~C~n~--GC~~~f~~~--~n~~~~C~yHp 35 (74)
T 2xcm_E 8 QP-QVCKNK--GCGQTFKER--DNHETACSHHP 35 (74)
T ss_dssp SC-EECCSB--TTCCEECST--TCCTTCEEEBC
T ss_pred CC-CcEECC--CcCCEecCC--CCCCCceEecC
Confidence 45 789986 999987643 66777888866
No 185
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.62 E-value=99 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=16.8
Q ss_pred CCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 75 CSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 75 ~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+.|+ .|+... ....|..|++..+.
T Consensus 63 ~~C~--~C~k~f~~~~~L~~H~~~H~~ 87 (95)
T 2ej4_A 63 EECP--REGKSFKAKYKLVNHIRVHTG 87 (95)
T ss_dssp TTCS--STTCCCSSHHHHHHHHHHHHT
T ss_pred cCCC--CCCcccCCHHHHHHHHHhcCC
Confidence 6776 477665 56789999886443
No 186
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.60 E-value=85 Score=17.11 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+ .|+... ....|..|+...+
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2epz_A 11 KPFDCI--DCGKAFSDHIGLNQHRRIHT 36 (46)
T ss_dssp CSBCCT--TTCCCBSSHHHHHHHHTTTT
T ss_pred CCeECC--CCCceeCCHHHHHHHHHHhC
Confidence 578887 587766 4578999987543
No 187
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=87 Score=17.13 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoh_A 11 KPYECK--ECRKTFIQIGHLNQHKRVHT 36 (46)
T ss_dssp CSCCCS--SSCCCCSSHHHHHHHHHHCS
T ss_pred CCcCCC--CcCchhCCHHHHHHHHHHhC
Confidence 578887 587765 4678999987643
No 188
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.51 E-value=97 Score=16.80 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+...+
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep1_A 11 KPYECS--DCGKSFIKKSQLHVHQRIHT 36 (46)
T ss_dssp CSSCCS--SSCCCCSSHHHHHHHHGGGS
T ss_pred CCcCCC--CCCchhCCHHHHHHHHHHhC
Confidence 578887 587765 5688999987643
No 189
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.22 E-value=64 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+...+
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq4_A 11 KLYNCK--ECGKSFSRAPCLLKHERLHS 36 (46)
T ss_dssp CCCCBT--TTTBCCSCHHHHHHHHHHCC
T ss_pred CCeECC--CCCCccCchHHHHHHHHhcC
Confidence 578887 587766 4678999987633
No 190
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.11 E-value=90 Score=16.95 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+...+
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytr_A 11 KPYKCN--ECGKAFSQTSKLARHQRIHT 36 (46)
T ss_dssp CTTCCT--TTCCCCSSHHHHHHHHTTTT
T ss_pred cCcCCC--CCCCccCCHHHHHHHHHhcC
Confidence 578887 487765 4678999987643
No 191
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.10 E-value=87 Score=17.02 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+ .|+... ....|..|+...+
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eov_A 11 KPYKCS--DCGKSFTWKSRLRIHQKCHT 36 (46)
T ss_dssp CSCBCS--SSCCBCSSHHHHHHHHHHHS
T ss_pred CCccCC--ccChhhCCHHHHHHHHHhcC
Confidence 578887 587766 4678999987544
No 192
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.08 E-value=83 Score=17.15 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+...+
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytn_A 11 KPYKCN--ECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp SSCBCT--TTCCBCSSHHHHHHHGGGTS
T ss_pred cCeECC--CCCCeeCCHHHHHHHhhhcC
Confidence 567887 487766 4678999976643
No 193
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.56 E-value=19 Score=17.09 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=13.4
Q ss_pred CCCCCCCCCCcccC-hhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLGS-SSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g~-~~~L~~H~~~ 97 (230)
|+.|+ .|+.... ...|..|...
T Consensus 2 p~~C~--~C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 2 PYVCE--RCGKRFVQSSQLANHIRH 24 (26)
Confidence 56676 4766553 4677777653
No 194
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.87 E-value=76 Score=17.33 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq1_A 11 KPYKCN--ECGKAFRAHSNLTTHQVIHT 36 (46)
T ss_dssp CCCCCT--TTTCCCSSHHHHHHHHTTTC
T ss_pred CCeECC--cCChhhCCHHHHHHHHHHhC
Confidence 578887 587766 4678999987533
No 195
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=21.80 E-value=93 Score=16.98 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+.....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ely_A 11 KPFKCV--ECGKGFSRRSALNVHHKLHTG 37 (46)
T ss_dssp CSBCCS--SSCCCBSSTTHHHHHHHHHSC
T ss_pred CCcccC--ccCcccCCHHHHHHHHHHcCC
Confidence 578887 487765 45789999876443
No 196
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.73 E-value=31 Score=16.59 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
+|+.|+ .|+... ....|..|...
T Consensus 2 k~~~C~--~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 2 APYRCP--LCRAGCPSLASMQAHMRG 25 (27)
T ss_dssp CTEEET--TTTEEESCHHHHHHHHTT
T ss_pred cCcCCC--CCCcccCCHHHHHHHHHh
Confidence 356776 577665 45678888753
No 197
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=87 Score=17.11 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
+|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2elz_A 11 KPYKCE--DCGKGYNRRLNLDMHQRVHM 36 (46)
T ss_dssp SSCBCS--SSCCBCSSHHHHHHHGGGGG
T ss_pred CCeeCc--ccCchhCCHHHHHHHHHhcC
Confidence 567886 587766 4678999987544
No 198
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.60 E-value=95 Score=16.89 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|+...
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H 35 (46)
T 2em0_A 11 KTWKCR--ECDMCFSQASSLRLHQNVH 35 (46)
T ss_dssp CCCCCS--SSCCCCSSHHHHHHHGGGG
T ss_pred cCeECC--CCCcccCCHHHHHHHHHHc
Confidence 578887 587765 467899998763
No 199
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.54 E-value=93 Score=16.93 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2yti_A 11 KPYKCN--ECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp CTTCCS--SSCCCCSSHHHHHHHHTTTS
T ss_pred cCeECC--CCCcccCChhHHHHHhHhcC
Confidence 578887 487766 4578999976533
No 200
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.43 E-value=70 Score=17.02 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+...+.
T Consensus 9 k~~~C~--~C~k~f~~~~~L~~H~~~H~~ 35 (42)
T 2el5_A 9 NPYECS--ECGKAFNRKDQLISHQRTHAG 35 (42)
T ss_dssp CSEECS--SSCCEESSHHHHHHHHGGGCC
T ss_pred CCccCC--CcChhhCCHHHHHHHHHhcCC
Confidence 567787 587766 45788999876443
No 201
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.27 E-value=28 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=11.0
Q ss_pred CCCCccccccccc
Q 038900 2 ENGHMVCTTCRSK 14 (230)
Q Consensus 2 ~~GH~~C~~C~~~ 14 (230)
.||.+||+.|...
T Consensus 32 ~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 32 SCGGVFCQEHSSN 44 (73)
T ss_dssp TTCCEECGGGSCE
T ss_pred CCCEEEcccccCC
Confidence 3799999999875
No 202
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25 E-value=81 Score=17.25 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yth_A 11 KPFQCE--ECGKRFTQNSHLHSHQRVHT 36 (46)
T ss_dssp SSBCCS--SSCCCBSSHHHHHHHGGGGT
T ss_pred cCCCCC--CCCcccCCHHHHHHHHHhcC
Confidence 578887 587766 4678999977633
No 203
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.17 E-value=1e+02 Score=16.68 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|....+
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoq_A 11 KPFKCD--ICGKSFCGRSRLNRHSMVHT 36 (46)
T ss_dssp CSCCCS--SSCCCCSSHHHHHHHHHHTT
T ss_pred CCcCCC--cCCchhCCHHHHHHHHHHcC
Confidence 578887 487765 5688999977643
No 204
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=21.10 E-value=43 Score=18.50 Aligned_cols=12 Identities=50% Similarity=1.079 Sum_probs=9.9
Q ss_pred CCCCCCCCCccc
Q 038900 75 CSCPLSGCDFLG 86 (230)
Q Consensus 75 ~~Cp~~~C~~~g 86 (230)
..||.+||+=.|
T Consensus 2 ~~CPtpGC~g~G 13 (31)
T 2jx1_A 2 LKCPTPGCDGSG 13 (31)
T ss_dssp CSCSCTTCCSSC
T ss_pred CcCCCCCccccc
Confidence 479999998776
No 205
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=47 Score=18.40 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
+|+.|+ .|+... ....|..|+...
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eon_A 11 KPYKCQ--VCGKAFRVSSHLVQHHSVH 35 (46)
T ss_dssp CSCBCS--SSCCBCSSHHHHHHHTTTT
T ss_pred cccCCC--CCCcccCcHHHHHHHHHhc
Confidence 577887 487766 457899998653
No 206
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=80 Score=17.27 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
.|+.|+ .|+... ....|..|+.....
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2en9_A 11 KLFKCN--ECKKTFTQSSSLTVHQRIHTG 37 (46)
T ss_dssp CCCBCT--TTCCBCSSHHHHHHHHHHHTS
T ss_pred CCEECC--ccCcccCCHHHHHHHHHHcCC
Confidence 567887 487766 46789999876443
No 207
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.81 E-value=16 Score=26.06 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.4
Q ss_pred CCCCccccccccccCC
Q 038900 2 ENGHMVCTTCRSKIKN 17 (230)
Q Consensus 2 ~~GH~~C~~C~~~l~~ 17 (230)
+|||.|+..|+.++..
T Consensus 72 ~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLK 87 (106)
T ss_dssp TTSCEEEHHHHHHHHT
T ss_pred ccCcEECHHHHHHHHH
Confidence 5899999999988765
No 208
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.75 E-value=30 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=11.2
Q ss_pred CCCCccccccccc
Q 038900 2 ENGHMVCTTCRSK 14 (230)
Q Consensus 2 ~~GH~~C~~C~~~ 14 (230)
.||.+||++|...
T Consensus 42 ~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 42 NCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCEECTGGGCC
T ss_pred CCCcEEChHHhCC
Confidence 3799999999876
No 209
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=67 Score=17.71 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+.....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ytm_A 11 KPYKCM--ECGKAFGDNSSCTQHQRLHTG 37 (46)
T ss_dssp CSSSBT--TTTBCCSSHHHHHHHHHHHHS
T ss_pred CCcCCC--CCCchhCCHHHHHHHHHHcCC
Confidence 577887 587766 45789999876443
No 210
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.53 E-value=1.1e+02 Score=16.43 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+|+.|+ .|+... ....|..|+.....
T Consensus 9 k~~~C~--~C~k~f~~~~~L~~H~~~H~~ 35 (43)
T 2yrm_A 9 GAFFCN--ECDCRFSEEASLKRHTLQTHS 35 (43)
T ss_dssp CCBCCS--SSCCCBSSHHHHHHHHHHHTC
T ss_pred CCEECC--CCCCeeCChHHHHHHHHhhCC
Confidence 567887 487765 46789999876443
No 211
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.49 E-value=97 Score=16.53 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhh
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQ 98 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~ 98 (230)
.|+.|+ .|+... ....|..|+...
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H 35 (44)
T 2en7_A 11 KPYVCN--ECGKAFRSKSYLIIHTRTH 35 (44)
T ss_dssp SSSCCT--TTCCCCSSHHHHHHHHTTT
T ss_pred cCeECC--CCCCccCCHHHHHHHhhhc
Confidence 578887 487765 467899998653
No 212
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.48 E-value=53 Score=16.96 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCcccCh--hhHHHHHhh
Q 038900 73 SPCSCPLSGCDFLGSS--SQLYQHFRA 97 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g~~--~~L~~H~~~ 97 (230)
+|+.|+ .|+..... ..|..|...
T Consensus 8 k~~~C~--~C~k~f~~~~~~L~~H~~~ 32 (37)
T 2elp_A 8 RAMKCP--YCDFYFMKNGSDLQRHIWA 32 (37)
T ss_dssp CCEECS--SSSCEECSSCHHHHHHHHH
T ss_pred CCeECC--CCChhhccCHHHHHHHHHh
Confidence 467787 58776644 588899765
No 213
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.38 E-value=65 Score=17.13 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 10 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2ytb_A 10 KPYRCD--QCGKAFSQKGSLIVHIRVHT 35 (42)
T ss_dssp CSBCCT--TTTCCBSSHHHHHTTGGGTS
T ss_pred CCeeCC--CccchhCCHHHHHHHHHHhC
Confidence 578887 587766 4578899976533
No 214
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.31 E-value=31 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=10.6
Q ss_pred CCccccccccccCCCCCCCCCCCC
Q 038900 4 GHMVCTTCRSKIKNDSCPFDRSPI 27 (230)
Q Consensus 4 GH~~C~~C~~~l~~~~CP~C~~~~ 27 (230)
|..+|..|..++-..+|..|.++|
T Consensus 106 g~~yC~~~y~~~f~~kC~~C~~~I 129 (182)
T 2jtn_A 106 ESVYCKDDFFKRFGTKCAACQLGI 129 (182)
T ss_dssp TEEECHHHHHHTTSCCCTTTCCCC
T ss_pred CEeeecCccccccccccccCCCcc
Confidence 334444444443223455555544
No 215
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.31 E-value=35 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=8.5
Q ss_pred CCcccc-ccccccCCCCCCCCC
Q 038900 4 GHMVCT-TCRSKIKNDSCPFDR 24 (230)
Q Consensus 4 GH~~C~-~C~~~l~~~~CP~C~ 24 (230)
|.++|. .|..++-.++|..|.
T Consensus 47 g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 47 GKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp TEEEETTTHHHHHSSCCCSSCC
T ss_pred CeEeeCHHHHHHHhCccCCCcC
Confidence 344444 344443222444444
No 216
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=94 Score=16.92 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccc-ChhhHHHHHhhhc
Q 038900 73 SPCSCPLSGCDFLG-SSSQLYQHFRAQH 99 (230)
Q Consensus 73 ~~~~Cp~~~C~~~g-~~~~L~~H~~~~H 99 (230)
.|+.|+ .|+... ....|..|+....
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emg_A 11 NPFICS--ECGKVFTHKTNLIIHQKIHT 36 (46)
T ss_dssp CSCBCT--TTCCBCSSHHHHHHHHTTTS
T ss_pred CCEECC--ccCcccCCHHHHHHHHHHhC
Confidence 567887 587766 4678999987543
No 217
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.25 E-value=79 Score=19.49 Aligned_cols=49 Identities=27% Similarity=0.474 Sum_probs=32.7
Q ss_pred ecCcCCCCCcceeeecC-chhhHhhc-CCCCCCCCCCCCCCccc-ChhhHHHHHhhhcC
Q 038900 45 VSCKNAEYGCNEMLGYL-EKNDHEKA-CKHSPCSCPLSGCDFLG-SSSQLYQHFRAQHQ 100 (230)
Q Consensus 45 v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~~C~~~g-~~~~L~~H~~~~H~ 100 (230)
+.|. -|...+... .|..|++. =.-+|+.|+ .|+... ....|..|++. |.
T Consensus 5 y~C~----~C~k~F~~~~~L~~H~~~Ht~ekp~~C~--~C~k~F~~~~~L~~H~~~-Ht 56 (60)
T 4gzn_C 5 FFCN----FCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKV-HQ 56 (60)
T ss_dssp EECT----TTCCEESSHHHHHHHHHHHHTCCCEECT--TTCCEESSHHHHHHHGGG-GS
T ss_pred ccCC----CCCCEeCCHHHHHHHHHHhCCCcCeECC--CCCCCcCCHHHHHHHhCc-cC
Confidence 4555 477766544 56777763 234788997 588776 46899999865 54
No 218
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.20 E-value=36 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=23.5
Q ss_pred ccccccccccCC---CCCCCCCCCCCccchHHHHHHHhhcceecCc
Q 038900 6 MVCTTCRSKIKN---DSCPFDRSPIAYTRNRVIEKLLESVKSVSCK 48 (230)
Q Consensus 6 ~~C~~C~~~l~~---~~CP~C~~~~~~~r~~~~e~~~~~l~~v~C~ 48 (230)
..|-.|...+.. -.||.|+..+ +..-+..|-... -.||
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~F----C~dCD~fiHe~L-h~CP 56 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVF----CVDCDVFVHDSL-HSCP 56 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCB----CHHHHHTTTTTS-CSSS
T ss_pred CcccccCcccCCCccEECCccCcCc----ccchhHHHHhhc-cCCc
Confidence 468888887632 2599998753 444555554444 5666
No 219
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.37 E-value=22 Score=17.27 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=13.9
Q ss_pred CCCCCCCCCCccc-ChhhHHHHHhh
Q 038900 74 PCSCPLSGCDFLG-SSSQLYQHFRA 97 (230)
Q Consensus 74 ~~~Cp~~~C~~~g-~~~~L~~H~~~ 97 (230)
|+.|+ .|+... ....|..|...
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~ 24 (29)
T 2lvt_A 2 PCQCV--MCGKAFTQASSLIAHVRQ 24 (29)
Confidence 56676 476654 34677788654
Done!