BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038901
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV 73
P N + +VL+G+TG GKSATGNSILGR+ F + + +T CE +++ K+ ++V V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-V 82
Query: 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
+DTPG+FD + KEI++C+ + G HA
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
+ ++V +IDTP +F E + KE+ +C ++ G H
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID 75
S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
TP +F E + KE+ +C ++ G H
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPH 90
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
+ ++V +IDTP F E + KE+ +C ++ G H
Sbjct: 69 GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPH 107
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIH 105
+F E + KE+ +C ++ G H
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPH 87
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG+R F + G++ VT C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80 FDLSAGSEFVG-KEIVKCLGMAKDGIHA 106
F G +E C ++ G HA
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHA 108
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMK 61
E++I+ K TV++LG+ G GKS+T NS++G + + S + G+ +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 62 TTVLKDGQVVNVIDTPGLFD 81
T G +N+IDTPGL +
Sbjct: 80 TM---GGFTINIIDTPGLVE 96
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMK 61
E++I+ K TV++LG+ G GKS+T NS++G + + S + G+ +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 62 TTVLKDGQVVNVIDTPGLFD 81
T G +N+IDTPGL +
Sbjct: 80 TM---GGFTINIIDTPGLVE 96
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMK 61
E++I+ K TV++LG+ G GKS+T NS++G + + S + G+ +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 62 TTVLKDGQVVNVIDTPGLFD 81
T G +N+IDTPGL +
Sbjct: 80 TM---GGFTINIIDTPGLVE 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMK 61
E++I+ K TV++LG+ G GKS+T NS++G + + S + G+ +
Sbjct: 19 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 78
Query: 62 TTVLKDGQVVNVIDTPGLFD 81
T G +N+IDTPGL +
Sbjct: 79 TM---GGFTINIIDTPGLVE 95
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G R S S + + + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G R S S + + + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR A A TT ++ + DG +++IDT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 68 ASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR A A TT ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR A A TT ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
R +V+ GR GKS+ N+++G+ S +G TT K+ L V ++DTPGL
Sbjct: 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93
Query: 80 FDL 82
D+
Sbjct: 94 DDV 96
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 11 KPTS-PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQ 69
KP P G + L GR+ GKS+ NS++ R+ ++ G T T ++ D
Sbjct: 14 KPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIINDE- 70
Query: 70 VVNVIDTPGL 79
++ +D PG
Sbjct: 71 -LHFVDVPGY 79
>pdb|3U4G|A Chain A, The Structure Of Cobt From Pyrococcus Horikoshii
Length = 337
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD- 81
+++G + G + T +IL ++A S+ E+K V+K+G I+ GL D
Sbjct: 138 IVIGESTPGGTTTAQAILWALGYEAKTSSASPENPQELKEKVIKEGFKRVGIEKGGLKDK 197
Query: 82 -LSAGSEFVGKEIVKCLGMA 100
L A EF I LG++
Sbjct: 198 PLEALKEFGDPXIATVLGLS 217
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 25/92 (27%)
Query: 25 LGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84
LG G + T N++L R+ G+T + T+ + VN+IDTPG D A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--------RGITIQTGI-TSFQWENTKVNIIDTPGHMDFLA 82
Query: 85 GSEFVGKEIVKCLGM---------AKDGIHAK 107
E+ + L + AKDG+ A+
Sbjct: 83 -------EVYRSLSVLDGAILLISAKDGVQAQ 107
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRRAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 27 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRRAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 26 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
TV+++GR GKS N ++ ++ KA T ++ TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 81 D 81
D
Sbjct: 61 D 61
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
V ++GR GKS N+IL + +A TT + V DG+ +DT GL
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRRAFKASAGSSGVTTTCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T E ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 91 TIVDTPGFGD 100
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 38 SILGRRAFKA-----SAGSSGVT-TTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LG R + A ++ VT EM +G+++N++DTPGL D
Sbjct: 25 NVLGERLYNHIVAINPAAAAKVTGMLLEMD-----NGEILNLLDTPGLLD 69
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 17/80 (21%)
Query: 20 RTVVLLGRTGNGKSATGNSIL---GR-------------RAFKASAGSSGVTTTCEMKTT 63
R +V+ GK+ T IL GR F G+T T + T
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 64 VLKDGQVVNVIDTPGLFDLS 83
KD ++ N+IDTPG D +
Sbjct: 73 FWKDHRI-NIIDTPGHVDFT 91
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
+TV L+G GK+ N++ G R + GVT + ++ + + V+D PG+
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFL-VVDLPGI 60
Query: 80 FDLSAGS 86
+ L+A S
Sbjct: 61 YSLTAHS 67
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----------------SGVTT 56
T+P N R + + GK+ T +L G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSE 87
T TT K D VNVIDTPG D + E
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVE 103
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRRAFKASAGSSGVTTTCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T E ++K+G V +
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 68 TIVDTPGFGD 77
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51
+TV L+GR+G+GKS N L R + +GS
Sbjct: 370 KTVALVGRSGSGKSTIAN--LFTRFYDVDSGS 399
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 53 GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83
G+T T + T KD ++ N+IDTPG D +
Sbjct: 62 GITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRRAFKASAGSSGVTTTCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T E ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 63 TIVDTPGFGD 72
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 53 GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83
G+T T + T KD ++ N+IDTPG D +
Sbjct: 62 GITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 53 GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83
G+T T + T KD ++ N+IDTPG D +
Sbjct: 62 GITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 53 GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83
G+T T + T KD ++ N+IDTPG D +
Sbjct: 62 GITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG--SSGVTTTCEM------KTTV------- 64
RTV L+G G+GK+ ++L + K G G TTT +TTV
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 65 LKDGQVVNVIDTPGLFDL 82
L G V ++D PG D
Sbjct: 70 LFRGHRVFLLDAPGYGDF 87
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G GKS N++ G + G+ T + + +G+ V+D PG++
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66
Query: 82 LSAGS--EFVGKEIV 94
L+A S E + ++ +
Sbjct: 67 LTANSIDEIIARDYI 81
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSS-GVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
V+++G GKS N + G+RA +S G+ G+T + + L++G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITKGIQWFS--LENG--VKILDTPGIL 155
Query: 81 DLSAGSE 87
+ SE
Sbjct: 156 YKNIFSE 162
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
R ++ G N + A+G + L AF E+ +LK+G VN +D G+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGH---------LEIVEVLLKNGADVNAVDHAGM 81
Query: 80 FDLSAGSEFVGKEIVKCL 97
L + F EIV+ L
Sbjct: 82 TPLRLAALFGHLEIVEVL 99
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 19 ERTVVLLGRTGNGKSATGNSIL-----GRRAFKASAGSSGVTTTCEMKTTVLKDGQV--- 70
E T++++G +G GKS NS+ R +A T E T +++ V
Sbjct: 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 71 VNVIDTPGLFD 81
+ V+DTPG D
Sbjct: 97 LTVVDTPGYGD 107
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G GKS N++ G + G+ T + + +G+ V+D PG++
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 63
Query: 82 LSAGS--EFVGKEIV 94
L+A S E + ++ +
Sbjct: 64 LTANSIDEIIARDYI 78
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G GKS N++ G + G+ T + + +G+ V+D PG++
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 82 LSAGS--EFVGKEIV 94
L+A S E + ++ +
Sbjct: 63 LTANSIDEIIARDYI 77
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G GKS N++ G + G+ T + + +G+ V+D PG++
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 82 LSAGS--EFVGKEIV 94
L+A S E + ++ +
Sbjct: 63 LTANSIDEIIARDYI 77
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV-----VN 72
G + V ++G T GKS + + R + S + V TT T L + +
Sbjct: 159 GGKDVYVVGCTNVGKS----TFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Query: 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102
+ DTPG+ + + +VGK+ +K + K+
Sbjct: 215 LYDTPGIINHHQXAHYVGKQSLKLITPTKE 244
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-TMERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-TMERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-TMERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-TMERHPYKHPNIPNVVFWDLPGI 130
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV 70
KP + R + G++G GKS+ N++LG + + S V+ + TT +
Sbjct: 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF 266
Query: 71 V---NVIDTPGL 79
+VID+PG+
Sbjct: 267 PHGGDVIDSPGV 278
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL-KDGQVVNVIDTPGLF 80
V L G GK++ N++ G + + A GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQY--VANWPGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82
+++G GKS N L ++ + G+TT+ + +K G+ + ++DTPG+
Sbjct: 124 LIIGIPNVGKSTLINR-LAKKNIAKTGDRPGITTSQQW----VKVGKELELLDTPGILWP 178
Query: 83 SAGSEFVGKEIVKCLGMAKDGI 104
E VG + G KD I
Sbjct: 179 KFEDELVGLRLA-VTGAIKDSI 199
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL-KDGQVVNVIDTPGLF 80
V L G GK++ N++ G + + A GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQY--VANWPGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 29 GNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88
NG A GR +A E+ +L++G VN +DT G L +
Sbjct: 23 ANGADANAYDHYGRTPLHMAAA----VGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 89 VGKEIVKCL 97
EIV+ L
Sbjct: 79 GHLEIVEVL 87
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL-KDGQVVNVIDTPGLF 80
V L G GK++ N++ G + + A GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQY--VANWPGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed
By Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed
By Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97
E+ +LK+G VN DT G L + F EIV+ L
Sbjct: 60 LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 67 DGQVVNVIDTPGLFDLSAGSE 87
+G VN+IDTPG DL+ E
Sbjct: 73 EGHRVNIIDTPGHVDLTVEVE 93
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 67 DGQVVNVIDTPGLFDLSAGSE 87
+G VN+IDTPG DL+ E
Sbjct: 73 EGHRVNIIDTPGHVDLTVEVE 93
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPASGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44
SN + ++L+GR+G+GKS+ + I +
Sbjct: 3 SNNRKKLLLMGRSGSGKSSMRSIIFSNYS 31
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV-IDTPGL 79
+ ++GR GKS N +LG+ K S S TT + +G + +DTPGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ---KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVV 71
P SP V ++G +GK+ + + R+ A+ + G+T L G+ +
Sbjct: 2 PRSP-----VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKI 54
Query: 72 NVIDTPGLFDLSA----GSEFVGKEIVKCLGMAKDGI 104
+DTPG SA G++ +IV + A DG+
Sbjct: 55 TFLDTPGHAAFSAMRARGTQVT--DIVILVVAADDGV 89
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV-IDTPGL 79
+ ++GR GKS N +LG+ K S S TT + +G + +DTPGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ---KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 17 NGERTVVLLGRTGNGKSATGNSILGR 42
G +T+VL+G +G G+S N++L +
Sbjct: 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,399,593
Number of Sequences: 62578
Number of extensions: 125303
Number of successful extensions: 352
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 85
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)