BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038901
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
Length = 353
Score = 113 bits (282), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 64/85 (75%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+GRTGNGKSATGNSI+ + FK+ SSGVT C V +G ++NVIDTPGLFD
Sbjct: 45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
LS +EF+GKEIVKCL +A G+HA
Sbjct: 105 LSVSAEFIGKEIVKCLTLADGGLHA 129
>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana
GN=PP2A3 PE=4 SV=1
Length = 463
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 62/87 (71%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG + FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
D + + EI+ CL MA++GIHA
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHA 92
>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1
Length = 329
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI 74
P N + +VL+G+TG GKSATGNSILGR+ F + + +T CE +++ K+ ++V V+
Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
DTPG+FD + KEI++C+ + G HA
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 116
>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2
SV=1
Length = 310
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILGR+AF + + +T CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
KEI +C+ + G HA
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHA 116
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILG + F + + +T CE + + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
+EI + + + G HA
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHA 116
>sp|Q9UG22|GIMA2_HUMAN GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=1 SV=2
Length = 337
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
+ ++V +IDTP +F E + KE+ +C ++ G H
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107
>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1
Length = 307
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG GKSATGNSILG+ F++ + VT TC++KT +G+ V V+DTP +F+
Sbjct: 30 IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTW-NGRKVLVVDTPSIFE 88
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIH 105
A ++ + K I C ++ G H
Sbjct: 89 SQADTQELYKNIGDCYLLSAPGPH 112
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR+AF++ + VTTT + K T +G+ + VIDTP +F
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
E K+I C +A G HA
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHA 187
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+G+TG+GKSAT N+ILG F + + VT C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
+ KEI +C+ + G HA
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHA 94
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
E ++LLG+ +GKSATGN+ILG+ FK+ V C+ ++ VL++ +VV VIDTP
Sbjct: 10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPD 68
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
LF A +E + I CL ++ +HA
Sbjct: 69 LFSSIACAEDKQRNIQHCLELSAPSLHA 96
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG--- 78
+VL+GR+G GKSATGNSILG F + + VT T + DGQ V V+DTP
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDG 103
+ D+ + +E+ +CL + G
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKG 524
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT 62
ER + +P E TV+L+G+ G GKSA GNSILGR+AF+ VT + ++
Sbjct: 231 ERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSES 290
Query: 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98
+ + V++ID P + L V K I C G
Sbjct: 291 RSWRKKK-VSIIDAPDISSLKNIDSEVRKHI--CTG 323
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK 66
+G++K ++ R ++LLG+ G GKSATGN+ILG+ F++ VT C+ ++ ++
Sbjct: 37 EGNFKQNQGTSTLR-LLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQSESVSVR 95
Query: 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102
QV+ VIDTP LF + SE + + +CL + D
Sbjct: 96 GKQVI-VIDTPDLFSSLSCSEVRQQNLKQCLELLAD 130
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLGR+G GKSATGN+ILGR AF + + VT++ + L D Q V V+DTP F
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535
Query: 82 LSAGSE----FVGKEIVKCLGMAKDGI 104
+ G+E + +EI CL + ++G+
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGM 562
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI 74
P E V+L+G+ G GKSA GNSILG++ FK T + + G+ V +I
Sbjct: 280 PDMPELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLII 339
Query: 75 DTP 77
D+P
Sbjct: 340 DSP 342
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+GRTG GKSATGNSILG++ F + G+ VT +C + + + Q V V+DTP +F
Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIFS 64
Query: 82 LSAGSEFVG-KEIVKCLGMAKDGIHA 106
G E +C ++ G HA
Sbjct: 65 SEIPRTDPGCVETARCFVLSAPGPHA 90
>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1
Length = 306
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV 73
S R ++L+GRTG GKSATGNSILG+R F + G++ VT C + D V V
Sbjct: 22 SRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEV 80
Query: 74 IDTPGLFDLSAGSEFVG-KEIVKCLGMAKDGIHA 106
+DTP +F G +E C ++ G HA
Sbjct: 81 VDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHA 114
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR F++ + VT T + ++ G+ + VIDTP +
Sbjct: 43 LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWA-GKELEVIDTPNILS 101
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
E V I + + ++ G HA
Sbjct: 102 PQVSPE-VADAICQAIVLSAPGPHA 125
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR+ F++ + VT + + L +G+ + VIDTP +
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
E K+I C +A G HA
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHA 186
>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1
Length = 308
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ VT T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIH 105
A ++ + K+I C + G H
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPH 111
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLG+ G GKSATGN+ILG+ F++ VT C+ ++ ++ QV+ VIDTP LF
Sbjct: 51 LLLLGKQGAGKSATGNTILGKAVFESRFSHHMVTKRCQSESVSVRGKQVI-VIDTPDLFS 109
Query: 82 LSAGSEFVGKEIVKCLGMAKD 102
E + + +CL + D
Sbjct: 110 SLGCPEVQQQNLRQCLDLLAD 130
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLGR+G GKSATGN+ILGR AF + + VT+ + L D Q + V+DTP L
Sbjct: 477 IILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSLNQ 535
Query: 82 LSAGSEF----VGKEIVKCL 97
+S G+E + KEI +CL
Sbjct: 536 MS-GTEKNPAQLKKEIKQCL 554
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQ 69
W +P E V+L+G+ G GKSA GNSILG++ FK T + L + +
Sbjct: 277 WDRDTP---ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSRLWNQK 333
Query: 70 VVNVIDTP 77
+ID+P
Sbjct: 334 KFLIIDSP 341
>sp|Q99MI6|GIMA3_MOUSE GTPase IMAP family member 3 OS=Mus musculus GN=Gimap3 PE=1 SV=2
Length = 301
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNS+L R AF++ VT T + +T +G+ + V+DTP +F+
Sbjct: 25 ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 83
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIH 105
A ++ + K+I C + G H
Sbjct: 84 SKAQNQDMDKDIGDCYLLCAPGPH 107
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDT 76
+G ++L+G++G GKSATGNSIL R AF++ VT T + + +G+ V+DT
Sbjct: 42 SGLLRILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTW-EGRSFLVVDT 100
Query: 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
P +F+ ++ + K+I C M G H
Sbjct: 101 PPIFESKIQNQDMDKDIGNCYLMCAPGPH 129
>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis
thaliana GN=At5g47260 PE=3 SV=2
Length = 948
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVN 72
TS S+ +T+ L+G TG+G++AT N+I G++ ++ ++ VT C+ D + N
Sbjct: 875 TSESHPIQTIDLVGTTGSGETATANNIQGKKVVQSGTHATVVTMECQTYKVFTPDCPINN 934
Query: 73 VIDTPG 78
+IDTPG
Sbjct: 935 MIDTPG 940
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
++L+G++G+GKSATGNSILGRR F++ + VT + +G+ + VIDTP +
Sbjct: 96 LILVGKSGSGKSATGNSILGRRVFESKLSARPVTQAFQQGCRAW-EGRELQVIDTPDIL 153
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
+++LG+TG GKSAT NSI G+ + A G E+ TV G V IDTPG
Sbjct: 169 ILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTV--SGVKVTFIDTPGFHP 226
Query: 82 LSAGSEFVGKEIV 94
LS+ S ++I+
Sbjct: 227 LSSSSTRKNRKIL 239
>sp|Q8Y7F0|RSGA1_LISMO Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=rsgA1 PE=3 SV=1
Length = 346
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 2 GERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTT 57
G ++ D KP S T++LLG +G GKS+ NS+ G K + S G TT
Sbjct: 172 GFEALESDLKPNS------TLILLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92
+ +L +G + VIDTPG+ + G G E
Sbjct: 226 THREMHLLSNGWI--VIDTPGMREFGVGFNQAGLE 258
>sp|Q92C22|RSGA1_LISIN Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=rsgA1 PE=3 SV=1
Length = 346
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 2 GERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTT 57
G ++ D KP S T+VLLG +G GKS+ NS+ G K S S G TT
Sbjct: 172 GFEALEADLKPNS------TLVLLGSSGVGKSSFINSLAGADLMKTSEIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92
+ +L +G + +IDTPG+ + G G E
Sbjct: 226 THREMHLLANGWI--IIDTPGMREFGIGLNQAGLE 258
>sp|Q71ZZ0|RSGA2_LISMF Putative ribosome biogenesis GTPase RsgA 2 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=rsgA2 PE=3
SV=1
Length = 346
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 2 GERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTT 57
G ++ D KP S T+VLLG +G GKS+ NS+ G K + S G TT
Sbjct: 172 GFEALERDLKPNS------TLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92
+ +L +G + VIDTPG+ + G G E
Sbjct: 226 THREMHLLTNGWI--VIDTPGMREFGVGFNQAGLE 258
>sp|P0DJR0|GIMD1_HUMAN GTPase IMAP family member GIMD1 OS=Homo sapiens GN=GIMD1 PE=2 SV=1
Length = 217
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV-------- 64
T P+ + L G T +GKS+ GN +LG F +S VTT C + +
Sbjct: 2 TDPNKMIINLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRR 61
Query: 65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG--MAKDGIH 105
L+ V V+DTPG ++V +E+ + L + G+H
Sbjct: 62 GGLEVALQVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLH 106
>sp|G3MZQ6|GIMD1_BOVIN GTPase IMAP family member GIMD1 OS=Bos taurus GN=GIMD1 PE=3 SV=1
Length = 216
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT------TTCEMKTTVLKDGQ----VV 71
+ L G T +GKS+ GN ILG F +S VT +C ++ + + GQ V
Sbjct: 10 LALFGMTQSGKSSAGNIILGSTDFHSSFAPCSVTRDCSLGRSCHFRSFMRRGGQEVTLQV 69
Query: 72 NVIDTPGLFDLSAGSEFVGKEIVKCLG--MAKDGIH 105
V+DTPG + V +E+ + L ++G+H
Sbjct: 70 QVLDTPGYPHSRLSKKHVRQEVREALAHHFGQEGLH 105
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
TV+++G+ G GKS+T NS++G +A S S G+ T +T + G +N+IDTPGL
Sbjct: 40 TVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRT---RSGFTLNIIDTPGL 96
Query: 80 FD 81
+
Sbjct: 97 IE 98
>sp|D2GU20|ERAL1_AILME GTPase Era, mitochondrial OS=Ailuropoda melanoleuca GN=ERAL1 PE=3
SV=1
Length = 437
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 11 KPTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKDG 68
+P P N VVLLG GKS N +LGR+ F S TT C+ + K+
Sbjct: 104 RPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVH--TTRCQALGVITEKEA 161
Query: 69 QVVNVIDTPGL 79
QV+ ++DTPGL
Sbjct: 162 QVI-LLDTPGL 171
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
E V+LLGRTG GKS+T N++ G SS T + + +G +N+IDTPG
Sbjct: 151 ECNVLLLGRTGVGKSSTLNTVFG---IDIPVHSSESCTQDPFTYSRVVNGFKLNIIDTPG 207
Query: 79 LFD 81
D
Sbjct: 208 FLD 210
>sp|Q87B73|RSGA_XYLFT Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=rsgA PE=3 SV=1
Length = 341
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RTV LLG +G GKS N++LG + K S G TT L G +ID
Sbjct: 204 RTVALLGSSGAGKSTLTNTLLGEQRMKVGEVRQRDSRGRHTTTHRALLPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSEFVGKE 92
TPG+ +L +F G+E
Sbjct: 262 TPGMREL----KFTGEE 274
>sp|B2I7R5|RSGA_XYLF2 Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain M23) GN=rsgA PE=3 SV=1
Length = 332
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RTV LLG +G GKS N++LG + K S G TT L G +ID
Sbjct: 195 RTVALLGSSGAGKSTLTNTLLGEQRMKVGEVRQRDSRGRHTTTHRALLPLPSGAC--LID 252
Query: 76 TPGLFDLSAGSEFVGKE 92
TPG+ +L +F G+E
Sbjct: 253 TPGMREL----KFTGEE 265
>sp|B0U466|RSGA_XYLFM Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain M12) GN=rsgA PE=3 SV=1
Length = 332
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RTV LLG +G GKS N++LG + K S G TT L G +ID
Sbjct: 195 RTVALLGSSGAGKSTLTNTLLGEQRMKVGEVRQRDSRGRHTTTHRALLPLPSGAC--LID 252
Query: 76 TPGLFDLSAGSEFVGKE 92
TPG+ +L +F G+E
Sbjct: 253 TPGMREL----KFTGEE 265
>sp|O75616|ERAL1_HUMAN GTPase Era, mitochondrial OS=Homo sapiens GN=ERAL1 PE=1 SV=2
Length = 437
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 12 PTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV 70
P P N VVLLG GKS N +LGR+ F S TT C+ + +
Sbjct: 105 PDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVH--TTRCQALGVITEKETQ 162
Query: 71 VNVIDTPGL 79
V ++DTPG+
Sbjct: 163 VILLDTPGI 171
>sp|Q9PFV1|RSGA_XYLFA Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain 9a5c) GN=rsgA PE=3 SV=1
Length = 341
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RTV LLG +G GKS N++LG + K S G TT L G +ID
Sbjct: 204 RTVALLGSSGAGKSTLTNTLLGEQRMKVGEVRQRDSRGRHTTTHRALLPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSEFVGKE 92
TPG+ +L +F G+E
Sbjct: 262 TPGMREL----KFTGEE 274
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis
thaliana GN=TOC159 PE=1 SV=1
Length = 1503
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
+++LG+ G GKSAT NSILG + AS + G++TT + + +G + IDTPGL
Sbjct: 857 NILVLGKAGVGKSATINSILGNQI--ASIDAFGLSTTSVREISGTVNGVKITFIDTPGL 913
>sp|E9PW74|GIMD1_MOUSE GTPase IMAP family member GIMD1 OS=Mus musculus GN=Gimd1 PE=3 SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT------TCEMKTTVLKDGQ----VV 71
+ + GRT +GKS+ GN +LG F +S VT +C + + + GQ +
Sbjct: 11 LAVFGRTQSGKSSAGNVLLGSADFYSSFAPGSVTKECSLGRSCHLHGFMRRGGQEISLQI 70
Query: 72 NVIDTPGLFDLSAGSEFVGKEIVKCL--GMAKDGIH 105
V+DTPG + V +E+ K L ++G+H
Sbjct: 71 QVLDTPGYPHSKLSTRCVKQEVKKALLHHFGQEGLH 106
>sp|Q8JIF5|ERAL1_CHICK GTPase Era, mitochondrial OS=Gallus gallus GN=ERAL1 PE=1 SV=1
Length = 461
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 4 RVIDGDWKPTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT 62
R++ G +P P+ + + ++G +GKS N +LGR+ F S TT C+ +
Sbjct: 76 RIVQG--RPDQPAEPKVLRISIIGAPNSGKSTLSNQLLGRKVFPVSKKVH--TTRCKARG 131
Query: 63 TVLKDGQVVNVIDTPGL 79
+ + + ++DTPGL
Sbjct: 132 VITHEDTQLIILDTPGL 148
>sp|Q5EBA0|ERAL1_RAT GTPase Era, mitochondrial OS=Rattus norvegicus GN=Eral1 PE=2 SV=2
Length = 437
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 12 PTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV 70
P P N VVLLG GKS N +LGR+ F S TT C+ + +
Sbjct: 105 PDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVH--TTRCQALGVITEKETQ 162
Query: 71 VNVIDTPGL 79
V ++DTPG+
Sbjct: 163 VILLDTPGI 171
>sp|Q9CZU4|ERAL1_MOUSE GTPase Era, mitochondrial OS=Mus musculus GN=Eral1 PE=2 SV=1
Length = 437
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 12 PTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV 70
P P N VVLLG GKS N +LGR+ F S TT C+ + +
Sbjct: 105 PDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVH--TTRCQALGVITEKETQ 162
Query: 71 VNVIDTPGL 79
V ++DTPG+
Sbjct: 163 VILLDTPGI 171
>sp|A8MIS4|ENGB_ALKOO Probable GTP-binding protein EngB OS=Alkaliphilus oremlandii
(strain OhILAs) GN=engB PE=3 SV=1
Length = 208
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI 74
P NG + L GR+ GKS+T N+IL RR + S G T T +++
Sbjct: 19 PENGLPEIALAGRSNVGKSSTVNTILKRRKLARVSASPGKTRTINFYIV----NNEFHIV 74
Query: 75 DTPGL 79
D PG
Sbjct: 75 DLPGY 79
>sp|Q92JA9|ERA_RICCN GTPase Era OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=era PE=3 SV=1
Length = 339
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG 78
+V ++GR +GKS N I+G K S + V TT + T + LKD QV+ + DTPG
Sbjct: 54 SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 109
Query: 79 LFDLSAGSEFVGKEIVKC 96
+F+ E K +V+C
Sbjct: 110 IFEPKGSLE---KAMVRC 124
>sp|B0S6U7|ERAL1_DANRE GTPase Era, mitochondrial OS=Danio rerio GN=eral1 PE=2 SV=1
Length = 447
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 12 PTSPSNGER-TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL--KDG 68
P P N + V ++G GKS N +LGR+ F A SS V TT VL D
Sbjct: 102 PDQPENAKSLKVAIVGSPNAGKSTLTNQLLGRKLF---AVSSKVHTTRSRAVGVLTENDT 158
Query: 69 QVVNVIDTPGL 79
Q+V ++DTPGL
Sbjct: 159 QIV-LLDTPGL 168
>sp|A8GM80|ERA_RICAH GTPase Era OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1
Length = 293
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG 78
+V ++GR +GKS N I+G K S + V TT + T + LKD QV+ + DTPG
Sbjct: 8 SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 63
Query: 79 LFDLSAGSEFVGKEIVKC 96
+F+ E K +V+C
Sbjct: 64 IFEPKGSLE---KAMVRC 78
>sp|A5PK43|ERAL1_BOVIN GTPase Era, mitochondrial OS=Bos taurus GN=ERAL1 PE=2 SV=1
Length = 437
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 11 KPTSPSNGE-RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL--KD 67
+P P N VVLLG GKS N +LGR+ F S V TT V+ K+
Sbjct: 104 RPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPV---SKKVHTTRSQALGVITEKE 160
Query: 68 GQVVNVIDTPGL 79
QV+ ++DTPGL
Sbjct: 161 TQVI-LLDTPGL 171
>sp|Q8P5H9|RSGA_XANCP Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rsgA PE=3 SV=1
Length = 363
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RT VL+G +G GKS N++LG + K +A S G TT L G +ID
Sbjct: 204 RTAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSE 87
TPG+ +L E
Sbjct: 262 TPGMRELKPTGE 273
>sp|B0RNZ3|RSGA_XANCB Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rsgA PE=3 SV=1
Length = 363
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RT VL+G +G GKS N++LG + K +A S G TT L G +ID
Sbjct: 204 RTAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSE 87
TPG+ +L E
Sbjct: 262 TPGMRELKPTGE 273
>sp|Q4UYJ6|RSGA_XANC8 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rsgA PE=3 SV=1
Length = 363
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RT VL+G +G GKS N++LG + K +A S G TT L G +ID
Sbjct: 204 RTAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSE 87
TPG+ +L E
Sbjct: 262 TPGMRELKPTGE 273
>sp|Q3BPG1|RSGA_XANC5 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rsgA PE=3 SV=1
Length = 363
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RT VL+G +G GKS N++LG + K +A S G TT L G +ID
Sbjct: 204 RTAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSE 87
TPG+ +L E
Sbjct: 262 TPGMRELKPTGE 273
>sp|Q8PGW9|RSGA_XANAC Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rsgA PE=3 SV=1
Length = 363
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSGVTTTCEMKTTVLKDGQVVNVID 75
RT VL+G +G GKS N++LG + K +A S G TT L G +ID
Sbjct: 204 RTAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGAC--LID 261
Query: 76 TPGLFDLSAGSE 87
TPG+ +L E
Sbjct: 262 TPGMRELKPTGE 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,806,574
Number of Sequences: 539616
Number of extensions: 1563441
Number of successful extensions: 7936
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 582
Number of HSP's that attempted gapping in prelim test: 7579
Number of HSP's gapped (non-prelim): 824
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)