Query 038901
Match_columns 107
No_of_seqs 196 out of 1534
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3839 MalK ABC-type sugar tr 99.7 1.8E-17 3.8E-22 111.3 4.7 83 10-100 20-102 (338)
2 COG1131 CcmA ABC-type multidru 99.7 1.5E-17 3.3E-22 110.6 4.2 88 10-104 22-109 (293)
3 COG3842 PotA ABC-type spermidi 99.7 4.9E-17 1.1E-21 109.7 4.3 84 8-99 20-103 (352)
4 PF04548 AIG1: AIG1 family; I 99.7 4.2E-16 9.1E-21 99.5 7.7 85 21-106 2-86 (212)
5 COG1126 GlnQ ABC-type polar am 99.7 3E-17 6.6E-22 103.6 2.3 83 9-96 18-100 (240)
6 COG1136 SalX ABC-type antimicr 99.7 5.7E-17 1.2E-21 103.6 3.4 87 6-97 18-107 (226)
7 COG0410 LivF ABC-type branched 99.6 7.8E-17 1.7E-21 102.5 2.2 88 6-98 16-103 (237)
8 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 3.7E-15 8E-20 94.0 9.6 85 21-106 2-86 (196)
9 COG1116 TauB ABC-type nitrate/ 99.6 3.4E-16 7.3E-21 100.7 4.7 79 9-98 19-97 (248)
10 COG1118 CysA ABC-type sulfate/ 99.6 3.7E-16 8E-21 103.1 4.9 85 11-100 20-104 (345)
11 COG1120 FepC ABC-type cobalami 99.6 9.7E-17 2.1E-21 104.3 1.2 69 13-82 22-90 (258)
12 COG0411 LivG ABC-type branched 99.6 5E-17 1.1E-21 104.1 -1.4 85 8-97 19-103 (250)
13 COG1125 OpuBA ABC-type proline 99.6 4.1E-16 9E-21 100.7 1.6 83 11-99 19-101 (309)
14 COG4555 NatA ABC-type Na+ tran 99.6 4.5E-16 9.7E-21 97.6 1.5 90 6-102 15-104 (245)
15 PRK13537 nodulation ABC transp 99.6 2.7E-15 5.9E-20 100.4 4.6 83 11-100 25-107 (306)
16 cd03224 ABC_TM1139_LivF_branch 99.6 4.1E-15 8.8E-20 95.2 4.2 79 13-96 20-98 (222)
17 PRK13536 nodulation factor exp 99.5 6E-15 1.3E-19 100.0 5.0 80 13-99 61-140 (340)
18 COG4152 ABC-type uncharacteriz 99.5 1.8E-15 3.9E-20 97.3 2.2 87 8-104 17-103 (300)
19 cd03219 ABC_Mj1267_LivG_branch 99.5 4.1E-15 8.8E-20 96.0 3.9 80 12-96 19-98 (236)
20 COG3840 ThiQ ABC-type thiamine 99.5 2.2E-15 4.9E-20 93.3 2.4 76 13-96 19-94 (231)
21 TIGR03265 PhnT2 putative 2-ami 99.5 6.8E-15 1.5E-19 100.1 4.7 78 13-98 24-101 (353)
22 cd03218 ABC_YhbG The ABC trans 99.5 8.1E-15 1.7E-19 94.4 4.7 81 11-96 18-98 (232)
23 COG1135 AbcC ABC-type metal io 99.5 1.2E-15 2.6E-20 100.7 0.9 90 6-100 19-110 (339)
24 PRK11650 ugpC glycerol-3-phosp 99.5 6.6E-15 1.4E-19 100.3 4.5 78 12-97 23-100 (356)
25 TIGR01188 drrA daunorubicin re 99.5 4.7E-15 1E-19 99.0 3.7 80 12-98 12-91 (302)
26 PRK11432 fbpC ferric transport 99.5 8.2E-15 1.8E-19 99.7 4.8 78 12-97 25-102 (351)
27 cd03261 ABC_Org_Solvent_Resist 99.5 6.8E-15 1.5E-19 95.0 4.1 79 13-96 20-100 (235)
28 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 9.7E-15 2.1E-19 93.3 4.3 79 13-96 24-105 (218)
29 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 1.3E-14 2.8E-19 94.1 4.7 82 9-97 20-101 (254)
30 TIGR03410 urea_trans_UrtE urea 99.5 8.6E-15 1.9E-19 94.2 3.8 80 12-96 19-98 (230)
31 cd03295 ABC_OpuCA_Osmoprotecti 99.5 1.4E-14 2.9E-19 94.0 4.6 78 13-96 21-98 (242)
32 cd03263 ABC_subfamily_A The AB 99.5 1.7E-14 3.6E-19 92.3 4.8 78 12-96 21-98 (220)
33 PRK10851 sulfate/thiosulfate t 99.5 2E-14 4.2E-19 97.9 5.1 77 13-97 22-98 (353)
34 TIGR03522 GldA_ABC_ATP gliding 99.5 1.5E-14 3.2E-19 96.6 4.5 80 13-99 22-101 (301)
35 PRK09452 potA putrescine/sperm 99.5 1.6E-14 3.4E-19 99.0 4.7 78 12-97 33-110 (375)
36 PRK11607 potG putrescine trans 99.5 1.8E-14 4E-19 98.8 4.8 77 13-97 39-115 (377)
37 TIGR00960 3a0501s02 Type II (G 99.5 1.1E-14 2.3E-19 93.0 3.4 79 13-96 23-103 (216)
38 cd03259 ABC_Carb_Solutes_like 99.5 2.3E-14 5E-19 91.3 4.9 68 12-82 19-86 (213)
39 cd03296 ABC_CysA_sulfate_impor 99.5 3.3E-14 7.1E-19 92.1 5.6 75 13-95 22-96 (239)
40 cd03298 ABC_ThiQ_thiamine_tran 99.5 2.8E-14 6.1E-19 90.8 5.2 78 11-96 16-93 (211)
41 TIGR01186 proV glycine betaine 99.5 1.3E-14 2.9E-19 98.9 3.8 81 12-97 12-95 (363)
42 cd03269 ABC_putative_ATPase Th 99.5 2.4E-14 5.1E-19 91.1 4.6 74 13-96 20-93 (210)
43 TIGR01288 nodI ATP-binding ABC 99.5 2.6E-14 5.7E-19 95.5 4.8 79 11-96 22-100 (303)
44 cd03266 ABC_NatA_sodium_export 99.5 2.3E-14 4.9E-19 91.6 4.3 77 13-96 25-101 (218)
45 PRK11000 maltose/maltodextrin 99.5 2.8E-14 6.1E-19 97.7 5.0 77 13-97 23-99 (369)
46 cd03293 ABC_NrtD_SsuB_transpor 99.5 4.7E-14 1E-18 90.3 5.8 73 12-95 23-95 (220)
47 TIGR02314 ABC_MetN D-methionin 99.5 2E-14 4.3E-19 97.5 4.2 83 9-96 21-105 (343)
48 TIGR03411 urea_trans_UrtD urea 99.5 1.9E-14 4.1E-19 93.3 3.9 80 12-96 21-100 (242)
49 cd03265 ABC_DrrA DrrA is the A 99.5 2.3E-14 5E-19 91.8 4.1 78 12-96 19-96 (220)
50 PRK11300 livG leucine/isoleuci 99.5 1.9E-14 4.1E-19 93.9 3.8 79 13-96 25-103 (255)
51 PRK11629 lolD lipoprotein tran 99.5 2.1E-14 4.6E-19 92.7 3.9 80 12-96 28-110 (233)
52 TIGR03608 L_ocin_972_ABC putat 99.5 1.3E-14 2.9E-19 91.9 3.0 79 13-96 18-99 (206)
53 COG1127 Ttg2A ABC-type transpo 99.5 9.3E-15 2E-19 93.7 2.2 80 13-97 28-109 (263)
54 TIGR02673 FtsE cell division A 99.5 2.2E-14 4.9E-19 91.4 3.9 80 12-96 21-102 (214)
55 TIGR03258 PhnT 2-aminoethylpho 99.5 3E-14 6.5E-19 97.3 4.7 78 13-98 25-104 (362)
56 cd03301 ABC_MalK_N The N-termi 99.5 4.9E-14 1.1E-18 89.8 5.4 67 13-82 20-86 (213)
57 TIGR02211 LolD_lipo_ex lipopro 99.5 2.1E-14 4.6E-19 91.9 3.8 79 12-95 24-105 (221)
58 COG2884 FtsE Predicted ATPase 99.5 2.7E-14 5.8E-19 88.9 4.0 89 7-100 16-106 (223)
59 PRK10895 lipopolysaccharide AB 99.5 1.8E-14 4E-19 93.3 3.4 79 13-96 23-101 (241)
60 COG3638 ABC-type phosphate/pho 99.5 2.5E-14 5.3E-19 91.5 3.9 81 13-98 24-106 (258)
61 COG1137 YhbG ABC-type (unclass 99.5 3.4E-16 7.5E-21 98.0 -4.4 85 12-101 23-107 (243)
62 cd03262 ABC_HisP_GlnQ_permease 99.5 2.3E-14 5E-19 91.2 3.8 71 12-82 19-90 (213)
63 TIGR02142 modC_ABC molybdenum 99.5 4.8E-14 1.1E-18 96.0 5.6 79 13-96 17-98 (354)
64 cd03258 ABC_MetN_methionine_tr 99.5 2.6E-14 5.6E-19 92.2 4.0 79 13-96 25-105 (233)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.5 5E-14 1.1E-18 92.8 5.3 80 12-96 43-125 (269)
66 cd03268 ABC_BcrA_bacitracin_re 99.5 3.8E-14 8.2E-19 90.0 4.5 76 13-96 20-95 (208)
67 PRK10908 cell division protein 99.5 3.5E-14 7.5E-19 91.0 4.3 70 13-82 22-93 (222)
68 PRK09536 btuD corrinoid ABC tr 99.5 2.4E-14 5.1E-19 98.8 3.7 78 13-96 23-100 (402)
69 cd03257 ABC_NikE_OppD_transpor 99.5 3.8E-14 8.2E-19 91.0 4.4 68 11-78 23-92 (228)
70 cd03229 ABC_Class3 This class 99.5 3.1E-14 6.8E-19 88.6 3.8 70 13-82 20-90 (178)
71 cd03225 ABC_cobalt_CbiO_domain 99.5 2.6E-14 5.6E-19 90.9 3.4 65 13-78 21-85 (211)
72 PRK11153 metN DL-methionine tr 99.5 3.1E-14 6.7E-19 96.6 4.0 80 12-96 24-105 (343)
73 cd03230 ABC_DR_subfamily_A Thi 99.5 6.2E-14 1.3E-18 86.9 5.0 68 13-82 20-87 (173)
74 PRK11614 livF leucine/isoleuci 99.5 2.7E-14 5.8E-19 92.3 3.5 70 13-82 25-94 (237)
75 TIGR02868 CydC thiol reductant 99.5 1.6E-14 3.6E-19 102.6 2.6 67 14-82 356-422 (529)
76 cd03256 ABC_PhnC_transporter A 99.5 2.9E-14 6.3E-19 92.3 3.6 71 12-82 20-92 (241)
77 TIGR01277 thiQ thiamine ABC tr 99.5 9.2E-14 2E-18 88.6 5.8 76 12-95 17-92 (213)
78 cd03292 ABC_FtsE_transporter F 99.5 2.7E-14 5.8E-19 91.0 3.3 79 13-96 21-101 (214)
79 PRK13548 hmuV hemin importer A 99.5 5E-14 1.1E-18 92.3 4.4 78 13-96 22-99 (258)
80 cd03264 ABC_drug_resistance_li 99.5 3.5E-14 7.7E-19 90.3 3.5 74 15-96 22-95 (211)
81 TIGR01978 sufC FeS assembly AT 99.5 4.5E-14 9.7E-19 91.5 4.0 72 11-82 18-91 (243)
82 TIGR01189 ccmA heme ABC export 99.5 8.7E-14 1.9E-18 87.8 5.2 78 12-96 19-96 (198)
83 PRK11144 modC molybdate transp 99.5 7.4E-14 1.6E-18 95.1 5.3 78 13-95 18-98 (352)
84 PRK10584 putative ABC transpor 99.5 4.9E-14 1.1E-18 90.6 4.2 70 13-82 30-102 (228)
85 COG4619 ABC-type uncharacteriz 99.5 2.2E-15 4.9E-20 92.3 -1.9 70 13-83 23-92 (223)
86 PRK10771 thiQ thiamine transpo 99.5 8.6E-14 1.9E-18 89.8 5.3 76 12-95 18-93 (232)
87 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 7.6E-14 1.6E-18 90.2 4.9 68 13-82 21-88 (236)
88 TIGR02315 ABC_phnC phosphonate 99.5 3E-14 6.4E-19 92.4 3.0 71 12-82 21-93 (243)
89 PRK10070 glycine betaine trans 99.5 4.9E-14 1.1E-18 97.2 4.1 80 12-96 47-129 (400)
90 PRK10575 iron-hydroxamate tran 99.5 4.6E-14 1E-18 92.7 3.8 78 12-95 30-107 (265)
91 PRK11248 tauB taurine transpor 99.5 1.4E-13 3E-18 90.1 6.0 65 12-82 20-84 (255)
92 cd03260 ABC_PstB_phosphate_tra 99.5 3.1E-14 6.7E-19 91.5 2.7 78 13-96 20-103 (227)
93 PRK11247 ssuB aliphatic sulfon 99.5 1E-13 2.2E-18 90.8 5.2 64 13-82 32-95 (257)
94 cd03231 ABC_CcmA_heme_exporter 99.5 1.1E-13 2.3E-18 87.7 4.9 78 11-95 18-95 (201)
95 PRK11831 putative ABC transpor 99.5 8.5E-14 1.8E-18 91.7 4.7 78 13-95 27-106 (269)
96 cd03215 ABC_Carb_Monos_II This 99.5 6.2E-14 1.4E-18 87.5 3.8 79 13-96 20-101 (182)
97 PRK10253 iron-enterobactin tra 99.5 5.9E-14 1.3E-18 92.2 3.7 70 12-82 26-95 (265)
98 cd03233 ABC_PDR_domain1 The pl 99.5 7.9E-14 1.7E-18 88.4 4.2 79 12-97 26-107 (202)
99 PRK09493 glnQ glutamine ABC tr 99.5 6.7E-14 1.4E-18 90.7 3.9 78 13-95 21-99 (240)
100 PRK13538 cytochrome c biogenes 99.5 1.1E-13 2.4E-18 87.7 4.8 79 11-96 19-97 (204)
101 COG1129 MglA ABC-type sugar tr 99.4 3.9E-14 8.6E-19 99.1 2.8 87 6-97 21-107 (500)
102 COG1124 DppF ABC-type dipeptid 99.4 1.7E-13 3.7E-18 87.9 5.5 69 11-79 25-93 (252)
103 PRK14247 phosphate ABC transpo 99.4 9.7E-14 2.1E-18 90.4 4.4 80 11-96 21-105 (250)
104 COG4559 ABC-type hemin transpo 99.4 2.5E-14 5.5E-19 90.4 1.5 81 13-99 21-101 (259)
105 PRK10247 putative ABC transpor 99.4 9.9E-14 2.1E-18 89.2 4.2 68 13-81 27-94 (225)
106 TIGR03873 F420-0_ABC_ATP propo 99.4 8.5E-14 1.9E-18 91.0 4.0 69 13-82 21-89 (256)
107 COG4988 CydD ABC-type transpor 99.4 6.2E-14 1.4E-18 98.8 3.5 72 10-82 338-409 (559)
108 PRK13540 cytochrome c biogenes 99.4 8E-14 1.7E-18 88.1 3.7 76 13-95 21-96 (200)
109 cd03226 ABC_cobalt_CbiO_domain 99.4 9.3E-14 2E-18 88.1 4.0 63 12-78 19-81 (205)
110 PRK13543 cytochrome c biogenes 99.4 2.2E-13 4.8E-18 87.0 5.6 66 13-82 31-96 (214)
111 PRK14267 phosphate ABC transpo 99.4 1.4E-13 3E-18 89.8 4.5 78 12-95 23-107 (253)
112 PRK11231 fecE iron-dicitrate t 99.4 7.8E-14 1.7E-18 91.1 3.3 69 13-82 22-90 (255)
113 PRK11264 putative amino-acid A 99.4 1.2E-13 2.7E-18 89.8 4.3 71 12-82 22-99 (250)
114 PRK13632 cbiO cobalt transport 99.4 1E-13 2.2E-18 91.4 3.8 65 13-78 29-93 (271)
115 PRK14250 phosphate ABC transpo 99.4 1.3E-13 2.8E-18 89.5 4.3 69 12-81 22-90 (241)
116 PRK13644 cbiO cobalt transport 99.4 1.1E-13 2.3E-18 91.4 4.0 66 13-78 22-87 (274)
117 PRK10762 D-ribose transporter 99.4 7.1E-14 1.5E-18 98.9 3.3 78 13-95 24-101 (501)
118 TIGR01166 cbiO cobalt transpor 99.4 1.5E-13 3.3E-18 86.2 4.3 67 12-78 11-78 (190)
119 TIGR00968 3a0106s01 sulfate AB 99.4 2.6E-13 5.5E-18 87.9 5.4 75 14-96 21-95 (237)
120 PRK13635 cbiO cobalt transport 99.4 8.5E-14 1.8E-18 92.1 3.2 65 13-78 27-91 (279)
121 PRK11124 artP arginine transpo 99.4 1.1E-13 2.5E-18 89.7 3.7 77 13-94 22-103 (242)
122 cd03234 ABCG_White The White s 99.4 2.3E-13 4.9E-18 87.5 5.1 77 11-96 25-104 (226)
123 PRK15112 antimicrobial peptide 99.4 1.7E-13 3.7E-18 90.1 4.5 68 10-78 30-97 (267)
124 TIGR01184 ntrCD nitrate transp 99.4 2.4E-13 5.1E-18 87.7 5.0 72 14-96 6-77 (230)
125 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 9.1E-14 2E-18 101.4 3.4 69 13-82 473-541 (686)
126 PRK13650 cbiO cobalt transport 99.4 7.4E-14 1.6E-18 92.4 2.7 65 13-78 27-91 (279)
127 cd03267 ABC_NatA_like Similar 99.4 3.2E-13 7E-18 87.4 5.6 68 13-82 41-109 (236)
128 TIGR03415 ABC_choXWV_ATP choli 99.4 1.3E-13 2.8E-18 94.6 3.9 81 12-97 43-130 (382)
129 COG1117 PstB ABC-type phosphat 99.4 5E-13 1.1E-17 84.7 6.1 75 8-82 22-102 (253)
130 TIGR03005 ectoine_ehuA ectoine 99.4 1.7E-13 3.6E-18 89.4 4.1 70 13-82 20-101 (252)
131 PRK15439 autoinducer 2 ABC tra 99.4 1.1E-13 2.4E-18 98.1 3.4 71 12-82 30-100 (510)
132 cd03297 ABC_ModC_molybdenum_tr 99.4 3.3E-13 7.2E-18 86.1 5.3 71 11-82 16-89 (214)
133 COG3845 ABC-type uncharacteriz 99.4 7.4E-14 1.6E-18 96.8 2.4 86 7-97 18-103 (501)
134 TIGR02982 heterocyst_DevA ABC 99.4 1.2E-13 2.6E-18 88.5 3.0 79 13-96 25-105 (220)
135 PRK11174 cysteine/glutathione 99.4 1.1E-13 2.3E-18 99.5 3.1 67 14-82 371-437 (588)
136 PRK13541 cytochrome c biogenes 99.4 2.8E-13 6E-18 85.4 4.6 74 13-96 20-93 (195)
137 cd03369 ABCC_NFT1 Domain 2 of 99.4 1.3E-13 2.9E-18 87.5 3.1 68 13-81 28-95 (207)
138 TIGR02769 nickel_nikE nickel i 99.4 2.1E-13 4.5E-18 89.6 4.1 69 10-78 28-98 (265)
139 PRK09700 D-allose transporter 99.4 1.2E-13 2.6E-18 97.9 3.2 71 12-82 24-94 (510)
140 cd03250 ABCC_MRP_domain1 Domai 99.4 3.5E-13 7.5E-18 85.4 5.0 57 11-81 23-79 (204)
141 TIGR03740 galliderm_ABC gallid 99.4 5.1E-13 1.1E-17 85.7 5.9 73 13-95 20-92 (223)
142 cd03213 ABCG_EPDR ABCG transpo 99.4 3.4E-13 7.3E-18 85.0 4.9 77 11-96 27-105 (194)
143 PRK10790 putative multidrug tr 99.4 1.4E-13 3E-18 99.0 3.5 69 13-82 361-429 (592)
144 PRK10619 histidine/lysine/argi 99.4 2.2E-13 4.8E-18 89.1 4.2 78 13-95 25-114 (257)
145 COG4525 TauB ABC-type taurine 99.4 6.1E-13 1.3E-17 83.5 5.8 79 10-99 22-100 (259)
146 cd03300 ABC_PotA_N PotA is an 99.4 4.8E-13 1E-17 86.3 5.6 67 13-82 20-86 (232)
147 PRK13647 cbiO cobalt transport 99.4 1.2E-13 2.6E-18 91.2 2.9 64 14-78 26-89 (274)
148 PRK13539 cytochrome c biogenes 99.4 3.2E-13 6.9E-18 85.8 4.7 75 12-95 21-95 (207)
149 cd03290 ABCC_SUR1_N The SUR do 99.4 4.2E-13 9.2E-18 85.8 5.3 68 14-81 22-92 (218)
150 PRK13648 cbiO cobalt transport 99.4 1.5E-13 3.2E-18 90.5 3.2 65 13-78 29-93 (269)
151 cd03237 ABC_RNaseL_inhibitor_d 99.4 6.6E-13 1.4E-17 86.5 6.2 52 16-80 22-73 (246)
152 PRK11176 lipid transporter ATP 99.4 9.5E-14 2.1E-18 99.6 2.4 69 13-82 363-431 (582)
153 PRK13549 xylose transporter AT 99.4 1.4E-13 3E-18 97.5 3.2 79 13-96 25-105 (506)
154 TIGR02770 nickel_nikD nickel i 99.4 4.2E-13 9.1E-18 86.5 5.1 63 13-78 6-72 (230)
155 PRK11288 araG L-arabinose tran 99.4 1.7E-13 3.6E-18 97.0 3.5 71 12-82 23-93 (501)
156 cd03253 ABCC_ATM1_transporter 99.4 1.5E-13 3.3E-18 88.7 2.9 68 13-81 21-88 (236)
157 cd03235 ABC_Metallic_Cations A 99.4 2.6E-13 5.6E-18 86.5 3.9 62 12-79 18-79 (213)
158 cd03251 ABCC_MsbA MsbA is an e 99.4 1.2E-13 2.7E-18 89.1 2.4 68 13-81 22-89 (234)
159 COG2274 SunT ABC-type bacterio 99.4 1E-13 2.2E-18 101.1 2.1 70 12-82 492-561 (709)
160 cd03252 ABCC_Hemolysin The ABC 99.4 1.6E-13 3.4E-18 88.7 2.7 68 13-81 22-89 (237)
161 TIGR00958 3a01208 Conjugate Tr 99.4 1.3E-13 2.8E-18 101.1 2.5 70 12-82 500-569 (711)
162 cd03254 ABCC_Glucan_exporter_l 99.4 1.4E-13 3E-18 88.5 2.4 69 12-81 22-90 (229)
163 cd03246 ABCC_Protease_Secretio 99.4 1.9E-13 4.2E-18 84.7 2.9 68 13-81 22-89 (173)
164 cd03228 ABCC_MRP_Like The MRP 99.4 2.1E-13 4.6E-18 84.3 3.1 69 12-81 21-89 (171)
165 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.4 1.3E-13 2.7E-18 89.2 2.1 69 12-81 22-90 (238)
166 cd03299 ABC_ModC_like Archeal 99.4 7.3E-13 1.6E-17 85.7 5.7 67 13-82 19-85 (235)
167 PRK10982 galactose/methyl gala 99.4 1.8E-13 4E-18 96.6 3.1 70 13-82 18-87 (491)
168 COG4148 ModC ABC-type molybdat 99.4 2.6E-13 5.7E-18 89.0 3.6 76 18-98 23-101 (352)
169 cd03244 ABCC_MRP_domain2 Domai 99.4 2.1E-13 4.5E-18 87.3 3.1 68 13-81 24-91 (221)
170 TIGR02857 CydD thiol reductant 99.4 1.8E-13 4E-18 97.2 3.1 69 13-82 342-410 (529)
171 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.1E-13 2.4E-18 101.2 2.0 68 14-82 500-567 (710)
172 PRK13547 hmuV hemin importer A 99.4 2.3E-13 5E-18 89.8 3.3 35 12-46 20-54 (272)
173 cd03217 ABC_FeS_Assembly ABC-t 99.4 2.7E-13 5.9E-18 85.8 3.5 72 11-82 18-91 (200)
174 TIGR01193 bacteriocin_ABC ABC- 99.4 1.3E-13 2.8E-18 100.9 2.2 69 13-82 494-562 (708)
175 cd03232 ABC_PDR_domain2 The pl 99.4 4.3E-13 9.2E-18 84.4 4.2 74 13-96 27-102 (192)
176 PRK13657 cyclic beta-1,2-gluca 99.4 2.2E-13 4.8E-18 97.9 3.3 69 13-82 355-423 (588)
177 PF01926 MMR_HSR1: 50S ribosom 99.4 5.4E-12 1.2E-16 73.3 8.6 60 21-82 1-60 (116)
178 PRK13640 cbiO cobalt transport 99.4 2.2E-13 4.7E-18 90.3 2.8 64 14-78 28-94 (282)
179 KOG0058 Peptide exporter, ABC 99.4 1.8E-13 3.9E-18 98.4 2.5 71 11-82 486-556 (716)
180 PRK13641 cbiO cobalt transport 99.4 3.7E-13 8E-18 89.4 3.8 68 10-77 24-94 (287)
181 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.2E-12 2.5E-17 93.7 6.6 67 12-95 24-90 (552)
182 cd03223 ABCD_peroxisomal_ALDP 99.4 9.8E-13 2.1E-17 81.1 5.4 67 11-95 19-85 (166)
183 TIGR02324 CP_lyasePhnL phospho 99.4 2.2E-13 4.9E-18 87.4 2.6 72 11-82 26-104 (224)
184 PRK14246 phosphate ABC transpo 99.4 7E-13 1.5E-17 86.9 5.0 78 13-95 30-112 (257)
185 PRK11160 cysteine/glutathione 99.4 2.2E-13 4.7E-18 97.8 2.8 69 13-82 360-428 (574)
186 PRK13652 cbiO cobalt transport 99.4 3.5E-13 7.5E-18 89.1 3.5 65 13-78 24-88 (277)
187 PRK11819 putative ABC transpor 99.4 1.2E-12 2.6E-17 93.7 6.5 68 11-95 25-92 (556)
188 cd03248 ABCC_TAP TAP, the Tran 99.4 1.7E-13 3.7E-18 88.0 1.9 68 13-81 34-101 (226)
189 COG4181 Predicted ABC-type tra 99.4 3.5E-13 7.5E-18 83.1 3.1 83 10-97 27-112 (228)
190 cd03245 ABCC_bacteriocin_expor 99.4 3.1E-13 6.8E-18 86.4 3.1 68 13-81 24-91 (220)
191 PRK03695 vitamin B12-transport 99.4 4.1E-13 8.9E-18 87.5 3.5 71 10-82 13-83 (248)
192 PRK14241 phosphate transporter 99.4 6.4E-13 1.4E-17 87.0 4.4 70 12-82 23-99 (258)
193 PRK13637 cbiO cobalt transport 99.4 4.4E-13 9.6E-18 89.1 3.7 66 13-78 27-93 (287)
194 PRK13631 cbiO cobalt transport 99.4 6E-13 1.3E-17 89.7 4.3 42 11-52 44-85 (320)
195 PRK13642 cbiO cobalt transport 99.4 3.9E-13 8.5E-18 88.9 3.4 66 12-78 26-91 (277)
196 PRK13643 cbiO cobalt transport 99.4 5.5E-13 1.2E-17 88.7 4.0 68 10-77 23-93 (288)
197 COG1122 CbiO ABC-type cobalt t 99.4 9.3E-13 2E-17 85.2 4.9 70 10-79 21-90 (235)
198 TIGR02633 xylG D-xylose ABC tr 99.4 3.8E-13 8.2E-18 95.1 3.3 70 13-82 21-92 (500)
199 PRK15079 oligopeptide ABC tran 99.4 4.7E-13 1E-17 90.5 3.6 73 10-82 38-114 (331)
200 TIGR03375 type_I_sec_LssB type 99.4 2.4E-13 5.2E-18 99.3 2.2 69 13-82 485-553 (694)
201 PRK14269 phosphate ABC transpo 99.4 7.1E-13 1.5E-17 86.2 4.2 68 13-81 22-92 (246)
202 TIGR00972 3a0107s01c2 phosphat 99.4 9.5E-13 2.1E-17 85.6 4.7 70 12-81 20-95 (247)
203 CHL00131 ycf16 sulfate ABC tra 99.4 1.3E-12 2.7E-17 85.2 5.2 71 12-82 26-98 (252)
204 PRK13634 cbiO cobalt transport 99.4 6.4E-13 1.4E-17 88.4 3.9 66 13-78 27-95 (290)
205 TIGR02204 MsbA_rel ABC transpo 99.4 2.7E-13 5.7E-18 97.2 2.1 69 13-82 360-428 (576)
206 PRK13646 cbiO cobalt transport 99.4 8.1E-13 1.8E-17 87.8 4.3 66 12-77 26-94 (286)
207 PRK13649 cbiO cobalt transport 99.4 7.2E-13 1.6E-17 87.7 4.0 65 13-77 27-94 (280)
208 PRK14273 phosphate ABC transpo 99.4 9.8E-13 2.1E-17 85.9 4.5 70 12-81 26-101 (254)
209 PRK13633 cobalt transporter AT 99.4 7.3E-13 1.6E-17 87.7 3.9 67 12-78 29-95 (280)
210 cd03247 ABCC_cytochrome_bd The 99.4 2.7E-13 5.8E-18 84.4 1.7 67 13-81 22-88 (178)
211 PRK09984 phosphonate/organopho 99.3 7.8E-13 1.7E-17 86.7 3.9 78 13-95 24-108 (262)
212 TIGR02203 MsbA_lipidA lipid A 99.3 3.1E-13 6.7E-18 96.7 2.1 68 14-82 353-420 (571)
213 PRK14272 phosphate ABC transpo 99.3 1.3E-12 2.9E-17 85.1 4.9 70 13-82 24-99 (252)
214 PRK13645 cbiO cobalt transport 99.3 1.6E-12 3.4E-17 86.5 5.2 66 13-78 31-100 (289)
215 PRK14256 phosphate ABC transpo 99.3 1.4E-12 2.9E-17 85.1 4.8 70 13-82 24-99 (252)
216 COG1134 TagH ABC-type polysacc 99.3 1.4E-12 3E-17 83.9 4.5 75 7-100 41-116 (249)
217 PRK10789 putative multidrug tr 99.3 4.5E-13 9.8E-18 96.1 2.5 69 13-82 335-403 (569)
218 cd03216 ABC_Carb_Monos_I This 99.3 6.5E-13 1.4E-17 81.7 2.8 40 12-51 19-58 (163)
219 PRK09700 D-allose transporter 99.3 4.4E-13 9.5E-18 95.1 2.3 66 12-77 282-347 (510)
220 PRK15177 Vi polysaccharide exp 99.3 4.9E-12 1.1E-16 80.8 6.7 38 13-50 7-44 (213)
221 PRK15064 ABC transporter ATP-b 99.3 3.1E-12 6.7E-17 91.1 6.4 58 13-82 21-78 (530)
222 PF00005 ABC_tran: ABC transpo 99.3 5.5E-14 1.2E-18 83.8 -2.2 66 16-82 8-73 (137)
223 PRK10418 nikD nickel transport 99.3 3.8E-12 8.1E-17 83.2 6.3 63 13-78 23-89 (254)
224 PRK13638 cbiO cobalt transport 99.3 1.1E-12 2.3E-17 86.5 3.7 66 13-78 21-87 (271)
225 COG1132 MdlB ABC-type multidru 99.3 4.8E-13 1.1E-17 95.8 2.2 69 13-82 349-417 (567)
226 PRK13651 cobalt transporter AT 99.3 1.1E-12 2.3E-17 87.9 3.7 41 11-51 25-65 (305)
227 PRK09544 znuC high-affinity zi 99.3 2E-12 4.3E-17 84.5 4.8 57 13-81 24-80 (251)
228 PRK10762 D-ribose transporter 99.3 4.9E-13 1.1E-17 94.6 2.0 67 11-77 270-336 (501)
229 PF03193 DUF258: Protein of un 99.3 1.7E-12 3.7E-17 79.4 4.1 64 19-84 35-102 (161)
230 PRK14242 phosphate transporter 99.3 1.6E-12 3.5E-17 84.8 4.3 69 13-81 26-100 (253)
231 PRK14235 phosphate transporter 99.3 1.7E-12 3.7E-17 85.4 4.3 69 13-81 39-113 (267)
232 PRK14259 phosphate ABC transpo 99.3 1.3E-12 2.9E-17 86.0 3.8 69 12-81 32-107 (269)
233 PRK14263 phosphate ABC transpo 99.3 2.3E-12 5E-17 84.6 4.9 69 13-81 28-102 (261)
234 PRK11701 phnK phosphonate C-P 99.3 1.5E-12 3.2E-17 85.3 3.9 66 13-78 26-99 (258)
235 PRK09580 sufC cysteine desulfu 99.3 1.8E-12 3.8E-17 84.3 4.2 69 13-81 21-91 (248)
236 TIGR01842 type_I_sec_PrtD type 99.3 1E-12 2.2E-17 93.8 3.3 69 13-82 338-406 (544)
237 PRK14253 phosphate ABC transpo 99.3 1.8E-12 3.8E-17 84.4 4.2 70 12-81 22-96 (249)
238 cd03288 ABCC_SUR2 The SUR doma 99.3 7.4E-13 1.6E-17 86.7 2.4 67 14-81 42-108 (257)
239 PRK14271 phosphate ABC transpo 99.3 2E-12 4.3E-17 85.5 4.4 69 13-81 41-114 (276)
240 PRK10744 pstB phosphate transp 99.3 2.4E-12 5.1E-17 84.4 4.7 69 13-81 33-107 (260)
241 PRK14249 phosphate ABC transpo 99.3 2.8E-12 6.2E-17 83.6 5.1 70 13-82 24-99 (251)
242 COG1101 PhnK ABC-type uncharac 99.3 4.9E-13 1.1E-17 84.8 1.3 83 12-98 25-107 (263)
243 TIGR03771 anch_rpt_ABC anchore 99.3 3.3E-12 7.1E-17 82.1 5.1 58 16-79 3-60 (223)
244 PRK14262 phosphate ABC transpo 99.3 2.9E-12 6.3E-17 83.5 4.9 70 12-81 22-97 (250)
245 PRK10419 nikE nickel transport 99.3 2.2E-12 4.8E-17 85.0 4.3 68 11-78 30-99 (268)
246 PRK13639 cbiO cobalt transport 99.3 1.5E-12 3.3E-17 86.0 3.6 66 13-78 22-88 (275)
247 COG4133 CcmA ABC-type transpor 99.3 8.1E-13 1.8E-17 82.1 2.1 83 14-103 23-105 (209)
248 COG4167 SapF ABC-type antimicr 99.3 1.1E-12 2.4E-17 81.8 2.7 76 3-79 23-98 (267)
249 PRK13636 cbiO cobalt transport 99.3 1.6E-12 3.4E-17 86.2 3.6 66 13-78 26-92 (283)
250 PRK14251 phosphate ABC transpo 99.3 2.9E-12 6.4E-17 83.5 4.8 69 13-81 24-98 (251)
251 PRK10261 glutathione transport 99.3 2E-12 4.4E-17 93.7 4.3 73 10-82 341-417 (623)
252 cd01853 Toc34_like Toc34-like 99.3 4.1E-11 9E-16 78.3 10.0 63 18-82 30-92 (249)
253 cd03289 ABCC_CFTR2 The CFTR su 99.3 1E-12 2.2E-17 86.9 2.4 69 11-81 22-90 (275)
254 PRK14248 phosphate ABC transpo 99.3 3.3E-12 7.3E-17 84.0 4.8 70 13-82 41-116 (268)
255 PRK15056 manganese/iron transp 99.3 2.1E-12 4.5E-17 85.2 3.8 63 13-79 27-89 (272)
256 TIGR01192 chvA glucan exporter 99.3 1.4E-12 3.1E-17 93.8 3.3 68 14-82 356-423 (585)
257 PRK11308 dppF dipeptide transp 99.3 2E-12 4.3E-17 87.4 3.8 70 9-78 31-102 (327)
258 PRK14261 phosphate ABC transpo 99.3 4.3E-12 9.2E-17 82.8 5.2 69 13-81 26-100 (253)
259 PRK14268 phosphate ABC transpo 99.3 3.5E-12 7.7E-17 83.5 4.8 69 13-81 32-106 (258)
260 TIGR01846 type_I_sec_HlyB type 99.3 9.2E-13 2E-17 96.3 2.2 68 14-82 478-545 (694)
261 TIGR03269 met_CoM_red_A2 methy 99.3 3.3E-12 7.1E-17 90.8 4.8 71 12-82 303-379 (520)
262 PRK14238 phosphate transporter 99.3 3.5E-12 7.6E-17 84.1 4.6 69 13-81 44-118 (271)
263 PRK14270 phosphate ABC transpo 99.3 4.1E-12 9E-17 82.8 4.8 69 13-81 24-98 (251)
264 COG4674 Uncharacterized ABC-ty 99.3 1.4E-13 3.1E-18 86.2 -2.0 90 6-100 18-108 (249)
265 PRK11288 araG L-arabinose tran 99.3 5.9E-13 1.3E-17 94.2 0.8 65 13-77 273-337 (501)
266 PRK14237 phosphate transporter 99.3 3.7E-12 8E-17 83.8 4.5 69 13-81 40-114 (267)
267 PRK00098 GTPase RsgA; Reviewed 99.3 8.4E-12 1.8E-16 83.4 6.3 63 18-82 163-229 (298)
268 PRK10261 glutathione transport 99.3 2.1E-12 4.6E-17 93.5 3.6 40 11-50 34-73 (623)
269 cd03291 ABCC_CFTR1 The CFTR su 99.3 5.7E-12 1.2E-16 83.6 5.4 55 13-81 57-111 (282)
270 PTZ00243 ABC transporter; Prov 99.3 1.1E-12 2.4E-17 102.4 2.2 68 14-82 1331-1398(1560)
271 PRK14240 phosphate transporter 99.3 4.4E-12 9.5E-17 82.6 4.7 69 13-81 23-97 (250)
272 PF02421 FeoB_N: Ferrous iron 99.3 2.2E-11 4.9E-16 74.3 7.5 61 21-84 2-62 (156)
273 PLN03232 ABC transporter C fam 99.3 1.2E-12 2.7E-17 101.9 2.1 68 14-82 1257-1324(1495)
274 PLN03130 ABC transporter C fam 99.3 1.7E-12 3.7E-17 101.6 2.8 69 13-82 1259-1327(1622)
275 PRK14254 phosphate ABC transpo 99.3 7.5E-12 1.6E-16 83.1 5.5 69 13-81 59-133 (285)
276 PLN03211 ABC transporter G-25; 99.3 4.6E-12 9.9E-17 92.3 4.8 74 15-98 90-165 (659)
277 TIGR01187 potA spermidine/putr 99.3 2.4E-12 5.2E-17 86.9 3.1 66 24-97 1-66 (325)
278 TIGR01257 rim_protein retinal- 99.3 4.2E-12 9.2E-17 100.7 4.7 81 12-99 1958-2038(2272)
279 TIGR02633 xylG D-xylose ABC tr 99.3 9.7E-13 2.1E-17 93.1 1.1 67 11-77 278-345 (500)
280 PRK14274 phosphate ABC transpo 99.3 4E-12 8.7E-17 83.3 3.9 69 14-82 33-107 (259)
281 cd03222 ABC_RNaseL_inhibitor T 99.3 4.6E-12 9.9E-17 78.9 3.9 38 15-52 21-58 (177)
282 PRK14275 phosphate ABC transpo 99.3 5.4E-12 1.2E-16 83.8 4.5 69 13-81 59-133 (286)
283 COG0488 Uup ATPase components 99.3 1.5E-11 3.3E-16 87.4 7.0 58 13-82 23-80 (530)
284 PRK14239 phosphate transporter 99.3 7.9E-12 1.7E-16 81.5 5.2 70 12-81 24-99 (252)
285 PRK15093 antimicrobial peptide 99.3 3.1E-12 6.7E-17 86.5 3.4 70 9-78 23-99 (330)
286 PRK09473 oppD oligopeptide tra 99.3 3.4E-12 7.4E-17 86.3 3.4 70 9-78 32-107 (330)
287 PRK14260 phosphate ABC transpo 99.3 7E-12 1.5E-16 82.2 4.6 70 12-81 26-101 (259)
288 PRK11819 putative ABC transpor 99.3 8.8E-12 1.9E-16 89.3 5.5 57 13-81 344-401 (556)
289 PRK13549 xylose transporter AT 99.3 1.6E-12 3.5E-17 92.1 1.7 67 11-77 280-347 (506)
290 PRK13546 teichoic acids export 99.3 1.4E-11 3E-16 81.1 5.9 38 12-49 43-80 (264)
291 TIGR00957 MRP_assoc_pro multi 99.3 2.7E-12 5.8E-17 100.2 2.8 69 13-82 1306-1374(1522)
292 PRK14257 phosphate ABC transpo 99.3 8.9E-12 1.9E-16 84.3 5.0 69 14-82 103-177 (329)
293 PRK10522 multidrug transporter 99.3 1.7E-12 3.6E-17 92.8 1.5 69 13-82 343-411 (547)
294 TIGR02323 CP_lyasePhnK phospho 99.3 6E-12 1.3E-16 82.1 4.0 40 12-51 22-61 (253)
295 cd01854 YjeQ_engC YjeQ/EngC. 99.3 1.7E-11 3.6E-16 81.6 6.1 62 19-82 161-226 (287)
296 PRK14252 phosphate ABC transpo 99.3 8.4E-12 1.8E-16 82.0 4.6 70 13-82 36-113 (265)
297 PRK14243 phosphate transporter 99.2 5.7E-12 1.2E-16 82.8 3.6 70 12-81 29-104 (264)
298 PRK15439 autoinducer 2 ABC tra 99.2 1.9E-12 4.1E-17 91.9 1.3 40 12-51 282-321 (510)
299 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 1.4E-11 3E-16 88.2 5.7 37 13-49 342-378 (552)
300 COG4175 ProV ABC-type proline/ 99.2 1.8E-12 4E-17 86.2 1.1 84 10-98 45-131 (386)
301 PRK14255 phosphate ABC transpo 99.2 1.4E-11 3E-16 80.4 5.2 69 13-81 25-99 (252)
302 PRK11022 dppD dipeptide transp 99.2 5E-12 1.1E-16 85.4 3.2 70 9-78 23-99 (326)
303 PRK14244 phosphate ABC transpo 99.2 8.7E-12 1.9E-16 81.3 4.2 71 12-82 24-100 (251)
304 PRK15134 microcin C ABC transp 99.2 7.2E-12 1.6E-16 89.3 4.1 80 10-95 303-386 (529)
305 COG4586 ABC-type uncharacteriz 99.2 3.9E-12 8.5E-17 83.2 2.5 50 5-54 36-85 (325)
306 PRK14236 phosphate transporter 99.2 1.1E-11 2.4E-16 81.8 4.6 69 13-81 45-119 (272)
307 PRK14265 phosphate ABC transpo 99.2 1.1E-11 2.4E-16 81.9 4.5 70 12-81 39-114 (274)
308 PRK14264 phosphate ABC transpo 99.2 1E-11 2.2E-16 83.2 4.3 69 13-81 65-139 (305)
309 PLN03140 ABC transporter G fam 99.2 1.4E-11 3E-16 95.9 5.5 79 13-100 185-266 (1470)
310 PRK15064 ABC transporter ATP-b 99.2 1.7E-11 3.6E-16 87.4 5.6 54 13-78 339-392 (530)
311 PTZ00265 multidrug resistance 99.2 3.1E-12 6.7E-17 99.4 1.9 34 12-45 1187-1220(1466)
312 PRK15134 microcin C ABC transp 99.2 1.1E-11 2.3E-16 88.4 4.5 68 11-78 27-102 (529)
313 PRK11147 ABC transporter ATPas 99.2 1.8E-11 3.8E-16 89.0 5.6 38 13-50 339-376 (635)
314 TIGR01257 rim_protein retinal- 99.2 9.4E-12 2E-16 98.8 4.4 80 13-99 950-1029(2272)
315 PRK14258 phosphate ABC transpo 99.2 2E-11 4.2E-16 80.2 5.2 70 12-81 26-101 (261)
316 COG1159 Era GTPase [General fu 99.2 7.9E-11 1.7E-15 77.7 7.8 61 20-82 7-67 (298)
317 PRK14266 phosphate ABC transpo 99.2 1.5E-11 3.3E-16 80.1 4.4 68 14-81 24-97 (250)
318 PRK14245 phosphate ABC transpo 99.2 1.5E-11 3.2E-16 80.2 4.3 69 13-81 23-97 (250)
319 cd01858 NGP_1 NGP-1. Autoanti 99.2 9E-11 2E-15 71.6 7.4 57 18-79 101-157 (157)
320 PTZ00265 multidrug resistance 99.2 3.7E-12 8E-17 99.0 1.2 79 12-97 404-483 (1466)
321 COG0396 sufC Cysteine desulfur 99.2 1.5E-11 3.2E-16 78.7 3.7 71 12-82 23-95 (251)
322 KOG0057 Mitochondrial Fe/S clu 99.2 8.2E-12 1.8E-16 87.8 2.7 68 13-82 372-439 (591)
323 COG4987 CydC ABC-type transpor 99.2 3.8E-12 8.2E-17 89.3 1.0 72 10-82 355-426 (573)
324 PRK10535 macrolide transporter 99.2 1.3E-11 2.9E-16 89.8 3.9 72 11-82 26-100 (648)
325 KOG0055 Multidrug/pheromone ex 99.2 4.6E-12 1E-16 95.6 1.5 70 12-82 372-441 (1228)
326 TIGR01271 CFTR_protein cystic 99.2 9.6E-12 2.1E-16 97.0 3.3 67 14-82 1240-1306(1490)
327 TIGR00955 3a01204 The Eye Pigm 99.2 1.3E-11 2.8E-16 89.5 3.6 81 11-100 43-126 (617)
328 PRK10938 putative molybdenum t 99.2 4.1E-12 8.9E-17 89.7 1.0 41 11-51 21-61 (490)
329 COG4136 ABC-type uncharacteriz 99.2 9E-12 1.9E-16 75.5 2.3 64 16-82 25-91 (213)
330 COG4604 CeuD ABC-type enteroch 99.2 1.1E-12 2.5E-17 82.3 -1.7 38 14-51 22-59 (252)
331 COG1162 Predicted GTPases [Gen 99.2 6E-11 1.3E-15 78.7 6.3 65 18-84 163-231 (301)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 2.3E-11 5E-16 73.4 4.0 38 13-50 20-57 (144)
333 TIGR00954 3a01203 Peroxysomal 99.2 4.7E-11 1E-15 87.1 6.2 57 14-82 473-529 (659)
334 COG1123 ATPase components of v 99.2 2.8E-11 6E-16 85.6 4.8 74 6-79 304-378 (539)
335 cd03236 ABC_RNaseL_inhibitor_d 99.2 2.3E-11 5.1E-16 79.7 4.1 35 16-50 23-57 (255)
336 PRK13409 putative ATPase RIL; 99.2 4.2E-11 9.1E-16 86.4 5.7 62 16-96 362-423 (590)
337 TIGR00993 3a0901s04IAP86 chlor 99.2 4.8E-10 1E-14 81.1 10.4 62 20-83 119-180 (763)
338 cd00267 ABC_ATPase ABC (ATP-bi 99.2 1.9E-11 4.1E-16 74.6 2.8 38 14-51 20-57 (157)
339 TIGR01194 cyc_pep_trnsptr cycl 99.2 6E-12 1.3E-16 90.1 0.6 69 14-83 363-431 (555)
340 COG4618 ArpD ABC-type protease 99.2 1.7E-11 3.7E-16 85.8 2.7 68 14-82 357-424 (580)
341 cd03214 ABC_Iron-Siderophores_ 99.2 4.1E-11 9E-16 74.7 4.2 38 13-50 19-56 (180)
342 TIGR00991 3a0901s02IAP34 GTP-b 99.2 5.4E-10 1.2E-14 74.8 9.6 63 18-82 37-99 (313)
343 TIGR00956 3a01205 Pleiotropic 99.2 4.4E-11 9.6E-16 92.9 4.9 74 15-98 785-861 (1394)
344 PRK10982 galactose/methyl gala 99.1 1.2E-11 2.5E-16 87.5 1.5 40 13-52 268-307 (491)
345 KOG0059 Lipid exporter ABCA1 a 99.1 1.1E-11 2.5E-16 92.7 1.4 90 8-102 580-669 (885)
346 PRK12289 GTPase RsgA; Reviewed 99.1 2.2E-10 4.7E-15 78.1 7.2 63 20-84 173-239 (352)
347 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.1 5.6E-11 1.2E-15 76.4 4.0 38 13-50 42-79 (224)
348 KOG0054 Multidrug resistance-a 99.1 8.6E-12 1.9E-16 95.6 0.2 69 14-83 1161-1229(1381)
349 KOG0061 Transporter, ABC super 99.1 9.6E-11 2.1E-15 84.8 5.5 79 14-101 51-132 (613)
350 TIGR00157 ribosome small subun 99.1 1.3E-10 2.7E-15 75.8 5.4 62 19-83 120-185 (245)
351 TIGR03269 met_CoM_red_A2 methy 99.1 3.1E-11 6.8E-16 85.9 2.6 39 12-50 19-59 (520)
352 TIGR00956 3a01205 Pleiotropic 99.1 5E-11 1.1E-15 92.6 3.9 78 14-98 82-163 (1394)
353 PRK12288 GTPase RsgA; Reviewed 99.1 2.1E-10 4.4E-15 78.2 6.3 63 20-84 206-272 (347)
354 PLN03232 ABC transporter C fam 99.1 2.1E-10 4.5E-15 89.8 6.8 57 13-82 637-693 (1495)
355 PRK10938 putative molybdenum t 99.1 2.2E-11 4.8E-16 86.1 0.9 68 12-79 279-347 (490)
356 cd04164 trmE TrmE (MnmE, ThdF, 99.1 9.1E-10 2E-14 66.2 7.8 62 19-82 1-62 (157)
357 PRK10636 putative ABC transpor 99.1 9.4E-11 2E-15 85.3 4.1 40 11-50 19-58 (638)
358 PRK13409 putative ATPase RIL; 99.1 1.1E-10 2.3E-15 84.3 4.2 37 15-51 95-131 (590)
359 KOG0055 Multidrug/pheromone ex 99.1 3.1E-11 6.7E-16 91.3 1.4 80 11-97 1008-1087(1228)
360 TIGR01271 CFTR_protein cystic 99.1 2.2E-10 4.7E-15 89.6 5.9 55 14-82 447-501 (1490)
361 TIGR00436 era GTP-binding prot 99.1 7E-10 1.5E-14 73.2 7.2 60 21-82 2-61 (270)
362 PLN03140 ABC transporter G fam 99.1 1.6E-10 3.4E-15 90.1 4.7 75 15-98 902-978 (1470)
363 PRK12298 obgE GTPase CgtA; Rev 99.1 1.5E-09 3.3E-14 75.0 9.1 60 21-82 161-220 (390)
364 COG1160 Predicted GTPases [Gen 99.1 8.3E-10 1.8E-14 76.5 7.7 61 20-82 4-64 (444)
365 PRK11147 ABC transporter ATPas 99.1 1.4E-10 3E-15 84.4 4.0 39 12-50 22-60 (635)
366 cd04104 p47_IIGP_like p47 (47- 99.1 8.3E-10 1.8E-14 69.7 7.1 63 20-82 2-65 (197)
367 PLN03073 ABC transporter F fam 99.1 1.9E-10 4.1E-15 84.6 4.5 38 13-50 529-566 (718)
368 PRK13545 tagH teichoic acids e 99.1 3.2E-10 7E-15 80.5 5.5 38 13-50 44-81 (549)
369 cd03238 ABC_UvrA The excision 99.1 1E-10 2.2E-15 72.8 2.7 35 7-41 9-43 (176)
370 PLN03130 ABC transporter C fam 99.1 2.1E-10 4.5E-15 90.2 4.9 56 13-82 637-693 (1622)
371 COG0488 Uup ATPase components 99.1 1.6E-10 3.5E-15 82.2 4.0 45 12-56 341-385 (530)
372 PRK00089 era GTPase Era; Revie 99.0 2.2E-09 4.8E-14 71.4 8.7 61 20-82 6-66 (292)
373 PRK10636 putative ABC transpor 99.0 2.3E-10 4.9E-15 83.3 4.2 38 13-50 332-369 (638)
374 TIGR00957 MRP_assoc_pro multi 99.0 3.4E-10 7.3E-15 88.7 5.2 55 14-82 659-713 (1522)
375 cd01898 Obg Obg subfamily. Th 99.0 2.3E-09 5E-14 65.5 7.7 59 21-81 2-60 (170)
376 PTZ00243 ABC transporter; Prov 99.0 8.4E-10 1.8E-14 86.7 6.9 54 14-81 681-734 (1560)
377 cd01896 DRG The developmentall 99.0 5E-09 1.1E-13 67.9 9.4 59 21-82 2-60 (233)
378 cd00820 PEPCK_HprK Phosphoenol 99.0 1.8E-10 3.8E-15 66.1 2.3 27 14-40 10-36 (107)
379 cd01130 VirB11-like_ATPase Typ 99.0 6.7E-10 1.4E-14 69.6 5.0 32 17-48 23-54 (186)
380 COG4608 AppF ABC-type oligopep 99.0 1.4E-10 3E-15 75.8 1.9 46 6-51 26-71 (268)
381 PRK12299 obgE GTPase CgtA; Rev 99.0 4.9E-09 1.1E-13 71.2 9.4 61 20-82 159-219 (335)
382 cd01855 YqeH YqeH. YqeH is an 99.0 1.1E-09 2.3E-14 68.8 5.8 58 19-79 127-190 (190)
383 cd01849 YlqF_related_GTPase Yl 99.0 2.1E-09 4.4E-14 65.5 6.7 57 18-79 99-155 (155)
384 COG4598 HisP ABC-type histidin 99.0 6.2E-11 1.3E-15 73.9 -0.1 80 9-93 22-113 (256)
385 COG1119 ModF ABC-type molybden 99.0 1.6E-10 3.4E-15 74.6 1.7 35 15-49 53-87 (257)
386 cd04163 Era Era subfamily. Er 99.0 4.3E-09 9.4E-14 63.5 8.0 61 20-82 4-64 (168)
387 cd03278 ABC_SMC_barmotin Barmo 99.0 3.1E-10 6.8E-15 71.8 2.9 32 14-46 18-49 (197)
388 COG4161 ArtP ABC-type arginine 99.0 1.1E-10 2.3E-15 71.7 0.7 80 9-93 18-102 (242)
389 PTZ00258 GTP-binding protein; 99.0 6.2E-09 1.3E-13 71.8 9.2 80 17-98 19-114 (390)
390 PRK09563 rbgA GTPase YlqF; Rev 99.0 1E-08 2.2E-13 68.3 9.8 64 18-86 120-183 (287)
391 cd01900 YchF YchF subfamily. 99.0 5.3E-09 1.1E-13 69.2 8.2 75 22-98 1-91 (274)
392 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 3.7E-09 8.1E-14 63.5 7.0 56 21-81 85-140 (141)
393 cd01881 Obg_like The Obg-like 99.0 2.1E-09 4.6E-14 65.9 6.0 55 24-81 1-56 (176)
394 COG0444 DppD ABC-type dipeptid 99.0 2.5E-10 5.3E-15 76.1 1.9 74 6-79 18-99 (316)
395 cd04178 Nucleostemin_like Nucl 99.0 4E-09 8.6E-14 65.5 6.9 55 20-79 118-172 (172)
396 cd01878 HflX HflX subfamily. 98.9 3.8E-09 8.3E-14 66.7 6.6 60 20-81 42-101 (204)
397 COG0486 ThdF Predicted GTPase 98.9 8.1E-09 1.8E-13 71.8 8.5 69 16-87 214-283 (454)
398 PRK09601 GTP-binding protein Y 98.9 1.2E-08 2.7E-13 69.7 9.2 77 20-98 3-95 (364)
399 TIGR03597 GTPase_YqeH ribosome 98.9 3.4E-09 7.4E-14 72.6 6.3 61 19-82 154-217 (360)
400 cd01850 CDC_Septin CDC/Septin. 98.9 3.1E-08 6.6E-13 65.7 10.3 64 20-83 5-77 (276)
401 KOG0065 Pleiotropic drug resis 98.9 1.5E-09 3.3E-14 82.8 4.6 77 17-100 815-891 (1391)
402 PRK12297 obgE GTPase CgtA; Rev 98.9 2E-08 4.3E-13 70.1 9.7 60 21-82 160-219 (424)
403 cd01876 YihA_EngB The YihA (En 98.9 5.1E-09 1.1E-13 63.4 6.0 55 22-82 2-58 (170)
404 PRK12296 obgE GTPase CgtA; Rev 98.9 1.5E-08 3.3E-13 71.8 9.1 60 20-82 160-219 (500)
405 COG4178 ABC-type uncharacteriz 98.9 4.3E-09 9.3E-14 75.6 6.1 60 11-82 411-470 (604)
406 cd01894 EngA1 EngA1 subfamily. 98.9 1.3E-08 2.7E-13 61.3 7.4 58 23-82 1-58 (157)
407 COG1123 ATPase components of v 98.9 9.3E-10 2E-14 78.0 2.7 72 8-79 24-102 (539)
408 TIGR03596 GTPase_YlqF ribosome 98.9 2.9E-08 6.2E-13 65.8 9.2 60 19-83 118-177 (276)
409 TIGR02729 Obg_CgtA Obg family 98.9 2.1E-08 4.6E-13 68.0 8.7 61 20-82 158-218 (329)
410 COG3596 Predicted GTPase [Gene 98.9 6.1E-09 1.3E-13 68.3 5.8 77 16-95 36-113 (296)
411 COG4107 PhnK ABC-type phosphon 98.9 2.4E-09 5.3E-14 66.6 3.6 39 12-50 25-63 (258)
412 cd00880 Era_like Era (E. coli 98.9 2.6E-08 5.6E-13 59.4 8.1 60 24-84 1-60 (163)
413 cd01851 GBP Guanylate-binding 98.9 2.9E-08 6.3E-13 64.0 8.5 66 19-84 7-75 (224)
414 cd01888 eIF2_gamma eIF2-gamma 98.9 8E-09 1.7E-13 65.5 5.8 23 21-43 2-24 (203)
415 PRK13796 GTPase YqeH; Provisio 98.9 1.4E-09 3.1E-14 74.5 2.5 62 18-82 159-223 (365)
416 TIGR03594 GTPase_EngA ribosome 98.8 2.2E-08 4.9E-13 69.8 8.4 59 21-81 1-59 (429)
417 cd04171 SelB SelB subfamily. 98.8 1.9E-08 4.2E-13 60.9 7.1 60 21-80 2-62 (164)
418 KOG0064 Peroxisomal long-chain 98.8 4.8E-09 1E-13 74.3 4.7 56 13-80 502-557 (728)
419 PRK09554 feoB ferrous iron tra 98.8 4.1E-08 8.8E-13 72.9 9.8 61 20-83 4-64 (772)
420 PRK15494 era GTPase Era; Provi 98.8 3.1E-08 6.6E-13 67.5 8.5 59 21-81 54-112 (339)
421 KOG0056 Heavy metal exporter H 98.8 2.2E-10 4.7E-15 80.6 -2.0 69 13-82 558-626 (790)
422 cd04160 Arfrp1 Arfrp1 subfamil 98.8 1.3E-08 2.9E-13 62.0 6.2 60 21-81 1-62 (167)
423 cd04155 Arl3 Arl3 subfamily. 98.8 1.3E-08 2.8E-13 62.5 6.1 27 17-43 12-38 (173)
424 TIGR00450 mnmE_trmE_thdF tRNA 98.8 3.1E-08 6.6E-13 69.6 8.6 64 17-82 201-264 (442)
425 PRK01889 GTPase RsgA; Reviewed 98.8 3.2E-09 6.9E-14 72.6 3.5 63 18-82 194-260 (356)
426 PF00735 Septin: Septin; Inte 98.8 4.1E-08 8.9E-13 65.3 8.7 78 20-98 5-91 (281)
427 PF13555 AAA_29: P-loop contai 98.8 5.2E-09 1.1E-13 54.3 3.5 26 19-44 23-48 (62)
428 cd01856 YlqF YlqF. Proteins o 98.8 3.3E-08 7.3E-13 61.1 7.6 58 18-80 114-171 (171)
429 PRK00454 engB GTP-binding prot 98.8 3.5E-08 7.6E-13 61.7 7.8 58 18-81 23-82 (196)
430 PLN03073 ABC transporter F fam 98.8 4.4E-09 9.6E-14 77.5 4.1 31 13-43 197-227 (718)
431 TIGR03598 GTPase_YsxC ribosome 98.8 3.9E-08 8.5E-13 61.1 7.7 60 17-81 16-76 (179)
432 COG0218 Predicted GTPase [Gene 98.8 3.5E-08 7.6E-13 62.1 7.4 64 15-83 20-84 (200)
433 cd01897 NOG NOG1 is a nucleola 98.8 3E-08 6.4E-13 60.5 7.0 58 21-81 2-59 (168)
434 KOG1489 Predicted GTP-binding 98.8 1.5E-08 3.3E-13 67.7 5.7 80 19-100 196-275 (366)
435 cd01895 EngA2 EngA2 subfamily. 98.8 4.4E-08 9.6E-13 59.6 7.4 61 20-82 3-63 (174)
436 COG0370 FeoB Fe2+ transport sy 98.8 5.7E-08 1.2E-12 70.3 8.8 62 20-84 4-65 (653)
437 COG4138 BtuD ABC-type cobalami 98.8 1.1E-08 2.3E-13 63.8 4.3 37 12-48 18-54 (248)
438 PF05049 IIGP: Interferon-indu 98.8 9.3E-09 2E-13 70.5 4.5 63 20-82 36-99 (376)
439 TIGR03156 GTP_HflX GTP-binding 98.8 3.8E-08 8.2E-13 67.3 7.2 60 19-80 189-248 (351)
440 cd04159 Arl10_like Arl10-like 98.8 4.9E-08 1.1E-12 58.5 7.0 54 22-80 2-55 (159)
441 cd01879 FeoB Ferrous iron tran 98.8 2.4E-08 5.2E-13 60.2 5.5 56 24-82 1-56 (158)
442 COG1161 Predicted GTPases [Gen 98.8 6.3E-08 1.4E-12 65.5 7.9 63 19-86 132-194 (322)
443 TIGR00231 small_GTP small GTP- 98.7 1.2E-07 2.6E-12 56.5 8.2 60 20-82 2-63 (161)
444 PRK04213 GTP-binding protein; 98.7 1.9E-07 4E-12 58.8 9.4 57 18-81 8-64 (201)
445 PRK00093 GTP-binding protein D 98.7 6E-08 1.3E-12 67.8 7.6 60 20-81 2-61 (435)
446 COG4615 PvdE ABC-type sideroph 98.7 8E-09 1.7E-13 71.1 3.1 45 15-59 345-389 (546)
447 cd03274 ABC_SMC4_euk Eukaryoti 98.7 8.7E-09 1.9E-13 65.9 3.1 21 20-40 26-46 (212)
448 PRK05291 trmE tRNA modificatio 98.7 6.7E-08 1.5E-12 68.0 7.8 63 18-82 214-276 (449)
449 PRK11058 GTPase HflX; Provisio 98.7 3.9E-08 8.5E-13 68.8 6.5 60 20-81 198-257 (426)
450 PRK10078 ribose 1,5-bisphospho 98.7 1.2E-08 2.6E-13 63.9 3.6 27 19-45 2-28 (186)
451 cd03272 ABC_SMC3_euk Eukaryoti 98.7 5.5E-09 1.2E-13 67.8 2.1 24 19-42 23-46 (243)
452 KOG0927 Predicted transporter 98.7 7.9E-09 1.7E-13 73.1 2.8 41 15-55 412-452 (614)
453 PRK00093 GTP-binding protein D 98.7 2E-07 4.3E-12 65.2 9.7 63 18-82 172-234 (435)
454 TIGR00235 udk uridine kinase. 98.7 9.6E-09 2.1E-13 65.3 2.8 30 16-45 3-32 (207)
455 cd03279 ABC_sbcCD SbcCD and ot 98.7 1.1E-08 2.4E-13 65.4 3.0 25 18-42 27-51 (213)
456 KOG0054 Multidrug resistance-a 98.7 1.1E-08 2.4E-13 79.0 3.4 57 12-82 540-596 (1381)
457 cd03283 ABC_MutS-like MutS-lik 98.7 1.3E-08 2.8E-13 64.6 3.1 27 17-43 23-49 (199)
458 COG1084 Predicted GTPase [Gene 98.7 1E-07 2.2E-12 64.0 7.3 62 18-82 167-228 (346)
459 COG1160 Predicted GTPases [Gen 98.7 7.1E-08 1.5E-12 67.1 6.8 63 18-82 177-239 (444)
460 cd01886 EF-G Elongation factor 98.7 9.6E-08 2.1E-12 63.2 7.2 61 21-82 1-77 (270)
461 cd00154 Rab Rab family. Rab G 98.7 8.4E-08 1.8E-12 57.4 6.4 58 21-80 2-60 (159)
462 COG0536 Obg Predicted GTPase [ 98.7 4.6E-08 1E-12 66.0 5.7 80 20-101 160-239 (369)
463 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 1.1E-07 2.4E-12 57.9 6.9 59 21-81 2-62 (168)
464 PF10662 PduV-EutP: Ethanolami 98.7 3E-08 6.5E-13 59.7 4.2 25 20-44 2-26 (143)
465 KOG1191 Mitochondrial GTPase [ 98.7 3.3E-08 7.2E-13 69.2 5.0 66 13-81 262-328 (531)
466 cd03270 ABC_UvrA_I The excisio 98.7 2.3E-08 5E-13 64.5 3.9 35 5-39 7-42 (226)
467 COG4172 ABC-type uncharacteriz 98.7 1.4E-08 3.1E-13 70.1 3.0 70 9-79 303-374 (534)
468 PRK09825 idnK D-gluconate kina 98.7 1.8E-08 3.9E-13 62.8 3.2 28 18-45 2-29 (176)
469 PRK03003 GTP-binding protein D 98.7 1.3E-07 2.9E-12 66.9 7.9 60 20-81 39-98 (472)
470 cd00881 GTP_translation_factor 98.7 5.1E-08 1.1E-12 60.3 5.1 60 21-81 1-74 (189)
471 COG4778 PhnL ABC-type phosphon 98.7 1.8E-08 3.8E-13 62.5 2.9 41 9-49 27-67 (235)
472 TIGR00554 panK_bact pantothena 98.7 6.4E-09 1.4E-13 69.3 1.1 27 18-44 61-87 (290)
473 COG5019 CDC3 Septin family pro 98.7 1.8E-07 3.9E-12 63.6 7.9 80 18-98 22-110 (373)
474 TIGR03238 dnd_assoc_3 dnd syst 98.7 2.1E-08 4.6E-13 70.5 3.6 36 11-48 24-59 (504)
475 PRK09270 nucleoside triphospha 98.7 2.1E-08 4.5E-13 64.8 3.2 34 16-49 30-63 (229)
476 cd03273 ABC_SMC2_euk Eukaryoti 98.7 1.7E-08 3.8E-13 65.9 2.9 28 19-46 25-52 (251)
477 KOG1423 Ras-like GTPase ERA [C 98.7 1.5E-07 3.2E-12 62.9 7.1 64 18-83 71-134 (379)
478 cd00879 Sar1 Sar1 subfamily. 98.7 1.6E-07 3.4E-12 58.6 7.0 56 19-80 19-74 (190)
479 cd01861 Rab6 Rab6 subfamily. 98.6 1.6E-07 3.5E-12 56.8 6.8 58 21-80 2-60 (161)
480 cd04119 RJL RJL (RabJ-Like) su 98.6 1.8E-07 3.9E-12 56.8 7.0 58 21-80 2-60 (168)
481 cd01860 Rab5_related Rab5-rela 98.6 1.7E-07 3.7E-12 56.8 6.8 59 20-80 2-61 (163)
482 PRK09602 translation-associate 98.6 4.2E-07 9E-12 63.1 9.3 25 20-44 2-26 (396)
483 smart00175 RAB Rab subfamily o 98.6 1.8E-07 3.9E-12 56.7 6.7 58 21-80 2-60 (164)
484 cd04154 Arl2 Arl2 subfamily. 98.6 2.1E-07 4.6E-12 57.3 7.0 56 19-80 14-69 (173)
485 cd04166 CysN_ATPS CysN_ATPS su 98.6 7.7E-08 1.7E-12 61.3 5.1 60 21-81 1-89 (208)
486 TIGR03263 guanyl_kin guanylate 98.6 4E-08 8.7E-13 61.0 3.6 26 19-44 1-26 (180)
487 cd04168 TetM_like Tet(M)-like 98.6 2.6E-07 5.7E-12 60.1 7.5 61 21-82 1-77 (237)
488 cd01862 Rab7 Rab7 subfamily. 98.6 2.3E-07 5.1E-12 56.7 6.9 23 21-43 2-24 (172)
489 cd01863 Rab18 Rab18 subfamily. 98.6 2.4E-07 5.2E-12 56.1 6.9 24 21-44 2-25 (161)
490 cd01859 MJ1464 MJ1464. This f 98.6 3.5E-07 7.5E-12 55.6 7.6 57 18-79 100-156 (156)
491 KOG0060 Long-chain acyl-CoA tr 98.6 7.6E-08 1.6E-12 68.8 5.1 37 13-49 455-491 (659)
492 cd04170 EF-G_bact Elongation f 98.6 1.5E-07 3.3E-12 62.1 6.3 60 21-81 1-76 (268)
493 PRK00300 gmk guanylate kinase; 98.6 4.1E-08 9E-13 62.1 3.5 28 17-44 3-30 (205)
494 cd04113 Rab4 Rab4 subfamily. 98.6 2.3E-07 5.1E-12 56.2 6.6 24 21-44 2-25 (161)
495 cd01866 Rab2 Rab2 subfamily. 98.6 2.7E-07 5.9E-12 56.6 6.9 25 20-44 5-29 (168)
496 PRK03003 GTP-binding protein D 98.6 2.2E-07 4.7E-12 65.8 7.1 61 18-80 210-270 (472)
497 PRK15467 ethanolamine utilizat 98.6 1.3E-07 2.9E-12 57.8 5.1 24 20-43 2-25 (158)
498 KOG1547 Septin CDC10 and relat 98.6 3.1E-07 6.6E-12 59.7 6.8 82 16-98 43-132 (336)
499 KOG2655 Septin family protein 98.6 2.7E-07 6E-12 62.9 6.9 65 19-83 21-93 (366)
500 cd04169 RF3 RF3 subfamily. Pe 98.6 1.4E-07 3E-12 62.3 5.4 62 20-82 3-84 (267)
No 1
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.8e-17 Score=111.33 Aligned_cols=83 Identities=17% Similarity=0.065 Sum_probs=67.0
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.........|+.++|+||||||||||||+|+|++.+++|.+..+........ ..++.+++|+|...+|++ ++
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~---P~~R~iamVFQ~yALyPh-----mt 91 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP---PEKRGIAMVFQNYALYPH-----MT 91 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhHCCEEEEeCCccccCC-----Cc
Confidence 3445566678999999999999999999999999999997665555444322 236789999999999999 89
Q ss_pred HHHHHHHhhcc
Q 038901 90 GKEIVKCLGMA 100 (107)
Q Consensus 90 ~~~~~~~~~~~ 100 (107)
+.+++.|-.+.
T Consensus 92 V~~Niaf~Lk~ 102 (338)
T COG3839 92 VYENIAFGLKL 102 (338)
T ss_pred HHHHhhhhhhh
Confidence 99998876554
No 2
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=1.5e-17 Score=110.58 Aligned_cols=88 Identities=13% Similarity=0.003 Sum_probs=67.8
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
........+|++++|+||||||||||||+|+|+..+++|.+...+...... ... .+++++|++|.|.+++. +|
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~-~~~~igy~~~~~~~~~~-----lT 94 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAK-VRRRIGYVPQEPSLYPE-----LT 94 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHH-HHhheEEEccCCCCCcc-----cc
Confidence 344455667899999999999999999999999999988654433222111 111 25679999999999988 99
Q ss_pred HHHHHHHhhccCCCC
Q 038901 90 GKEIVKCLGMAKDGI 104 (107)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (107)
++|++.+++.++..+
T Consensus 95 ~~e~l~~~~~l~~~~ 109 (293)
T COG1131 95 VRENLEFFARLYGLS 109 (293)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999998887643
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=4.9e-17 Score=109.69 Aligned_cols=84 Identities=17% Similarity=0.035 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
......+...+|+.+.|+|||||||||||++|+|+..+++|.+..++....... ..++.+++|+|...+|++
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp---p~kR~ig~VFQ~YALFPH----- 91 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP---PEKRPIGMVFQSYALFPH----- 91 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhhcccceeecCcccCCC-----
Confidence 444566677889999999999999999999999999999997766666554433 246889999999999999
Q ss_pred HHHHHHHHHhhc
Q 038901 88 FVGKEIVKCLGM 99 (107)
Q Consensus 88 ~~~~~~~~~~~~ 99 (107)
+++.+++.|-..
T Consensus 92 ltV~~NVafGLk 103 (352)
T COG3842 92 MTVEENVAFGLK 103 (352)
T ss_pred CcHHHHhhhhhh
Confidence 899999877655
No 4
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.66 E-value=4.2e-16 Score=99.47 Aligned_cols=85 Identities=46% Similarity=0.803 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~~ 100 (107)
+|.|+|++||||||++|.|+|...+..+......+..+......+ ....+.|+||||+++.....+...+++.+++..+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 689999999999999999999998777644445555555555544 7788999999999887666677788889988888
Q ss_pred CCCCCC
Q 038901 101 KDGIHA 106 (107)
Q Consensus 101 ~~~~~~ 106 (107)
.++||+
T Consensus 81 ~~g~ha 86 (212)
T PF04548_consen 81 SPGPHA 86 (212)
T ss_dssp TT-ESE
T ss_pred cCCCeE
Confidence 888885
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=3e-17 Score=103.60 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=62.1
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
.........+|++++|+||||||||||++||.++..+++|.+...+............+++.++|+|...+|++ +
T Consensus 18 Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH-----l 92 (240)
T COG1126 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH-----L 92 (240)
T ss_pred ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccccccc-----c
Confidence 34455667788999999999999999999999999999996554443221111222235789999999999998 7
Q ss_pred HHHHHHHH
Q 038901 89 VGKEIVKC 96 (107)
Q Consensus 89 ~~~~~~~~ 96 (107)
++.+++..
T Consensus 93 TvleNv~l 100 (240)
T COG1126 93 TVLENVTL 100 (240)
T ss_pred hHHHHHHh
Confidence 77776544
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=5.7e-17 Score=103.61 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=66.4
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+..........++|+.++|+||||||||||+|+|.++..|++|.+...+....... ...+.++.+++|+|...+.+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 44556667778889999999999999999999999999999886444443222111 122335789999999999988
Q ss_pred CCCchHHHHHHHHHh
Q 038901 83 SAGSEFVGKEIVKCL 97 (107)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (107)
+++.|++...
T Consensus 98 -----ltv~ENv~lp 107 (226)
T COG1136 98 -----LTVLENVELP 107 (226)
T ss_pred -----CCHHHHHHhH
Confidence 8888888753
No 7
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=7.8e-17 Score=102.46 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=70.9
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
++..+.......+|++++|+|+||+|||||+++|+|+.++.+|.+...+............+.-+.++++...+|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~--- 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR--- 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh---
Confidence 34556667778889999999999999999999999999999887666665555544444445679999999999988
Q ss_pred chHHHHHHHHHhh
Q 038901 86 SEFVGKEIVKCLG 98 (107)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (107)
+|++|++..-.
T Consensus 93 --LTVeENL~~g~ 103 (237)
T COG0410 93 --LTVEENLLLGA 103 (237)
T ss_pred --CcHHHHHhhhh
Confidence 99999987643
No 8
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=3.7e-15 Score=93.96 Aligned_cols=85 Identities=55% Similarity=0.908 Sum_probs=62.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~~ 100 (107)
+|+|+|++|+|||||+|+|+|...+..+....+.+..+......+ ....+.++||||+.+.....+....++..++..+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 689999999999999999999877665543344555555454444 5678899999999987544445566777777766
Q ss_pred CCCCCC
Q 038901 101 KDGIHA 106 (107)
Q Consensus 101 ~~~~~~ 106 (107)
.+++|+
T Consensus 81 ~~g~~~ 86 (196)
T cd01852 81 APGPHA 86 (196)
T ss_pred CCCCEE
Confidence 666653
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.4e-16 Score=100.66 Aligned_cols=79 Identities=15% Similarity=-0.007 Sum_probs=59.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
..+......+|+.++|+||||||||||+|+|+|+..++.|.+...+... .-.....++++|.+.+++- .
T Consensus 19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v------~~p~~~~~~vFQ~~~LlPW-----~ 87 (248)
T COG1116 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV------TGPGPDIGYVFQEDALLPW-----L 87 (248)
T ss_pred eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc------CCCCCCEEEEeccCcccch-----h
Confidence 3445566778899999999999999999999999999998644333221 1125678999999999887 6
Q ss_pred HHHHHHHHhh
Q 038901 89 VGKEIVKCLG 98 (107)
Q Consensus 89 ~~~~~~~~~~ 98 (107)
|+.+++.+..
T Consensus 88 Tv~~NV~l~l 97 (248)
T COG1116 88 TVLDNVALGL 97 (248)
T ss_pred hHHhhheehh
Confidence 7777665543
No 10
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.7e-16 Score=103.05 Aligned_cols=85 Identities=19% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
........|+.++|+||||||||||+++|+|++.++.|.+..+..............+++++|+|...++.+ +++
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H-----mtV 94 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH-----MTV 94 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc-----chH
Confidence 445555678999999999999999999999999999997665555333323233346789999999999998 899
Q ss_pred HHHHHHhhcc
Q 038901 91 KEIVKCLGMA 100 (107)
Q Consensus 91 ~~~~~~~~~~ 100 (107)
.+++.|-...
T Consensus 95 a~NIAFGl~~ 104 (345)
T COG1118 95 ADNIAFGLKV 104 (345)
T ss_pred Hhhhhhcccc
Confidence 9998886644
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.62 E-value=9.7e-17 Score=104.32 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=51.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|++++|+||||||||||+++|+|+..+..|.+...+.........+. .+..+|++|.+.....
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kel-Ak~ia~vpQ~~~~~~~ 90 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL-AKKLAYVPQSPSAPFG 90 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHH-hhhEEEeccCCCCCCC
Confidence 34455689999999999999999999999999999876655554443333332 5678999998755544
No 12
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=5e-17 Score=104.06 Aligned_cols=85 Identities=15% Similarity=0.023 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
..........+|++++||||||||||||+|+|+|.+.|+.|.+...+............+.-++.-||.+-++..
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~----- 93 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG----- 93 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC-----
Confidence 444556677889999999999999999999999999999996655444433333333334567888999999887
Q ss_pred HHHHHHHHHh
Q 038901 88 FVGKEIVKCL 97 (107)
Q Consensus 88 ~~~~~~~~~~ 97 (107)
+++.|++...
T Consensus 94 lTVlENv~va 103 (250)
T COG0411 94 LTVLENVAVG 103 (250)
T ss_pred CcHHHHHHHH
Confidence 8888887654
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=4.1e-16 Score=100.75 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|+.++|+|||||||||+++.|.++..+++|.+...+.........+. ++.++|++|.-+++++ +++
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFPh-----~Tv 92 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFPH-----LTV 92 (309)
T ss_pred eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCCC-----ccH
Confidence 3344556789999999999999999999999999999977766666555444444 6889999999999998 888
Q ss_pred HHHHHHhhc
Q 038901 91 KEIVKCLGM 99 (107)
Q Consensus 91 ~~~~~~~~~ 99 (107)
.+++..+-.
T Consensus 93 ~eNIa~VP~ 101 (309)
T COG1125 93 AENIATVPK 101 (309)
T ss_pred HHHHHhhhh
Confidence 888766543
No 14
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.5e-16 Score=97.61 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=70.0
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
++..++...+.++|++++|+|+|||||||+++.|..++.|+.|.+....-.... .... .+++++.++..-+++..
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~-vrr~IGVl~~e~glY~R--- 89 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSF-VRRKIGVLFGERGLYAR--- 89 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHH-HhhhcceecCCcChhhh---
Confidence 345667788889999999999999999999999999999999954432222211 2222 25788999998899887
Q ss_pred chHHHHHHHHHhhccCC
Q 038901 86 SEFVGKEIVKCLGMAKD 102 (107)
Q Consensus 86 ~~~~~~~~~~~~~~~~~ 102 (107)
++.+|++.++...+.
T Consensus 90 --lT~rEnl~~Fa~L~~ 104 (245)
T COG4555 90 --LTARENLKYFARLNG 104 (245)
T ss_pred --hhHHHHHHHHHHHhh
Confidence 999999999887653
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.57 E-value=2.7e-15 Score=100.40 Aligned_cols=83 Identities=20% Similarity=0.064 Sum_probs=60.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .++.+++++|.+.+++. .++
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~-~~~~ig~v~q~~~~~~~-----~tv 97 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RH-ARQRVGVVPQFDNLDPD-----FTV 97 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HH-HHhcEEEEeccCcCCCC-----CcH
Confidence 344555678999999999999999999999999999885443332211111 11 24679999999999876 677
Q ss_pred HHHHHHhhcc
Q 038901 91 KEIVKCLGMA 100 (107)
Q Consensus 91 ~~~~~~~~~~ 100 (107)
.+++.+....
T Consensus 98 ~e~l~~~~~~ 107 (306)
T PRK13537 98 RENLLVFGRY 107 (306)
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 16
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.55 E-value=4.1e-15 Score=95.21 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+................+..+++++|.+.+++. .+..+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~~~ 94 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE-----LTVEE 94 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC-----CcHHH
Confidence 3455678999999999999999999999999998885443332111111101113458899999988765 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 95 ~l~~ 98 (222)
T cd03224 95 NLLL 98 (222)
T ss_pred HHHH
Confidence 5543
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.55 E-value=6e-15 Score=99.96 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .+..+++++|.+.+++. .++.+
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~-~~~~ig~v~q~~~~~~~-----~tv~e 133 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RL-ARARIGVVPQFDNLDLE-----FTVRE 133 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HH-HhccEEEEeCCccCCCC-----CcHHH
Confidence 3455678999999999999999999999999999885543332211111 11 24678999999998876 67777
Q ss_pred HHHHhhc
Q 038901 93 IVKCLGM 99 (107)
Q Consensus 93 ~~~~~~~ 99 (107)
++.++..
T Consensus 134 ~l~~~~~ 140 (340)
T PRK13536 134 NLLVFGR 140 (340)
T ss_pred HHHHHHH
Confidence 7765443
No 18
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=1.8e-15 Score=97.32 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
.........++|++++++|+|||||||++++|+|++.++.|.+...+..... . ..++++|++..-|+++.
T Consensus 17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~-~~~rIGyLPEERGLy~k----- 86 (300)
T COG4152 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----E-IKNRIGYLPEERGLYPK----- 86 (300)
T ss_pred eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----h-hhhhcccChhhhccCcc-----
Confidence 4556677788899999999999999999999999999999865544433221 1 24789999999999987
Q ss_pred HHHHHHHHHhhccCCCC
Q 038901 88 FVGKEIVKCLGMAKDGI 104 (107)
Q Consensus 88 ~~~~~~~~~~~~~~~~~ 104 (107)
+++.+-+.|++.....|
T Consensus 87 ~tv~dql~yla~LkGm~ 103 (300)
T COG4152 87 MTVEDQLKYLAELKGMP 103 (300)
T ss_pred CcHHHHHHHHHHhcCCc
Confidence 88888888887765544
No 19
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.55 E-value=4.1e-15 Score=96.04 Aligned_cols=80 Identities=16% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+................+..+++++|.+.+++. .++.
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv~ 93 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE-----LTVL 93 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC-----CCHH
Confidence 34455678999999999999999999999999988885443332211111001112457899999988765 4555
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 94 ~~l~~ 98 (236)
T cd03219 94 ENVMV 98 (236)
T ss_pred HHHHH
Confidence 55544
No 20
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=2.2e-15 Score=93.29 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=58.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
......+++++|+||||||||||+|.|+|+..|.+|.+............ .++...+++|.-.+|.+ .++++
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSmlFQEnNLFaH-----LtV~q 90 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSMLFQENNLFAH-----LTVAQ 90 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhhhhhccccchh-----hhhhh
Confidence 44566789999999999999999999999999999965544443332222 25678899999999987 77777
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 91 NigL 94 (231)
T COG3840 91 NIGL 94 (231)
T ss_pred hhcc
Confidence 7543
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.54 E-value=6.8e-15 Score=100.14 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+........... ..++.+++++|.+.+++. +++.+
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~---~~~r~ig~v~Q~~~lfp~-----~tv~e 95 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP---PQKRDYGIVFQSYALFPN-----LTVAD 95 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCC-----CcHHH
Confidence 4445678999999999999999999999999999886554433221111 124679999999999987 67777
Q ss_pred HHHHhh
Q 038901 93 IVKCLG 98 (107)
Q Consensus 93 ~~~~~~ 98 (107)
++.+..
T Consensus 96 Ni~~~~ 101 (353)
T TIGR03265 96 NIAYGL 101 (353)
T ss_pred HHHHHH
Confidence 776643
No 22
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.54 E-value=8.1e-15 Score=94.44 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..+.+|.+...+............+...++++|.+.+++. .++
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv 92 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK-----LTV 92 (232)
T ss_pred cceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc-----CcH
Confidence 334455678999999999999999999999999998885443332211111101112457899999888765 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 93 ~~~l~~ 98 (232)
T cd03218 93 EENILA 98 (232)
T ss_pred HHHHHH
Confidence 555544
No 23
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.2e-15 Score=100.74 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=67.4
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~ 83 (107)
+...........+|++++|||.||||||||+++|.++..|++|.+...+.......... ..++++++++|.+.+...
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss- 97 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS- 97 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc-
Confidence 34455566777889999999999999999999999999999997655554333222211 125789999999999987
Q ss_pred CCchHHHHHHHHHhhcc
Q 038901 84 AGSEFVGKEIVKCLGMA 100 (107)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (107)
.|+.+++.+-...
T Consensus 98 ----rTV~~NvA~PLei 110 (339)
T COG1135 98 ----RTVFENVAFPLEL 110 (339)
T ss_pred ----chHHhhhhhhHhh
Confidence 6777777665443
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=6.6e-15 Score=100.30 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+||||||||||+++|+|+..+++|.+........... ..++.++|++|.+.+++. +++.
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~v~Q~~~lfp~-----~tv~ 94 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE---PADRDIAMVFQNYALYPH-----MSVR 94 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCccccCC-----CCHH
Confidence 34455678999999999999999999999999999886544333221111 123679999999999987 6777
Q ss_pred HHHHHh
Q 038901 92 EIVKCL 97 (107)
Q Consensus 92 ~~~~~~ 97 (107)
+++.+.
T Consensus 95 eNi~~~ 100 (356)
T PRK11650 95 ENMAYG 100 (356)
T ss_pred HHHHhH
Confidence 777654
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=4.7e-15 Score=99.04 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+||||||||||+++|+|+..+++|.+...+..... ....+ +..+++++|.+.+++. .++.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~-~~~i~~~~q~~~~~~~-----~tv~ 84 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKV-RRSIGIVPQYASVDED-----LTGR 84 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHH-HhhcEEecCCCCCCCC-----CcHH
Confidence 344556889999999999999999999999999998865433322111 10111 3568899999988876 6677
Q ss_pred HHHHHhh
Q 038901 92 EIVKCLG 98 (107)
Q Consensus 92 ~~~~~~~ 98 (107)
+++.+..
T Consensus 85 e~l~~~~ 91 (302)
T TIGR01188 85 ENLEMMG 91 (302)
T ss_pred HHHHHHH
Confidence 7766543
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.2e-15 Score=99.68 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+||||||||||+++|+|+..+++|.+.......... ...++.+++++|.+.+++. +++.
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~vfQ~~~lfp~-----~tv~ 96 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR---SIQQRDICMVFQSYALFPH-----MSLG 96 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---CHHHCCEEEEeCCcccCCC-----CCHH
Confidence 4455567899999999999999999999999999998654433322111 1124679999999999887 6677
Q ss_pred HHHHHh
Q 038901 92 EIVKCL 97 (107)
Q Consensus 92 ~~~~~~ 97 (107)
+++.+.
T Consensus 97 eNi~~~ 102 (351)
T PRK11432 97 ENVGYG 102 (351)
T ss_pred HHHHHH
Confidence 777654
No 27
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=6.8e-15 Score=95.02 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+............ ....+..+++++|.+.+++. .++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv 94 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS-----LTV 94 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC-----CcH
Confidence 44556889999999999999999999999999988854433322111100 01113568899999888765 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 95 ~~~l~~ 100 (235)
T cd03261 95 FENVAF 100 (235)
T ss_pred HHHHHH
Confidence 555544
No 28
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.53 E-value=9.7e-15 Score=93.28 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+............ ..+.++..++++|.+.++.. .+
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t 98 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD-----LT 98 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC-----Cc
Confidence 44556789999999999999999999999999988854433322111110 00113468899999988765 45
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 99 v~e~l~~ 105 (218)
T cd03255 99 ALENVEL 105 (218)
T ss_pred HHHHHHH
Confidence 5555443
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.3e-14 Score=94.15 Aligned_cols=82 Identities=16% Similarity=-0.005 Sum_probs=53.4
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
.........+|+.++|+||||||||||+++|+|+..+..|.+......... ...+.+++||+|...+... --.
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~----~~~~~~IgYVPQ~~~~d~~---fP~ 92 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK----RRKRLRIGYVPQKSSVDRS---FPI 92 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccc----cccCCeEEEcCcccccCCC---CCc
Confidence 344455566789999999999999999999999999998854432221111 1113678999996533211 014
Q ss_pred HHHHHHHHh
Q 038901 89 VGKEIVKCL 97 (107)
Q Consensus 89 ~~~~~~~~~ 97 (107)
++++++..-
T Consensus 93 tV~d~V~~g 101 (254)
T COG1121 93 TVKDVVLLG 101 (254)
T ss_pred CHHHHHHcc
Confidence 556655543
No 30
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.52 E-value=8.6e-15 Score=94.23 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+.+|.+....................++++|.+.+++. .+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~ 93 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR-----LTVE 93 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC-----CcHH
Confidence 34455678999999999999999999999999998885443322111111101113468899999988765 4555
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 94 ~~l~~ 98 (230)
T TIGR03410 94 ENLLT 98 (230)
T ss_pred HHHHH
Confidence 55543
No 31
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.4e-14 Score=94.03 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...+|++|.|.++.. .++.+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~-----~tv~e 94 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE-LRRKIGYVIQQIGLFPH-----MTVEE 94 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH-hhcceEEEccCccccCC-----CcHHH
Confidence 4455688999999999999999999999999998885443332211111111 13467899999988765 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 95 ~l~~ 98 (242)
T cd03295 95 NIAL 98 (242)
T ss_pred HHHH
Confidence 5543
No 32
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.52 E-value=1.7e-14 Score=92.32 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+++|.+.......... ... ..+..++++|.+.++.. .++.
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~-~~~~i~~v~q~~~~~~~-----~tv~ 93 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKA-ARQSLGYCPQFDALFDE-----LTVR 93 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHH-HhhhEEEecCcCCcccc-----CCHH
Confidence 3445567899999999999999999999999999888544332221111 111 13568899999888754 4555
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 94 ~~l~~ 98 (220)
T cd03263 94 EHLRF 98 (220)
T ss_pred HHHHH
Confidence 55544
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.51 E-value=2e-14 Score=97.92 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+.......... ...++.++|++|.+.+++. +++.+
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---~~~~r~i~~v~Q~~~l~p~-----~tv~e 93 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---HARDRKVGFVFQHYALFRH-----MTVFD 93 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CHHHCCEEEEecCcccCCC-----CcHHH
Confidence 344567899999999999999999999999999988554333222111 1123578999999999876 66777
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 94 ni~~~ 98 (353)
T PRK10851 94 NIAFG 98 (353)
T ss_pred HHHhh
Confidence 77654
No 34
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.51 E-value=1.5e-14 Score=96.65 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .++..++++|.+.+++. .++.+
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-~~-~~~~ig~~~q~~~l~~~-----~tv~e 94 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-KE-VQRNIGYLPEHNPLYLD-----MYVRE 94 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-HH-HHhceEEecCCCCCCCC-----CcHHH
Confidence 3445678999999999999999999999999999886543332211111 11 24568999999998876 66777
Q ss_pred HHHHhhc
Q 038901 93 IVKCLGM 99 (107)
Q Consensus 93 ~~~~~~~ 99 (107)
++.+...
T Consensus 95 ~l~~~~~ 101 (301)
T TIGR03522 95 YLQFIAG 101 (301)
T ss_pred HHHHHHH
Confidence 7665443
No 35
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.51 E-value=1.6e-14 Score=99.03 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+||||||||||+++|+|+..++.|.+.......... ...++.+++++|.+.+++. +++.
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~vfQ~~~lfp~-----ltv~ 104 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV---PAENRHVNTVFQSYALFPH-----MTVF 104 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---CHHHCCEEEEecCcccCCC-----CCHH
Confidence 3445567899999999999999999999999999988654433322111 1124679999999999887 6667
Q ss_pred HHHHHh
Q 038901 92 EIVKCL 97 (107)
Q Consensus 92 ~~~~~~ 97 (107)
+++.+.
T Consensus 105 eNi~~~ 110 (375)
T PRK09452 105 ENVAFG 110 (375)
T ss_pred HHHHHH
Confidence 776653
No 36
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.8e-14 Score=98.76 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+........... ..++.++|++|.+.+++. +++.+
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~vfQ~~~lfp~-----ltv~e 110 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---PYQRPINMMFQSYALFPH-----MTVEQ 110 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCCccCCC-----CCHHH
Confidence 4455678999999999999999999999999999886544333221111 124679999999999987 67777
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 111 Ni~~~ 115 (377)
T PRK11607 111 NIAFG 115 (377)
T ss_pred HHHHH
Confidence 77654
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.51 E-value=1.1e-14 Score=93.04 Aligned_cols=79 Identities=16% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. ..++.+++++|.+.++.. .++
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv 97 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD-----RTV 97 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc-----ccH
Confidence 3455678999999999999999999999999988885443332211100000 013468899999887765 445
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 98 ~e~l~~ 103 (216)
T TIGR00960 98 YDNVAF 103 (216)
T ss_pred HHHHHH
Confidence 555443
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2.3e-14 Score=91.31 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+........... . .+...++++|.+.++..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~-~~~~i~~v~q~~~~~~~ 86 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--P-ERRNIGMVFQDYALFPH 86 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--h-hhccEEEEcCchhhccC
Confidence 34455678999999999999999999999999998885443322211111 1 13568899999887754
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=3.3e-14 Score=92.07 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... ..+..+++++|.|.++.. .++.+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~i~~v~q~~~~~~~-----~tv~e 93 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQERNVGFVFQHYALFRH-----MTVFD 93 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC---ccccceEEEecCCcccCC-----CCHHH
Confidence 4455678999999999999999999999999988885443332211111 113568899999888754 44455
Q ss_pred HHH
Q 038901 93 IVK 95 (107)
Q Consensus 93 ~~~ 95 (107)
++.
T Consensus 94 ~l~ 96 (239)
T cd03296 94 NVA 96 (239)
T ss_pred HHh
Confidence 544
No 40
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2.8e-14 Score=90.78 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+........... ..++..++++|.+.+++. .++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~---~~~~~i~~~~q~~~~~~~-----~tv 87 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP---PADRPVSMLFQENNLFAH-----LTV 87 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC---HhHccEEEEecccccCCC-----CcH
Confidence 344555688999999999999999999999999998885433322111111 113568899999988765 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 88 ~enl~~ 93 (211)
T cd03298 88 EQNVGL 93 (211)
T ss_pred HHHHhc
Confidence 565543
No 41
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.50 E-value=1.3e-14 Score=98.93 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=58.0
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+...+.......... ..++.++|++|.+.+++. .
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~-----~ 86 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH-----M 86 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC-----C
Confidence 34455678999999999999999999999999999986544443222111100 014579999999999987 5
Q ss_pred HHHHHHHHh
Q 038901 89 VGKEIVKCL 97 (107)
Q Consensus 89 ~~~~~~~~~ 97 (107)
++.+++.+.
T Consensus 87 TV~eNi~~~ 95 (363)
T TIGR01186 87 TILQNTSLG 95 (363)
T ss_pred CHHHHHHHH
Confidence 666666543
No 42
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=2.4e-14 Score=91.09 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=52.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+......... . .+...++++|.+.+++. .++.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~-~~~~i~~~~q~~~~~~~-----~tv~e 89 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A-ARNRIGYLPEERGLYPK-----MKVID 89 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H-HHccEEEeccCCcCCcC-----CcHHH
Confidence 34456789999999999999999999999998888854332221110 1 13568899999888765 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 90 ~l~~ 93 (210)
T cd03269 90 QLVY 93 (210)
T ss_pred HHHH
Confidence 5544
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.50 E-value=2.6e-14 Score=95.52 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=55.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..+++|.+...+..... .. ...+..+++++|.+.+++. .++
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~v~q~~~~~~~-----~tv 94 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RA-RLARVAIGVVPQFDNLDPE-----FTV 94 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-cH-HHHhhcEEEEeccccCCcC-----CcH
Confidence 3345566889999999999999999999999999988854433321111 11 1114568999999988765 556
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 95 ~e~l~~ 100 (303)
T TIGR01288 95 RENLLV 100 (303)
T ss_pred HHHHHH
Confidence 666554
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.50 E-value=2.3e-14 Score=91.60 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+......... .... .++.+++++|.|.+++. .++.+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~e 97 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAE-ARRRLGFVSDSTGLYDR-----LTARE 97 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHH-HHhhEEEecCCcccCcC-----CCHHH
Confidence 34456789999999999999999999999999988854433322111 1111 13568899999988765 45556
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 98 ~l~~ 101 (218)
T cd03266 98 NLEY 101 (218)
T ss_pred HHHH
Confidence 5544
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.50 E-value=2.8e-14 Score=97.67 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+........... ..++.++|++|.+.+++. .++.+
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~---~~~~~i~~v~Q~~~l~~~-----~tv~e 94 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP---PAERGVGMVFQSYALYPH-----LSVAE 94 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HhHCCEEEEeCCcccCCC-----CCHHH
Confidence 3455678999999999999999999999999998885443332211111 113568999999988876 56666
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 95 ni~~~ 99 (369)
T PRK11000 95 NMSFG 99 (369)
T ss_pred HHHhH
Confidence 66543
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=4.7e-14 Score=90.32 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+........ . .....++++|.+.+++. .+..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-----~-~~~~i~~v~q~~~~~~~-----~tv~ 91 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----G-PGPDRGYVFQQDALLPW-----LTVL 91 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----c-ccCcEEEEecccccccC-----CCHH
Confidence 34455678999999999999999999999999888885433222111 1 14568899999887764 4445
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 92 e~l~ 95 (220)
T cd03293 92 DNVA 95 (220)
T ss_pred HHHH
Confidence 5544
No 47
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.50 E-value=2e-14 Score=97.51 Aligned_cols=83 Identities=10% Similarity=-0.062 Sum_probs=58.1
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCc
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
.........+|++++|+|+||||||||+++|+|+..++.|.+.............. ..++.+++++|.+.+++.
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~---- 96 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS---- 96 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc----
Confidence 33444556788999999999999999999999999999886544333221111100 114578999999988875
Q ss_pred hHHHHHHHHH
Q 038901 87 EFVGKEIVKC 96 (107)
Q Consensus 87 ~~~~~~~~~~ 96 (107)
.++.+++.+
T Consensus 97 -~tv~eni~~ 105 (343)
T TIGR02314 97 -RTVFGNVAL 105 (343)
T ss_pred -CcHHHHHHH
Confidence 556666554
No 48
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.50 E-value=1.9e-14 Score=93.29 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=54.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||+|||||+++|+|+..+.+|.+................+...++++|.+.+++. .++.
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~ 95 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN-----LTVF 95 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC-----CCHH
Confidence 34455688999999999999999999999999998885443332211111001112458899999988765 4555
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 96 ~nl~~ 100 (242)
T TIGR03411 96 ENLEL 100 (242)
T ss_pred HHHHH
Confidence 55543
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=2.3e-14 Score=91.76 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=52.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+++|.+......... .... .++..++++|.+.+++. .++.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~ 91 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE-VRRRIGIVFQDLSVDDE-----LTGW 91 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHH-HhhcEEEecCCcccccc-----CcHH
Confidence 344556789999999999999999999999999888854332221111 1111 13468899999887654 4444
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 92 ~~l~~ 96 (220)
T cd03265 92 ENLYI 96 (220)
T ss_pred HHHHH
Confidence 54433
No 50
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.9e-14 Score=93.91 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+..............+.+...++++|.|.+++. .++.+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~e 99 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE-----MTVIE 99 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC-----CcHHH
Confidence 3445678999999999999999999999999998885443332211111001112346788999888765 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 100 nl~~ 103 (255)
T PRK11300 100 NLLV 103 (255)
T ss_pred HHHH
Confidence 5543
No 51
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=2.1e-14 Score=92.66 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+............. ...++.+++++|.+.+++. .
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~ 102 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD-----F 102 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC-----C
Confidence 3445567899999999999999999999999998888544333221111100 0112458899999887765 4
Q ss_pred HHHHHHHH
Q 038901 89 VGKEIVKC 96 (107)
Q Consensus 89 ~~~~~~~~ 96 (107)
+..+++.+
T Consensus 103 tv~e~l~~ 110 (233)
T PRK11629 103 TALENVAM 110 (233)
T ss_pred CHHHHHHH
Confidence 55555543
No 52
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.49 E-value=1.3e-14 Score=91.88 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=52.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+............ ....++..++++|.+.+++. .+
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t 92 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN-----ET 92 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC-----Cc
Confidence 34455789999999999999999999999999988854333222110000 00113568899999988765 45
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 93 ~~e~~~~ 99 (206)
T TIGR03608 93 VEENLDL 99 (206)
T ss_pred HHHHHHH
Confidence 5555443
No 53
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=9.3e-15 Score=93.66 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||+|||||+++|.|+..|+.|.+...+.........+ ..+++.++++|.-.+|+. +++
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss-----ltV 102 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS-----LTV 102 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc-----cch
Confidence 4455678999999999999999999999999999997665555443333211 124679999999999987 788
Q ss_pred HHHHHHh
Q 038901 91 KEIVKCL 97 (107)
Q Consensus 91 ~~~~~~~ 97 (107)
.|++.+-
T Consensus 103 ~eNVafp 109 (263)
T COG1127 103 FENVAFP 109 (263)
T ss_pred hHhhhee
Confidence 8877663
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.49 E-value=2.2e-14 Score=91.37 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=53.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+............. ...++.+++++|.|.++.. .+
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t 95 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD-----RT 95 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC-----Cc
Confidence 3445567899999999999999999999999988888543332211110000 0013568899999988764 44
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 96 v~~~l~~ 102 (214)
T TIGR02673 96 VYENVAL 102 (214)
T ss_pred HHHHHHH
Confidence 4444443
No 55
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.49 E-value=3e-14 Score=97.27 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc--cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+||||||||||+++|+|+..++. |.+.......... ...++.+++++|.+.+++. +++
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~---~~~~r~ig~vfQ~~~l~p~-----~tv 96 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA---PPHKRGLALLFQNYALFPH-----LKV 96 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC---CHHHCCEEEEECCcccCCC-----CcH
Confidence 34456789999999999999999999999999988 8544333221111 1124678999999999877 677
Q ss_pred HHHHHHhh
Q 038901 91 KEIVKCLG 98 (107)
Q Consensus 91 ~~~~~~~~ 98 (107)
.+++.+..
T Consensus 97 ~enl~~~l 104 (362)
T TIGR03258 97 EDNVAFGL 104 (362)
T ss_pred HHHHHHHH
Confidence 77776543
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.49 E-value=4.9e-14 Score=89.77 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=48.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+............ .+..+++++|.+.++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMVFQNYALYPH 86 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEEecChhhccC
Confidence 34456789999999999999999999999999888854433322111111 13468899999887754
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.49 E-value=2.1e-14 Score=91.87 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=53.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+.............. +....+++++|.+.+++. .
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~ 98 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD-----F 98 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC-----C
Confidence 34555688999999999999999999999999998885443332211111000 111458899999888765 4
Q ss_pred HHHHHHH
Q 038901 89 VGKEIVK 95 (107)
Q Consensus 89 ~~~~~~~ 95 (107)
++.+++.
T Consensus 99 tv~~~l~ 105 (221)
T TIGR02211 99 TALENVA 105 (221)
T ss_pred cHHHHHH
Confidence 4555544
No 58
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.49 E-value=2.7e-14 Score=88.89 Aligned_cols=89 Identities=17% Similarity=-0.007 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee--eEEeeCCcEEEEEeCCCCCCCCC
Q 038901 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK--TTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
+.......+..+|+.+-|+||||||||||++.|++...++.|.+........... .+.+.++++++|+|+.-+.+.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~-- 93 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD-- 93 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccccc--
Confidence 3455566777789999999999999999999999999999996554444333222 344457899999999988876
Q ss_pred CchHHHHHHHHHhhcc
Q 038901 85 GSEFVGKEIVKCLGMA 100 (107)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (107)
.++.+++.+....
T Consensus 94 ---~tvyeNVA~pL~v 106 (223)
T COG2884 94 ---RTVYENVALPLRV 106 (223)
T ss_pred ---chHhhhhhhhhhc
Confidence 6777776665443
No 59
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.8e-14 Score=93.34 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=53.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+................+..+++++|.+.++.. .++.+
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~e 97 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR-----LSVYD 97 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc-----CcHHH
Confidence 4455678999999999999999999999999998885443332211111001113468899999887764 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 98 nl~~ 101 (241)
T PRK10895 98 NLMA 101 (241)
T ss_pred HHhh
Confidence 5543
No 60
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.5e-14 Score=91.53 Aligned_cols=81 Identities=16% Similarity=0.031 Sum_probs=58.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
...-.+|+.++|||+||||||||+++|.|+..+++|.+............. ...+.++++++|.+.+.+. .++
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r-----~sv 98 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR-----LSV 98 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc-----cHH
Confidence 345567899999999999999999999999999998554433322222211 1124689999999999877 666
Q ss_pred HHHHHHhh
Q 038901 91 KEIVKCLG 98 (107)
Q Consensus 91 ~~~~~~~~ 98 (107)
.+++.+-+
T Consensus 99 ~~NVl~gr 106 (258)
T COG3638 99 LENVLLGR 106 (258)
T ss_pred HHHHHhhh
Confidence 66655433
No 61
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=3.4e-16 Score=98.01 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=65.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|||||||||.+.+++|+..+++|.+................+--++|++|.|.+|.. ++++
T Consensus 23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~-----LtV~ 97 (243)
T COG1137 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK-----LTVE 97 (243)
T ss_pred eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc-----CcHH
Confidence 34566788999999999999999999999999999996554444443333322224568999999999977 8888
Q ss_pred HHHHHhhccC
Q 038901 92 EIVKCLGMAK 101 (107)
Q Consensus 92 ~~~~~~~~~~ 101 (107)
+++.++....
T Consensus 98 dNi~~vlE~~ 107 (243)
T COG1137 98 DNIMAVLEIR 107 (243)
T ss_pred HHHHHHHhhh
Confidence 8888776543
No 62
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.49 E-value=2.3e-14 Score=91.20 Aligned_cols=71 Identities=18% Similarity=0.056 Sum_probs=49.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+.......... ......++.++|++|.+.+++.
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 3445568899999999999999999999999998888544333211100 0001113568899999988764
No 63
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.49 E-value=4.8e-14 Score=96.04 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=55.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+........... .....++.+++++|.+.+++. .+
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~t 91 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH-----LS 91 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCC-----Cc
Confidence 3445678999999999999999999999999998885443332211100 011124568999999988876 56
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 92 v~enl~~ 98 (354)
T TIGR02142 92 VRGNLRY 98 (354)
T ss_pred HHHHHHH
Confidence 6666554
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=2.6e-14 Score=92.20 Aligned_cols=79 Identities=15% Similarity=0.046 Sum_probs=53.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. ..+..+++++|.+.+++. .+.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~ 99 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS-----RTV 99 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC-----CcH
Confidence 3455678999999999999999999999999998885443332211110000 013468899999988765 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 100 ~e~l~~ 105 (233)
T cd03258 100 FENVAL 105 (233)
T ss_pred HHHHHH
Confidence 555443
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=5e-14 Score=92.78 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=53.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+...+.......... .....+++++|.+.+++. .
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~ 117 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH-----R 117 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC-----C
Confidence 34555678999999999999999999999999998885443332211111000 112468899999988765 4
Q ss_pred HHHHHHHH
Q 038901 89 VGKEIVKC 96 (107)
Q Consensus 89 ~~~~~~~~ 96 (107)
++.+++.+
T Consensus 118 tv~e~l~~ 125 (269)
T cd03294 118 TVLENVAF 125 (269)
T ss_pred cHHHHHHH
Confidence 45555443
No 66
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.49 E-value=3.8e-14 Score=90.02 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+.......... .. .++..++++|.+.+++. .++.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~-~~~~i~~~~q~~~~~~~-----~tv~e 91 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IE-ALRRIGALIEAPGFYPN-----LTARE 91 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HH-HHhhEEEecCCCccCcc-----CcHHH
Confidence 344567899999999999999999999999998888544333211111 11 13568899999887765 55566
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 92 ~l~~ 95 (208)
T cd03268 92 NLRL 95 (208)
T ss_pred HHHH
Confidence 5544
No 67
>PRK10908 cell division protein FtsE; Provisional
Probab=99.48 E-value=3.5e-14 Score=91.05 Aligned_cols=70 Identities=19% Similarity=0.069 Sum_probs=48.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+.............. ..++..+|++|.|.++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 3455688999999999999999999999999988885443332211111000 113568899999887554
No 68
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.48 E-value=2.4e-14 Score=98.85 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+.+|.+............... .+.+++++|.+.++.. .++.+
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~-~~~ig~v~q~~~l~~~-----~tv~e 96 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA-SRRVASVPQDTSLSFE-----FDVRQ 96 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH-hcceEEEccCCCCCCC-----CCHHH
Confidence 34456889999999999999999999999999998865443332211111111 3568899999887654 45555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 97 ~v~~ 100 (402)
T PRK09536 97 VVEM 100 (402)
T ss_pred HHHh
Confidence 5544
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.48 E-value=3.8e-14 Score=91.01 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPG 78 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~ 78 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+............ ....+...+|++|.|.
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPM 92 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCch
Confidence 3345556789999999999999999999999999988854433322111110 0112356889999983
No 70
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=3.1e-14 Score=88.57 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... .....+...++++|.|.++..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3455678999999999999999999999999988885443332211110 001124568899999987754
No 71
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.48 E-value=2.6e-14 Score=90.94 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=45.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+.............. .+..+++++|.+.
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~ 85 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE-LRRKVGLVFQNPD 85 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHH-HHhhceEEecChh
Confidence 3455678999999999999999999999999998885443332111111111 1356789999874
No 72
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=3.1e-14 Score=96.64 Aligned_cols=80 Identities=11% Similarity=-0.037 Sum_probs=55.0
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
......+|++++|+|+||||||||+++|+|+..+++|.+.............. ..++.+++++|.+.++.. .+
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~-----~t 98 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS-----RT 98 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC-----Cc
Confidence 34455688999999999999999999999999998885443332211111000 013568999999988765 45
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 99 v~eni~~ 105 (343)
T PRK11153 99 VFDNVAL 105 (343)
T ss_pred HHHHHHH
Confidence 5555544
No 73
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=6.2e-14 Score=86.89 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... .. .+...++++|.+.++..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~ 87 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EE-VKRRIGYLPEEPSLYEN 87 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hh-hhccEEEEecCCccccC
Confidence 3455678999999999999999999999999888885433332211111 11 23568899999988765
No 74
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=2.7e-14 Score=92.35 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=48.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+...+............+...++++|.+.+++.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 3455678999999999999999999999999998885443332211111001113458899998887764
No 75
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.48 E-value=1.6e-14 Score=102.55 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..-++|+.++|+|+||||||||++.|+|+..++.|.+..++...... ...+ ++.+++++|.|.+++.
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~l-r~~i~~V~Q~~~lF~~ 422 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDEL-RRRISVFAQDAHLFDT 422 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHH-HhheEEEccCcccccc
Confidence 44568999999999999999999999999999999765555443333 3232 5689999999999875
No 76
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.9e-14 Score=92.27 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+............ ....+..+++++|.+.++..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 344556789999999999999999999999999888854433322111100 00113467899999887764
No 77
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.48 E-value=9.2e-14 Score=88.61 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=53.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+........... . .+...++++|.|.++.. .+..
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~-~~~~i~~v~q~~~~~~~-----~t~~ 88 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--P-YQRPVSMLFQENNLFAH-----LTVR 88 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--h-hccceEEEeccCccCCC-----CcHH
Confidence 34455688999999999999999999999999999885443332211111 1 24568899999988765 4555
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 89 en~~ 92 (213)
T TIGR01277 89 QNIG 92 (213)
T ss_pred HHHH
Confidence 5543
No 78
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.48 E-value=2.7e-14 Score=90.97 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=52.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+............ ....++.+++++|.+.+++. .++
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~t~ 95 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD-----RNV 95 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC-----CcH
Confidence 34556789999999999999999999999999888854332221111000 00113468899999988765 444
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 96 ~~~l~~ 101 (214)
T cd03292 96 YENVAF 101 (214)
T ss_pred HHHHHH
Confidence 554443
No 79
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.47 E-value=5e-14 Score=92.25 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+..............+ ...+++++|.+.++.. .++.+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~-----~tv~e 95 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-ARRRAVLPQHSSLSFP-----FTVEE 95 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHh-hhheEEEccCCcCCCC-----CCHHH
Confidence 34556789999999999999999999999999988854433322111111111 2457899998877544 34555
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 96 ~l~~ 99 (258)
T PRK13548 96 VVAM 99 (258)
T ss_pred HHHh
Confidence 5443
No 80
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3.5e-14 Score=90.33 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=50.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
...+| +++|+|+||||||||+++|+|+..+..|.+........... .. .+..+++++|.+.++.. .++.+++
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~tv~~~l 93 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QK-LRRRIGYLPQEFGVYPN-----FTVREFL 93 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HH-HHhheEEecCCCccccc-----CCHHHHH
Confidence 33457 99999999999999999999999998885433222111111 11 13568899999988765 4455554
Q ss_pred HH
Q 038901 95 KC 96 (107)
Q Consensus 95 ~~ 96 (107)
.+
T Consensus 94 ~~ 95 (211)
T cd03264 94 DY 95 (211)
T ss_pred HH
Confidence 43
No 81
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.47 E-value=4.5e-14 Score=91.50 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=47.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.......+|++++|+|+||||||||+++|+|+. .+..|.+................+...++++|.|.+++.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 344556688999999999999999999999995 577775443332111111001112336788999887654
No 82
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.47 E-value=8.7e-14 Score=87.83 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+........... .. .....+++++.+.+++. .+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~tv~ 91 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DE-PHRNILYLGHLPGLKPE-----LSAL 91 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HH-hhhheEEeccCcccccC-----CcHH
Confidence 34455678999999999999999999999999988885443332211111 11 13467888888777654 4555
Q ss_pred HHHHH
Q 038901 92 EIVKC 96 (107)
Q Consensus 92 ~~~~~ 96 (107)
+++.+
T Consensus 92 ~~l~~ 96 (198)
T TIGR01189 92 ENLHF 96 (198)
T ss_pred HHHHH
Confidence 55443
No 83
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.4e-14 Score=95.08 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+........... .....++.+++++|.+.+++. .+
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~t 92 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPH-----YK 92 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCC-----Cc
Confidence 3444678999999999999999999999999998885443332211100 011124578999999988876 45
Q ss_pred HHHHHH
Q 038901 90 GKEIVK 95 (107)
Q Consensus 90 ~~~~~~ 95 (107)
+.+++.
T Consensus 93 v~enl~ 98 (352)
T PRK11144 93 VRGNLR 98 (352)
T ss_pred HHHHHH
Confidence 555544
No 84
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.47 E-value=4.9e-14 Score=90.62 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+............. ......+++++|.+.+++.
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 344567899999999999999999999999999888544333221111100 0112458899999888764
No 85
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2.2e-15 Score=92.32 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=54.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
.....+|+.++|.||+|||||||++.++.++.+++|.....+........-. .++++.|+.|+|.++...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea-~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA-YRQQVSYCAQTPALFGDT 92 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHH-HHHHHHHHHcCccccccc
Confidence 3455678999999999999999999999999999996554444444333323 367889999999998763
No 86
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=8.6e-14 Score=89.77 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+.+|.+............ .....++++|.+.+++. .++.
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~-----~tv~ 89 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSMLFQENNLFSH-----LTVA 89 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEEEecccccccC-----CcHH
Confidence 344556789999999999999999999999999988854433322111111 13468899999888765 4455
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 90 e~l~ 93 (232)
T PRK10771 90 QNIG 93 (232)
T ss_pred HHHh
Confidence 5543
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.47 E-value=7.6e-14 Score=90.24 Aligned_cols=68 Identities=18% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+............ .. .+..++++|.+.++..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~-~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AA-LARLGVVFQQPTLDLD 88 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hh-hhhEEEeCCCCCCccc
Confidence 34556789999999999999999999999999988854433322111111 11 2468899999877654
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.47 E-value=3e-14 Score=92.39 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=48.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+............. ...+...++++|.+.+++.
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 3445567899999999999999999999999998888544333221110000 0013468899999887754
No 89
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=4.9e-14 Score=97.21 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=55.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+.............. ..+..++|++|.+.+++. .
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~-----~ 121 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH-----M 121 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC-----C
Confidence 34455678999999999999999999999999999886543332211111000 112468999999998876 5
Q ss_pred HHHHHHHH
Q 038901 89 VGKEIVKC 96 (107)
Q Consensus 89 ~~~~~~~~ 96 (107)
++.+++.+
T Consensus 122 Tv~enl~~ 129 (400)
T PRK10070 122 TVLDNTAF 129 (400)
T ss_pred CHHHHHHH
Confidence 55665554
No 90
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=4.6e-14 Score=92.70 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+..............+ ...+++++|.+.++.. .++.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~ 103 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF-ARKVAYLPQQLPAAEG-----MTVR 103 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH-hhheEEeccCCCCCCC-----ccHH
Confidence 344556789999999999999999999999999888854433322111111111 3468899998777654 3444
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 104 e~l~ 107 (265)
T PRK10575 104 ELVA 107 (265)
T ss_pred HHHH
Confidence 5443
No 91
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=1.4e-13 Score=90.07 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+...+.... . .....++++|.+.+++.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~-----~-~~~~~~~v~q~~~~~~~ 84 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE-----G-PGAERGVVFQNEGLLPW 84 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-----C-CCCcEEEEeCCCccCCC
Confidence 34455678999999999999999999999999998885433222110 0 12347899999887764
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.46 E-value=3.1e-14 Score=91.50 Aligned_cols=78 Identities=15% Similarity=0.041 Sum_probs=51.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeee-EEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
.....+|++++|+|+||||||||+++|+|+. .+..|.+............ ....++.+++++|.+.++ .
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~---- 94 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-P---- 94 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-c----
Confidence 3455678999999999999999999999999 7887754333322111000 011135688999998876 3
Q ss_pred hHHHHHHHHH
Q 038901 87 EFVGKEIVKC 96 (107)
Q Consensus 87 ~~~~~~~~~~ 96 (107)
.++.+++.+
T Consensus 95 -~tv~e~l~~ 103 (227)
T cd03260 95 -GSIYDNVAY 103 (227)
T ss_pred -ccHHHHHHh
Confidence 455555443
No 93
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.46 E-value=1e-13 Score=90.80 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+....... .. .+...++++|.+.+++.
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~-~~~~i~~v~q~~~l~~~ 95 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AE-AREDTRLMFQDARLLPW 95 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HH-hhCceEEEecCccCCCC
Confidence 445567899999999999999999999999998888543222110 01 13568899999888764
No 94
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.46 E-value=1.1e-13 Score=87.68 Aligned_cols=78 Identities=12% Similarity=-0.003 Sum_probs=52.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||+|||||+++|+|+..+.+|.+.......... . ...+...++++|.+.++.. .+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~i~~~~q~~~~~~~-----~tv 90 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DSIARGLLYLGHAPGIKTT-----LSV 90 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HHhhhheEEeccccccCCC-----cCH
Confidence 33445568899999999999999999999999999888543332221111 1 1123568889988887654 444
Q ss_pred HHHHH
Q 038901 91 KEIVK 95 (107)
Q Consensus 91 ~~~~~ 95 (107)
.+++.
T Consensus 91 ~e~l~ 95 (201)
T cd03231 91 LENLR 95 (201)
T ss_pred HHHHH
Confidence 44443
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.46 E-value=8.5e-14 Score=91.65 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=52.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+............ ....+..+++++|.+.+++. .++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv 101 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD-----MNV 101 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC-----CCH
Confidence 44556789999999999999999999999999888854433221111000 00013457899999888765 444
Q ss_pred HHHHH
Q 038901 91 KEIVK 95 (107)
Q Consensus 91 ~~~~~ 95 (107)
.+++.
T Consensus 102 ~enl~ 106 (269)
T PRK11831 102 FDNVA 106 (269)
T ss_pred HHHHH
Confidence 55543
No 96
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.45 E-value=6.2e-14 Score=87.50 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=51.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC---CCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP---GLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p---~~~~~~~~~~~~ 89 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+................+...++++|.+ .+++. .+
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~-----~t 94 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD-----LS 94 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC-----Cc
Confidence 34456789999999999999999999999999988854433322111110011135688999885 35444 45
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
..+++.+
T Consensus 95 ~~e~l~~ 101 (182)
T cd03215 95 VAENIAL 101 (182)
T ss_pred HHHHHHH
Confidence 5555543
No 97
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.9e-14 Score=92.20 Aligned_cols=70 Identities=9% Similarity=-0.082 Sum_probs=48.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+.............. ....++|++|.+.++..
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE-VARRIGLLAQNATTPGD 95 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH-HhhheEEeeccCcCCCC
Confidence 34455678999999999999999999999999988885433222111111111 12468899999877654
No 98
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=7.9e-14 Score=88.37 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
......+|++++|+|+||||||||+++|+|+.. +.+|.+........... .. ..+..++++|.+.++.. .
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~ 98 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EK-YPGEIIYVSEEDVHFPT-----L 98 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hh-hcceEEEEecccccCCC-----C
Confidence 344556789999999999999999999999988 67775433222111111 11 24568899998887765 6
Q ss_pred HHHHHHHHh
Q 038901 89 VGKEIVKCL 97 (107)
Q Consensus 89 ~~~~~~~~~ 97 (107)
++.+++.+.
T Consensus 99 tv~~~l~~~ 107 (202)
T cd03233 99 TVRETLDFA 107 (202)
T ss_pred cHHHHHhhh
Confidence 777776654
No 99
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.45 E-value=6.7e-14 Score=90.66 Aligned_cols=78 Identities=19% Similarity=0.108 Sum_probs=52.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+........... .....++.+++++|.+.++.. .++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~ 95 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH-----LTAL 95 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC-----CcHH
Confidence 4455678999999999999999999999999988885443332211100 001113468899999887764 4445
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 96 ~~l~ 99 (240)
T PRK09493 96 ENVM 99 (240)
T ss_pred HHHH
Confidence 5443
No 100
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.45 E-value=1.1e-13 Score=87.73 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+........... .. ..+..+++++.+.+++. .++
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~-----~tv 91 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DE-YHQDLLYLGHQPGIKTE-----LTA 91 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HH-hhhheEEeCCccccCcC-----CcH
Confidence 344556688999999999999999999999999998885443332211111 11 13567888888877654 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 92 ~e~l~~ 97 (204)
T PRK13538 92 LENLRF 97 (204)
T ss_pred HHHHHH
Confidence 555544
No 101
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.9e-14 Score=99.10 Aligned_cols=87 Identities=13% Similarity=-0.034 Sum_probs=65.0
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
+.......+...+|++.+|+|.||||||||+|+|+|.+.+++|.+...+.........+-...-+.+|+|.+.+.+.
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~--- 97 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN--- 97 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC---
Confidence 34556667778899999999999999999999999999999996654443322111111123568899999999988
Q ss_pred chHHHHHHHHHh
Q 038901 86 SEFVGKEIVKCL 97 (107)
Q Consensus 86 ~~~~~~~~~~~~ 97 (107)
+++.|++.+-
T Consensus 98 --LsVaeNifLg 107 (500)
T COG1129 98 --LSVAENIFLG 107 (500)
T ss_pred --ccHHHHhhcc
Confidence 8888887543
No 102
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.7e-13 Score=87.95 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=49.4
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
.......+|++++|+|+||||||||.++|+|+..++.|.+...+.............+.+-+|+|+|.-
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~ 93 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS 93 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc
Confidence 345566788999999999999999999999999999996554443222211111124567789999854
No 103
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=9.7e-14 Score=90.39 Aligned_cols=80 Identities=15% Similarity=0.032 Sum_probs=52.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
.......+|++++|+|+||||||||+++|+|+..+ ..|.+.............. .+..+++++|.|.++..
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~~~~~--- 96 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE-LRRRVQMVFQIPNPIPN--- 96 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH-HhccEEEEeccCccCCC---
Confidence 33445567899999999999999999999999864 4664333222111111111 13568899999886654
Q ss_pred chHHHHHHHHH
Q 038901 86 SEFVGKEIVKC 96 (107)
Q Consensus 86 ~~~~~~~~~~~ 96 (107)
.++.+++.+
T Consensus 97 --~tv~enl~~ 105 (250)
T PRK14247 97 --LSIFENVAL 105 (250)
T ss_pred --CcHHHHHHH
Confidence 455555543
No 104
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.5e-14 Score=90.45 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=53.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||+|||||++.|+|...+++|....+..........+. .++...++|...+-.. .++.|
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~l-A~~raVlpQ~s~laFp-----Ftv~e 94 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL-ARHRAVLPQNSSLAFP-----FTVQE 94 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHH-HHHhhhcccCcccccc-----eEHHH
Confidence 44556789999999999999999999999999999865544443332222221 2445556665544333 45666
Q ss_pred HHHHhhc
Q 038901 93 IVKCLGM 99 (107)
Q Consensus 93 ~~~~~~~ 99 (107)
++++-+.
T Consensus 95 VV~mGr~ 101 (259)
T COG4559 95 VVQMGRI 101 (259)
T ss_pred HHHhccc
Confidence 6655443
No 105
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.44 E-value=9.9e-14 Score=89.20 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. ....+++++|.+.+++
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~ 94 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-YRQQVSYCAQTPTLFG 94 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH-HHhccEEEeccccccc
Confidence 3455678999999999999999999999999988885433322111111101 1356789999988764
No 106
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.44 E-value=8.5e-14 Score=90.99 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=47.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+.............. ..+.++|++|.+.++..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA-RARRVALVEQDSDTAVP 89 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHH-HhhheEEecccCccCCC
Confidence 3455678999999999999999999999999988885443332211111001 12457889998865543
No 107
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.2e-14 Score=98.76 Aligned_cols=72 Identities=21% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+.....++|+.++|+|+||||||||++.|+|+..+..|.+..+...........| ++++.+|.|.|.++..
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~-~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW-RKQISWVSQNPYLFAG 409 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH-HhHeeeeCCCCccccc
Confidence 44455667889999999999999999999999999999977766665555554444 6789999999999975
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=8e-14 Score=88.15 Aligned_cols=76 Identities=14% Similarity=0.015 Sum_probs=51.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+......... .... .++.++++++.+.+++. .++.+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~~ 93 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCT-YQKQLCFVGHRSGINPY-----LTLRE 93 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHH-HHhheEEeccccccCcC-----CCHHH
Confidence 34556789999999999999999999999999988854433222111 1111 13567889888877654 44455
Q ss_pred HHH
Q 038901 93 IVK 95 (107)
Q Consensus 93 ~~~ 95 (107)
++.
T Consensus 94 ~~~ 96 (200)
T PRK13540 94 NCL 96 (200)
T ss_pred HHH
Confidence 444
No 109
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.44 E-value=9.3e-14 Score=88.08 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=45.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+......... .. .++.+++++|.|.
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~-~~~~i~~~~q~~~ 81 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KE-RRKSIGYVMQDVD 81 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HH-hhcceEEEecChh
Confidence 344556789999999999999999999999999988854332222111 11 2356889999874
No 110
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=2.2e-13 Score=86.98 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+......... .. ..+..+++++.+.+++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~-~~~~i~~~~q~~~~~~~ 96 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GD-RSRFMAYLGHLPGLKAD 96 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hh-hhhceEEeecCcccccC
Confidence 34456789999999999999999999999999988854433221111 01 12457888898887654
No 111
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.4e-13 Score=89.77 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
......+|++++|+|+||||||||+++|+|+..+. .|.+...+.... ...... .+..+++++|.+.+++.
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~-~~~~i~~~~q~~~~~~~-- 99 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE-VRREVGMVFQYPNPFPH-- 99 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH-HhhceeEEecCCccCCC--
Confidence 34455678999999999999999999999998763 664332222111 001111 13568899999988765
Q ss_pred CchHHHHHHHH
Q 038901 85 GSEFVGKEIVK 95 (107)
Q Consensus 85 ~~~~~~~~~~~ 95 (107)
.++.+++.
T Consensus 100 ---~tv~enl~ 107 (253)
T PRK14267 100 ---LTIYDNVA 107 (253)
T ss_pred ---CcHHHHHH
Confidence 44455544
No 112
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=7.8e-14 Score=91.13 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=47.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+.............. .....++++|.+.++..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ-LARRLALLPQHHLTPEG 90 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHH-HhhheEEecccCCCCCC
Confidence 3445678999999999999999999999999888885433322111101001 13457889998876644
No 113
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.43 E-value=1.2e-13 Score=89.84 Aligned_cols=71 Identities=18% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee-------EEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT-------TVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+............ ....+...++++|.+.+++.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPH 99 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCC
Confidence 344556789999999999999999999999999888854433322111000 00113468899999887764
No 114
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1e-13 Score=91.41 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+..............+ +..++|++|.|.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~-~~~i~~v~q~~~ 93 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-RKKIGIIFQNPD 93 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH-hcceEEEEeCHH
Confidence 34556789999999999999999999999999988854433322111111111 356889999873
No 115
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.3e-13 Score=89.45 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=48.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+.............. .+...++++|.+.+++
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID-LRRKIGMVFQQPHLFE 90 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHH-hhhcEEEEecCchhch
Confidence 34455678999999999999999999999999998885443332211111111 1356889999987764
No 116
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.1e-13 Score=91.44 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=46.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+...................+++++|.|.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPE 87 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChh
Confidence 345567899999999999999999999999999888544333221111100111356889999885
No 117
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.43 E-value=7.1e-14 Score=98.89 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=51.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+................+..+++++|.+.++.. .++.+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv~e 98 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ-----LTIAE 98 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC-----CcHHH
Confidence 4455678999999999999999999999999998885433222111000001113458899998877654 44555
Q ss_pred HHH
Q 038901 93 IVK 95 (107)
Q Consensus 93 ~~~ 95 (107)
++.
T Consensus 99 ~l~ 101 (501)
T PRK10762 99 NIF 101 (501)
T ss_pred Hhh
Confidence 443
No 118
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.43 E-value=1.5e-13 Score=86.21 Aligned_cols=67 Identities=19% Similarity=0.098 Sum_probs=45.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~ 78 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+......... .......++.+++++|.|.
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 344556789999999999999999999999999988854333221110 0000111346789999873
No 119
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.43 E-value=2.6e-13 Score=87.89 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+|+||||||||+++|+|+..+..|.+.......... ...++..+++++.|.+++. .+..++
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~---~~~~~~i~~~~q~~~~~~~-----~t~~en 92 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV---HARDRKIGFVFQHYALFKH-----LTVRDN 92 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC---ChhhcCEEEEecChhhccC-----CcHHHH
Confidence 34567899999999999999999999999998888543322221111 1113568899999988765 445555
Q ss_pred HHH
Q 038901 94 VKC 96 (107)
Q Consensus 94 ~~~ 96 (107)
+.+
T Consensus 93 l~~ 95 (237)
T TIGR00968 93 IAF 95 (237)
T ss_pred HHh
Confidence 543
No 120
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=8.5e-14 Score=92.13 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+...+........... .+.++|++|.|.
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~-~~~i~~~~q~~~ 91 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV-RRQVGMVFQNPD 91 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH-hhheEEEEeCHH
Confidence 34556789999999999999999999999999998854433322111111111 356899999983
No 121
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.1e-13 Score=89.69 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=52.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-----eeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-----EMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+........ ........+..+++++|.+.+++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~----- 96 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPH----- 96 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCC-----
Confidence 3455678999999999999999999999999988885443332210 000001113468899999988765
Q ss_pred HHHHHHH
Q 038901 88 FVGKEIV 94 (107)
Q Consensus 88 ~~~~~~~ 94 (107)
.+..+++
T Consensus 97 ~tv~e~i 103 (242)
T PRK11124 97 LTVQQNL 103 (242)
T ss_pred CcHHHHH
Confidence 4445544
No 122
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.43 E-value=2.3e-13 Score=87.50 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
.......+|++++|+|+||||||||+++|+|+.. +..|.+........ ... .+..+++++|.+.+++.
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~-~~~~i~~~~q~~~~~~~----- 95 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQ-FQKCVAYVRQDDILLPG----- 95 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHH-hcccEEEeCCCCccCcC-----
Confidence 3344556889999999999999999999999998 77774433222111 111 24568899999888765
Q ss_pred HHHHHHHHH
Q 038901 88 FVGKEIVKC 96 (107)
Q Consensus 88 ~~~~~~~~~ 96 (107)
.++.+++.+
T Consensus 96 ~tv~enl~~ 104 (226)
T cd03234 96 LTVRETLTY 104 (226)
T ss_pred CcHHHHHHH
Confidence 566666654
No 123
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.42 E-value=1.7e-13 Score=90.14 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
........+|++++|+|+||||||||+++|+|+..+.+|.+........... .......+++++|.+.
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~ 97 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD-YSYRSQRIRMIFQDPS 97 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc-hhhHhccEEEEecCch
Confidence 3445666788999999999999999999999999999886443332211101 1111346889999875
No 124
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.42 E-value=2.4e-13 Score=87.73 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+|+||||||||+++|+|+..+.+|.+......... . ....++++|.+.+++. .++.++
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----~-~~~~~~v~q~~~l~~~-----~tv~e~ 74 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-----P-GPDRMVVFQNYSLLPW-----LTVREN 74 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-----C-ChhheEEecCcccCCC-----CCHHHH
Confidence 3445789999999999999999999999999988854332221110 0 1124788999888765 455555
Q ss_pred HHH
Q 038901 94 VKC 96 (107)
Q Consensus 94 ~~~ 96 (107)
+.+
T Consensus 75 l~~ 77 (230)
T TIGR01184 75 IAL 77 (230)
T ss_pred HHH
Confidence 543
No 125
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.42 E-value=9.1e-14 Score=101.43 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.++++.|+|.+++.
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g 541 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV-RRQLGVVLQNGRLMSG 541 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH-HhccEEEccCCccCcc
Confidence 34556789999999999999999999999999999976555544333332222 5779999999999875
No 126
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=7.4e-14 Score=92.42 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. .++.+++++|.|.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~ 91 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWD-IRHKIGMVFQNPD 91 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH-HHhhceEEEcChH
Confidence 3455678999999999999999999999999999885443332211111111 1356889999873
No 127
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.42 E-value=3.2e-13 Score=87.40 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEE-eCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI-DTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~-d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+......... .... .....++++ +.+.++..
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKK-FLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchh-hcccEEEEcCCccccCCC
Confidence 34556789999999999999999999999999988854433322111 1111 134677776 55556543
No 128
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.42 E-value=1.3e-13 Score=94.61 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee----Eeeeee---EEeeCCcEEEEEeCCCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT----TCEMKT---TVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~----~~~~~~---~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+...... ...... ....++.++|++|.+.+++.
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~-- 120 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPW-- 120 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCC--
Confidence 344556789999999999999999999999999998865443321 100000 01112568999999999876
Q ss_pred CchHHHHHHHHHh
Q 038901 85 GSEFVGKEIVKCL 97 (107)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (107)
.++.+++.+.
T Consensus 121 ---~Tv~eNi~~~ 130 (382)
T TIGR03415 121 ---LTVEENVAFG 130 (382)
T ss_pred ---CcHHHHHHHH
Confidence 5666666543
No 129
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=5e-13 Score=84.67 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC-----CCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~-----~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
........-.++.+++||||||||||||+++|..+.....+. +...+...... ......++++++|+|.|.-++
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp 101 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP 101 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC
Confidence 344455666778999999999999999999999988776542 11111111111 001112578999999999887
Q ss_pred C
Q 038901 82 L 82 (107)
Q Consensus 82 ~ 82 (107)
.
T Consensus 102 ~ 102 (253)
T COG1117 102 M 102 (253)
T ss_pred c
Confidence 5
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.42 E-value=1.7e-13 Score=89.41 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee------------eEEeeCCcEEEEEeCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK------------TTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~v~d~p~~~ 80 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+........... .....++.+++++|.+.++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccC
Confidence 4455688999999999999999999999999998885443332211100 0001135688999999887
Q ss_pred CC
Q 038901 81 DL 82 (107)
Q Consensus 81 ~~ 82 (107)
+.
T Consensus 100 ~~ 101 (252)
T TIGR03005 100 PH 101 (252)
T ss_pred CC
Confidence 64
No 131
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.42 E-value=1.1e-13 Score=98.15 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=48.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+...+..........+.+..+++++|.+.+++.
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 34445678999999999999999999999999998885443322111100001112357899999887765
No 132
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=3.3e-13 Score=86.07 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=48.8
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.......+ ++++|+|+||||||||+++|+|+..+..|.+........... .....++..++++|.+.+++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPH 89 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCC
Confidence 34455567 999999999999999999999999998885433332211000 000113568899999988764
No 133
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=7.4e-14 Score=96.82 Aligned_cols=86 Identities=13% Similarity=-0.058 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
-.+....+...+|++-+|+|.||||||||+++|.|.+.|++|.+...+....-.....-.+.-+++|.|.+.+.+.
T Consensus 18 ~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~---- 93 (501)
T COG3845 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT---- 93 (501)
T ss_pred EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc----
Confidence 3455566777889999999999999999999999999999997665444322222112124568999999999987
Q ss_pred hHHHHHHHHHh
Q 038901 87 EFVGKEIVKCL 97 (107)
Q Consensus 87 ~~~~~~~~~~~ 97 (107)
.|+.|++-.-
T Consensus 94 -lTV~ENiiLg 103 (501)
T COG3845 94 -LTVAENIILG 103 (501)
T ss_pred -cchhhhhhhc
Confidence 7777776543
No 134
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.41 E-value=1.2e-13 Score=88.50 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+.............. ..+..+++++|.|.++.. .+.
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~ 99 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF-----LTA 99 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC-----CCH
Confidence 3445678999999999999999999999999998885433222111100000 113568899999988764 445
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 100 ~~n~~~ 105 (220)
T TIGR02982 100 RQNVQM 105 (220)
T ss_pred HHHHHH
Confidence 555444
No 135
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.41 E-value=1.1e-13 Score=99.51 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..-++|+.++|+|+||||||||++.|+|+. +..|.+..++..........+ ++.++++.|.|.+++.
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~l-r~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW-RKHLSWVGQNPQLPHG 437 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHH-HhheEEecCCCcCCCc
Confidence 344688999999999999999999999999 888865554443333222222 5679999999999875
No 136
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=2.8e-13 Score=85.38 Aligned_cols=74 Identities=15% Similarity=-0.024 Sum_probs=48.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+......... .......++.+.+.++.. .+..+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~-----~~~~~~~~~~~~~~~~~~-----~tv~~ 89 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN-----IAKPYCTYIGHNLGLKLE-----MTVFE 89 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh-----hhhhhEEeccCCcCCCcc-----CCHHH
Confidence 34456789999999999999999999999999988854332221110 012346677777766544 44444
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 90 ~l~~ 93 (195)
T PRK13541 90 NLKF 93 (195)
T ss_pred HHHH
Confidence 4433
No 137
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.41 E-value=1.3e-13 Score=87.52 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+..+++++|.|.+++
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~ 95 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-LRSSLTIIPQDPTLFS 95 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH-HHhhEEEEecCCcccC
Confidence 3455678999999999999999999999999998885443332211111111 1356899999997764
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.41 E-value=2.1e-13 Score=89.64 Aligned_cols=69 Identities=22% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG 78 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~ 78 (107)
........+|++++|+|+||||||||+++|+|+..+.+|.+.............. ..++.+++++|.|.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~ 98 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSP 98 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChh
Confidence 3444556788999999999999999999999999998885543332211111000 01346889999873
No 139
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.2e-13 Score=97.93 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=48.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+................+..+++++|.+.++..
T Consensus 24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 34455678999999999999999999999999988885433322111100000112458899998877654
No 140
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.41 E-value=3.5e-13 Score=85.42 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+.. ...++|++|.|.+++
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~--------------~g~i~~~~q~~~l~~ 79 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV--------------PGSIAYVSQEPWIQN 79 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEE--------------cCEEEEEecCchhcc
Confidence 334556678999999999999999999999999888874321 125677888877653
No 141
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.41 E-value=5.1e-13 Score=85.68 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+........ .. ..+..++++|.+.++.. .+..+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~---~~--~~~~~~~~~q~~~~~~~-----~t~~~ 89 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RK--DLHKIGSLIESPPLYEN-----LTARE 89 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc---cc--ccccEEEEcCCCCcccc-----CCHHH
Confidence 3445678999999999999999999999999988885433222111 01 12467889998877654 34555
Q ss_pred HHH
Q 038901 93 IVK 95 (107)
Q Consensus 93 ~~~ 95 (107)
++.
T Consensus 90 ~~~ 92 (223)
T TIGR03740 90 NLK 92 (223)
T ss_pred HHH
Confidence 544
No 142
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.41 E-value=3.4e-13 Score=85.03 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
.......+|++++|+|+||||||||+++|+|+. .+..|.+......... .. .+...++++|.+.++.. .
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~-~~~~i~~~~q~~~~~~~-----~ 97 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS-FRKIIGYVPQDDILHPT-----L 97 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh-hhheEEEccCcccCCCC-----C
Confidence 344556678999999999999999999999999 8888854333222111 11 24568899999887765 5
Q ss_pred HHHHHHHH
Q 038901 89 VGKEIVKC 96 (107)
Q Consensus 89 ~~~~~~~~ 96 (107)
+..+++.+
T Consensus 98 t~~~~i~~ 105 (194)
T cd03213 98 TVRETLMF 105 (194)
T ss_pred cHHHHHHH
Confidence 56665544
No 143
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.41 E-value=1.4e-13 Score=99.04 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..|..|.+..++.......... .++.++++.|+|.+++.
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-l~~~i~~v~Q~~~lF~~ 429 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV-LRQGVAMVQQDPVVLAD 429 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH-HHhheEEEccCCccccc
Confidence 3455678999999999999999999999999999886554444333222222 25789999999999975
No 144
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.41 E-value=2.2e-13 Score=89.08 Aligned_cols=78 Identities=17% Similarity=0.087 Sum_probs=52.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee------------eeEEeeCCcEEEEEeCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM------------KTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~v~d~p~~~ 80 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+.......... ......++..+|++|.+.++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 104 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 104 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccC
Confidence 344557899999999999999999999999998888544333221100 00011135689999999887
Q ss_pred CCCCCchHHHHHHHH
Q 038901 81 DLSAGSEFVGKEIVK 95 (107)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (107)
+. .++.+++.
T Consensus 105 ~~-----~sv~enl~ 114 (257)
T PRK10619 105 SH-----MTVLENVM 114 (257)
T ss_pred CC-----CcHHHHHH
Confidence 65 44444443
No 145
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6.1e-13 Score=83.50 Aligned_cols=79 Identities=16% Similarity=0.001 Sum_probs=58.4
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.+......+|+.++++||||||||||+|.++|+..|..|.+..+.. .+.-+....+.|+|.+.+.+- .+
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r------~i~gPgaergvVFQ~~~LlPW-----l~ 90 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR------RIEGPGAERGVVFQNEALLPW-----LN 90 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE------eccCCCccceeEeccCccchh-----hH
Confidence 3445566778999999999999999999999999998885432221 111124567899999999887 66
Q ss_pred HHHHHHHhhc
Q 038901 90 GKEIVKCLGM 99 (107)
Q Consensus 90 ~~~~~~~~~~ 99 (107)
..++..+-..
T Consensus 91 ~~dNvafgL~ 100 (259)
T COG4525 91 VIDNVAFGLQ 100 (259)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 146
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=4.8e-13 Score=86.33 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=48.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||+|||||+++|+|...+..|.+............ .+...++++|.+.++..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTVFQNYALFPH 86 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEEecccccCCC
Confidence 34455789999999999999999999999999988854332221111111 13568899999988764
No 147
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.2e-13 Score=91.18 Aligned_cols=64 Identities=17% Similarity=0.050 Sum_probs=45.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
....+|++++|+|+||||||||+++|+|+..++.|.+.............. .+..++|++|.|.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~ 89 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW-VRSKVGLVFQDPD 89 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHH-HHhhEEEEecChh
Confidence 445678999999999999999999999999998885443332211111111 1356889999873
No 148
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=3.2e-13 Score=85.85 Aligned_cols=75 Identities=13% Similarity=-0.021 Sum_probs=50.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+........ .. . .+...+++.+.+.++.. .+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~--~-~~~~~~~~~~~~~~~~~-----~tv~ 91 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DP--D-VAEACHYLGHRNAMKPA-----LTVA 91 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc-ch--h-hHhhcEEecCCCcCCCC-----CcHH
Confidence 34455678999999999999999999999999988885433322111 01 1 13456788777666544 4455
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 92 ~~l~ 95 (207)
T PRK13539 92 ENLE 95 (207)
T ss_pred HHHH
Confidence 5443
No 149
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.41 E-value=4.2e-13 Score=85.80 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+|+||||||||+++|+|+..+..|.+........... .....++..+|++|.|.+++
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 344578999999999999999999999999988885443332211110 00111346789999987764
No 150
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.5e-13 Score=90.48 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+...+.......... .++.+++++|.|.
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~ 93 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK-LRKHIGIVFQNPD 93 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHhheeEEEeChH
Confidence 3445688999999999999999999999999998885443332211111111 1346789999884
No 151
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=6.6e-13 Score=86.53 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=39.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
..+|++++|+|+||||||||+++|+|+..+..|.+... ...+.+++|.+.+.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~-------------g~~i~~~~q~~~~~ 73 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-------------LDTVSYKPQYIKAD 73 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC-------------CceEEEecccccCC
Confidence 34789999999999999999999999999888743211 12466777776644
No 152
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.40 E-value=9.5e-14 Score=99.62 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~v~Q~~~lf~~ 431 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL-RNQVALVSQNVHLFND 431 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHH-HhhceEEccCceeecc
Confidence 33445789999999999999999999999999999866554443332222222 4678999999998875
No 153
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.4e-13 Score=97.51 Aligned_cols=79 Identities=13% Similarity=0.004 Sum_probs=51.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+..+ ++|.+................+..+++++|.+.+++. .++
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv 99 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE-----LSV 99 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC-----CcH
Confidence 445567899999999999999999999999886 5665433222111100000113458899999877654 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 100 ~e~l~~ 105 (506)
T PRK13549 100 LENIFL 105 (506)
T ss_pred HHHhhh
Confidence 555443
No 154
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.40 E-value=4.2e-13 Score=86.52 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+ ++|.+......... .......+++++|.+.
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNPR 72 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCch
Confidence 344567899999999999999999999999988 67754333222111 1111246889999985
No 155
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.7e-13 Score=97.01 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.+.+++.
T Consensus 23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 34455678999999999999999999999999998885443222111000001113568899999877664
No 156
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.5e-13 Score=88.72 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...+|+++.+.+++
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 88 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS-LRRAIGVVPQDTVLFN 88 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHH-HHhhEEEECCCChhhc
Confidence 3445678999999999999999999999999988885433222111111101 1345788999887764
No 157
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.40 E-value=2.6e-13 Score=86.48 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+........ . .+..+++++|.+.+
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~-~~~~i~~v~q~~~~ 79 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K-ERKRIGYVPQRRSI 79 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H-HHhheEEecccccc
Confidence 34455678999999999999999999999999988885433222110 1 13567888888876
No 158
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.2e-13 Score=89.05 Aligned_cols=68 Identities=21% Similarity=0.104 Sum_probs=46.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. .++.+++++|.+.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 89 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS-LRRQIGLVSQDVFLFN 89 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHH-HHhhEEEeCCCCeecc
Confidence 3445678999999999999999999999999998885433222111101001 1345788888887664
No 159
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.40 E-value=1e-13 Score=101.08 Aligned_cols=70 Identities=23% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....-++|+.++|+|+||||||||+|.|+|+..|..|.+..++..........+ ++.+++|.|++.++..
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l-R~~ig~V~Q~~~Lf~g 561 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL-RRQVGYVLQDPFLFSG 561 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH-HhheeEEcccchhhcC
Confidence 345566789999999999999999999999999999977666655544443333 6889999999999876
No 160
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.39 E-value=1.6e-13 Score=88.74 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+.............. .+..+++++|.+.+++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 89 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW-LRRQVGVVLQENVLFN 89 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHH-HhhcEEEEcCCchhcc
Confidence 4445688999999999999999999999999998885443332111101001 1345788888887653
No 161
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.39 E-value=1.3e-13 Score=101.06 Aligned_cols=70 Identities=20% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....++|++++|+|+||||||||+++|+|+..+.+|.+..++.......... .++.++++.|.|.+++.
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-lr~~i~~v~Q~~~lF~g 569 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY-LHRQVALVGQEPVLFSG 569 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH-HHhhceEEecCcccccc
Confidence 34455689999999999999999999999999999986655444333322222 24678999999999875
No 162
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.4e-13 Score=88.55 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=47.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...+|+++.+.+++
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 90 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS-LRSMIGVVLQDTFLFS 90 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHH-HhhhEEEecCCchhhh
Confidence 34455678999999999999999999999999998885443322111101001 1345788888887654
No 163
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.39 E-value=1.9e-13 Score=84.67 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...++++|.+.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 89 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE-LGDHVGYLPQDDELFS 89 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHH-HHhheEEECCCCcccc
Confidence 3455678999999999999999999999999998885443332211111111 1356789999887764
No 164
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=2.1e-13 Score=84.34 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=47.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...+++++.+.+++
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~~~~~~~~ 89 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLES-LRKNIAYVPQDPFLFS 89 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHH-HHhhEEEEcCCchhcc
Confidence 34455678999999999999999999999999998885433332211111111 1346788899887764
No 165
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.39 E-value=1.3e-13 Score=89.25 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+.+|.+.............. .+...++++|.+.+++
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 90 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW-LRSQIGLVSQEPVLFD 90 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHH-HHhhEEEECCchhhhh
Confidence 34455678999999999999999999999999998885443332211111101 1245788888877653
No 166
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=7.3e-13 Score=85.66 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-.+|++++|+|+||+|||||+++|+|+..+..|.+........... ..+...++++|.+.+++.
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~---~~~~~i~~~~q~~~~~~~ 85 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP---PEKRDISYVPQNYALFPH 85 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC---hhHcCEEEEeecCccCCC
Confidence 3444578999999999999999999999999998885443332211111 113568899999888754
No 167
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.8e-13 Score=96.58 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=47.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+...+............+..+++++|.+.++..
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 4445678999999999999999999999999988885443222111000000113457899998876544
No 168
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.6e-13 Score=88.96 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeE--EeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
..-+++|+|+||||||||+|+|+|+..|+.|.+..+..+.... +.. ...+++++||||+.-+|++ ++++.++
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH-----~tVrgNL 97 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH-----YTVRGNL 97 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc-----eEEecch
Confidence 3378999999999999999999999999999665444332221 211 2235789999999999988 6776666
Q ss_pred HHhh
Q 038901 95 KCLG 98 (107)
Q Consensus 95 ~~~~ 98 (107)
.|-.
T Consensus 98 ~YG~ 101 (352)
T COG4148 98 RYGM 101 (352)
T ss_pred hhhh
Confidence 6544
No 169
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.39 E-value=2.1e-13 Score=87.31 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|...+..|.+.............. .++.+++++|.|.+++
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~ 91 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD-LRSRISIIPQDPVLFS 91 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHH-HhhhEEEECCCCcccc
Confidence 3445578999999999999999999999999998885433322211111111 1456889999887764
No 170
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.39 E-value=1.8e-13 Score=97.24 Aligned_cols=69 Identities=22% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||++.|+|+..+..|.+..+........... .++..+++.|.|.+++.
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~-lr~~i~~v~Q~~~lf~~ 410 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS-WRDQIAWVPQHPFLFAG 410 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH-HHhheEEEcCCCcccCc
Confidence 3455688999999999999999999999999999886554443322222212 24679999999998875
No 171
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.39 E-value=1.1e-13 Score=101.24 Aligned_cols=68 Identities=22% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g 567 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL-ANSVAMVDQDIFLFEG 567 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH-HhheeEEecCChhhhc
Confidence 3456789999999999999999999999999999865554443332222222 5789999999999865
No 172
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.39 E-value=2.3e-13 Score=89.83 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
......+|++++|+|+||||||||+++|+|+..+.
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 34455678999999999999999999999999876
No 173
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.39 E-value=2.7e-13 Score=85.80 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.......+|++++|+|+||||||||+++|+|+. .+..|.+................+...++++|.|.+++.
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 334556688999999999999999999999994 677775433322211111101112348899999887764
No 174
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.39 E-value=1.3e-13 Score=100.90 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|+||||||||++.|+|+..++.|.+..++..........+ ++.++++.|.|.+++.
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g 562 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL-RQFINYLPQEPYIFSG 562 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH-HHheEEEecCceehhH
Confidence 34456789999999999999999999999999999966555543333222222 5679999999999864
No 175
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=4.3e-13 Score=84.41 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=50.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+........ .. .+...++++|.+.++.. .++
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~-~~~~i~~~~q~~~~~~~-----~tv 96 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KN-FQRSTGYVEQQDVHSPN-----LTV 96 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HH-hhhceEEecccCccccC-----CcH
Confidence 34556789999999999999999999999753 56664332221111 11 23568899998887765 566
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 97 ~~~l~~ 102 (192)
T cd03232 97 REALRF 102 (192)
T ss_pred HHHHHH
Confidence 666654
No 176
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.39 E-value=2.2e-13 Score=97.94 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+.+++|+|.+++.
T Consensus 355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~ 423 (588)
T PRK13657 355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL-RRNIAVVFQDAGLFNR 423 (588)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH-HhheEEEecCcccccc
Confidence 34556789999999999999999999999999998865544443332222222 4679999999999875
No 177
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.38 E-value=5.4e-12 Score=73.27 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.|+|+|++|+|||||+|+|++......+. ..+.+.........+ ......++||||+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCccc
Confidence 48999999999999999999864333332 223333332233333 5667789999999875
No 178
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-13 Score=90.30 Aligned_cols=64 Identities=20% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
....+|++++|+|+||||||||+++|+|+..+.. |.+.............. .+..+++++|.|.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~-~~~~ig~v~q~~~ 94 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD-IREKVGIVFQNPD 94 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH-HHhheEEEEECHH
Confidence 4556789999999999999999999999998876 43322222111101001 1356889999984
No 179
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.8e-13 Score=98.40 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+.....++|++++||||||+||||+++.|.+++.|++|.+..++....+..+..+ ++++++|-|.|-++..
T Consensus 486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l-r~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL-RRKIGLVGQEPVLFSG 556 (716)
T ss_pred CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH-HHHeeeeeccceeecc
Confidence 3445567889999999999999999999999999999987777777666655444 6899999999999975
No 180
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.7e-13 Score=89.41 Aligned_cols=68 Identities=18% Similarity=0.033 Sum_probs=47.1
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p 77 (107)
........+|++++|+|+||||||||+++|+|+..+++|.+.......... ......+..+++++|.|
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeCh
Confidence 334455668899999999999999999999999999988544333221100 00011134688999987
No 181
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=1.2e-12 Score=93.72 Aligned_cols=67 Identities=18% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+... ....++|++|.|.+++. .++.
T Consensus 24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~------------~~~~i~~v~Q~~~~~~~-----~tv~ 86 (552)
T TIGR03719 24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA------------PGIKVGYLPQEPQLDPT-----KTVR 86 (552)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec------------CCCEEEEEeccCCCCCC-----CcHH
Confidence 344556789999999999999999999999998887743211 02468899999988765 4555
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 87 e~i~ 90 (552)
T TIGR03719 87 ENVE 90 (552)
T ss_pred HHHH
Confidence 5554
No 182
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.38 E-value=9.8e-13 Score=81.08 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=48.6
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+.... ...++|++|.+.++. .+.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~------------~~~i~~~~q~~~~~~------~tv 80 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE------------GEDLLFLPQRPYLPL------GTL 80 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------CceEEEECCCCcccc------ccH
Confidence 33455568899999999999999999999999988877432111 246778888876642 355
Q ss_pred HHHHH
Q 038901 91 KEIVK 95 (107)
Q Consensus 91 ~~~~~ 95 (107)
.+++.
T Consensus 81 ~~nl~ 85 (166)
T cd03223 81 REQLI 85 (166)
T ss_pred HHHhh
Confidence 55543
No 183
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.38 E-value=2.2e-13 Score=87.36 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=48.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc--ee--eEeeeeeE---EeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG--VT--TTCEMKTT---VLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~--~~--~~~~~~~~---~~~~~~~~~v~d~p~~~~~ 82 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+... .. ........ .......++++|.+.+++.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 104 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPR 104 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCC
Confidence 3345556789999999999999999999999999888854322 10 00000000 0112457899999887654
No 184
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=7e-13 Score=86.87 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee---ee--eEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE---MK--TTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~---~~--~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+...++.... .. .....+..+++++|.|.+++.
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~----- 104 (257)
T PRK14246 30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH----- 104 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC-----
Confidence 34455789999999999999999999999999888754322221110 00 000114568899999988765
Q ss_pred HHHHHHHH
Q 038901 88 FVGKEIVK 95 (107)
Q Consensus 88 ~~~~~~~~ 95 (107)
.++.+++.
T Consensus 105 ~tv~~nl~ 112 (257)
T PRK14246 105 LSIYDNIA 112 (257)
T ss_pred CcHHHHHH
Confidence 34455544
No 185
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.38 E-value=2.2e-13 Score=97.81 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|++++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|+|.+++.
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~ 428 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL-RQAISVVSQRVHLFSA 428 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH-HhheeEEcccchhhcc
Confidence 34556889999999999999999999999999999866554443332222222 4678999999998865
No 186
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.5e-13 Score=89.12 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=45.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+...+.......... .....++++|.|.
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~ 88 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRE-VRKFVGLVFQNPD 88 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHhheEEEecCcc
Confidence 3455678999999999999999999999999999885443332211101001 1346789999873
No 187
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.38 E-value=1.2e-12 Score=93.69 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=50.7
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+... ....+++++|.|.+++. .++
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~------------~~~~i~~v~Q~~~~~~~-----~tv 87 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA------------PGIKVGYLPQEPQLDPE-----KTV 87 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec------------CCCEEEEEecCCCCCCC-----CcH
Confidence 3444566789999999999999999999999998887743211 02457899999887765 455
Q ss_pred HHHHH
Q 038901 91 KEIVK 95 (107)
Q Consensus 91 ~~~~~ 95 (107)
.+++.
T Consensus 88 ~e~l~ 92 (556)
T PRK11819 88 RENVE 92 (556)
T ss_pred HHHHH
Confidence 55544
No 188
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.37 E-value=1.7e-13 Score=88.03 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=47.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+............ ......+++++|.+.+++
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~l~~ 101 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH-KYLHSKVSLVGQEPVLFA 101 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH-HHHHhhEEEEecccHHHh
Confidence 34556789999999999999999999999999988854332221111111 111356889999887653
No 189
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=3.5e-13 Score=83.05 Aligned_cols=83 Identities=17% Similarity=0.072 Sum_probs=60.8
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
........+|+.++||||+|||||||+-.++|+..+++|.+...++..... ....+..+++++|||...+.+.
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~---- 102 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN---- 102 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc----
Confidence 344556678899999999999999999999999999999765444332211 2223335789999999988877
Q ss_pred hHHHHHHHHHh
Q 038901 87 EFVGKEIVKCL 97 (107)
Q Consensus 87 ~~~~~~~~~~~ 97 (107)
++..|++..-
T Consensus 103 -ltAlENV~lP 112 (228)
T COG4181 103 -LTALENVALP 112 (228)
T ss_pred -chhhhhccch
Confidence 6666665443
No 190
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.37 E-value=3.1e-13 Score=86.43 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...++++|.+.++.
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 91 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD-LRRNIGYVPQDVTLFY 91 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHH-HHhhEEEeCCCCcccc
Confidence 3455678999999999999999999999999888885433332111101001 1345788888887664
No 191
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.37 E-value=4.1e-13 Score=87.51 Aligned_cols=71 Identities=11% Similarity=-0.033 Sum_probs=45.6
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
........+|++++|+|+||||||||+++|+|+.++ .|.+............... ....+|++|.+.++..
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~-~~~i~~v~q~~~~~~~ 83 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAEL-ARHRAYLSQQQTPPFA 83 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHH-hhheEEecccCccCCC
Confidence 344455668899999999999999999999999854 5643332221111010011 2347888888766544
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=6.4e-13 Score=86.96 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEee--eeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCE--MKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..+ +.|.+......... ..... .+..+++++|.+.+++.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~ 99 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA-VRRTIGMVFQRPNPFPT 99 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH-HhcceEEEccccccCCC
Confidence 3445567899999999999999999999999864 46643332221100 00011 13568899999887764
No 193
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=4.4e-13 Score=89.05 Aligned_cols=66 Identities=20% Similarity=0.085 Sum_probs=46.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee-EEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT-TVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+............ ....+..++|++|.|.
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~ 93 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPE 93 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCch
Confidence 34556789999999999999999999999999998854433322111100 0011357899999984
No 194
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=6e-13 Score=89.66 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=35.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS 52 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~ 52 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+..
T Consensus 44 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i 85 (320)
T PRK13631 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV 85 (320)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 334455688999999999999999999999999999885543
No 195
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=3.9e-13 Score=88.86 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=46.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+...+.......... ....+++++|.|.
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~ 91 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN-LRRKIGMVFQNPD 91 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHH-HhcceEEEEECHH
Confidence 34455678999999999999999999999999999885443332211111111 1356889999984
No 196
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=5.5e-13 Score=88.65 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p 77 (107)
........+|++++|+|+||||||||+++|+|+..+++|.+.......... ......+..+++++|.|
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence 344555668899999999999999999999999999988654433321100 00011145688999988
No 197
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=9.3e-13 Score=85.20 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
+.......+|+.++|+|+||||||||++.|+|+..+..|.+................++++++|+|.|..
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~ 90 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDD 90 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccc
Confidence 3445556678999999999999999999999999999986533333222101111235789999999943
No 198
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.36 E-value=3.8e-13 Score=95.14 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+ +.|.+................+..++|++|.+.+++.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 445567899999999999999999999999876 5664332222111000000113458899998876654
No 199
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.36 E-value=4.7e-13 Score=90.54 Aligned_cols=73 Identities=18% Similarity=0.098 Sum_probs=50.4
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCC--CCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTP--GLFDL 82 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p--~~~~~ 82 (107)
........+|++++|+|+||||||||+++|+|+..+++|.+...+......... ...++.+++++|.| .+++.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 344556678899999999999999999999999999888554433322111100 01135689999998 45543
No 200
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.36 E-value=2.4e-13 Score=99.35 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|+||||||||++.|+|+..+..|.+..++..........+ ++.++++.|.|.+++.
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l-r~~i~~v~Q~~~lf~~ 553 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL-RRNIGYVPQDPRLFYG 553 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH-HhccEEECCChhhhhh
Confidence 34456789999999999999999999999999999865554443332222222 5679999999998864
No 201
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=7.1e-13 Score=86.21 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+............ ...+..++|++|.|.+++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALRKNVGMVFQQPNVFV 92 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HHHhhhEEEEecCCcccc
Confidence 44556789999999999999999999999874 466644332222111111 111356899999988775
No 202
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.36 E-value=9.5e-13 Score=85.64 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=47.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+. .|.+.......... ......++.+++++|.+.+++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence 34455678999999999999999999999999876 67443322221110 000111356889999988765
No 203
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.36 E-value=1.3e-12 Score=85.22 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCC--ccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+ ..+..|.+.....................+++|.+.+++.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 3445567899999999999999999999997 4566775433222111111101111135677788766543
No 204
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=6.4e-13 Score=88.40 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee---eeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE---MKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+......... .......++.++|++|.|.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPE 95 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCch
Confidence 44556889999999999999999999999999998865443332110 0000011356889999873
No 205
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.35 E-value=2.7e-13 Score=97.21 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..+..|.+..+...........+ ++.+++++|+|.+++.
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~~~Q~~~lf~~ 428 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL-RARMALVPQDPVLFAA 428 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH-HHhceEEccCCccccc
Confidence 34556899999999999999999999999999988865443332222111122 3578999999999875
No 206
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=8.1e-13 Score=87.75 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTP 77 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p 77 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+............ ....+..+++++|.|
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecCh
Confidence 344556789999999999999999999999999998854433322111000 001145689999987
No 207
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=7.2e-13 Score=87.67 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTP 77 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p 77 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... .....+..++|++|.|
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence 3455678999999999999999999999999998885443332211100 0001134578999987
No 208
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=9.8e-13 Score=85.88 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=46.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+. .|.+.......... ......+..++|++|.+.++.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 34455688999999999999999999999998864 55433222211100 000111456899999987763
No 209
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=7.3e-13 Score=87.70 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=46.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+................++..++++|.|.
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChh
Confidence 3445567899999999999999999999999999988654433222111100111456889999884
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.35 E-value=2.7e-13 Score=84.36 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.......... ... .++..++++|.|.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~-~~~~i~~~~q~~~~~~ 88 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKA-LSSLISVLNQRPYLFD 88 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHH-HHhhEEEEccCCeeec
Confidence 345567899999999999999999999999999888543332211110 001 1356788898887764
No 211
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.35 E-value=7.8e-13 Score=86.74 Aligned_cols=78 Identities=18% Similarity=0.023 Sum_probs=50.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeee----eEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMK----TTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~----~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
.....+|++++|+|+||||||||+++|+|+..++. |.+...+....... .....+...++++|.+.+++.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~--- 100 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNR--- 100 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccC---
Confidence 44456789999999999999999999999998753 43322221111000 000113457899999888765
Q ss_pred chHHHHHHHH
Q 038901 86 SEFVGKEIVK 95 (107)
Q Consensus 86 ~~~~~~~~~~ 95 (107)
.++.+++.
T Consensus 101 --~tv~e~l~ 108 (262)
T PRK09984 101 --LSVLENVL 108 (262)
T ss_pred --CcHHHHHH
Confidence 45555554
No 212
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.35 E-value=3.1e-13 Score=96.75 Aligned_cols=68 Identities=24% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..-++|++++|+|+||+|||||+++|+|+..+..|.+..+........... .++...|+.|+|.+++.
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~-~~~~i~~v~Q~~~lf~~ 420 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS-LRRQVALVSQDVVLFND 420 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHH-HHhhceEEccCcccccc
Confidence 355678999999999999999999999999999886554443322222112 24678999999999875
No 213
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=1.3e-12 Score=85.10 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=46.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||+|||||+++|+|+..+. .|.+.......... ......+..++|++|.+.++..
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPT 99 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcC
Confidence 3455678999999999999999999999998753 45333222211100 0000113468899999887764
No 214
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.6e-12 Score=86.47 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee----eeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE----MKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+......... .......++.+++++|.|.
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 34456789999999999999999999999999988854433221110 0000111346889999874
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=85.14 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+.. + +.|.+.......... ......+..+++++|.+.++..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPA 99 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCc
Confidence 34556789999999999999999999999975 3 356433322211100 0001124568899999888764
No 216
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=1.4e-12 Score=83.85 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEe-CCCCCCCCCC
Q 038901 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID-TPGLFDLSAG 85 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d-~p~~~~~~~~ 85 (107)
....+......+|+.++|||+||||||||++.|+|.++|+.|.+.. ..++..+++ ..||.+.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v--------------~G~v~~li~lg~Gf~pe--- 103 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV--------------TGKVAPLIELGAGFDPE--- 103 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEE--------------cceEehhhhcccCCCcc---
Confidence 3455566777889999999999999999999999999999984221 233333333 2344443
Q ss_pred chHHHHHHHHHhhcc
Q 038901 86 SEFVGKEIVKCLGMA 100 (107)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (107)
.|.++++.+...+
T Consensus 104 --lTGreNi~l~~~~ 116 (249)
T COG1134 104 --LTGRENIYLRGLI 116 (249)
T ss_pred --cchHHHHHHHHHH
Confidence 7777777665544
No 217
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.34 E-value=4.5e-13 Score=96.09 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=50.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|+||||||||+++|+|+..+..|.+..+........... .++..+++.|.|.+++.
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-WRSRLAVVSQTPFLFSD 403 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH-HHhheEEEccCCeeccc
Confidence 3455688999999999999999999999999999886544333222111111 24668999999988764
No 218
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.34 E-value=6.5e-13 Score=81.67 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
......+|++++|+|+||+|||||+++|+|+..+..|.+.
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 3455668899999999999999999999999999888543
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.34 E-value=4.4e-13 Score=95.05 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=44.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.+
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCcc
Confidence 344556789999999999999999999999999888855433321110000000124578888873
No 220
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.33 E-value=4.9e-12 Score=80.84 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 34456789999999999999999999999999888853
No 221
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=3.1e-12 Score=91.14 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+.... ...+++++|.+.+++.
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP------------NERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC------------CCEEEEEeccCCcCCC
Confidence 344567899999999999999999999999988877432111 1347788888877654
No 222
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.33 E-value=5.5e-14 Score=83.76 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..+|++++|+|+||||||||+++|+|...+..|.+........... ....+....++.+.+.++..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 73 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-IEELRRRIGYVPQDPQLFPG 73 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-HHHHHHTEEEEESSHCHHTT
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-cccccccccccccccccccc
Confidence 3578999999999999999999999999988875432222211101 11124678899999777765
No 223
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.33 E-value=3.8e-12 Score=83.21 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=44.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+ +.|.+........ ......+.++|++|.+.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~---~~~~~~~~i~~v~q~~~ 89 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA---PCALRGRKIATIMQNPR 89 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc---ccccccceEEEEecCCc
Confidence 345567899999999999999999999999988 6775433222111 11111356889999985
No 224
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=86.51 Aligned_cols=66 Identities=20% Similarity=0.038 Sum_probs=45.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... .....+..+++++|.|.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 87 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChh
Confidence 3455678999999999999999999999999998885443332211000 00011346889999875
No 225
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.33 E-value=4.8e-13 Score=95.84 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|++++|+|+||||||||++.|+++..+..|.+..++..........+ ++.+.+++|.|.+++.
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l-r~~I~~V~Qd~~LF~~ 417 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL-RKRIGIVSQDPLLFSG 417 (567)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH-HHhccEEcccceeecc
Confidence 34466889999999999999999999999999988866554444333333222 5778899999999875
No 226
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=87.93 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=35.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+.
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE 65 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 34455668899999999999999999999999999888543
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.33 E-value=2e-12 Score=84.49 Aligned_cols=57 Identities=21% Similarity=0.116 Sum_probs=43.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.... ...+++++|.+.++.
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~------------~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------------KLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC------------ccCEEEecccccccc
Confidence 344567899999999999999999999999988877432110 235778888876654
No 228
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.33 E-value=4.9e-13 Score=94.65 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=45.4
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.|
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 3344556789999999999999999999999999888854433321111000001124578999986
No 229
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.32 E-value=1.7e-12 Score=79.41 Aligned_cols=64 Identities=33% Similarity=0.371 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
+++++|+|++|+|||||+|.|.+......+.+ ..+..+........+ ..-++++||||+-+...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE--TTSEEEECSHHHHT--G
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec--CCCcEEEECCCCCcccc
Confidence 48999999999999999999999865544422 123333333333333 34679999999976543
No 230
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.6e-12 Score=84.79 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=45.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. ++.|.+.......... ......+..+++++|.+.+++
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 44556789999999999999999999999864 3566433322211100 000011356889999987765
No 231
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.7e-12 Score=85.42 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ ..|.+........... .....+..+++++|.|.+++
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 345567899999999999999999999999864 5664433222111000 00111356789999988775
No 232
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.3e-12 Score=86.03 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=45.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee--eeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE--MKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+.. ++.|.+......... ..... .+..+++++|.+.+++
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~-~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE-VRRRIGMVFQQPNPFP 107 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH-HhhceEEEccCCccch
Confidence 344556889999999999999999999999976 355643322221100 00001 1346889999987764
No 233
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.3e-12 Score=84.59 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=46.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||+|||||+++|+|+..+ ..|.+.......... ......++.+++++|.+.++.
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS 102 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc
Confidence 445568899999999999999999999999876 455433222211100 000112356899999988764
No 234
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.32 E-value=1.5e-12 Score=85.26 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee-----EeeeeeEE---eeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT-----TCEMKTTV---LKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~-----~~~~~~~~---~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+...... ........ ..+...+|++|.+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 34456889999999999999999999999999988854433321 11100000 01245789999874
No 235
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.32 E-value=1.8e-12 Score=84.31 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+. .+..|.+................+..++++++.+.+++
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 3445678999999999999999999999995 57777443222211111100111235778888876554
No 236
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.32 E-value=1e-12 Score=93.84 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=50.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++..++++|.|.+++.
T Consensus 338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~ 406 (544)
T TIGR01842 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET-FGKHIGYLPQDVELFPG 406 (544)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH-HhhheEEecCCcccccc
Confidence 3455678999999999999999999999999999886544333222211111 24678999999988864
No 237
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.8e-12 Score=84.44 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+. .|.+................+...+|++|.+.+++
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 34455678999999999999999999999998753 45322222111000000111356889999988765
No 238
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.32 E-value=7.4e-13 Score=86.68 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+..+++++|.|.+++
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~-~~~~i~~v~q~~~l~~ 108 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT-LRSRLSIILQDPILFS 108 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH-HhhhEEEECCCCcccc
Confidence 345688999999999999999999999999988885443332211111101 1356788888887764
No 239
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2e-12 Score=85.52 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=45.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||+|||||+++|+|+..+ ..|.+................+..++|++|.+.+++
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 345567899999999999999999999999875 355332222111110000111356889999988765
No 240
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.4e-12 Score=84.41 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=45.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. ++.|.+......... .......++.+++++|.+.+++
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 34556789999999999999999999999975 356643332221110 0000111356889999987765
No 241
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.8e-12 Score=83.59 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----cCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~-----g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+.. |.+.......... ......+...+|++|.|.+++.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK 99 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC
Confidence 34456789999999999999999999999988763 5332222111100 0001124568999999987653
No 242
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=4.9e-13 Score=84.85 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+++.+.++|.||||||||+|+|+|...+++|.+...+.......... .....+.|+|.|-.... .+++.+
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~-RA~~larVfQdp~~gt~---~~lTie 100 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK-RANLLARVFQDPLAGTA---PELTIE 100 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH-HhhHHHHHhcchhhCCc---ccccHH
Confidence 34556678999999999999999999999999999996655444433322211 13457788898854322 238888
Q ss_pred HHHHHhh
Q 038901 92 EIVKCLG 98 (107)
Q Consensus 92 ~~~~~~~ 98 (107)
|++..+.
T Consensus 101 ENl~la~ 107 (263)
T COG1101 101 ENLALAE 107 (263)
T ss_pred HHHHHHH
Confidence 8877654
No 243
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.31 E-value=3.3e-12 Score=82.07 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
..+|++++|+|+||||||||+++|+|+..+.+|.+....... . . ..+.++|++|.|.+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~--~-~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP---G--K-GWRHIGYVPQRHEF 60 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc---h--H-hhCcEEEecccccc
Confidence 357899999999999999999999999998888543332211 0 1 13568899998866
No 244
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.9e-12 Score=83.45 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=46.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+ .+|.+.......... ......+...++++|.|.+++
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 3445567899999999999999999999999763 566433222211100 000111356889999988765
No 245
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.31 E-value=2.2e-12 Score=84.95 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPG 78 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~ 78 (107)
.......+|++++|+|+||||||||+++|+|+..+.+|.+............. ...+...++++|.+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 99 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI 99 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChh
Confidence 33445567899999999999999999999999999888544333221111100 001356889999883
No 246
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.5e-12 Score=85.98 Aligned_cols=66 Identities=20% Similarity=0.056 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+........... ........+++++|.|.
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 88 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPD 88 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChh
Confidence 4455688999999999999999999999999998885443332211000 00011356889999873
No 247
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.1e-13 Score=82.12 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=57.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
..-..|+.+.|.||||+|||||+++|+|+..+++|.+............ .+ .+...|+--.+++-. ++++.|+
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~-~~~l~yLGH~~giK~-----eLTa~EN 95 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SY-HQALLYLGHQPGIKT-----ELTALEN 95 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hH-HHHHHHhhccccccc-----hhhHHHH
Confidence 3445679999999999999999999999999999965543222111110 00 133445544555554 4999999
Q ss_pred HHHhhccCCC
Q 038901 94 VKCLGMAKDG 103 (107)
Q Consensus 94 ~~~~~~~~~~ 103 (107)
+.|+..++..
T Consensus 96 L~F~~~~~~~ 105 (209)
T COG4133 96 LHFWQRFHGS 105 (209)
T ss_pred HHHHHHHhCC
Confidence 9999887653
No 248
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.31 E-value=1.1e-12 Score=81.76 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=54.8
Q ss_pred ccccCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
.+.++++.......+++..+++||.||||||||.+.|+|++.|++|.+..+.... ......+...++-+++|+|.-
T Consensus 23 r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L-~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc-cccchHhhhhheeeeecCCcc
Confidence 3445666677777788899999999999999999999999999999654333221 112222234567788888854
No 249
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.6e-12 Score=86.24 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-eeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-EMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+...+.... ........+..++|++|.|.
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~ 92 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPD 92 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcc
Confidence 3455678999999999999999999999999998885443332211 00000011356889999884
No 250
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.9e-12 Score=83.48 Aligned_cols=69 Identities=16% Similarity=0.051 Sum_probs=45.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+......... .......+...++++|.+.+++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP 98 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence 34456789999999999999999999999986 246643322221110 0000111356889999988774
No 251
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2e-12 Score=93.65 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=49.8
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCC--CCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTP--GLFDL 82 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p--~~~~~ 82 (107)
........+|++++|+|+||||||||+++|+|+..++.|.+...+........ ....+..+.|++|.| .+++.
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 34455666889999999999999999999999999988865443322111100 001135689999998 35543
No 252
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.31 E-value=4.1e-11 Score=78.26 Aligned_cols=63 Identities=41% Similarity=0.544 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...+|+|+|++|+|||||+|+|+|......+. ....+.........+ ....+.++||||+.+.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLES 92 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcc
Confidence 34789999999999999999999987654432 223343333333333 4567899999999865
No 253
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.30 E-value=1e-12 Score=86.91 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=48.1
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.......+|++++|+|+||+|||||+++|+|+.. ..|.+.............. .+..+++++|.|.+++
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~-lr~~i~~v~q~~~lf~ 90 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQK-WRKAFGVIPQKVFIFS 90 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHH-HhhhEEEECCCcccch
Confidence 3345566889999999999999999999999987 5664443332221111111 1456899999998875
No 254
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.3e-12 Score=84.02 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=45.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+.. ++.|.+.......... ......+..++|++|.+.+++.
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK 116 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc
Confidence 34456789999999999999999999999754 4566433222211100 0000113568999999887653
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.1e-12 Score=85.23 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+......... .......+|++|.|.+
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~ 89 (272)
T PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVAYVPQSEEV 89 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEEEecccccc
Confidence 34556789999999999999999999999999988854332221110 1112346778777654
No 256
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.30 E-value=1.4e-12 Score=93.81 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..-++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++..++++|.|.+++.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~ 423 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-LRKSIATVFQDAGLFNR 423 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-HHhheEEEccCCccCcc
Confidence 445678999999999999999999999999999886543332221111111 24678999999988764
No 257
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2e-12 Score=87.36 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=48.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPG 78 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~ 78 (107)
.........+|++++|+|+||||||||+++|+|+..+.+|.+............ ....++.+++++|.|.
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~ 102 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY 102 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCch
Confidence 444555667899999999999999999999999999888854433322211110 0011356899999983
No 258
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.3e-12 Score=82.85 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ ..|.+.......... ......+..+++++|.+.+++
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 100 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP 100 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence 344567899999999999999999999998652 245333222211110 001111356889999988764
No 259
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.5e-12 Score=83.50 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ +.|.+........... .....++..+|++|.+.++.
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 344567899999999999999999999999874 5664333222111000 00011356889999988765
No 260
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.30 E-value=9.2e-13 Score=96.35 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=51.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~-r~~i~~v~q~~~lf~~ 545 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL-RRQMGVVLQENVLFSR 545 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH-HHhCeEEccCCeehhh
Confidence 4456789999999999999999999999999999866554443332222222 4678899999988864
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.30 E-value=3.3e-12 Score=90.81 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc-eee---Eeeeee--EEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG-VTT---TCEMKT--TVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~-~~~---~~~~~~--~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+... ... ...... ....+..++|++|.+.+++.
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 379 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPH 379 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCC
Confidence 344566789999999999999999999999999888854331 110 000000 00113457899999877664
No 262
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.5e-12 Score=84.11 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=46.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. ++.|.+.......... ......+..++|++|.+.++.
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 118 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP 118 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence 34556789999999999999999999999986 4666443322211100 000111356899999988765
No 263
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=4.1e-12 Score=82.82 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||+|||||+++|+|+..+ ..|.+........... .....+...++++|.+.+++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 344567899999999999999999999999764 4564333222211100 00011356899999988765
No 264
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=1.4e-13 Score=86.22 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=65.5
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce-eeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV-TTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
+.+.........+|+.-+|||||||||||++.+|+|...+..|...... +...........+.-++.=+|+|.+++.
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~-- 95 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN-- 95 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh--
Confidence 4556666777788899999999999999999999999999988544333 2222222112223456778899999988
Q ss_pred CchHHHHHHHHHhhcc
Q 038901 85 GSEFVGKEIVKCLGMA 100 (107)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (107)
.+++++++.....
T Consensus 96 ---ltV~eNLelA~~~ 108 (249)
T COG4674 96 ---LTVRENLELALNR 108 (249)
T ss_pred ---ccHHHHHHHHhcC
Confidence 8899998876543
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.29 E-value=5.9e-13 Score=94.23 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=43.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.+................+..+++++|.|
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence 34556789999999999999999999999999888854433221110000001124567888876
No 266
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.7e-12 Score=83.84 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ +.|.+........... .....+..+++++|.+.++.
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 114 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA 114 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence 344567899999999999999999999999863 5664332222111000 00011356899999987764
No 267
>PRK00098 GTPase RsgA; Reviewed
Probab=99.29 E-value=8.4e-12 Score=83.41 Aligned_cols=63 Identities=30% Similarity=0.332 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+.+++|+|+||+|||||+|+|++......|.+. .+..+......... ...++++||||+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PGGGLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CCCcEEEECCCcCcc
Confidence 4689999999999999999999998877766432 12222222222222 345699999999853
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.1e-12 Score=93.55 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i 73 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence 3445556789999999999999999999999998888754
No 269
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.29 E-value=5.7e-12 Score=83.63 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=41.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+.. ...++|++|.+.+++
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i--------------~g~i~yv~q~~~l~~ 111 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH--------------SGRISFSSQFSWIMP 111 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------CCEEEEEeCcccccc
Confidence 3445688999999999999999999999999888774321 224667777766554
No 270
>PTZ00243 ABC transporter; Provisional
Probab=99.29 E-value=1.1e-12 Score=102.38 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+|++++|+|++|||||||+++|+++..+..|.+..++..........+ ++.+++++|+|.+++.
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L-R~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL-RRQFSMIPQDPVLFDG 1398 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH-HhcceEECCCCccccc
Confidence 3456889999999999999999999999999999976655554443333233 5789999999999875
No 271
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=4.4e-12 Score=82.64 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=44.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ ..|.+.......... ......+..+++++|.+.+++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14240 23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP 97 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence 344567899999999999999999999998652 355433222211100 000011346889999988765
No 272
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.29 E-value=2.2e-11 Score=74.29 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=42.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.|+|+|.+++|||||||+|+|.....+. ..+.|.........+ ......++|+||+++...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSS 62 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE----SSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECCCcccCCC
Confidence 5899999999999999999999865433 344555554444454 578999999999987643
No 273
>PLN03232 ABC transporter C family member; Provisional
Probab=99.28 E-value=1.2e-12 Score=101.88 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+++||+|+||||||||+++|+++..+..|.+..++..........+ ++++.+++|+|.+++.
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~iVpQdp~LF~g 1324 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL-RRVLSIIPQSPVLFSG 1324 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH-HhhcEEECCCCeeeCc
Confidence 3446789999999999999999999999999999976555544333332233 5789999999999865
No 274
>PLN03130 ABC transporter C family member; Provisional
Probab=99.28 E-value=1.7e-12 Score=101.61 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=54.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+++||+|+||||||||+++|+++..+..|.+..++..........+ ++++++++|+|.+++.
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL-RKVLGIIPQAPVLFSG 1327 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH-HhccEEECCCCccccc
Confidence 34556789999999999999999999999999999976655544443333233 5789999999999865
No 275
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=7.5e-12 Score=83.13 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=46.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+...+...... ......+...++++|.+.++.
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP 133 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence 34456789999999999999999999999986 4666443322211100 000111456889999987765
No 276
>PLN03211 ABC transporter G-25; Provisional
Probab=99.28 E-value=4.6e-12 Score=92.27 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFK--ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
...+|++++|+||||||||||+++|+|...+. +|.+..++.... ... .+..+++.|.+.+++. .+++|
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~-~~~i~yv~Q~~~l~~~-----lTV~E 159 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI-LKRTGFVTQDDILYPH-----LTVRE 159 (659)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhh-ccceEEECcccccCCc-----CCHHH
Confidence 45678999999999999999999999998764 554333222111 111 3468999999988876 67777
Q ss_pred HHHHhh
Q 038901 93 IVKCLG 98 (107)
Q Consensus 93 ~~~~~~ 98 (107)
++.+..
T Consensus 160 ~l~~~a 165 (659)
T PLN03211 160 TLVFCS 165 (659)
T ss_pred HHHHHH
Confidence 776643
No 277
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.28 E-value=2.4e-12 Score=86.93 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=46.7
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901 24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (107)
Q Consensus 24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~ 97 (107)
|+|+||||||||+++|+|+..+++|.+........... ..++.+++++|.+.+++. .++.+++.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~---~~~~~i~~v~q~~~l~~~-----~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP---PHLRHINMVFQSYALFPH-----MTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEecCccccCC-----CcHHHHHHHH
Confidence 68999999999999999999999885443332211111 113568999999988876 5666666543
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.27 E-value=4.2e-12 Score=100.65 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+...+..... .... .++.+++++|.+.+++. .+++
T Consensus 1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~-~r~~IGy~pQ~~~L~~~-----LTv~ 2030 (2272)
T TIGR01257 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISD-VHQNMGYCPQFDAIDDL-----LTGR 2030 (2272)
T ss_pred eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHH-HhhhEEEEeccccCCCC-----CCHH
Confidence 344556789999999999999999999999999999865443322111 0001 13568999999998876 6777
Q ss_pred HHHHHhhc
Q 038901 92 EIVKCLGM 99 (107)
Q Consensus 92 ~~~~~~~~ 99 (107)
|++.+...
T Consensus 2031 E~L~l~a~ 2038 (2272)
T TIGR01257 2031 EHLYLYAR 2038 (2272)
T ss_pred HHHHHHHH
Confidence 77765443
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.27 E-value=9.7e-13 Score=93.09 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=44.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.......+|++++|+|+||||||||+++|+|+..+ .+|.+................+..+++++|.+
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 34556678899999999999999999999999985 67754332221110000001134578888885
No 280
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4e-12 Score=83.26 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=44.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+|++++|+|+||||||||+++|+|+..+ ..|.+...+...... ......+..++|++|.+.+++.
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 107 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ 107 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc
Confidence 34567899999999999999999999999762 355433222211100 0000113568899999887653
No 281
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.27 E-value=4.6e-12 Score=78.93 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS 52 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~ 52 (107)
...+|++++|+|+||||||||+++|+|+..++.|.+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 58 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEE
Confidence 45678999999999999999999999999998885443
No 282
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=5.4e-12 Score=83.84 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+.......... ......+..++|++|.|.+++
T Consensus 59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (286)
T PRK14275 59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP 133 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence 34556789999999999999999999999753 3666443322211100 000011356889999988764
No 283
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=87.40 Aligned_cols=58 Identities=22% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|.++||||+||+||||||++|+|...++.|.+... ..-++.++.|.+.+.+.
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~------------~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP------------KGLRVGYLSQEPPLDPE 80 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec------------CCceEEEeCCCCCcCCC
Confidence 34455679999999999999999999999998888742210 12367888888888765
No 284
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=7.9e-12 Score=81.49 Aligned_cols=70 Identities=19% Similarity=0.093 Sum_probs=45.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+.. + .+|.+.......... ......+..+++++|.+.+++
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 344556789999999999999999999999843 4 356433322211100 000111356899999988765
No 285
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.1e-12 Score=86.52 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG 78 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~ 78 (107)
.........+|++++|+|+||||||||+++|+|+..+ +.|.+...+......... ...++.+.+++|.|.
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 3444556678899999999999999999999999863 455333222211111100 111246889999986
No 286
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.26 E-value=3.4e-12 Score=86.34 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG 78 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~ 78 (107)
.........+|++++|+|+||||||||+++|+|+..+. +|.+...+......... .+..+.+.+++|.|.
T Consensus 32 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 34445566788999999999999999999999999875 56433333221111100 011246899999983
No 287
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=7e-12 Score=82.16 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=45.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+ +.|.+.......... ......+..+++++|.+.+++
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 3445567899999999999999999999999774 245433222211100 000111356899999988765
No 288
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.26 E-value=8.8e-12 Score=89.33 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC-CCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP-GLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p-~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+..+. ...++|++|.+ .++.
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~------------~~~i~~v~q~~~~~~~ 401 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE------------TVKLAYVDQSRDALDP 401 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC------------ceEEEEEeCchhhcCC
Confidence 445567899999999999999999999999988877432111 11467888875 4444
No 289
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.6e-12 Score=92.14 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=44.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.......+|++++|+|+||||||||+++|+|+.. +++|.+................+..++|++|.+
T Consensus 280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence 3445667889999999999999999999999988 477754432221110000000123578888885
No 290
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.26 E-value=1.4e-11 Score=81.07 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
......+|++++|+|+||||||||+++|+|+..+..|.
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~ 80 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 34455688999999999999999999999999988874
No 291
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.26 E-value=2.7e-12 Score=100.16 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+++||+|++|||||||+++|+++..+..|.+..++..........+ ++++.+++|+|.+++.
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L-R~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL-RFKITIIPQDPVLFSG 1374 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH-HhcCeEECCCCcccCc
Confidence 34556889999999999999999999999999999976655555444333232 5789999999999875
No 292
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=8.9e-12 Score=84.29 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+|++++|+|+||||||||+++|+|+... ..|.+...+....... .....+..+++++|.|.++..
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ 177 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM 177 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC
Confidence 44567899999999999999999999999863 4553322222111000 001124678999999988753
No 293
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.25 E-value=1.7e-12 Score=92.80 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=50.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...-++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++.++++.|.|.+++.
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~ 411 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED-YRKLFSAVFTDFHLFDQ 411 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH-HhhheEEEecChhHHHH
Confidence 3445688999999999999999999999999999986554443322211112 24678899999987754
No 294
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.25 E-value=6e-12 Score=82.13 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+.
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3455567899999999999999999999999999888543
No 295
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.25 E-value=1.7e-11 Score=81.61 Aligned_cols=62 Identities=31% Similarity=0.319 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+.+++++|+||+|||||+|.|++......|.+.. +..+........ ....++++||||+.+.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~--~~~~~~liDtPG~~~~ 226 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP--LPGGGLLIDTPGFREF 226 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE--cCCCCEEEECCCCCcc
Confidence 3789999999999999999999998877664321 111222222222 2335689999999553
No 296
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.4e-12 Score=82.02 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEe---eeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTC---EMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~---~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|++++|+|+||||||||+++|+|+..+ ++|.+........ ........+..+++++|.+.++..
T Consensus 36 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 113 (265)
T PRK14252 36 NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK 113 (265)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc
Confidence 344567899999999999999999999999864 4453222111100 000001113567899999887753
No 297
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.7e-12 Score=82.81 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+ +.|.+......... .......+..+++++|.+.+++
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 104 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP 104 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence 3455567899999999999999999999998652 45643322221100 0000111356889999987764
No 298
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.24 E-value=1.9e-12 Score=91.88 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=34.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
......+|++++|+|+||||||||+++|+|+..+..|.+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 321 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM 321 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence 4445567899999999999999999999999998888543
No 299
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.24 E-value=1.4e-11 Score=88.25 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.....+|++++|+|+||||||||+++|+|+..+.+|.
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~ 378 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT 378 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 3445678999999999999999999999999888774
No 300
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=1.8e-12 Score=86.23 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=63.0
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
.......+.|++++|+|-||||||||+++|.+++.++.|.+........... ...+.+++..+|||..+++++
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh---- 120 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH---- 120 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc----
Confidence 3455667789999999999999999999999999999996654444332222 122335678999999999988
Q ss_pred hHHHHHHHHHhh
Q 038901 87 EFVGKEIVKCLG 98 (107)
Q Consensus 87 ~~~~~~~~~~~~ 98 (107)
.++.++..|-.
T Consensus 121 -rtVl~Nv~fGL 131 (386)
T COG4175 121 -RTVLENVAFGL 131 (386)
T ss_pred -hhHhhhhhcce
Confidence 66666665543
No 301
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.4e-11 Score=80.35 Aligned_cols=69 Identities=20% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. + .+|.+.......... ......+..+++++|.+.+++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 99 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP 99 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence 34456789999999999999999999999864 3 355433222211100 000011356889999988765
No 302
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=5e-12 Score=85.40 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeee---EEeeCCcEEEEEeCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPG 78 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~ 78 (107)
.........+|++++|+|+||||||||+++|+|+..+ ++|.+...+........ ....++.+++++|.|.
T Consensus 23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 3444566778899999999999999999999999864 45533332222111110 0111246899999984
No 303
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=8.7e-12 Score=81.31 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeeeeeE-EeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEMKTT-VLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++++|+|+||||||||+++|+|+.. +..|.+............. ...+...+|++|.+.+++.
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK 100 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC
Confidence 344556789999999999999999999999975 2456433222111100000 0113568899999887653
No 304
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.24 E-value=7.2e-12 Score=89.26 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCC--CCCCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG--LFDLSAG 85 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~--~~~~~~~ 85 (107)
........+|++++|+|+||||||||+++|+|+.+ ..|.+...+.......... ..+..+++++|.+. +++.
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~--- 378 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR--- 378 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc---
Confidence 34455667889999999999999999999999985 6664433222111100000 01345789999873 4443
Q ss_pred chHHHHHHHH
Q 038901 86 SEFVGKEIVK 95 (107)
Q Consensus 86 ~~~~~~~~~~ 95 (107)
.++.+++.
T Consensus 379 --~tv~e~l~ 386 (529)
T PRK15134 379 --LNVLQIIE 386 (529)
T ss_pred --ccHHHHHH
Confidence 34455443
No 305
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=3.9e-12 Score=83.18 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=42.1
Q ss_pred ccCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce
Q 038901 5 VIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV 54 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~ 54 (107)
.+++..+.....++|++++++|+|||||||+++.|+|+..|++|.+...+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 34566666778889999999999999999999999999999999655433
No 306
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=81.80 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+..+ .+|.+.......... ......+...++++|.+.+++
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 119 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP 119 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence 345567899999999999999999999999763 566433322211100 000111456889999987765
No 307
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=81.87 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=45.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+ ..|.+.......... ......+..++|++|.+.++.
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~ 114 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP 114 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence 3445567899999999999999999999999753 355332222111100 000011356889999988764
No 308
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1e-11 Score=83.21 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+.. +..|.+........... .....+..++|++|.+.+++
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 139 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP 139 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence 34456789999999999999999999999975 45664333222111000 00011356889999987664
No 309
>PLN03140 ABC transporter G family member; Provisional
Probab=99.23 E-value=1.4e-11 Score=95.85 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=57.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
....++|+.++|+||||||||||+++|+|...+. .|.+...+..... .. .++..+|+.|.+.+++. ++
T Consensus 185 s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~~-~~~~i~yv~Q~d~~~~~-----lT 255 (1470)
T PLN03140 185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---FV-PRKTSAYISQNDVHVGV-----MT 255 (1470)
T ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---hc-ccceeEEecccccCCCc-----Cc
Confidence 3445678999999999999999999999998776 4543322221111 11 14568999999888776 88
Q ss_pred HHHHHHHhhcc
Q 038901 90 GKEIVKCLGMA 100 (107)
Q Consensus 90 ~~~~~~~~~~~ 100 (107)
++|++.+...+
T Consensus 256 V~EtL~f~a~~ 266 (1470)
T PLN03140 256 VKETLDFSARC 266 (1470)
T ss_pred HHHHHHHHHHh
Confidence 99998876543
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.7e-11 Score=87.43 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=40.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~ 78 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+.... +..++|++|.+.
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~------------~~~i~~~~q~~~ 392 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE------------NANIGYYAQDHA 392 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC------------ceEEEEEccccc
Confidence 345567899999999999999999999999988877432111 235677877764
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.23 E-value=3.1e-12 Score=99.44 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.....++|++++|+|+||||||||++.|++++.+
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3445567899999999999999999999999987
No 312
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.23 E-value=1.1e-11 Score=88.39 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG 78 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~ 78 (107)
.......+|++++|+|+||||||||+++|+|+..+ ++|.+............. .+.+..+++++|.|.
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 33445567899999999999999999999999986 456433222211111000 011246899999875
No 313
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.23 E-value=1.8e-11 Score=88.99 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 376 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 44556789999999999999999999999998888743
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=9.4e-12 Score=98.76 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=57.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+...+..... .... .++.+++++|.+.+++. .++.+
T Consensus 950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~-~r~~IG~~pQ~~~L~~~-----LTV~E 1022 (2272)
T TIGR01257 950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDA-VRQSLGMCPQHNILFHH-----LTVAE 1022 (2272)
T ss_pred EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHH-HhhcEEEEecCCcCCCC-----CCHHH
Confidence 34456789999999999999999999999999998854433322111 1111 13568999999988876 67777
Q ss_pred HHHHhhc
Q 038901 93 IVKCLGM 99 (107)
Q Consensus 93 ~~~~~~~ 99 (107)
++.+...
T Consensus 1023 ~L~f~~~ 1029 (2272)
T TIGR01257 1023 HILFYAQ 1029 (2272)
T ss_pred HHHHHHH
Confidence 7766543
No 315
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2e-11 Score=80.16 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......+|++++|+|+||||||||+++|+|+..+. .|.+.......... ......+...+++++.+.+++
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 34556688999999999999999999999999875 23211111110000 000111356888999887765
No 316
>COG1159 Era GTPase [General function prediction only]
Probab=99.22 E-value=7.9e-11 Score=77.69 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
-.++|+|++++|||||+|.|+|...... +....|+......+.........++||||+...
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc
Confidence 4699999999999999999999876543 334555544444444445778899999999865
No 317
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.5e-11 Score=80.08 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+|+||+|||||+++|+|+.. ++.|.+.......... ......+..++|++|.|.++.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 3445789999999999999999999999854 2556433222211100 000011356899999988775
No 318
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.5e-11 Score=80.19 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=44.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc---cc--cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR---AF--KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~---~~--~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....+|++++|+|+||||||||+++|+|+. ++ +.|.+........... .....+..++|++|.+.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP 97 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence 3445678999999999999999999999863 33 3564332222111100 00111346899999987764
No 319
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.21 E-value=9e-11 Score=71.60 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
....++++|++|+|||||+|+|.+......+.. .+.+.... ........+++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~----~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQ----YITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEE----EEEcCCCEEEEECcCC
Confidence 346789999999999999999999766555432 22232221 1112345799999995
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.20 E-value=3.7e-12 Score=99.03 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=57.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC-ceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....++|++++|+|+||||||||+++|+|++.++.|.+.. +........ ..+.++.+++|.|.|.+++ .+.
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~-~~~lr~~Ig~V~Q~~~LF~------~TI 476 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN-LKWWRSKIGVVSQDPLLFS------NSI 476 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC-HHHHHHhccEecccccchh------ccH
Confidence 33455678999999999999999999999999999986544 222111111 1222467899999999986 367
Q ss_pred HHHHHHh
Q 038901 91 KEIVKCL 97 (107)
Q Consensus 91 ~~~~~~~ 97 (107)
.+++.+.
T Consensus 477 ~eNI~~g 483 (1466)
T PTZ00265 477 KNNIKYS 483 (1466)
T ss_pred HHHHHhc
Confidence 7777663
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.5e-11 Score=78.68 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
......+|++.+|+||||||||||.++|+|...+ +.|.+...+.........+..+.-++.-+|.|.=.+.
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 3445567899999999999999999999998754 4554443343333333222223457788888876655
No 322
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.2e-12 Score=87.84 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=50.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.+||+|+|||||||++|+|++... .+|.+..++.......... .++.+++++|+..+++.
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S-lR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES-LRQSIGVVPQDSVLFND 439 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH-hhhheeEeCCcccccch
Confidence 34456789999999999999999999999988 6665555454433333222 26789999999888864
No 323
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.8e-12 Score=89.33 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=53.9
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
........+|++++|+|++|||||||+..|+|...+..|.+..............+ ++.+.++.|.+.+++.
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~-~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL-RETISVLTQRVHLFSG 426 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH-HHHHhhhccchHHHHH
Confidence 34455667899999999999999999999999999999976555544333332222 3467788898888864
No 324
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.20 E-value=1.3e-11 Score=89.76 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=50.5
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~ 82 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+.............. ..++..++++|.+.+++.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 334455688999999999999999999999999998885443332211111000 113568999999988765
No 325
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=4.6e-12 Score=95.64 Aligned_cols=70 Identities=19% Similarity=0.105 Sum_probs=56.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+.|+.++|||+|||||||+++.|.+++.|..|.+..++....... ..|.+..++.|.|.|.++..
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~-~~~lr~~iglV~QePvlF~~ 441 (1228)
T KOG0055|consen 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN-LKWLRSQIGLVSQEPVLFAT 441 (1228)
T ss_pred eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcc-hHHHHhhcCeeeechhhhcc
Confidence 34455678999999999999999999999999999997666555544333 34557789999999988875
No 326
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.20 E-value=9.6e-12 Score=96.98 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|++++|+|+||||||||+++|+|+.. ..|.+..++..........+ ++...+++|.|.+++.
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l-R~~is~IpQdp~LF~G 1306 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW-RKAFGVIPQKVFIFSG 1306 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH-HhceEEEeCCCccCcc
Confidence 3456789999999999999999999999986 56755444443333222222 5789999999999975
No 327
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.20 E-value=1.3e-11 Score=89.46 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=55.9
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
......++|+.++|+||||||||||+++|+|...+. .|.+..++.... ... .++..+|+.|.+.+++.
T Consensus 43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~-~~~~i~yv~Q~~~~~~~----- 113 (617)
T TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKE-MRAISAYVQQDDLFIPT----- 113 (617)
T ss_pred CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHH-HhhhceeeccccccCcc-----
Confidence 344456688999999999999999999999987653 332222221110 011 24568999999988876
Q ss_pred HHHHHHHHHhhcc
Q 038901 88 FVGKEIVKCLGMA 100 (107)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (107)
.+++|++.+....
T Consensus 114 lTV~e~l~f~~~~ 126 (617)
T TIGR00955 114 LTVREHLMFQAHL 126 (617)
T ss_pred CcHHHHHHHHHhc
Confidence 7888888765543
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.19 E-value=4.1e-12 Score=89.75 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
.......+|++++|+|+||||||||+++|+|+..++.|.+.
T Consensus 21 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~ 61 (490)
T PRK10938 21 LPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61 (490)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence 33455567899999999999999999999999999888543
No 329
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.19 E-value=9e-12 Score=75.51 Aligned_cols=64 Identities=20% Similarity=0.081 Sum_probs=44.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc---CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS---AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..+|+++-|+||+|||||||+..+.|.....-. ....+.+.... ....++++++++|++-++++
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~---lPa~qRq~GiLFQD~lLFph 91 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM---LPAAQRQIGILFQDALLFPH 91 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc---cchhhhheeeeecccccccc
Confidence 456899999999999999999999998765422 11112211111 12235789999999999876
No 330
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.1e-12 Score=82.33 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=33.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
..-++|.+.+|+||||||||||+..++++...++|.+.
T Consensus 22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~ 59 (252)
T COG4604 22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59 (252)
T ss_pred eeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE
Confidence 34456799999999999999999999999999998543
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.19 E-value=6e-11 Score=78.66 Aligned_cols=65 Identities=32% Similarity=0.351 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.+.+.+|+|+||+|||||+|.|.+......|.+ ..+..+..+...... ..-++++||||+.+...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccCc
Confidence 457999999999999999999998665554432 233344333333333 35679999999976543
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.19 E-value=2.3e-11 Score=73.41 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||+|||||+++|+|+..+..|.+
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 44556789999999999999999999999999888854
No 333
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.19 E-value=4.7e-11 Score=87.11 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=44.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|++++|+|+||||||||+++|+|+.++..|.+... .+...++++|.|.+++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~------------~~~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AKGKLFYVPQRPYMTLG 529 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec------------CCCcEEEECCCCCCCCc
Confidence 3445789999999999999999999999988877642211 13568899999877653
No 334
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.19 E-value=2.8e-11 Score=85.62 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=51.8
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee-EeeeeeEEeeCCcEEEEEeCCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT-TCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
+.......+...+|++++|||+||||||||.++|+|+..+++|.+...+.. ..........+.++-++||.|..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 445666677788999999999999999999999999999988854433322 11111111123567788888855
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.18 E-value=2.3e-11 Score=79.67 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
..+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I 57 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF 57 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 56889999999999999999999999999999865
No 336
>PRK13409 putative ATPase RIL; Provisional
Probab=99.18 E-value=4.2e-11 Score=86.39 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=45.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHH
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~ 95 (107)
..+|++++|+|+||||||||+++|+|+..++.|.+... ..++|++|.+.+... .++.+++.
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--------------~~i~y~~Q~~~~~~~-----~tv~e~l~ 422 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------------LKISYKPQYIKPDYD-----GTVEDLLR 422 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------------eeEEEecccccCCCC-----CcHHHHHH
Confidence 36789999999999999999999999998887743211 146677777665433 45555544
Q ss_pred H
Q 038901 96 C 96 (107)
Q Consensus 96 ~ 96 (107)
+
T Consensus 423 ~ 423 (590)
T PRK13409 423 S 423 (590)
T ss_pred H
Confidence 3
No 337
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=4.8e-10 Score=81.10 Aligned_cols=62 Identities=39% Similarity=0.527 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
.+|+|+|++|+|||||+|.|+|...+.... ....++........+ ....+.|+||||+.+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss-~~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDA-FGMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSA 180 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccC-CCCCceEEEEEEEEE-CCceEEEEECCCCCccc
Confidence 579999999999999999999987655442 223343332222222 56788999999999763
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1.9e-11 Score=74.57 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
..-.+|++++|+|+||+|||||+++|+|...+..|.+.
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~ 57 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 34457799999999999999999999999988877443
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.16 E-value=6e-12 Score=90.14 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=49.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
...++|++++|+|+||||||||++.|+|+..++.|.+..++.......... .+....++.|.|.+++..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~t 431 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD-YRDLFSAIFADFHLFDDL 431 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH-HHhhCcEEccChhhhhhh
Confidence 455688999999999999999999999999999986554433222211111 135678889988877543
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.16 E-value=1.7e-11 Score=85.76 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+|+.++||||||||||||.+.|.|.-.+..|.++.+.....+..... ..++++|++|.--+++.
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~-lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ-LGRHIGYLPQDVELFDG 424 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH-hccccCcCcccceecCC
Confidence 345578999999999999999999999999999997776665544433322 25789999999999986
No 341
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.16 E-value=4.1e-11 Score=74.66 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||+|||||+++|+|+..++.|.+
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 44556789999999999999999999999999888854
No 342
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.16 E-value=5.4e-10 Score=74.76 Aligned_cols=63 Identities=37% Similarity=0.503 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...+|+|+|.+|+|||||+|.|+|...+..+... ..+......... .....+.++||||+.+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRT-RAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEE-ECCeEEEEEECCCCCch
Confidence 3478999999999999999999998764332111 111111112222 25678899999999975
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.15 E-value=4.4e-11 Score=92.88 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=52.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
...+|+.++|+|+||||||||+|+|+|+.. +..|.+...+.... .. .++..+|+.|.+.+.+. .+++
T Consensus 785 ~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~-~~~~i~yv~Q~~~~~~~-----~Tv~ 854 (1394)
T TIGR00956 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SS-FQRSIGYVQQQDLHLPT-----STVR 854 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hh-hhcceeeecccccCCCC-----CCHH
Confidence 445789999999999999999999999986 44454333222111 11 24568899998877665 6777
Q ss_pred HHHHHhh
Q 038901 92 EIVKCLG 98 (107)
Q Consensus 92 ~~~~~~~ 98 (107)
|++.+..
T Consensus 855 E~L~~~a 861 (1394)
T TIGR00956 855 ESLRFSA 861 (1394)
T ss_pred HHHHHHH
Confidence 7777644
No 344
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1.2e-11 Score=87.51 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS 52 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~ 52 (107)
.....+|++++|+|+||||||||+++|+|+..+++|.+..
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 307 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL 307 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence 4456678999999999999999999999999988885443
No 345
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.14 E-value=1.1e-11 Score=92.67 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
..+......++++++++.|+|||||||++++|+|...+++|.....+.............+.++|.+|...+.+.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~----- 654 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEE----- 654 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhh-----
Confidence 455666777889999999999999999999999999999986444333322211111124678899999888877
Q ss_pred HHHHHHHHHhhccCC
Q 038901 88 FVGKEIVKCLGMAKD 102 (107)
Q Consensus 88 ~~~~~~~~~~~~~~~ 102 (107)
+|.+|.+.++.+...
T Consensus 655 lT~rEhL~~~arlrG 669 (885)
T KOG0059|consen 655 LTGREHLEFYARLRG 669 (885)
T ss_pred ccHHHHHHHHHHHcC
Confidence 999999988877654
No 346
>PRK12289 GTPase RsgA; Reviewed
Probab=99.14 E-value=2.2e-10 Score=78.13 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.+++|+|++|+|||||||.|++......+.+ ..+.++......... ..-++++||||+.....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNGGLLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCCcEEEeCCCcccccc
Confidence 5799999999999999999998766544422 223333333333332 22359999999987644
No 347
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.13 E-value=5.6e-11 Score=76.45 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 79 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 34556789999999999999999999999998888753
No 348
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=8.6e-12 Score=95.56 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..-.++++|||||++|||||||+++|.++..+.+|.+..++..........+ +.+...++|+|.+++.+
T Consensus 1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL-RsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL-RSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH-HhcCeeeCCCCceecCc
Confidence 3456789999999999999999999999999998977666666555554444 67899999999888654
No 349
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=9.6e-11 Score=84.83 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=57.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
...++|+..||+||+|||||||+|+|+|..... .|.+..++. .......+...+||.|+..+.+. .|+
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~----~~~~~~~~~~s~yV~QdD~l~~~-----LTV 121 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR----PRDSRSFRKISGYVQQDDVLLPT-----LTV 121 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc----cCchhhhhheeEEEccccccccc-----ccH
Confidence 345678999999999999999999999988642 232222221 11112235678999999999988 999
Q ss_pred HHHHHHhhccC
Q 038901 91 KEIVKCLGMAK 101 (107)
Q Consensus 91 ~~~~~~~~~~~ 101 (107)
+|.+.+.+.+.
T Consensus 122 ~EtL~f~A~lr 132 (613)
T KOG0061|consen 122 RETLRFSALLR 132 (613)
T ss_pred HHHHHHHHHhc
Confidence 99998877653
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.12 E-value=1.3e-10 Score=75.84 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
+..++++|+||+|||||+|.|++......|.+. .+..++........ ..++++||||+....
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~~~liDtPG~~~~~ 185 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HGGLIADTPGFNEFG 185 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CCcEEEeCCCccccC
Confidence 368999999999999999999987665544221 22222222222222 346999999998654
No 351
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.12 E-value=3.1e-11 Score=85.87 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAG 50 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~ 50 (107)
......+|++++|+|+||||||||+++|+|+. .++.|.+
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i 59 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE
Confidence 34455678999999999999999999999996 5777743
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.12 E-value=5e-11 Score=92.58 Aligned_cols=78 Identities=22% Similarity=0.132 Sum_probs=52.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRR----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
...++|+.++|+||||||||||+|+|+|.. .+..|.+...+....... ...+...+++.|.+.+++. .+
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~~-----lT 154 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFPH-----LT 154 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCCC-----CC
Confidence 344678999999999999999999999986 235554333222111101 1123458899998877776 67
Q ss_pred HHHHHHHhh
Q 038901 90 GKEIVKCLG 98 (107)
Q Consensus 90 ~~~~~~~~~ 98 (107)
++|++.+..
T Consensus 155 V~E~l~f~~ 163 (1394)
T TIGR00956 155 VGETLDFAA 163 (1394)
T ss_pred HHHHHHHHH
Confidence 777777654
No 353
>PRK12288 GTPase RsgA; Reviewed
Probab=99.11 E-value=2.1e-10 Score=78.16 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.+++|+|++|+|||||||+|++......|.+. .+..+........+ ..-++++||||+-....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHGGDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCCCEEEECCCCCcccC
Confidence 56899999999999999999998776655332 22222222222222 22357999999976644
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.11 E-value=2.1e-10 Score=89.77 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=47.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|++|||||||+++|+|...+..|.. .. .++.+.|+.|+|.+++.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i------------~~-~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS------------VV-IRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE------------EE-ecCcEEEEcCccccccc
Confidence 34556889999999999999999999999999877631 12 25789999999999875
No 355
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.09 E-value=2.2e-11 Score=86.06 Aligned_cols=68 Identities=16% Similarity=0.001 Sum_probs=42.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
......+|++++|+|+||||||||+++|+|+.++ ..|.+................+..+++++|.+.+
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 347 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHL 347 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHh
Confidence 3445567899999999999999999999998764 4664332221110000000013457788877654
No 356
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.09 E-value=9.1e-10 Score=66.20 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=40.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
|..++++|++|+|||||++.|++......+. ..+.+.........+ ......++|+||+.+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRET 62 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCC
Confidence 4679999999999999999999875432221 111222221222232 4557789999998765
No 357
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=9.4e-11 Score=85.28 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.......+|++++|+|+||||||||+++|+|...++.|.+
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I 58 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3344556789999999999999999999999999888853
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.09 E-value=1.1e-10 Score=84.34 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
...+|++++|+|+||+|||||+++|+|+..++.|.+.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 4678899999999999999999999999999988653
No 359
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=3.1e-11 Score=91.33 Aligned_cols=80 Identities=19% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
........|+.+|||||+||||||.+..|-+.+.|+.|.+..++....... ..+.+++++.|-|.|.+++. |.
T Consensus 1008 ~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~LR~~i~lVsQEP~LF~~------TI 1080 (1228)
T KOG0055|consen 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWLRKQIGLVSQEPVLFNG------TI 1080 (1228)
T ss_pred CCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHHHHhcceeccCchhhcc------cH
Confidence 344556678999999999999999999999999999996655444433333 23346889999999999975 55
Q ss_pred HHHHHHh
Q 038901 91 KEIVKCL 97 (107)
Q Consensus 91 ~~~~~~~ 97 (107)
+|++.+-
T Consensus 1081 rENI~YG 1087 (1228)
T KOG0055|consen 1081 RENIAYG 1087 (1228)
T ss_pred HHHHhcc
Confidence 5555443
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.08 E-value=2.2e-10 Score=89.62 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=44.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+.++|+||||||||||+++|+|+..+..|.+.. ...++|+.|.|.+++.
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~--------------~g~iayv~Q~~~l~~~ 501 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH--------------SGRISFSPQTSWIMPG 501 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE--------------CCEEEEEeCCCccCCc
Confidence 345678999999999999999999999999988874221 2357899999888753
No 361
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.07 E-value=7e-10 Score=73.21 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=39.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.++|+|++|+|||||+|+|++....... ....++................++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs--~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS--PKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC--CCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 5899999999999999999997543221 12222222222222223456789999999754
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.07 E-value=1.6e-10 Score=90.15 Aligned_cols=75 Identities=12% Similarity=-0.026 Sum_probs=50.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
...+|+.++|+|+||||||||+++|+|.... ..|.+...+... .... .++..+|+.|.+.+++. .+++|
T Consensus 902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~---~~~~-~~~~igyv~Q~d~~~~~-----lTV~E 972 (1470)
T PLN03140 902 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK---KQET-FARISGYCEQNDIHSPQ-----VTVRE 972 (1470)
T ss_pred EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC---ChHH-hhhheEEEccccccCCC-----CcHHH
Confidence 4457899999999999999999999998642 234222211110 0011 13567899999887766 67778
Q ss_pred HHHHhh
Q 038901 93 IVKCLG 98 (107)
Q Consensus 93 ~~~~~~ 98 (107)
++.+..
T Consensus 973 ~L~~~a 978 (1470)
T PLN03140 973 SLIYSA 978 (1470)
T ss_pred HHHHHH
Confidence 776643
No 363
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=1.5e-09 Score=75.01 Aligned_cols=60 Identities=25% Similarity=0.238 Sum_probs=40.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.|+|||.++||||||||+|++.....+. ....|.........+.....+.++|+||+...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~--~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVAD--YPFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccC--CCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 6999999999999999999986542211 12233333333334323356899999999754
No 364
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.07 E-value=8.3e-10 Score=76.46 Aligned_cols=61 Identities=34% Similarity=0.354 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..|+|+|++++|||||+|.|+|...+... ...+.|.+..+...+| ....+.++||+|+.+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~ 64 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG 64 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC
Confidence 57999999999999999999998876654 3446677777777777 4556999999999865
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.06 E-value=1.4e-10 Score=84.36 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
......+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I 60 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 344556789999999999999999999999999888854
No 366
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.06 E-value=8.3e-10 Score=69.72 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee-eEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|+|++|+|||||+|+|+|...+..+....+.. .................++|+||+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 468999999999999999999977655443222211 000001111111235789999998754
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.06 E-value=1.9e-10 Score=84.61 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I 566 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence 34556789999999999999999999999999888743
No 368
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.06 E-value=3.2e-10 Score=80.54 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI 81 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE
Confidence 44556789999999999999999999999999888854
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.05 E-value=1e-10 Score=72.81 Aligned_cols=35 Identities=26% Similarity=0.106 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...........+|++++|+||||||||||+++|++
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34455566677889999999999999999999963
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.05 E-value=2.1e-10 Score=90.20 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+.++|+|++|||||||+++|+|...+.. |.+. .++.++|+.|+|.+++.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~--------------l~~~Iayv~Q~p~Lfng 693 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV--------------IRGTVAYVPQVSWIFNA 693 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE--------------EcCeEEEEcCccccCCC
Confidence 44556889999999999999999999999998887 5321 25678999999999875
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.05 E-value=1.6e-10 Score=82.24 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT 56 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~ 56 (107)
......+|.+|+|+||||+||||||+.|+|...+.+|.+..+.+.
T Consensus 341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v 385 (530)
T COG0488 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETV 385 (530)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCce
Confidence 444556789999999999999999999999988887754444433
No 372
>PRK00089 era GTPase Era; Reviewed
Probab=99.04 E-value=2.2e-09 Score=71.42 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
-.++|+|++|+|||||+|.|+|....... ....++................++||||+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence 56899999999999999999987543221 11222222111111113457899999999765
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.3e-10 Score=83.34 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=33.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 369 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 34556789999999999999999999999999888853
No 374
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.03 E-value=3.4e-10 Score=88.73 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+.++|+|+||||||||+++|+|+..+..|.+. . ...++|+.|.|.+++.
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-------------~-~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-------------M-KGSVAYVPQQAWIQND 713 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-------------E-CCEEEEEcCCccccCC
Confidence 44567899999999999999999999999998877421 1 2457888898887653
No 375
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.02 E-value=2.3e-09 Score=65.54 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.|+|+|++|+|||||+|+|.+.... .+.. ...+.........+.......++|+||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADY-PFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCC-CccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 4899999999999999999986532 1110 111222222222222223778999999854
No 376
>PTZ00243 ABC transporter; Provisional
Probab=99.02 E-value=8.4e-10 Score=86.67 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|+.++|+|+||||||||+++|+|...+..|.+. . ...++|++|.|.++.
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~-------------~-~~~i~yv~Q~~~l~~ 734 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-------------A-ERSIAYVPQQAWIMN 734 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-------------E-CCeEEEEeCCCccCC
Confidence 34467899999999999999999999999988877421 1 356889999998865
No 377
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.02 E-value=5e-09 Score=67.90 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=39.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+++|+|++|+|||||+|.|++....... ....+.........+ ......++|+||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECCCcccc
Confidence 5899999999999999999997643221 112222222233333 4567788999998654
No 378
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.01 E-value=1.8e-10 Score=66.13 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
....+++.++|+|+||||||||+++++
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 344567999999999999999999987
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.01 E-value=6.7e-10 Score=69.63 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
..+..++|+|+||||||||+++|+++..+..+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~ 54 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDER 54 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 35689999999999999999999999887665
No 380
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-10 Score=75.80 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=39.6
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS 51 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~ 51 (107)
+.+.........+|++++|||.||||||||-++|+++..+++|.+.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~ 71 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence 3455566777788999999999999999999999999999998544
No 381
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=4.9e-09 Score=71.23 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=41.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..|+|||.++||||||||+|++.....+. ....|.........+.....+.++|+||+...
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~--ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCC--CCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 36999999999999999999985433221 12234444444444434457899999999754
No 382
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=1.1e-09 Score=68.77 Aligned_cols=58 Identities=29% Similarity=0.288 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc------cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA------SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
+..++++|.+|+|||||+|+|++...... ......+++... ..... ....+++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~-~~~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL-IKIPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee-EEEec--CCCCEEEeCcCC
Confidence 36799999999999999999998653221 111222222221 12222 225799999996
No 383
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.00 E-value=2.1e-09 Score=65.51 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
....++++|.+|+|||||+|+|++......+. ..+.+..... .. .....+++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~--~~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQE--VK--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEE--EE--ecCCEEEEECCCC
Confidence 45889999999999999999999876543321 1222222221 22 2346899999996
No 384
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.99 E-value=6.2e-11 Score=73.85 Aligned_cols=80 Identities=14% Similarity=-0.008 Sum_probs=54.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee------------eEEeeCCcEEEEEeC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK------------TTVLKDGQVVNVIDT 76 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~v~d~ 76 (107)
..........|.+|.|||-+||||||+++||.-+..|..|.+........... .....+.+.++++|.
T Consensus 22 LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~ 101 (256)
T COG4598 22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH 101 (256)
T ss_pred hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence 34456677789999999999999999999999999999886544333211111 001112356788888
Q ss_pred CCCCCCCCCchHHHHHH
Q 038901 77 PGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 77 p~~~~~~~~~~~~~~~~ 93 (107)
..++.+ +++.++
T Consensus 102 FNLWsH-----mtvLeN 113 (256)
T COG4598 102 FNLWSH-----MTVLEN 113 (256)
T ss_pred cchhHH-----HHHHHH
Confidence 888776 665555
No 385
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.6e-10 Score=74.60 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
...+|+.-+|+|+||||||||++.+++...+.+|.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~ 87 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc
Confidence 45677999999999999999999999999998764
No 386
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.99 E-value=4.3e-09 Score=63.51 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+++++|++|+|||||+|.|++......... ...+....... .........++|+||+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGI-YTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEE-EEcCCeEEEEEECCCCCcc
Confidence 6799999999999999999998754322211 11111111111 1113456788999998765
No 387
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.99 E-value=3.1e-10 Score=71.80 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
....++ +++|+||||||||||+++|+++..+.
T Consensus 18 l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~ 49 (197)
T cd03278 18 IPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ 49 (197)
T ss_pred eecCCC-cEEEECCCCCCHHHHHHHHHHHhccc
Confidence 344566 89999999999999999999887544
No 388
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.98 E-value=1.1e-10 Score=71.75 Aligned_cols=80 Identities=20% Similarity=0.062 Sum_probs=53.9
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce-e----eEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV-T----TTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~-~----~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..+....-+.|+.++++||+|+|||||++.|.-+..+.+|...... . .......+...++..++++|.-.+++.
T Consensus 18 lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph- 96 (242)
T COG4161 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH- 96 (242)
T ss_pred eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch-
Confidence 3445566778899999999999999999999988888887422111 0 001111111125678999999888877
Q ss_pred CCchHHHHHH
Q 038901 84 AGSEFVGKEI 93 (107)
Q Consensus 84 ~~~~~~~~~~ 93 (107)
+++.++
T Consensus 97 ----ltv~en 102 (242)
T COG4161 97 ----LTVQEN 102 (242)
T ss_pred ----hHHHHH
Confidence 555544
No 389
>PTZ00258 GTP-binding protein; Provisional
Probab=98.98 E-value=6.2e-09 Score=71.81 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC----------------CcEEEEEeCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~v~d~p~~~ 80 (107)
..+..++|||.+++|||||+|+|++.....+. ..+.|.......+.+.. ...+.++|+||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n--~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN--FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccC--CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 45578999999999999999999887643322 12233233333332211 1236888999998
Q ss_pred CCCCCchHHHHHHHHHhh
Q 038901 81 DLSAGSEFVGKEIVKCLG 98 (107)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (107)
......+....+++..+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir 114 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIR 114 (390)
T ss_pred cCCcchhHHHHHHHHHHH
Confidence 654333334445555444
No 390
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.97 E-value=1e-08 Score=68.31 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=43.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
....++++|.+++|||||+|+|.+......+. ..+.|...+ ... .....+++||||+......+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQ--WIK--LGKGLELLDTPGILWPKLED 183 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEE--EEE--eCCcEEEEECCCcCCCCCCc
Confidence 44689999999999999999999976644442 223333322 122 23457899999998765433
No 391
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.97 E-value=5.3e-09 Score=69.22 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=45.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC----------------cEEEEEeCCCCCCCCCC
Q 038901 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~v~d~p~~~~~~~~ 85 (107)
++|+|.+++|||||+|+|++.....+. ..+.|.........+... ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n--~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc--ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999997763322 122222222222222111 14789999999865444
Q ss_pred chHHHHHHHHHhh
Q 038901 86 SEFVGKEIVKCLG 98 (107)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (107)
.+....+++..++
T Consensus 79 ~~glg~~fL~~i~ 91 (274)
T cd01900 79 GEGLGNKFLSHIR 91 (274)
T ss_pred hhHHHHHHHHHHH
Confidence 3444455555544
No 392
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=3.7e-09 Score=63.45 Aligned_cols=56 Identities=30% Similarity=0.474 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.++++|.+|+|||||+|+|++....... ...+.+... ..... ....+++||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHF--QTIFL--TPTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccce--EEEEe--CCCEEEEECCCcCC
Confidence 7999999999999999999987654322 112222211 22222 23579999999864
No 393
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.97 E-value=2.1e-09 Score=65.92 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=35.4
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
|+|++|+|||||+|+|++..... + .....+.........+ . .....++|+||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~-~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-A-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc-c-CCCceeecCcceEEEc-CCCCeEEEEeccccch
Confidence 58999999999999999875411 1 1112222222222333 3 56789999999864
No 394
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.97 E-value=2.5e-10 Score=76.13 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=49.2
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeee---EEeeCCcEEEEEeCC
Q 038901 6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTP 77 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p 77 (107)
+.......+...+|++++|||.|||||||+.++|+++.+. .+|.+...+........ ..+....+++++|.|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 3455566677788999999999999999999999999873 22322222221111111 123356899999998
Q ss_pred CC
Q 038901 78 GL 79 (107)
Q Consensus 78 ~~ 79 (107)
..
T Consensus 98 ~~ 99 (316)
T COG0444 98 MT 99 (316)
T ss_pred hh
Confidence 43
No 395
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=4e-09 Score=65.50 Aligned_cols=55 Identities=35% Similarity=0.479 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
..++++|.+++|||||+|+|++......+. ..+.|...+ .... ....+++|+||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~--~~~~--~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQ--EVHL--DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceE--EEEe--CCCEEEEECcCC
Confidence 589999999999999999999977655442 223333222 1222 345789999996
No 396
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.94 E-value=3.8e-09 Score=66.74 Aligned_cols=60 Identities=30% Similarity=0.344 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|+|++|||||||+|.|++........ ...+.........+.......++|+||+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCcccc
Confidence 689999999999999999999875322221 112222222223332333788999999854
No 397
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.94 E-value=8.1e-09 Score=71.82 Aligned_cols=69 Identities=29% Similarity=0.349 Sum_probs=50.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~~~~~~ 87 (107)
...|..++|+|++++|||||+|+|++...+..- ...+|+.... ..... ....+.++||.|+-+.....+
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT--dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE 283 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVT--DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVE 283 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEec--CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHH
Confidence 346789999999999999999999999887653 2334443333 33443 788999999999986644333
No 398
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.93 E-value=1.2e-08 Score=69.72 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC----------------cEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~v~d~p~~~~~~ 83 (107)
..++|||.+++|||||+|+|++.....+. ..+.|.........+... ....++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n--ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc--cccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 57999999999999999999997632221 112222222222221111 247899999998654
Q ss_pred CCchHHHHHHHHHhh
Q 038901 84 AGSEFVGKEIVKCLG 98 (107)
Q Consensus 84 ~~~~~~~~~~~~~~~ 98 (107)
...+....+.+..+.
T Consensus 81 ~~g~glg~~fL~~i~ 95 (364)
T PRK09601 81 SKGEGLGNQFLANIR 95 (364)
T ss_pred ChHHHHHHHHHHHHH
Confidence 443344455555544
No 399
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.92 E-value=3.4e-09 Score=72.62 Aligned_cols=61 Identities=25% Similarity=0.241 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+..++++|.+|+|||||+|+|++...... ......+++... ..... ....+++||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~-~~~~~--~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL-IEIPL--DDGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE-EEEEe--CCCCEEEECCCCCCh
Confidence 46899999999999999999998643211 112223333221 12222 234589999999865
No 400
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.91 E-value=3.1e-08 Score=65.75 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCC------CCceeeEeeeeeEEee-CC--cEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~------~~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~~ 83 (107)
..++++|++|+|||||+|.|++......... ....+........... .. ....++||||+.+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 5799999999999999999988765433210 0122221111111111 22 368999999998653
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=1.5e-09 Score=82.80 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~ 96 (107)
.+|...||+|.||||||||||+|++.. +.|.+..+...........-.++..+|+-|++-..+. .|++|.+.+
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~-----~TVrESL~f 887 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRK--TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE-----LTVRESLRF 887 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCc--ccceEEeEEEECCeeCchhhhccccceeecccccCcc-----cchHHHHHH
Confidence 467899999999999999999999975 3443332222222112212235789999999887766 889998887
Q ss_pred hhcc
Q 038901 97 LGMA 100 (107)
Q Consensus 97 ~~~~ 100 (107)
.+..
T Consensus 888 SA~L 891 (1391)
T KOG0065|consen 888 SAAL 891 (1391)
T ss_pred HHHH
Confidence 6654
No 402
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.91 E-value=2e-08 Score=70.13 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=41.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.|+|+|.+++|||||||+|++..+..+. ....|.........+.....+.++|+||+...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~--ypfTTl~PnlG~v~~~~~~~~~laD~PGlieg 219 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIAN--YHFTTLVPNLGVVETDDGRSFVMADIPGLIEG 219 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcccc--CCcceeceEEEEEEEeCCceEEEEECCCCccc
Confidence 7999999999999999999986543221 12233344444444433567899999999753
No 403
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.90 E-value=5.1e-09 Score=63.38 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=36.1
Q ss_pred EEEEcCCCCCHHHHHHHHh--CCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 22 VVLLGRTGNGKSATGNSIL--GRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~--g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
|+|+|++|+|||||+|.|+ +.....++... .+... .... ......++|+||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~--~t~~~--~~~~--~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPG--KTQLI--NFFN--VNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCC--cceeE--EEEE--ccCeEEEecCCCcccc
Confidence 7899999999999999999 55544444221 22211 1111 2347889999997653
No 404
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.90 E-value=1.5e-08 Score=71.79 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..|+|||.++||||||||.|++.....+. ....|.........+ ....+.++|+||+...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIad--ypfTTl~P~lGvv~~-~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIAD--YPFTTLVPNLGVVQA-GDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccc--cCcccccceEEEEEE-CCeEEEEEECCCCccc
Confidence 57999999999999999999986543221 122333333333443 4567899999999754
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.89 E-value=4.3e-09 Score=75.60 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+.....++|+.+.|.|+||||||||+++|+|+-+.-.|.+.. . ......|++|.|.+...
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~-----------P-~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM-----------P-ADSALLFLPQRPYLPQG 470 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceec-----------C-CCCceEEecCCCCCCCc
Confidence 334556688999999999999999999999998866653221 1 13557899999988764
No 406
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.89 E-value=1.3e-08 Score=61.25 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=37.3
Q ss_pred EEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 23 ~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+|+|.+|+|||||+|.|++....... .....+.........+ ......++|+||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCc
Confidence 58999999999999999986432221 1112222222223333 4567889999999765
No 407
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.89 E-value=9.3e-10 Score=78.05 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc----ccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCC
Q 038901 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK----ASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~----~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~ 79 (107)
..........+|++++|+|.|||||||+.++|.|+.++. +|.+...+....... ........+.+++|.|.-
T Consensus 24 ~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 445566677889999999999999999999999999877 343322222111111 112234789999999843
No 408
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=2.9e-08 Score=65.83 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
...++++|.+|+|||||+|.|.+......+. ..+.|...+ .... ....+++||||+....
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQ--WIKL--SDGLELLDTPGILWPK 177 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceE--EEEe--CCCEEEEECCCcccCC
Confidence 4679999999999999999999876544442 222333222 1222 2356999999996543
No 409
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.87 E-value=2.1e-08 Score=67.99 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..|+|||.+++|||||+|.|++.....+. ....|.........+.....+.++|+||+...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~--y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 46999999999999999999986432211 11223333333334322367899999999754
No 410
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.87 E-value=6.1e-09 Score=68.34 Aligned_cols=77 Identities=26% Similarity=0.243 Sum_probs=44.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc-eeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG-VTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
..+.-++.|+|.+|+|||||+|+|.+-...... ..+ ++....+.... ...+...+.|+||+.+....+..-...++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~-~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLS-YDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhh-ccccceEEecCCCcccchhhhHHHHHHHH
Confidence 344467889999999999999999942221111 011 11111111112 24578899999999986544433333333
Q ss_pred H
Q 038901 95 K 95 (107)
Q Consensus 95 ~ 95 (107)
+
T Consensus 113 d 113 (296)
T COG3596 113 D 113 (296)
T ss_pred H
Confidence 3
No 411
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.4e-09 Score=66.56 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
......+|++.+|+|.+|||||||++||.+...++.|.+
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v 63 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence 345566889999999999999999999999999998853
No 412
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.87 E-value=2.6e-08 Score=59.39 Aligned_cols=60 Identities=35% Similarity=0.370 Sum_probs=38.1
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
|+|+.|+|||||+|.|++......+. ....+.................++|+||+.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999999876543221 1122222222222222256789999999987643
No 413
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.86 E-value=2.9e-08 Score=64.01 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCceeeEeeeeeEEee--CCcEEEEEeCCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSGVTTTCEMKTTVLK--DGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~-~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~d~p~~~~~~~ 84 (107)
-.+|+|+|+.++|||||+|.|++.. .+..+......|........... ....++++||||+.+...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 3689999999999999999999972 33333222233332222222211 246789999999987643
No 414
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.85 E-value=8e-09 Score=65.53 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.++|+|++|+|||||+++|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999873
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=98.85 E-value=1.4e-09 Score=74.55 Aligned_cols=62 Identities=26% Similarity=0.208 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+..++++|.+|+|||||||+|++...... ......+++... ..... ..-.+++||||+...
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~-~~~~l--~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK-IEIPL--DDGSFLYDTPGIIHR 223 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee-EEEEc--CCCcEEEECCCcccc
Confidence 346799999999999999999986431110 012223333221 12222 233589999999754
No 416
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.85 E-value=2.2e-08 Score=69.76 Aligned_cols=59 Identities=31% Similarity=0.418 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+++|+|++|+|||||+|.|++....... ...+.+.........+ ....+.++||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCC
Confidence 3799999999999999999987643222 1123333333344444 566789999999854
No 417
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.85 E-value=1.9e-08 Score=60.89 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc-CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+++++|.+|+|||||+|.|++....... ......+.........+.......++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 6899999999999999999975321110 00112222222222333225578899999974
No 418
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.84 E-value=4.8e-09 Score=74.33 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
....++|..+.|+||||||||||+++|.|+-+...|... .....+++|++|-|.+-
T Consensus 502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~------------~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS------------IPRPNNIFYIPQRPYMS 557 (728)
T ss_pred eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee------------cCCCcceEeccCCCccC
Confidence 345567899999999999999999999998775444211 11235578888888654
No 419
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.84 E-value=4.1e-08 Score=72.95 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
.+++|+|.+|||||||+|.|+|.....+. ..+.|.........+ ......++|+||.++..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLT 64 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECCCccccc
Confidence 57999999999999999999997653322 233444333333333 45678999999998764
No 420
>PRK15494 era GTPase Era; Provisional
Probab=98.84 E-value=3.1e-08 Score=67.47 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.++|+|.+|+|||||+|.|++....... .....|.........+ ......++||||+..
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFE 112 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCC
Confidence 8999999999999999999986543211 1111221111122232 455678999999964
No 421
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.84 E-value=2.2e-10 Score=80.60 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....+|+.++|+||+|+||||+++.|.+.....+|.+..++........... +..++.|+|+..++++
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL-Rs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL-RSSIGVVPQDTVLFND 626 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH-HHhcCcccCcceeecc
Confidence 34456789999999999999999999999998888866555554443333232 4567777777666643
No 422
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.84 E-value=1.3e-08 Score=62.01 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCC--CCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+++|+|++|+|||||++.|++......+.. ....+.........+ ......++|+||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh
Confidence 378999999999999999987654322211 111222222222333 456788999998754
No 423
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.83 E-value=1.3e-08 Score=62.51 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+...++|+|++|+|||||++.|.+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC
Confidence 345789999999999999999999864
No 424
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.83 E-value=3.1e-08 Score=69.60 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.++..++|+|++|+|||||+|.|++...+.... ..+.+.........+ ....+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFEL-NGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEE-CCEEEEEeeCCCcccc
Confidence 355789999999999999999999875433221 122233322333343 5567789999999654
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=98.83 E-value=3.2e-09 Score=72.65 Aligned_cols=63 Identities=40% Similarity=0.506 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
++++++|+|+||+|||||+|.|++...+..|.+.. +............ . ...+++||||+...
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l-~-~~~~l~DtpG~~~~ 260 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL-P-SGGLLIDTPGMREL 260 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe-c-CCCeecCCCchhhh
Confidence 46899999999999999999999998887774321 1111111111111 1 23478899999543
No 426
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.83 E-value=4.1e-08 Score=65.28 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccC-C-----CCceeeEeeeeeEEee-C--CcEEEEEeCCCCCCCCCCchHHH
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA-G-----SSGVTTTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~-~-----~~~~~~~~~~~~~~~~-~--~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
..++++|.+|+|||||+|.|++........ . ....+........... . .....++||||+.+. ......+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~-i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN-IDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS-STHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc-ccchhhh
Confidence 579999999999999999999875543320 0 0011111111111111 1 236789999999764 2333445
Q ss_pred HHHHHHhh
Q 038901 91 KEIVKCLG 98 (107)
Q Consensus 91 ~~~~~~~~ 98 (107)
..+..++.
T Consensus 84 ~~I~~yI~ 91 (281)
T PF00735_consen 84 EPIVDYIE 91 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.83 E-value=5.2e-09 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+..+.|.|+||+|||||+.+|.-...
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45899999999999999999875543
No 428
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.82 E-value=3.3e-08 Score=61.10 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
.+..++++|.+|+|||||+|.|++......+ ...+.+..... ... .....++||||++
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~--~~~--~~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQW--IKI--SPGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEE--EEe--cCCEEEEECCCCC
Confidence 3468999999999999999999986543322 11223322222 222 2457899999974
No 429
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.82 E-value=3.5e-08 Score=61.73 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....++|+|.+|+|||||+|.|++.. ..... ..+.+...... . ......++|+||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~t~~~~~~--~--~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSK--TPGRTQLINFF--E--VNDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC--CCCceeEEEEE--e--cCCeEEEeCCCCCCC
Confidence 34679999999999999999999853 22111 11222221111 1 235678999999764
No 430
>PLN03073 ABC transporter F family; Provisional
Probab=98.81 E-value=4.4e-09 Score=77.51 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=26.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
......|++++|||+||||||||+++|+|..
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3445568999999999999999999999864
No 431
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.81 E-value=3.9e-08 Score=61.06 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....++|+|++|+|||||+|.|++.. ..... ...+.+...... .. .....++|+||+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTS-KTPGRTQLINFF--EV--NDGFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCccccc-CCCCcceEEEEE--Ee--CCcEEEEeCCCCcc
Confidence 445789999999999999999999864 11111 111222222211 11 23578999999864
No 432
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.81 E-value=3.5e-08 Score=62.14 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=42.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
|.....-|+++|+|++|||||||+|++... +..+ ...+.|....... + ....+++|-||+.-..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~--~--~~~~~lVDlPGYGyAk 84 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFE--V--DDELRLVDLPGYGYAK 84 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEE--e--cCcEEEEeCCCccccc
Confidence 334456699999999999999999999653 2222 2233444333332 2 2337899999997654
No 433
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=3e-08 Score=60.54 Aligned_cols=58 Identities=29% Similarity=0.244 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+++|+|.+|+|||||+|.|++........ ...+.........+ ......++||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPY--PFTTKSLFVGHFDY-KYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCC--CCcccceeEEEEcc-CceEEEEEECCCcCC
Confidence 68999999999999999999865432211 11122222222222 346789999999853
No 434
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=67.69 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhh
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~ 98 (107)
-..++|||-++||||||+|+|....+.... ....|..++.....+.......|.|-||+.......+-...++++.+.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~--YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAH--YAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccc--cceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 356899999999999999999987664332 223444444455555445568999999998776666666677777776
Q ss_pred cc
Q 038901 99 MA 100 (107)
Q Consensus 99 ~~ 100 (107)
++
T Consensus 274 R~ 275 (366)
T KOG1489|consen 274 RC 275 (366)
T ss_pred hh
Confidence 54
No 435
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.79 E-value=4.4e-08 Score=59.58 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+++++|..|+|||||+|.|++......+. ....+.......... ......++|+||+...
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRK 63 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccc
Confidence 569999999999999999999865322211 111111111122222 3455789999998654
No 436
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.79 E-value=5.7e-08 Score=70.28 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
..++++|.+++|||||+|.|+|.....+. ..+.|.......... +.+...++|.||.++...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCC
Confidence 45999999999999999999998876543 345566555555554 566789999999997643
No 437
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.78 E-value=1.1e-08 Score=63.77 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.......|+++-+|||||||||||+-.++|+.+..+.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGs 54 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGS 54 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCce
Confidence 3456668899999999999999999999999987543
No 438
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.78 E-value=9.3e-09 Score=70.49 Aligned_cols=63 Identities=27% Similarity=0.284 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee-eEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..||++|.+|+|||||||+|.|+-..+.|....+.. +.........+....+.++|-||+...
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCC
Confidence 679999999999999999999876655543332221 111111222234456889999998644
No 439
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.77 E-value=3.8e-08 Score=67.32 Aligned_cols=60 Identities=32% Similarity=0.331 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
...++|+|.+++|||||+|.|++....... ..+.|.........+.....+.++||||+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 378999999999999999999986532111 112222222233343345678999999984
No 440
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.77 E-value=4.9e-08 Score=58.50 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=32.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
++|+|++|+|||||+|.|++........ .+.......... ......+.|+||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 7899999999999999999874322111 111111111121 33556788888754
No 441
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.76 E-value=2.4e-08 Score=60.21 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=36.4
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
|+|.+|+|||||+|.+++..... +. ..+.+.........+ ......++||||+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEee-CCeEEEEEECCCcccc
Confidence 58999999999999999875322 21 112222222233344 3457889999998754
No 442
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.76 E-value=6.3e-08 Score=65.54 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~ 86 (107)
...++++|-+++|||||||.|++......+. ..+.|...+ ...-....+++||||+.......
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q----~i~~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQ----WIKLDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceE----EEEcCCCeEEecCCCcCCCCccc
Confidence 3679999999999999999999988766552 223332222 12234557999999998775444
No 443
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.75 E-value=1.2e-07 Score=56.46 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
.+++++|..|+|||||++.|++...+.... ...+.......... .. ....++|+||....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYK--PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCC--CCceeeeeEEEEEE-CCEEEEEEEEECCCcccc
Confidence 468999999999999999999877332221 11222222121222 33 45788999996443
No 444
>PRK04213 GTP-binding protein; Provisional
Probab=98.74 E-value=1.9e-07 Score=58.85 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....++|+|++|+|||||+|.|++.... .+ ...+.+... ....+ . ...++|+||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~--~~~~~--~-~~~l~Dt~G~~~ 64 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKP--NHYDW--G-DFILTDLPGFGF 64 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCc--eEEee--c-ceEEEeCCcccc
Confidence 3467999999999999999999986532 22 111222211 12222 2 578999999743
No 445
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.74 E-value=6e-08 Score=67.81 Aligned_cols=60 Identities=28% Similarity=0.334 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+|+|+|.+|+|||||+|.|++........ ..+.+.........+ ......++||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCC
Confidence 469999999999999999999876432221 122333333333444 457789999999976
No 446
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.74 E-value=8e-09 Score=71.14 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=38.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE 59 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~ 59 (107)
.-++|+.+-|+|.||||||||+..|+|+..|.+|.+..+++....
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 345789999999999999999999999999999977666655433
No 447
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.73 E-value=8.7e-09 Score=65.93 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 038901 20 RTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~ 40 (107)
.+++|+||||||||||+++|+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999997
No 448
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.73 E-value=6.7e-08 Score=68.03 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+..++|+|.+|+|||||+|.|++........ ..+.+.........+ ....+.++||||+.+.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~ 276 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTAGIRET 276 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCCCCCCC
Confidence 45789999999999999999999865432221 112222222223333 4567899999998653
No 449
>PRK11058 GTPase HflX; Provisional
Probab=98.73 E-value=3.9e-08 Score=68.77 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|+|.+++|||||+|.|++....... ..+.|.........+.......++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 47999999999999999999986543221 1122322222333443334678999999954
No 450
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.73 E-value=1.2e-08 Score=63.91 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
|..++|+||||||||||++.|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 478999999999999999999887643
No 451
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.73 E-value=5.5e-09 Score=67.78 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+.+++|+||||||||||+++|++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999843
No 452
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.72 E-value=7.9e-09 Score=73.11 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=34.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT 55 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~ 55 (107)
......++++|||||+|||||++.+++...+..|.+.....
T Consensus 412 gid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 412 GIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred ccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 34455889999999999999999999999999996554443
No 453
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.71 E-value=2e-07 Score=65.22 Aligned_cols=63 Identities=29% Similarity=0.350 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCC
Confidence 45789999999999999999999876443321 122232222222333 5567789999998654
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.71 E-value=9.6e-09 Score=65.35 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.+++.+++|+|+||||||||+++|+++...
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356799999999999999999999987653
No 455
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.71 E-value=1.1e-08 Score=65.40 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
++.+++|+|+||||||||+++|++.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee
Confidence 3679999999999999999999853
No 456
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=1.1e-08 Score=79.01 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=46.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....++|+.++++|+.|||||||+.+|+|.....+|. ... .....|+.|.|-+++.
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~-------------v~v-~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS-------------VAV-NGSVAYVPQQPWIQNG 596 (1381)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce-------------EEE-cCeEEEeccccHhhCC
Confidence 34456789999999999999999999999999887772 122 4568899999988765
No 457
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.70 E-value=1.3e-08 Score=64.56 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+++++|+||||+|||||+++|++..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 346899999999999999999998754
No 458
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=1e-07 Score=64.02 Aligned_cols=62 Identities=26% Similarity=0.215 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+.|.|.+++|||||+++|++..+.... ....|...+..+.+. ....+-++||||+.+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~--YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP--YPFTTKGIHVGHFER-GYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC--CCccccceeEeeeec-CCceEEEecCCcccCC
Confidence 3478999999999999999999987664432 223344444455443 5668899999999875
No 459
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=7.1e-08 Score=67.05 Aligned_cols=63 Identities=29% Similarity=0.328 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..-.++|+|.+++|||||+|.|+|......+. ..+.|...-....++ ..+...++||.|+-..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcc
Confidence 34789999999999999999999998766542 222333333333443 6788999999998643
No 460
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.70 E-value=9.6e-08 Score=63.22 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=40.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--cc--------------CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFK--AS--------------AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g--------------~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+++|+|+.|+|||||++.|+...... .| ....+.+.........| ......++||||..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH
Confidence 48999999999999999996322210 01 11234444444455555 5678889999998654
No 461
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.69 E-value=8.4e-08 Score=57.40 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
+++++|++|+|||||++.+.+......-........ ........ ......++|+||..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF--KSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee--EEEEEEECCEEEEEEEEecCChH
Confidence 589999999999999999987665433111111111 11111111 12456788999864
No 462
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.69 E-value=4.6e-08 Score=65.95 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~ 99 (107)
.-|+|||-+++||||||++++...+...- ....|..+............+.+.|-||+.+.-....-...++++++.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIad--YpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIAD--YPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccC--CccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 35899999999999999999987665432 2334444444444444577899999999998755555667777777776
Q ss_pred cC
Q 038901 100 AK 101 (107)
Q Consensus 100 ~~ 101 (107)
+.
T Consensus 238 t~ 239 (369)
T COG0536 238 TR 239 (369)
T ss_pred hh
Confidence 53
No 463
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.69 E-value=1.1e-07 Score=57.92 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee--CCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK--DGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~d~p~~~~ 81 (107)
.++|+|+.|+|||||++.|++...... .....+........... ......++||||...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 589999999999999999987543221 11122222222222221 245778999999743
No 464
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.68 E-value=3e-08 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
++++|||+.|||||||+++|.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC
Confidence 5799999999999999999998654
No 465
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.3e-08 Score=69.23 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=48.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeE-eeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTT-CEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
......|..++|+|++++|||||+|+|+.......+ ...+++. .-...+. .+...+++.||.|+-.
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS--pv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS--PVPGTTRDAIEAQVT-VNGVPVRLSDTAGIRE 328 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC--CCCCcchhhheeEee-cCCeEEEEEecccccc
Confidence 334456689999999999999999999998775543 2233333 2223334 4788999999999976
No 466
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.68 E-value=2.3e-08 Score=64.48 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCCCCceEEEEEcCCCCCHHHHH-HHH
Q 038901 5 VIDGDWKPTSPSNGERTVVLLGRTGNGKSATG-NSI 39 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll-~~l 39 (107)
.+...........+|++++|+|+||||||||+ ..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 34456667778889999999999999999995 444
No 467
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.68 E-value=1.4e-08 Score=70.06 Aligned_cols=70 Identities=16% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee--eEEeeCCcEEEEEeCCCC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK--TTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~v~d~p~~ 79 (107)
.........+|+.++|||.||||||||-.+|++++... |.+...++...... .....+++.-.|||+|.-
T Consensus 303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred eccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 33445566788999999999999999999999999877 54443333322211 112234667788898843
No 468
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.68 E-value=1.8e-08 Score=62.77 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.|++++|+|+||||||||+++|+++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4689999999999999999999998754
No 469
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.67 E-value=1.3e-07 Score=66.90 Aligned_cols=60 Identities=33% Similarity=0.402 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+|+|+|.+|+|||||+|.|++...+... ...+.+.........+ ......++||||+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEP 98 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCC
Confidence 57999999999999999999986543222 1222333333333333 456688999999863
No 470
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.67 E-value=5.1e-08 Score=60.31 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+++|+|..|+|||||+|.|++......... ..+.+.........+ ......++|+||...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH
Confidence 379999999999999999988765432200 011111211222222 356778999999754
No 471
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.8e-08 Score=62.49 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
..........|++++|=||+|+|||||+++|-+.+.+++|.
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~ 67 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce
Confidence 34455667789999999999999999999999999998884
No 472
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.67 E-value=6.4e-09 Score=69.32 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+|||.|+||||||||++.|.++..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 448999999999999999999988765
No 473
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.66 E-value=1.8e-07 Score=63.59 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc----CCC--CceeeEeeeeeEEeeC---CcEEEEEeCCCCCCCCCCchH
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----AGS--SGVTTTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g----~~~--~~~~~~~~~~~~~~~~---~~~~~v~d~p~~~~~~~~~~~ 88 (107)
-...++++|++|+||||++|.|++......- ... ...+.........+.. .....|+||||+.+.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 3468999999999999999999987332221 000 0111112222111111 346799999999876433 45
Q ss_pred HHHHHHHHhh
Q 038901 89 VGKEIVKCLG 98 (107)
Q Consensus 89 ~~~~~~~~~~ 98 (107)
+++.++.++.
T Consensus 101 ~we~I~~yI~ 110 (373)
T COG5019 101 CWEPIVDYID 110 (373)
T ss_pred cHHHHHHHHH
Confidence 5555555543
No 474
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.66 E-value=2.1e-08 Score=70.51 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.......+|++++|+|+||||||||++ .++..+..|
T Consensus 24 ~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG 59 (504)
T TIGR03238 24 KFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG 59 (504)
T ss_pred CCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence 445566788999999999999999999 566666665
No 475
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.66 E-value=2.1e-08 Score=64.80 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
..+..+++|.|+||||||||++.|++...+..|.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 3456899999999999999999999998877663
No 476
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.66 E-value=1.7e-08 Score=65.92 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
...++|+|+||||||||+++|++...+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~ 52 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT 52 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3678999999999999999999887654
No 477
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-07 Score=62.94 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
+-..+++||++++|||||.|.+.|....... ....|+......+.........++||||+...+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 4467999999999999999999998664432 233333333222222357789999999998653
No 478
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.65 E-value=1.6e-07 Score=58.61 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.+.+...... ..+.........+ ......++|+||..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCH
Confidence 36679999999999999999987543111 1111111122222 34566788988853
No 479
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.65 E-value=1.6e-07 Score=56.83 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~ 80 (107)
.++|+|+.|+|||||++.+++......- ....+.........+.. .....++|+||..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5899999999999999999876543211 11111111111222211 1346899999853
No 480
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.65 E-value=1.8e-07 Score=56.76 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
.++++|++|+|||||++.+++....... ................ ......++|+||..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 5899999999999999999986543211 1111111111111111 13456788999853
No 481
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.64 E-value=1.7e-07 Score=56.83 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
..++++|++|+|||||++.+++...........+.... .....+. ......++|+||..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQE 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchH
Confidence 46899999999999999999987643311111111111 1112221 13456788999853
No 482
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.64 E-value=4.2e-07 Score=63.15 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++|+|.+++|||||+|+|++...
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~ 26 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV 26 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3699999999999999999998754
No 483
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.63 E-value=1.8e-07 Score=56.66 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~ 80 (107)
+++++|++|+|||||++.+++......- ................. .....++|+||..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 5899999999999999999876532211 11111111111222211 1356788999853
No 484
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.63 E-value=2.1e-07 Score=57.30 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
...++++|++|+|||||++.+.+...... ..+.........+ ......++|+||..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCH
Confidence 36799999999999999999987632211 1111111122222 35567899999875
No 485
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.63 E-value=7.7e-08 Score=61.26 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------CCCCceeeEeeeeeEEeeCCcEE
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSGVTTTCEMKTTVLKDGQVV 71 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 71 (107)
+++|+|+.|+|||||++.|+........ ....+.+.........+ .....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 4899999999999999999765432210 01123333333333444 56678
Q ss_pred EEEeCCCCCC
Q 038901 72 NVIDTPGLFD 81 (107)
Q Consensus 72 ~v~d~p~~~~ 81 (107)
.++||||...
T Consensus 80 ~liDTpG~~~ 89 (208)
T cd04166 80 IIADTPGHEQ 89 (208)
T ss_pred EEEECCcHHH
Confidence 8999999743
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.62 E-value=4e-08 Score=60.97 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
|++++|+||||||||||++.|++...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 57899999999999999999998754
No 487
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.62 E-value=2.6e-07 Score=60.06 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--ccC--------------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFK--ASA--------------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g~--------------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.++|+|+.|+|||||++.|+...... .|. ...+.+.........+ ......++||||..++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch
Confidence 37999999999999999997643211 010 1112222223333444 5678899999998764
No 488
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.62 E-value=2.3e-07 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+++++|+.|+|||||++.+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 489
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.62 E-value=2.4e-07 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+++++|++|+|||||++.+++...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~ 25 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987543
No 490
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=3.5e-07 Score=55.61 Aligned_cols=57 Identities=32% Similarity=0.434 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
....++++|.+|+|||||+|.+.+......+. ..+.+.... ........+++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~----~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQ----LVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeE----EEEcCCCEEEEECcCC
Confidence 34678999999999999999999755433221 112222111 1112346789999996
No 491
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.61 E-value=7.6e-08 Score=68.76 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
......|..+.|.||||||||||+++|.|+-+...|.
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~ 491 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK 491 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence 3445567999999999999999999999988766663
No 492
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.61 E-value=1.5e-07 Score=62.06 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--ccCCC--------------CceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFK--ASAGS--------------SGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g~~~--------------~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+++|+|++|+|||||++.|++..... .|... ...+.........+ ......++|+||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH
Confidence 37999999999999999997543221 11110 11111222223333 456778999999864
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.61 E-value=4.1e-08 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+|+.++|+|++|||||||++.|++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4679999999999999999999999864
No 494
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.60 E-value=2.3e-07 Score=56.23 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+++|+|+.|+|||||++.+++...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~ 25 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987543
No 495
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.60 E-value=2.7e-07 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+++|+|++|+|||||++.+++...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~ 29 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF 29 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999987543
No 496
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.59 E-value=2.2e-07 Score=65.82 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
....++|+|++|+|||||+|.|++....... ...+.+.........+ ......++||||+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~ 270 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLR 270 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcc
Confidence 3478999999999999999999987542211 1112222222222333 45566899999984
No 497
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.58 E-value=1.3e-07 Score=57.78 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+.|+++|++|+|||||+|+|.|..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 369999999999999999999864
No 498
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=3.1e-07 Score=59.73 Aligned_cols=82 Identities=26% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc-----CCCCceeeEeeeeeEEee-C--CcEEEEEeCCCCCCCCCCch
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----AGSSGVTTTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSE 87 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g-----~~~~~~~~~~~~~~~~~~-~--~~~~~v~d~p~~~~~~~~~~ 87 (107)
..-...|+++|++|.|||||+|.|..-...+++ ......+........... + +-...|+|||||.+. ...+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-InN~ 121 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-INND 121 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-cCcc
Confidence 334478999999999999999999654332221 111222322222211111 1 346789999999875 3334
Q ss_pred HHHHHHHHHhh
Q 038901 88 FVGKEIVKCLG 98 (107)
Q Consensus 88 ~~~~~~~~~~~ 98 (107)
..++-+.+++.
T Consensus 122 ncWePI~kyIn 132 (336)
T KOG1547|consen 122 NCWEPIEKYIN 132 (336)
T ss_pred chhHHHHHHHH
Confidence 55555555543
No 499
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.7e-07 Score=62.90 Aligned_cols=65 Identities=28% Similarity=0.308 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc----cCC-CCceeeEeeeeeEEeeC---CcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA----SAG-SSGVTTTCEMKTTVLKD---GQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~----g~~-~~~~~~~~~~~~~~~~~---~~~~~v~d~p~~~~~~ 83 (107)
...++++|++|.|||||+|.|++...... +.. ....+............ .-...|+||||+.+.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 36799999999999999999988733221 000 11111111111112111 2367899999998753
No 500
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.58 E-value=1.4e-07 Score=62.34 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc--ccCC------------------CCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFK--ASAG------------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~------------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
++|+|+|+.|+|||||++.|+...... .|.. .++.+.........+ ......++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 679999999999999999997532211 1111 111222222234444 5678899999998
Q ss_pred CCC
Q 038901 80 FDL 82 (107)
Q Consensus 80 ~~~ 82 (107)
.++
T Consensus 82 ~df 84 (267)
T cd04169 82 EDF 84 (267)
T ss_pred hHH
Confidence 653
Done!