Query 038901
Match_columns 107
No_of_seqs 196 out of 1534
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.6 4E-16 1.4E-20 105.3 4.2 81 13-98 24-105 (359)
2 1ji0_A ABC transporter; ATP bi 99.6 1.2E-16 4.1E-21 102.7 1.4 79 14-97 27-105 (240)
3 3rlf_A Maltose/maltodextrin im 99.6 4.1E-16 1.4E-20 105.9 3.6 77 13-97 23-99 (381)
4 3tif_A Uncharacterized ABC tra 99.6 1.2E-16 3.9E-21 102.5 0.8 79 13-96 25-106 (235)
5 2yyz_A Sugar ABC transporter, 99.6 9E-16 3.1E-20 103.6 4.1 78 13-98 23-100 (359)
6 3tui_C Methionine import ATP-b 99.6 4.5E-16 1.5E-20 105.2 2.4 82 11-97 46-129 (366)
7 1g29_1 MALK, maltose transport 99.6 1.7E-15 5.7E-20 102.8 5.1 79 14-97 24-105 (372)
8 1vpl_A ABC transporter, ATP-bi 99.6 4E-16 1.4E-20 101.2 1.9 77 14-97 36-112 (256)
9 1sgw_A Putative ABC transporte 99.6 9.3E-16 3.2E-20 97.1 3.4 73 14-97 30-102 (214)
10 2it1_A 362AA long hypothetical 99.6 1E-15 3.4E-20 103.5 3.7 77 13-97 23-99 (362)
11 1oxx_K GLCV, glucose, ABC tran 99.6 1.2E-15 4E-20 102.9 4.0 81 13-98 25-107 (353)
12 4g1u_C Hemin import ATP-bindin 99.6 4.2E-16 1.5E-20 101.5 1.3 78 14-97 32-109 (266)
13 1z47_A CYSA, putative ABC-tran 99.6 1E-15 3.4E-20 103.2 3.0 76 14-97 36-111 (355)
14 1v43_A Sugar-binding transport 99.6 1.1E-15 3.8E-20 103.6 3.0 77 13-97 31-107 (372)
15 2olj_A Amino acid ABC transpor 99.6 4.6E-16 1.6E-20 101.2 1.0 78 14-96 45-123 (263)
16 1g6h_A High-affinity branched- 99.6 1.5E-16 5.3E-21 103.1 -1.4 81 12-97 26-106 (257)
17 2pcj_A ABC transporter, lipopr 99.6 5.2E-16 1.8E-20 98.9 0.9 78 14-96 25-105 (224)
18 2nq2_C Hypothetical ABC transp 99.6 4.9E-15 1.7E-19 95.9 5.5 65 14-97 26-90 (253)
19 1mv5_A LMRA, multidrug resista 99.5 9.2E-16 3.1E-20 98.7 1.6 67 14-81 23-89 (243)
20 2qi9_C Vitamin B12 import ATP- 99.5 6.6E-16 2.2E-20 99.8 0.6 75 15-96 22-96 (249)
21 3d31_A Sulfate/molybdate ABC t 99.5 7.5E-16 2.6E-20 103.6 0.7 76 14-97 21-96 (348)
22 1b0u_A Histidine permease; ABC 99.5 8.3E-16 2.8E-20 99.9 0.8 79 13-96 26-116 (262)
23 2ixe_A Antigen peptide transpo 99.5 1E-15 3.5E-20 100.0 1.1 67 14-81 40-106 (271)
24 3lxx_A GTPase IMAP family memb 99.5 7.4E-14 2.5E-18 89.2 9.7 88 17-105 27-114 (239)
25 3nh6_A ATP-binding cassette SU 99.5 5.6E-16 1.9E-20 102.7 -0.5 75 15-96 76-150 (306)
26 2onk_A Molybdate/tungstate ABC 99.5 1.7E-15 5.8E-20 97.4 1.4 74 14-96 20-93 (240)
27 2ff7_A Alpha-hemolysin translo 99.5 9.7E-16 3.3E-20 98.9 0.0 67 14-81 30-96 (247)
28 3gfo_A Cobalt import ATP-bindi 99.5 1.9E-15 6.5E-20 98.9 0.5 64 14-78 29-94 (275)
29 2yz2_A Putative ABC transporte 99.5 4.7E-15 1.6E-19 96.6 2.2 76 13-97 27-103 (266)
30 2pze_A Cystic fibrosis transme 99.5 1.6E-14 5.5E-19 92.2 4.4 54 14-81 29-82 (229)
31 2d2e_A SUFC protein; ABC-ATPas 99.5 1.3E-15 4.3E-20 98.5 -1.0 77 14-95 24-102 (250)
32 2zu0_C Probable ATP-dependent 99.5 3.1E-15 1.1E-19 97.5 0.7 69 14-82 41-111 (267)
33 2cbz_A Multidrug resistance-as 99.5 1.5E-14 5.2E-19 92.8 3.8 63 14-96 26-88 (237)
34 2ghi_A Transport protein; mult 99.5 5.6E-15 1.9E-19 95.9 1.4 66 14-81 41-106 (260)
35 2ihy_A ABC transporter, ATP-bi 99.5 2.6E-15 8.7E-20 98.4 -0.4 65 14-79 42-108 (279)
36 2bbs_A Cystic fibrosis transme 99.4 9.1E-14 3.1E-18 91.5 5.0 53 15-81 60-112 (290)
37 3b5x_A Lipid A export ATP-bind 99.4 3.6E-14 1.2E-18 100.9 3.3 69 12-81 362-430 (582)
38 2pjz_A Hypothetical protein ST 99.4 3.6E-14 1.2E-18 92.3 2.0 71 14-97 26-97 (263)
39 3lxw_A GTPase IMAP family memb 99.4 4.5E-13 1.5E-17 86.2 7.0 88 17-105 19-107 (247)
40 3gd7_A Fusion complex of cysti 99.4 2.3E-14 7.8E-19 97.7 -0.1 66 14-81 42-107 (390)
41 3b60_A Lipid A export ATP-bind 99.4 3.7E-14 1.3E-18 100.8 0.9 75 15-96 365-439 (582)
42 4a82_A Cystic fibrosis transme 99.4 2.4E-14 8.1E-19 101.8 -0.6 67 15-82 363-429 (578)
43 2yl4_A ATP-binding cassette SU 99.4 3.6E-14 1.2E-18 101.1 0.3 66 15-81 366-431 (595)
44 3qf4_B Uncharacterized ABC tra 99.4 3.4E-14 1.2E-18 101.3 0.2 76 14-96 376-451 (598)
45 3qf4_A ABC transporter, ATP-bi 99.4 3.8E-14 1.3E-18 100.9 -0.9 66 15-81 365-430 (587)
46 1u0l_A Probable GTPase ENGC; p 99.3 1E-12 3.5E-17 86.8 5.1 63 18-81 168-233 (301)
47 2xtp_A GTPase IMAP family memb 99.3 1.1E-11 3.8E-16 79.9 9.4 86 18-104 21-106 (260)
48 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-12 7.7E-17 85.2 6.2 62 18-81 164-228 (302)
49 1htw_A HI0065; nucleotide-bind 99.3 7.2E-13 2.5E-17 80.3 3.2 58 16-80 30-87 (158)
50 4f4c_A Multidrug resistance pr 99.3 1.1E-13 3.7E-18 105.7 -0.6 67 15-82 1101-1167(1321)
51 3bk7_A ABC transporter ATP-bin 99.3 5E-12 1.7E-16 90.4 7.4 51 17-81 380-430 (607)
52 1yqt_A RNAse L inhibitor; ATP- 99.3 6.8E-12 2.3E-16 88.6 7.4 50 17-80 310-359 (538)
53 1t9h_A YLOQ, probable GTPase E 99.3 8.5E-13 2.9E-17 87.5 2.4 64 16-82 170-237 (307)
54 3g5u_A MCG1178, multidrug resi 99.3 5.9E-13 2E-17 101.5 0.9 67 15-82 412-478 (1284)
55 3sop_A Neuronal-specific septi 99.2 1.3E-12 4.4E-17 85.3 1.6 31 20-50 3-33 (270)
56 4f4c_A Multidrug resistance pr 99.2 6.5E-13 2.2E-17 101.5 0.0 67 15-82 440-506 (1321)
57 3g5u_A MCG1178, multidrug resi 99.2 1.6E-12 5.5E-17 99.1 2.0 71 11-82 1051-1121(1284)
58 3ozx_A RNAse L inhibitor; ATP 99.2 2.6E-11 9E-16 85.6 5.9 34 17-50 292-325 (538)
59 3b85_A Phosphate starvation-in 99.2 5.2E-12 1.8E-16 79.6 1.5 56 17-77 20-75 (208)
60 3ozx_A RNAse L inhibitor; ATP 99.2 2.1E-11 7.2E-16 86.1 4.7 34 17-50 23-56 (538)
61 1tq4_A IIGP1, interferon-induc 99.1 9.9E-11 3.4E-15 80.4 6.8 62 20-81 70-132 (413)
62 3j16_B RLI1P; ribosome recycli 99.1 4.7E-11 1.6E-15 85.4 4.6 35 16-50 100-134 (608)
63 1znw_A Guanylate kinase, GMP k 99.1 2.2E-11 7.4E-16 76.3 2.6 30 15-44 16-45 (207)
64 1yqt_A RNAse L inhibitor; ATP- 99.1 4.5E-11 1.5E-15 84.5 4.4 35 15-49 43-77 (538)
65 1z6g_A Guanylate kinase; struc 99.1 5.4E-12 1.9E-16 79.8 -0.6 34 10-43 14-47 (218)
66 4a9a_A Ribosome-interacting GT 99.1 3.8E-10 1.3E-14 76.6 8.4 76 20-98 73-148 (376)
67 3k53_A Ferrous iron transport 99.1 3.9E-10 1.3E-14 73.2 8.0 62 20-84 4-65 (271)
68 3b9q_A Chloroplast SRP recepto 99.1 4.6E-12 1.6E-16 83.8 -1.2 37 13-49 94-130 (302)
69 2gj8_A MNME, tRNA modification 99.1 4.8E-10 1.7E-14 68.1 7.8 63 18-82 3-65 (172)
70 2rcn_A Probable GTPase ENGC; Y 99.1 5.9E-11 2E-15 80.1 3.9 34 18-51 214-248 (358)
71 3def_A T7I23.11 protein; chlor 99.1 6.8E-10 2.3E-14 71.8 8.6 77 18-96 35-111 (262)
72 3szr_A Interferon-induced GTP- 99.1 2.4E-11 8.2E-16 86.9 1.9 72 21-97 47-121 (608)
73 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.3E-10 1.1E-14 77.3 7.3 32 13-44 14-45 (392)
74 3aez_A Pantothenate kinase; tr 99.1 6.2E-11 2.1E-15 78.7 3.6 33 16-48 87-119 (312)
75 3j16_B RLI1P; ribosome recycli 99.1 2.4E-10 8.2E-15 81.8 6.7 31 19-49 378-408 (608)
76 2gza_A Type IV secretion syste 99.1 5.4E-11 1.8E-15 80.4 3.1 34 17-50 173-206 (361)
77 3bk7_A ABC transporter ATP-bin 99.1 9.4E-11 3.2E-15 83.9 4.3 35 15-49 113-147 (607)
78 2i3b_A HCR-ntpase, human cance 99.1 9.6E-11 3.3E-15 72.8 3.6 53 19-76 1-53 (189)
79 1pui_A ENGB, probable GTP-bind 99.1 2E-10 6.8E-15 71.4 5.0 59 14-81 21-84 (210)
80 1s96_A Guanylate kinase, GMP k 99.0 8.6E-11 3E-15 74.5 2.9 33 13-45 10-42 (219)
81 2wji_A Ferrous iron transport 99.0 1.2E-09 4E-14 65.8 7.7 60 20-82 4-63 (165)
82 3iby_A Ferrous iron transport 99.0 1.6E-09 5.4E-14 70.1 8.6 61 20-83 2-62 (256)
83 2og2_A Putative signal recogni 99.0 1.7E-11 5.9E-16 82.8 -1.3 37 13-49 151-187 (359)
84 2qag_B Septin-6, protein NEDD5 99.0 1E-09 3.4E-14 75.6 7.1 29 15-43 36-66 (427)
85 1ega_A Protein (GTP-binding pr 99.0 9.4E-10 3.2E-14 72.6 6.7 61 18-80 7-67 (301)
86 1wf3_A GTP-binding protein; GT 99.0 3.9E-09 1.3E-13 69.7 9.6 61 20-82 8-68 (301)
87 3a00_A Guanylate kinase, GMP k 99.0 1.1E-10 3.9E-15 71.9 2.1 27 19-45 1-27 (186)
88 2wjg_A FEOB, ferrous iron tran 99.0 2.4E-09 8.4E-14 65.3 8.0 61 19-82 7-67 (188)
89 3tr0_A Guanylate kinase, GMP k 99.0 1.6E-10 5.6E-15 71.7 2.7 28 17-44 5-32 (205)
90 1h65_A Chloroplast outer envel 99.0 2.4E-09 8E-14 69.5 8.3 63 19-83 39-101 (270)
91 3i8s_A Ferrous iron transport 99.0 2E-09 7E-14 70.1 7.7 61 20-83 4-64 (274)
92 1puj_A YLQF, conserved hypothe 99.0 3.2E-09 1.1E-13 69.6 8.5 63 18-85 119-181 (282)
93 3e70_C DPA, signal recognition 99.0 3.9E-11 1.3E-15 80.2 -0.6 34 16-49 126-159 (328)
94 2eyu_A Twitching motility prot 99.0 1.4E-10 4.7E-15 75.3 1.9 33 16-48 22-55 (261)
95 2yhs_A FTSY, cell division pro 99.0 2.3E-11 7.8E-16 85.0 -1.9 38 12-49 286-323 (503)
96 3iev_A GTP-binding protein ERA 99.0 2.8E-09 9.4E-14 70.6 8.1 64 18-83 9-73 (308)
97 1lvg_A Guanylate kinase, GMP k 99.0 1.5E-10 5E-15 72.2 1.8 27 18-44 3-29 (198)
98 3lnc_A Guanylate kinase, GMP k 99.0 1.9E-10 6.4E-15 73.0 2.2 30 14-43 22-52 (231)
99 2npi_A Protein CLP1; CLP1-PCF1 99.0 1.6E-10 5.5E-15 80.3 2.0 32 17-48 136-167 (460)
100 3euj_A Chromosome partition pr 99.0 2.9E-10 9.9E-15 79.4 3.0 37 15-52 26-62 (483)
101 4dhe_A Probable GTP-binding pr 98.9 1.5E-09 5.3E-14 67.9 5.9 64 18-82 28-92 (223)
102 1rj9_A FTSY, signal recognitio 98.9 3.4E-10 1.1E-14 75.0 2.5 33 17-49 100-132 (304)
103 4gp7_A Metallophosphoesterase; 98.9 3.8E-10 1.3E-14 68.8 2.5 23 16-38 6-28 (171)
104 1udx_A The GTP-binding protein 98.9 1.9E-09 6.6E-14 74.1 6.1 63 17-81 155-217 (416)
105 1zp6_A Hypothetical protein AT 98.9 8.9E-10 3E-14 67.7 3.9 27 16-42 6-32 (191)
106 3t5d_A Septin-7; GTP-binding p 98.9 3.7E-09 1.3E-13 68.7 7.0 63 20-82 9-78 (274)
107 3c8u_A Fructokinase; YP_612366 98.9 5.6E-10 1.9E-14 69.9 2.9 30 16-45 19-48 (208)
108 1mky_A Probable GTP-binding pr 98.9 3.5E-09 1.2E-13 73.1 6.9 60 19-80 180-239 (439)
109 3a1s_A Iron(II) transport prot 98.9 7.6E-09 2.6E-13 66.9 8.1 62 19-83 5-66 (258)
110 2dyk_A GTP-binding protein; GT 98.9 1.1E-08 3.7E-13 60.7 8.2 61 20-82 2-62 (161)
111 2iw3_A Elongation factor 3A; a 98.9 4.3E-10 1.5E-14 83.8 2.4 36 15-50 695-730 (986)
112 2pt7_A CAG-ALFA; ATPase, prote 98.9 5.9E-10 2E-14 74.5 2.8 32 18-49 170-201 (330)
113 1ye8_A Protein THEP1, hypothet 98.9 6.4E-10 2.2E-14 68.4 2.7 24 21-44 2-25 (178)
114 2v9p_A Replication protein E1; 98.9 4.9E-10 1.7E-14 74.2 2.1 30 14-43 121-150 (305)
115 1kgd_A CASK, peripheral plasma 98.9 7.2E-10 2.5E-14 68.0 2.6 27 18-44 4-30 (180)
116 3asz_A Uridine kinase; cytidin 98.9 5.8E-10 2E-14 69.7 2.2 29 16-44 3-31 (211)
117 2obl_A ESCN; ATPase, hydrolase 98.9 5.1E-10 1.7E-14 75.3 2.0 36 14-49 66-101 (347)
118 1sq5_A Pantothenate kinase; P- 98.9 1E-09 3.6E-14 72.6 2.8 33 16-48 77-111 (308)
119 2dpy_A FLII, flagellum-specifi 98.8 1.1E-09 3.7E-14 75.8 2.8 36 14-49 152-187 (438)
120 4a74_A DNA repair and recombin 98.8 1.2E-09 4.1E-14 68.7 2.7 30 15-44 21-50 (231)
121 1oix_A RAS-related protein RAB 98.8 5.8E-09 2E-13 64.2 5.7 26 20-45 30-55 (191)
122 2bbw_A Adenylate kinase 4, AK4 98.8 2E-09 6.7E-14 68.9 3.6 30 19-48 27-59 (246)
123 2jeo_A Uridine-cytidine kinase 98.8 1.6E-09 5.6E-14 69.4 3.2 33 11-43 17-49 (245)
124 1lw7_A Transcriptional regulat 98.8 1.1E-09 3.7E-14 73.9 2.5 29 19-47 170-198 (365)
125 2ohf_A Protein OLA1, GTP-bindi 98.8 8.1E-09 2.8E-13 70.6 6.6 30 15-44 18-47 (396)
126 3b1v_A Ferrous iron uptake tra 98.8 6.8E-09 2.3E-13 67.7 6.0 60 20-83 4-63 (272)
127 2qtf_A Protein HFLX, GTP-bindi 98.8 6.7E-09 2.3E-13 70.3 6.1 59 20-81 180-238 (364)
128 2qm8_A GTPase/ATPase; G protei 98.8 1.2E-09 4E-14 73.3 2.1 34 15-48 51-84 (337)
129 2ehv_A Hypothetical protein PH 98.8 2.4E-09 8.3E-14 68.1 3.5 26 15-40 26-51 (251)
130 2f9l_A RAB11B, member RAS onco 98.8 7.7E-09 2.6E-13 63.9 5.7 25 20-44 6-30 (199)
131 2j41_A Guanylate kinase; GMP, 98.8 2.4E-09 8.3E-14 66.4 3.4 32 17-48 4-35 (207)
132 3h2y_A GTPase family protein; 98.8 3.4E-09 1.2E-13 71.8 4.4 63 19-84 160-226 (368)
133 3ec1_A YQEH GTPase; atnos1, at 98.8 1E-09 3.5E-14 74.4 1.8 60 19-83 162-226 (369)
134 2qag_C Septin-7; cell cycle, c 98.8 1.5E-08 5.3E-13 69.7 7.2 29 20-48 32-60 (418)
135 3tau_A Guanylate kinase, GMP k 98.8 3.7E-09 1.3E-13 66.2 3.5 29 17-45 6-34 (208)
136 3t34_A Dynamin-related protein 98.8 2.7E-08 9.1E-13 67.0 7.8 24 20-43 35-58 (360)
137 1mky_A Probable GTP-binding pr 98.8 1.5E-08 5.1E-13 69.9 6.7 60 20-81 2-61 (439)
138 4e22_A Cytidylate kinase; P-lo 98.8 3.5E-09 1.2E-13 68.2 3.3 33 17-49 25-60 (252)
139 1p9r_A General secretion pathw 98.8 2.5E-09 8.6E-14 73.6 2.6 32 17-48 165-196 (418)
140 2oap_1 GSPE-2, type II secreti 98.8 3.2E-09 1.1E-13 74.7 3.1 32 18-49 259-290 (511)
141 2qu8_A Putative nucleolar GTP- 98.8 5.1E-08 1.7E-12 61.5 8.4 62 17-81 27-88 (228)
142 2lkc_A Translation initiation 98.8 2.2E-08 7.6E-13 60.3 6.4 61 18-81 7-67 (178)
143 2e87_A Hypothetical protein PH 98.8 3.7E-08 1.3E-12 66.3 8.0 62 18-82 166-227 (357)
144 1z0j_A RAB-22, RAS-related pro 98.8 1.8E-08 6.1E-13 60.2 5.8 60 20-81 7-67 (170)
145 2qnr_A Septin-2, protein NEDD5 98.8 9.2E-09 3.1E-13 67.9 4.8 29 20-48 19-48 (301)
146 2zej_A Dardarin, leucine-rich 98.8 2E-08 6.8E-13 61.3 6.0 24 20-43 3-26 (184)
147 1svi_A GTP-binding protein YSX 98.8 2.7E-08 9.3E-13 60.9 6.6 61 17-82 21-82 (195)
148 3cnl_A YLQF, putative uncharac 98.8 1E-08 3.4E-13 66.6 4.8 60 20-84 100-159 (262)
149 1jal_A YCHF protein; nucleotid 98.7 5.1E-09 1.8E-13 70.8 3.5 24 20-43 3-26 (363)
150 2erx_A GTP-binding protein DI- 98.7 6.1E-08 2.1E-12 57.8 7.7 61 19-82 3-64 (172)
151 2ewv_A Twitching motility prot 98.7 2.6E-09 8.9E-14 72.5 1.7 33 16-48 133-166 (372)
152 2bdt_A BH3686; alpha-beta prot 98.7 4.6E-09 1.6E-13 64.6 2.7 23 19-41 2-24 (189)
153 4eun_A Thermoresistant glucoki 98.7 5.3E-09 1.8E-13 65.0 3.0 29 15-43 25-53 (200)
154 2oil_A CATX-8, RAS-related pro 98.7 2.8E-08 9.7E-13 60.8 6.2 62 19-82 25-87 (193)
155 3jvv_A Twitching mobility prot 98.7 3E-09 1E-13 71.8 1.8 30 17-46 121-150 (356)
156 1ek0_A Protein (GTP-binding pr 98.7 2.4E-08 8.2E-13 59.5 5.6 60 20-81 4-64 (170)
157 4dcu_A GTP-binding protein ENG 98.7 1.1E-08 3.7E-13 70.9 4.6 61 19-81 23-83 (456)
158 2gf9_A RAS-related protein RAB 98.7 4.9E-08 1.7E-12 59.6 7.1 62 18-81 21-83 (189)
159 1ksh_A ARF-like protein 2; sma 98.7 5.9E-08 2E-12 59.0 7.4 57 17-79 16-72 (186)
160 3ney_A 55 kDa erythrocyte memb 98.7 5.7E-09 2E-13 65.2 2.8 31 14-44 14-44 (197)
161 1z08_A RAS-related protein RAB 98.7 4.2E-08 1.4E-12 58.6 6.4 59 20-80 7-66 (170)
162 3tw8_B RAS-related protein RAB 98.7 2.8E-08 9.7E-13 59.8 5.6 59 19-80 9-69 (181)
163 1z2a_A RAS-related protein RAB 98.7 3.4E-08 1.2E-12 58.8 5.9 61 19-81 5-66 (168)
164 3pqc_A Probable GTP-binding pr 98.7 4.1E-08 1.4E-12 59.9 6.4 60 17-81 21-80 (195)
165 1r2q_A RAS-related protein RAB 98.7 3.2E-08 1.1E-12 59.0 5.6 60 20-81 7-67 (170)
166 1f5n_A Interferon-induced guan 98.7 3.9E-08 1.3E-12 70.2 6.9 65 18-82 37-104 (592)
167 2qag_A Septin-2, protein NEDD5 98.7 6.5E-08 2.2E-12 65.3 7.7 63 20-82 38-108 (361)
168 3oes_A GTPase rhebl1; small GT 98.7 6.3E-08 2.1E-12 59.8 6.9 65 14-82 19-85 (201)
169 2fg5_A RAB-22B, RAS-related pr 98.7 4.2E-08 1.4E-12 60.2 6.0 61 18-80 22-83 (192)
170 1qhl_A Protein (cell division 98.7 4.3E-10 1.5E-14 71.7 -3.2 31 20-50 28-58 (227)
171 1upt_A ARL1, ADP-ribosylation 98.7 9.2E-08 3.1E-12 57.1 7.2 57 18-80 6-62 (171)
172 3qq5_A Small GTP-binding prote 98.7 1.6E-08 5.6E-13 69.6 4.3 67 17-84 32-98 (423)
173 3q85_A GTP-binding protein REM 98.7 4E-08 1.4E-12 58.7 5.6 61 20-82 3-64 (169)
174 3gee_A MNME, tRNA modification 98.7 2.5E-08 8.7E-13 69.6 5.2 62 19-82 233-294 (476)
175 1wms_A RAB-9, RAB9, RAS-relate 98.7 4.8E-08 1.7E-12 58.7 5.8 59 19-80 7-67 (177)
176 3kta_A Chromosome segregation 98.7 1E-08 3.4E-13 62.6 2.8 28 18-46 26-53 (182)
177 2cxx_A Probable GTP-binding pr 98.7 1.7E-07 5.9E-12 56.9 8.4 56 21-83 3-58 (190)
178 2vp4_A Deoxynucleoside kinase; 98.7 9.7E-09 3.3E-13 65.2 2.8 28 15-42 16-43 (230)
179 1zbd_A Rabphilin-3A; G protein 98.7 6.7E-08 2.3E-12 59.6 6.6 60 20-81 9-69 (203)
180 2efe_B Small GTP-binding prote 98.7 5.3E-08 1.8E-12 58.8 5.9 61 19-81 12-73 (181)
181 3uie_A Adenylyl-sulfate kinase 98.7 1.2E-08 4.2E-13 63.3 3.1 28 17-44 23-50 (200)
182 1kao_A RAP2A; GTP-binding prot 98.7 1E-07 3.5E-12 56.5 7.1 59 20-82 4-64 (167)
183 1nij_A Hypothetical protein YJ 98.7 1.3E-08 4.4E-13 67.6 3.3 25 19-43 4-28 (318)
184 1z0f_A RAB14, member RAS oncog 98.7 5.6E-08 1.9E-12 58.4 5.9 61 19-81 15-76 (179)
185 3r7w_A Gtpase1, GTP-binding pr 98.7 7.7E-08 2.6E-12 63.6 7.0 61 19-80 3-63 (307)
186 2h57_A ADP-ribosylation factor 98.7 7.8E-08 2.7E-12 58.8 6.5 62 17-82 19-80 (190)
187 1ky3_A GTP-binding protein YPT 98.7 5.5E-08 1.9E-12 58.6 5.7 26 18-43 7-32 (182)
188 3clv_A RAB5 protein, putative; 98.6 1.2E-07 4E-12 58.0 7.2 27 18-44 6-32 (208)
189 2dby_A GTP-binding protein; GD 98.6 3.4E-08 1.2E-12 67.0 5.1 24 20-43 2-25 (368)
190 1g16_A RAS-related protein SEC 98.6 4.4E-08 1.5E-12 58.4 5.1 60 20-81 4-64 (170)
191 2y8e_A RAB-protein 6, GH09086P 98.6 5.6E-08 1.9E-12 58.4 5.6 59 20-81 15-75 (179)
192 3tkl_A RAS-related protein RAB 98.6 5.7E-08 2E-12 59.4 5.7 60 19-81 16-77 (196)
193 2nzj_A GTP-binding protein REM 98.6 7.8E-08 2.7E-12 57.6 6.2 59 19-81 4-64 (175)
194 1z06_A RAS-related protein RAB 98.6 8E-08 2.7E-12 58.7 6.2 61 18-80 19-80 (189)
195 1knq_A Gluconate kinase; ALFA/ 98.6 2E-08 6.9E-13 60.9 3.4 26 17-42 6-31 (175)
196 1vg8_A RAS-related protein RAB 98.6 7.9E-08 2.7E-12 59.3 6.1 61 18-80 7-68 (207)
197 3cph_A RAS-related protein SEC 98.6 7.5E-08 2.6E-12 59.6 6.1 62 17-81 18-81 (213)
198 2fn4_A P23, RAS-related protei 98.6 2.9E-07 1E-11 55.3 8.5 61 18-82 8-70 (181)
199 4bas_A ADP-ribosylation factor 98.6 1.3E-07 4.4E-12 57.9 7.0 63 15-81 13-75 (199)
200 2dy1_A Elongation factor G; tr 98.6 7.2E-08 2.5E-12 69.7 6.6 66 16-82 6-87 (665)
201 1m2o_B GTP-binding protein SAR 98.6 1.1E-07 3.7E-12 58.4 6.6 57 19-81 23-79 (190)
202 2q3h_A RAS homolog gene family 98.6 1.1E-07 3.8E-12 58.5 6.6 63 15-82 16-81 (201)
203 2f1r_A Molybdopterin-guanine d 98.6 1.8E-09 6.3E-14 66.0 -1.5 27 20-46 3-29 (171)
204 4dsu_A GTPase KRAS, isoform 2B 98.6 2E-07 6.9E-12 56.5 7.7 60 19-82 4-65 (189)
205 2hjg_A GTP-binding protein ENG 98.6 1.3E-08 4.5E-13 70.2 2.5 60 20-81 4-63 (436)
206 1u8z_A RAS-related protein RAL 98.6 1.4E-07 4.9E-12 55.9 6.8 60 19-82 4-65 (168)
207 1x3s_A RAS-related protein RAB 98.6 7.5E-08 2.6E-12 58.8 5.6 61 19-81 15-76 (195)
208 1kag_A SKI, shikimate kinase I 98.6 1.3E-08 4.3E-13 61.6 2.1 26 19-44 4-29 (173)
209 1fzq_A ADP-ribosylation factor 98.6 1.7E-07 5.9E-12 57.0 7.1 58 18-81 15-72 (181)
210 1cr0_A DNA primase/helicase; R 98.6 1.1E-08 3.9E-13 66.9 1.8 35 14-48 30-64 (296)
211 2il1_A RAB12; G-protein, GDP, 98.6 7.9E-08 2.7E-12 59.0 5.5 61 19-81 26-87 (192)
212 2bme_A RAB4A, RAS-related prot 98.6 7.5E-08 2.6E-12 58.4 5.3 59 19-80 10-70 (186)
213 2bcg_Y Protein YP2, GTP-bindin 98.6 1.1E-07 3.6E-12 58.9 6.0 62 19-82 8-70 (206)
214 2ce2_X GTPase HRAS; signaling 98.6 1.8E-07 6.1E-12 55.3 6.8 60 20-82 4-64 (166)
215 1zd9_A ADP-ribosylation factor 98.6 1.5E-07 5E-12 57.6 6.5 58 18-80 21-78 (188)
216 2g6b_A RAS-related protein RAB 98.6 1.4E-07 4.7E-12 56.9 6.3 61 19-81 10-72 (180)
217 2p5s_A RAS and EF-hand domain 98.6 9.1E-08 3.1E-12 59.0 5.6 64 17-82 26-90 (199)
218 1c1y_A RAS-related protein RAP 98.6 1.6E-07 5.3E-12 55.8 6.5 59 20-82 4-64 (167)
219 2iw3_A Elongation factor 3A; a 98.6 1.9E-08 6.6E-13 75.2 2.9 27 15-41 457-483 (986)
220 3bc1_A RAS-related protein RAB 98.6 1.4E-07 4.7E-12 57.3 6.3 25 19-43 11-35 (195)
221 3ux8_A Excinuclease ABC, A sub 98.6 2.2E-08 7.6E-13 72.3 3.2 28 9-36 34-61 (670)
222 3ec2_A DNA replication protein 98.6 9.2E-09 3.1E-13 62.8 1.0 31 18-48 37-67 (180)
223 1jwy_B Dynamin A GTPase domain 98.6 1.7E-07 5.7E-12 61.7 7.1 26 19-44 24-49 (315)
224 3t5g_A GTP-binding protein RHE 98.6 1.3E-07 4.4E-12 57.2 6.0 60 19-82 6-67 (181)
225 1rz3_A Hypothetical protein rb 98.6 1.8E-08 6.2E-13 62.7 2.2 29 16-44 19-47 (201)
226 1r8s_A ADP-ribosylation factor 98.6 1.4E-07 4.8E-12 56.0 5.9 55 21-81 2-56 (164)
227 2gf0_A GTP-binding protein DI- 98.6 1.9E-07 6.4E-12 57.2 6.6 62 18-82 7-69 (199)
228 2a9k_A RAS-related protein RAL 98.6 2.5E-07 8.4E-12 55.9 7.0 61 18-82 17-79 (187)
229 1moz_A ARL1, ADP-ribosylation 98.6 6.3E-08 2.2E-12 58.6 4.3 59 17-81 16-74 (183)
230 3geh_A MNME, tRNA modification 98.6 2.1E-08 7.2E-13 69.8 2.4 62 19-82 224-285 (462)
231 1f6b_A SAR1; gtpases, N-termin 98.6 1.1E-07 3.7E-12 58.8 5.4 56 20-81 26-81 (198)
232 2bov_A RAla, RAS-related prote 98.6 2.9E-07 9.9E-12 56.6 7.3 61 18-82 13-75 (206)
233 2a5j_A RAS-related protein RAB 98.6 1.3E-07 4.3E-12 57.9 5.6 61 19-81 21-82 (191)
234 1xzp_A Probable tRNA modificat 98.6 2.6E-08 8.8E-13 69.7 2.6 62 19-82 243-305 (482)
235 3kkq_A RAS-related protein M-R 98.6 2.2E-07 7.6E-12 56.2 6.5 26 18-43 17-42 (183)
236 3q72_A GTP-binding protein RAD 98.5 1.2E-07 4.1E-12 56.4 5.1 58 20-81 3-61 (166)
237 2h17_A ADP-ribosylation factor 98.5 7.1E-08 2.4E-12 58.6 4.1 57 18-80 20-76 (181)
238 1tf7_A KAIC; homohexamer, hexa 98.5 1.9E-08 6.5E-13 70.8 1.7 34 15-48 35-70 (525)
239 2www_A Methylmalonic aciduria 98.5 2.5E-08 8.5E-13 67.1 2.1 28 18-45 73-100 (349)
240 2o52_A RAS-related protein RAB 98.5 1.2E-07 4.2E-12 58.5 5.1 58 19-79 25-84 (200)
241 2kjq_A DNAA-related protein; s 98.5 2.8E-08 9.7E-13 59.3 2.1 28 18-45 35-62 (149)
242 1zj6_A ADP-ribosylation factor 98.5 2.5E-07 8.5E-12 56.3 6.4 59 18-82 15-73 (187)
243 2b6h_A ADP-ribosylation factor 98.5 3.1E-07 1.1E-11 56.4 6.8 60 17-82 27-86 (192)
244 1lnz_A SPO0B-associated GTP-bi 98.5 2.3E-08 8E-13 67.1 1.8 58 21-80 160-217 (342)
245 4djt_A GTP-binding nuclear pro 98.5 6.3E-08 2.2E-12 60.4 3.6 61 19-81 11-73 (218)
246 2w0m_A SSO2452; RECA, SSPF, un 98.5 2.3E-08 8E-13 62.7 1.6 30 16-45 20-49 (235)
247 2ew1_A RAS-related protein RAB 98.5 1.8E-07 6E-12 58.1 5.6 59 19-80 26-86 (201)
248 2ged_A SR-beta, signal recogni 98.5 1E-07 3.6E-12 58.2 4.3 58 18-82 47-104 (193)
249 2atv_A RERG, RAS-like estrogen 98.5 4.6E-07 1.6E-11 55.6 7.1 62 17-81 26-88 (196)
250 3con_A GTPase NRAS; structural 98.5 3E-07 1E-11 56.0 6.3 58 19-80 21-80 (190)
251 3ux8_A Excinuclease ABC, A sub 98.5 3.1E-08 1.1E-12 71.5 2.1 29 12-40 341-369 (670)
252 2fh5_B SR-beta, signal recogni 98.5 3.2E-07 1.1E-11 57.0 6.4 58 18-80 6-65 (214)
253 2x77_A ADP-ribosylation factor 98.5 2E-07 6.8E-12 56.8 5.3 59 17-81 20-78 (189)
254 2hjg_A GTP-binding protein ENG 98.5 8.6E-08 3E-12 66.1 3.9 62 18-81 174-235 (436)
255 3cbq_A GTP-binding protein REM 98.5 2.2E-07 7.4E-12 57.3 5.3 26 18-43 22-47 (195)
256 2qt1_A Nicotinamide riboside k 98.5 1.6E-07 5.4E-12 58.4 4.7 31 13-43 15-45 (207)
257 1mh1_A RAC1; GTP-binding, GTPa 98.5 3.8E-07 1.3E-11 55.1 6.2 25 19-43 5-29 (186)
258 2hxs_A RAB-26, RAS-related pro 98.5 1.8E-07 6.2E-12 56.2 4.7 63 18-82 5-69 (178)
259 3llu_A RAS-related GTP-binding 98.5 3.8E-07 1.3E-11 56.1 6.2 67 15-82 16-82 (196)
260 3tqc_A Pantothenate kinase; bi 98.5 6.9E-08 2.4E-12 64.4 2.8 27 18-44 91-117 (321)
261 3cpj_B GTP-binding protein YPT 98.5 3E-07 1E-11 57.7 5.6 60 19-81 13-74 (223)
262 3cr8_A Sulfate adenylyltranfer 98.5 2.8E-08 9.6E-13 70.5 0.9 33 16-48 366-398 (552)
263 1wxq_A GTP-binding protein; st 98.5 2.8E-07 9.4E-12 63.1 5.5 23 21-43 2-24 (397)
264 4aby_A DNA repair protein RECN 98.5 1.6E-08 5.4E-13 69.0 -0.6 31 13-44 55-85 (415)
265 4gzl_A RAS-related C3 botulinu 98.5 6.3E-07 2.1E-11 55.5 6.7 26 17-42 28-53 (204)
266 2yc2_C IFT27, small RAB-relate 98.4 9.5E-08 3.2E-12 58.9 2.9 25 18-42 19-43 (208)
267 2fv8_A H6, RHO-related GTP-bin 98.4 4.1E-07 1.4E-11 56.4 5.8 60 19-82 25-86 (207)
268 3vqt_A RF-3, peptide chain rel 98.4 2.2E-07 7.4E-12 65.9 5.0 65 18-83 30-114 (548)
269 2qor_A Guanylate kinase; phosp 98.4 1.3E-07 4.4E-12 58.8 3.4 29 15-43 8-36 (204)
270 3reg_A RHO-like small GTPase; 98.4 4.1E-07 1.4E-11 55.7 5.6 28 17-44 21-48 (194)
271 2f7s_A C25KG, RAS-related prot 98.4 2.8E-07 9.6E-12 57.4 4.8 25 19-43 25-49 (217)
272 1nrj_B SR-beta, signal recogni 98.4 2.2E-07 7.5E-12 57.9 4.3 26 18-43 11-36 (218)
273 2x8a_A Nuclear valosin-contain 98.4 1.1E-07 3.9E-12 61.9 2.9 24 22-45 47-70 (274)
274 2aka_B Dynamin-1; fusion prote 98.4 8.1E-07 2.8E-11 57.9 7.0 27 18-44 25-51 (299)
275 3vaa_A Shikimate kinase, SK; s 98.4 1.7E-07 6E-12 58.0 3.5 30 13-42 19-48 (199)
276 1w1w_A Structural maintenance 98.4 9.5E-08 3.2E-12 65.7 2.5 30 18-47 25-54 (430)
277 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 1.6E-07 5.6E-12 56.0 3.3 21 20-40 24-44 (149)
278 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 1.5E-07 5.1E-12 63.7 3.5 22 18-40 23-44 (365)
279 1wb9_A DNA mismatch repair pro 98.4 1.1E-07 3.9E-12 70.0 3.0 27 17-43 605-631 (800)
280 1cke_A CK, MSSA, protein (cyti 98.4 1.2E-07 4.2E-12 59.5 2.8 25 19-43 5-29 (227)
281 3dz8_A RAS-related protein RAB 98.4 6.1E-08 2.1E-12 59.4 1.4 24 20-43 24-47 (191)
282 1m7b_A RND3/RHOE small GTP-bin 98.4 5.1E-07 1.7E-11 54.9 5.4 59 19-80 7-66 (184)
283 2px0_A Flagellar biosynthesis 98.4 8.2E-08 2.8E-12 63.3 2.0 32 17-48 103-134 (296)
284 4dcu_A GTP-binding protein ENG 98.4 3.5E-07 1.2E-11 63.4 5.1 63 17-81 193-255 (456)
285 1jjv_A Dephospho-COA kinase; P 98.4 2E-07 6.7E-12 57.9 3.5 23 20-42 3-25 (206)
286 2j1l_A RHO-related GTP-binding 98.4 8.8E-07 3E-11 55.2 6.4 26 18-43 33-58 (214)
287 2elf_A Protein translation elo 98.4 6E-07 2E-11 60.9 5.8 51 21-82 23-73 (370)
288 2gco_A H9, RHO-related GTP-bin 98.4 6.1E-07 2.1E-11 55.4 5.5 25 20-44 26-50 (201)
289 1vma_A Cell division protein F 98.4 1.6E-07 5.4E-12 62.2 2.9 34 15-48 100-133 (306)
290 3c5c_A RAS-like protein 12; GD 98.4 1.1E-06 3.8E-11 53.6 6.5 26 18-43 20-45 (187)
291 3q3j_B RHO-related GTP-binding 98.4 9.9E-07 3.4E-11 55.1 6.4 59 18-80 26-86 (214)
292 1ewq_A DNA mismatch repair pro 98.4 1.5E-07 5E-12 69.1 2.8 30 19-48 576-606 (765)
293 2x2e_A Dynamin-1; nitration, h 98.4 1.8E-06 6E-11 58.0 7.8 25 20-44 32-56 (353)
294 3ihw_A Centg3; RAS, centaurin, 98.4 1.5E-06 5.1E-11 53.0 6.8 62 15-81 16-79 (184)
295 2hup_A RAS-related protein RAB 98.4 5.2E-07 1.8E-11 55.8 4.7 60 19-81 29-90 (201)
296 2j0v_A RAC-like GTP-binding pr 98.4 1.8E-06 6.1E-11 53.5 7.1 62 18-82 8-70 (212)
297 1n0w_A DNA repair protein RAD5 98.4 2.2E-07 7.4E-12 58.8 2.9 26 16-41 21-46 (243)
298 3q5d_A Atlastin-1; G protein, 98.4 7.1E-07 2.4E-11 61.9 5.7 25 18-42 66-90 (447)
299 3gj0_A GTP-binding nuclear pro 98.3 1.9E-07 6.4E-12 58.4 2.5 62 18-81 14-76 (221)
300 3j2k_7 ERF3, eukaryotic polype 98.3 1.7E-06 5.8E-11 59.8 7.4 28 15-42 13-40 (439)
301 2iwr_A Centaurin gamma 1; ANK 98.3 1.2E-06 4.2E-11 52.7 6.0 26 18-43 6-31 (178)
302 3t1o_A Gliding protein MGLA; G 98.3 1.5E-06 5.2E-11 52.8 6.4 27 19-45 14-40 (198)
303 2atx_A Small GTP binding prote 98.3 1.2E-06 4.1E-11 53.5 6.0 60 19-82 18-79 (194)
304 3tr5_A RF-3, peptide chain rel 98.3 2.7E-07 9.4E-12 65.2 3.5 64 18-82 12-95 (528)
305 3o47_A ADP-ribosylation factor 98.3 1.3E-06 4.4E-11 58.3 6.5 58 19-82 165-222 (329)
306 1gwn_A RHO-related GTP-binding 98.3 8.4E-07 2.9E-11 55.2 5.3 58 19-80 28-87 (205)
307 2if2_A Dephospho-COA kinase; a 98.3 2.3E-07 7.8E-12 57.5 2.6 22 20-41 2-23 (204)
308 2fu5_C RAS-related protein RAB 98.3 3.9E-07 1.3E-11 55.1 3.6 59 19-80 8-68 (183)
309 3thx_A DNA mismatch repair pro 98.3 3.8E-07 1.3E-11 68.1 4.1 24 16-39 659-682 (934)
310 2h5e_A Peptide chain release f 98.3 1.3E-06 4.3E-11 61.8 6.4 64 18-82 12-95 (529)
311 2cvh_A DNA repair and recombin 98.3 3.1E-07 1E-11 57.2 3.0 27 15-41 16-42 (220)
312 3p26_A Elongation factor 1 alp 98.3 8.7E-07 3E-11 61.9 5.6 25 18-42 32-56 (483)
313 3bwd_D RAC-like GTP-binding pr 98.3 6.5E-07 2.2E-11 53.9 4.3 26 18-43 7-32 (182)
314 2qpt_A EH domain-containing pr 98.3 9.5E-07 3.2E-11 62.7 5.7 27 18-44 64-90 (550)
315 2pez_A Bifunctional 3'-phospho 98.3 4.8E-07 1.6E-11 55.0 3.7 27 17-43 3-29 (179)
316 1in4_A RUVB, holliday junction 98.3 1.6E-07 5.6E-12 62.6 1.7 24 20-43 52-75 (334)
317 1pzn_A RAD51, DNA repair and r 98.3 2.8E-07 9.5E-12 62.0 2.8 29 15-43 127-155 (349)
318 1dar_A EF-G, elongation factor 98.3 2.8E-06 9.7E-11 61.7 8.2 64 18-82 11-90 (691)
319 1svm_A Large T antigen; AAA+ f 98.3 3.2E-07 1.1E-11 62.4 3.0 29 15-43 165-193 (377)
320 2xex_A Elongation factor G; GT 98.3 2E-06 6.7E-11 62.6 7.3 65 17-82 8-88 (693)
321 2o5v_A DNA replication and rep 98.3 3.2E-07 1.1E-11 62.0 3.0 27 14-41 22-48 (359)
322 2j69_A Bacterial dynamin-like 98.3 2.2E-06 7.6E-11 62.3 7.5 28 18-45 68-95 (695)
323 1odf_A YGR205W, hypothetical 3 98.3 4.4E-07 1.5E-11 59.7 3.5 30 16-45 28-57 (290)
324 1nlf_A Regulatory protein REPA 98.3 3.2E-07 1.1E-11 59.6 2.7 29 15-43 26-54 (279)
325 3lvq_E ARF-GAP with SH3 domain 98.3 1.6E-06 5.4E-11 60.5 6.4 58 18-81 321-378 (497)
326 3thx_B DNA mismatch repair pro 98.3 2.9E-07 9.9E-12 68.6 2.5 27 15-41 669-695 (918)
327 2p67_A LAO/AO transport system 98.3 2.5E-07 8.4E-12 62.0 2.0 29 16-44 53-81 (341)
328 3l0i_B RAS-related protein RAB 98.3 8.8E-08 3E-12 59.0 -0.4 60 19-81 33-94 (199)
329 1ixz_A ATP-dependent metallopr 98.3 5.7E-07 1.9E-11 57.5 3.3 23 22-44 52-74 (254)
330 1e69_A Chromosome segregation 98.3 4.5E-07 1.5E-11 60.2 3.0 26 17-43 23-48 (322)
331 2yvu_A Probable adenylyl-sulfa 98.3 9.9E-07 3.4E-11 53.9 4.2 31 14-44 8-38 (186)
332 3izq_1 HBS1P, elongation facto 98.3 1.5E-06 5.1E-11 62.4 5.6 27 17-43 165-191 (611)
333 2g3y_A GTP-binding protein GEM 98.2 2.6E-06 8.9E-11 53.5 6.0 25 19-43 37-61 (211)
334 2o8b_B DNA mismatch repair pro 98.2 3.2E-07 1.1E-11 69.1 2.0 26 19-45 789-814 (1022)
335 3qks_A DNA double-strand break 98.2 7.2E-07 2.5E-11 55.7 3.3 21 20-40 24-44 (203)
336 2c78_A Elongation factor TU-A; 98.2 8.5E-07 2.9E-11 60.6 3.9 26 17-42 9-34 (405)
337 3qkt_A DNA double-strand break 98.2 7.9E-07 2.7E-11 59.4 3.7 21 20-40 24-44 (339)
338 3t61_A Gluconokinase; PSI-biol 98.2 7E-07 2.4E-11 55.3 3.2 24 19-42 18-41 (202)
339 1iy2_A ATP-dependent metallopr 98.2 7.5E-07 2.6E-11 57.8 3.4 23 22-44 76-98 (278)
340 3cm0_A Adenylate kinase; ATP-b 98.2 8.9E-07 3E-11 53.9 3.5 23 18-40 3-25 (186)
341 1zu4_A FTSY; GTPase, signal re 98.2 6.4E-07 2.2E-11 59.7 3.0 36 13-48 99-134 (320)
342 3nwj_A ATSK2; P loop, shikimat 98.2 7.3E-07 2.5E-11 57.5 3.0 23 19-41 48-70 (250)
343 1d2e_A Elongation factor TU (E 98.2 1.9E-06 6.4E-11 58.8 4.9 24 19-42 3-26 (397)
344 1np6_A Molybdopterin-guanine d 98.2 1.1E-06 3.9E-11 53.7 3.3 25 20-44 7-31 (174)
345 2cjw_A GTP-binding protein GEM 98.2 1.5E-06 5E-11 53.5 3.8 23 20-42 7-29 (192)
346 1jny_A EF-1-alpha, elongation 98.2 9.5E-07 3.2E-11 60.9 3.2 25 18-42 5-29 (435)
347 1wb1_A Translation elongation 98.2 3.3E-06 1.1E-10 59.1 5.9 62 18-80 18-84 (482)
348 3kb2_A SPBC2 prophage-derived 98.2 1.2E-06 4.2E-11 52.5 3.2 23 20-42 2-24 (173)
349 1tf7_A KAIC; homohexamer, hexa 98.2 5.8E-07 2E-11 63.3 2.0 32 15-46 277-308 (525)
350 2rdo_7 EF-G, elongation factor 98.2 1.3E-05 4.4E-10 58.4 9.0 24 18-41 9-32 (704)
351 1qhx_A CPT, protein (chloramph 98.2 1.6E-06 5.3E-11 52.5 3.6 24 19-42 3-26 (178)
352 1kk1_A EIF2gamma; initiation o 98.2 5.3E-06 1.8E-10 56.8 6.5 26 18-43 9-34 (410)
353 1ex7_A Guanylate kinase; subst 98.2 1.3E-06 4.3E-11 54.1 3.1 23 21-43 3-25 (186)
354 3sjy_A Translation initiation 98.1 6.6E-06 2.2E-10 56.2 6.8 26 18-43 7-32 (403)
355 1y63_A LMAJ004144AAA protein; 98.1 2.2E-06 7.5E-11 52.5 3.9 27 16-42 7-33 (184)
356 1s0u_A EIF-2-gamma, translatio 98.1 1.1E-05 3.6E-10 55.3 7.6 26 18-43 7-32 (408)
357 1ls1_A Signal recognition part 98.1 9E-07 3.1E-11 58.3 2.0 31 18-48 97-127 (295)
358 1kht_A Adenylate kinase; phosp 98.1 2E-06 6.9E-11 52.3 3.4 23 19-41 3-25 (192)
359 1zun_B Sulfate adenylate trans 98.1 6.4E-06 2.2E-10 56.8 6.2 25 18-42 23-47 (434)
360 3izy_P Translation initiation 98.1 4.1E-07 1.4E-11 64.4 0.2 62 19-82 4-65 (537)
361 2rhm_A Putative kinase; P-loop 98.1 2.7E-06 9.3E-11 51.9 3.9 24 18-41 4-27 (193)
362 3lw7_A Adenylate kinase relate 98.1 2E-06 7E-11 51.4 3.2 20 20-39 2-21 (179)
363 1m7g_A Adenylylsulfate kinase; 98.1 2.6E-06 8.9E-11 53.1 3.7 29 16-44 22-50 (211)
364 1gvn_B Zeta; postsegregational 98.1 2.8E-06 9.5E-11 55.7 3.9 27 15-41 29-55 (287)
365 3lda_A DNA repair protein RAD5 98.1 2.9E-06 1E-10 58.1 4.1 31 15-45 174-206 (400)
366 2ygr_A Uvrabc system protein A 98.1 1E-06 3.5E-11 66.0 1.7 28 13-40 662-689 (993)
367 1q3t_A Cytidylate kinase; nucl 98.1 3E-06 1E-10 53.8 3.7 26 16-41 13-38 (236)
368 1ly1_A Polynucleotide kinase; 98.1 3E-06 1E-10 51.1 3.5 22 20-41 3-24 (181)
369 4eaq_A DTMP kinase, thymidylat 98.1 3.8E-06 1.3E-10 53.3 4.1 30 16-45 23-52 (229)
370 3cb4_D GTP-binding protein LEP 98.1 5.2E-06 1.8E-10 59.5 5.1 64 19-82 4-84 (599)
371 2ze6_A Isopentenyl transferase 98.1 2.8E-06 9.7E-11 54.6 3.4 23 20-42 2-24 (253)
372 2wkq_A NPH1-1, RAS-related C3 98.1 1.8E-05 6.3E-10 51.9 7.4 25 19-43 155-179 (332)
373 2jaq_A Deoxyguanosine kinase; 98.1 2.9E-06 9.8E-11 52.2 3.3 22 21-42 2-23 (205)
374 3zvr_A Dynamin-1; hydrolase, D 98.0 1E-05 3.4E-10 59.5 6.5 25 20-44 52-76 (772)
375 1vht_A Dephospho-COA kinase; s 98.0 3.5E-06 1.2E-10 52.7 3.6 23 19-41 4-26 (218)
376 1uf9_A TT1252 protein; P-loop, 98.0 3.8E-06 1.3E-10 51.7 3.7 25 18-42 7-31 (203)
377 2wwf_A Thymidilate kinase, put 98.0 4.2E-06 1.4E-10 51.9 3.9 26 17-42 8-33 (212)
378 3th5_A RAS-related C3 botulinu 97.3 6.1E-07 2.1E-11 55.4 0.0 27 17-43 28-54 (204)
379 2p5t_B PEZT; postsegregational 98.0 2.5E-06 8.5E-11 54.8 2.9 29 15-43 28-56 (253)
380 2ywe_A GTP-binding protein LEP 98.0 9.3E-06 3.2E-10 58.2 6.0 23 19-41 6-28 (600)
381 2v54_A DTMP kinase, thymidylat 98.0 3.8E-06 1.3E-10 51.8 3.6 26 18-43 3-28 (204)
382 3trf_A Shikimate kinase, SK; a 98.0 3.6E-06 1.2E-10 51.2 3.4 23 19-41 5-27 (185)
383 3mca_A HBS1, elongation factor 98.0 2.2E-06 7.6E-11 61.3 2.7 24 18-41 176-199 (592)
384 4dkx_A RAS-related protein RAB 98.0 1.2E-05 4E-10 50.7 5.8 22 20-41 14-35 (216)
385 2plr_A DTMP kinase, probable t 98.0 4.2E-06 1.4E-10 51.7 3.7 25 18-42 3-27 (213)
386 1n0u_A EF-2, elongation factor 98.0 9.3E-06 3.2E-10 60.2 5.9 24 19-42 19-42 (842)
387 1aky_A Adenylate kinase; ATP:A 98.0 4.1E-06 1.4E-10 52.5 3.6 25 17-41 2-26 (220)
388 1zo1_I IF2, translation initia 98.0 1.2E-06 4.2E-11 61.5 1.2 61 19-82 4-64 (501)
389 2c95_A Adenylate kinase 1; tra 98.0 4.5E-06 1.5E-10 51.1 3.5 24 18-41 8-31 (196)
390 1via_A Shikimate kinase; struc 98.0 3.3E-06 1.1E-10 51.1 2.9 22 21-42 6-27 (175)
391 3dpu_A RAB family protein; roc 98.0 1.6E-05 5.5E-10 56.1 6.7 26 18-43 40-65 (535)
392 3iij_A Coilin-interacting nucl 98.0 5.1E-06 1.7E-10 50.4 3.6 23 18-40 10-32 (180)
393 2r6f_A Excinuclease ABC subuni 98.0 1.1E-06 3.8E-11 65.7 0.8 28 13-40 644-671 (972)
394 1tev_A UMP-CMP kinase; ploop, 98.0 5.2E-06 1.8E-10 50.6 3.5 23 19-41 3-25 (196)
395 1sxj_E Activator 1 40 kDa subu 98.0 2.6E-06 9E-11 56.7 2.3 28 21-48 38-66 (354)
396 3m6a_A ATP-dependent protease 98.0 2.3E-06 7.8E-11 60.6 2.0 31 18-48 107-137 (543)
397 1nks_A Adenylate kinase; therm 98.0 4.8E-06 1.6E-10 50.7 3.3 24 20-43 2-25 (194)
398 1ukz_A Uridylate kinase; trans 98.0 8.3E-06 2.8E-10 50.3 4.4 27 15-41 11-37 (203)
399 1nn5_A Similar to deoxythymidy 98.0 5.5E-06 1.9E-10 51.4 3.5 25 17-41 7-31 (215)
400 2vf7_A UVRA2, excinuclease ABC 98.0 8.3E-07 2.8E-11 65.7 -0.3 31 13-43 517-548 (842)
401 2dr3_A UPF0273 protein PH0284; 98.0 5.2E-06 1.8E-10 52.4 3.4 26 15-40 19-44 (247)
402 3r20_A Cytidylate kinase; stru 98.0 5.4E-06 1.9E-10 53.0 3.4 22 19-40 9-30 (233)
403 1gtv_A TMK, thymidylate kinase 98.0 1.6E-06 5.4E-11 53.9 0.9 24 21-44 2-25 (214)
404 1xjc_A MOBB protein homolog; s 98.0 6E-06 2.1E-10 50.3 3.4 25 20-44 5-29 (169)
405 1f60_A Elongation factor EEF1A 97.9 2.7E-06 9.1E-11 59.1 1.9 24 19-42 7-30 (458)
406 1r5b_A Eukaryotic peptide chai 97.9 2.9E-06 1E-10 59.0 2.0 25 17-41 41-65 (467)
407 3j25_A Tetracycline resistance 97.9 9.1E-06 3.1E-10 58.6 4.4 62 20-82 3-80 (638)
408 4fn5_A EF-G 1, elongation fact 97.9 5E-05 1.7E-09 55.4 8.3 66 17-82 11-98 (709)
409 2cdn_A Adenylate kinase; phosp 97.9 9.5E-06 3.2E-10 50.1 4.0 27 15-41 16-42 (201)
410 3k1j_A LON protease, ATP-depen 97.9 5.1E-06 1.8E-10 59.4 3.1 30 18-47 59-88 (604)
411 2wsm_A Hydrogenase expression/ 97.9 7.1E-06 2.4E-10 51.1 3.3 24 19-42 30-53 (221)
412 3auy_A DNA double-strand break 97.9 6.3E-06 2.2E-10 55.7 3.2 21 20-40 26-46 (371)
413 1zd8_A GTP:AMP phosphotransfer 97.9 7.8E-06 2.7E-10 51.5 3.3 24 18-41 6-29 (227)
414 2bwj_A Adenylate kinase 5; pho 97.9 8.4E-06 2.9E-10 49.9 3.3 24 19-42 12-35 (199)
415 1zak_A Adenylate kinase; ATP:A 97.9 7.7E-06 2.6E-10 51.3 3.1 24 19-42 5-28 (222)
416 2vli_A Antibiotic resistance p 97.9 5.9E-06 2E-10 50.0 2.4 24 18-41 4-27 (183)
417 3fb4_A Adenylate kinase; psych 97.9 8.9E-06 3E-10 50.6 3.2 21 21-41 2-22 (216)
418 1qf9_A UMP/CMP kinase, protein 97.9 1.5E-05 5.1E-10 48.5 4.1 23 19-41 6-28 (194)
419 1lv7_A FTSH; alpha/beta domain 97.9 9.2E-06 3.1E-10 52.0 3.1 24 20-43 46-69 (257)
420 3pih_A Uvrabc system protein A 97.9 1.1E-05 3.7E-10 60.3 3.9 24 13-36 604-627 (916)
421 3tlx_A Adenylate kinase 2; str 97.8 1.4E-05 4.6E-10 51.1 3.8 24 18-41 28-51 (243)
422 3dl0_A Adenylate kinase; phosp 97.8 1.1E-05 3.7E-10 50.3 3.2 21 21-41 2-22 (216)
423 2z0h_A DTMP kinase, thymidylat 97.8 1.2E-05 4E-10 49.2 3.2 23 21-43 2-24 (197)
424 2hf9_A Probable hydrogenase ni 97.8 1.4E-05 4.7E-10 50.0 3.6 24 19-42 38-61 (226)
425 3a4m_A L-seryl-tRNA(SEC) kinas 97.8 1.4E-05 4.8E-10 51.5 3.7 23 19-41 4-26 (260)
426 2iyv_A Shikimate kinase, SK; t 97.8 1E-05 3.5E-10 49.1 2.8 22 20-41 3-24 (184)
427 1e6c_A Shikimate kinase; phosp 97.8 1.1E-05 3.8E-10 48.4 2.9 22 20-41 3-24 (173)
428 2pbr_A DTMP kinase, thymidylat 97.8 1.3E-05 4.6E-10 48.8 3.3 21 21-41 2-22 (195)
429 2pt5_A Shikimate kinase, SK; a 97.8 1.4E-05 4.9E-10 47.7 3.3 21 21-41 2-22 (168)
430 1g7s_A Translation initiation 97.8 1.5E-05 5.1E-10 57.1 3.6 24 20-43 6-29 (594)
431 1ypw_A Transitional endoplasmi 97.8 1.4E-05 4.9E-10 59.0 3.6 29 16-44 235-263 (806)
432 2f6r_A COA synthase, bifunctio 97.8 3.5E-05 1.2E-09 50.2 5.1 23 18-40 74-96 (281)
433 3ake_A Cytidylate kinase; CMP 97.8 1.6E-05 5.5E-10 49.0 3.2 22 21-42 4-25 (208)
434 1j8m_F SRP54, signal recogniti 97.8 6E-06 2.1E-10 54.4 1.3 27 19-45 98-124 (297)
435 1zuh_A Shikimate kinase; alpha 97.8 1.8E-05 6.3E-10 47.4 3.3 23 19-41 7-29 (168)
436 2ffh_A Protein (FFH); SRP54, s 97.8 9.4E-06 3.2E-10 56.0 2.2 30 18-47 97-126 (425)
437 3kl4_A SRP54, signal recogniti 97.8 2.8E-05 9.5E-10 53.8 4.5 27 18-44 96-122 (433)
438 3be4_A Adenylate kinase; malar 97.8 1.7E-05 5.9E-10 49.6 3.1 23 19-41 5-27 (217)
439 1uj2_A Uridine-cytidine kinase 97.8 2.2E-05 7.6E-10 50.2 3.6 24 18-41 21-44 (252)
440 3cf0_A Transitional endoplasmi 97.7 2.1E-05 7.3E-10 51.6 3.6 27 17-43 47-73 (301)
441 3umf_A Adenylate kinase; rossm 97.7 3.2E-05 1.1E-09 48.9 4.2 28 15-42 25-52 (217)
442 3ice_A Transcription terminati 97.7 2.4E-05 8.1E-10 53.6 3.8 31 13-43 168-198 (422)
443 2xb4_A Adenylate kinase; ATP-b 97.7 2.1E-05 7.1E-10 49.5 3.3 21 21-41 2-22 (223)
444 2dhr_A FTSH; AAA+ protein, hex 97.7 2.1E-05 7.1E-10 55.3 3.6 23 22-44 67-89 (499)
445 4ad8_A DNA repair protein RECN 97.7 4E-06 1.4E-10 59.0 -0.1 27 15-42 57-83 (517)
446 4ag6_A VIRB4 ATPase, type IV s 97.7 1.8E-05 6.3E-10 53.6 3.1 28 18-45 34-61 (392)
447 1e4v_A Adenylate kinase; trans 97.7 2E-05 7E-10 49.1 3.1 21 21-41 2-22 (214)
448 3p32_A Probable GTPase RV1496/ 97.7 2.8E-05 9.6E-10 52.3 4.0 25 18-42 78-102 (355)
449 3bos_A Putative DNA replicatio 97.7 2.3E-05 8E-10 49.0 3.4 27 18-44 51-77 (242)
450 1a7j_A Phosphoribulokinase; tr 97.7 1.2E-05 4E-10 52.9 2.0 25 18-42 4-28 (290)
451 3avx_A Elongation factor TS, e 97.7 5.6E-05 1.9E-09 58.0 5.8 26 17-42 294-319 (1289)
452 1ak2_A Adenylate kinase isoenz 97.7 2.8E-05 9.7E-10 49.1 3.7 24 18-41 15-38 (233)
453 2w58_A DNAI, primosome compone 97.7 2.6E-05 8.7E-10 48.1 3.4 25 20-44 55-79 (202)
454 3a8t_A Adenylate isopentenyltr 97.7 3.5E-05 1.2E-09 51.7 4.2 26 19-44 40-65 (339)
455 1jbk_A CLPB protein; beta barr 97.7 3.1E-05 1.1E-09 46.5 3.6 25 19-43 43-67 (195)
456 2grj_A Dephospho-COA kinase; T 97.7 2.7E-05 9.4E-10 48.2 3.2 25 18-42 11-35 (192)
457 1sxj_C Activator 1 40 kDa subu 97.7 1.7E-05 5.7E-10 52.8 2.4 23 22-44 49-71 (340)
458 1ltq_A Polynucleotide kinase; 97.7 2.9E-05 1E-09 50.6 3.4 22 20-41 3-24 (301)
459 3hr8_A Protein RECA; alpha and 97.7 2.9E-05 1E-09 52.4 3.4 29 16-44 58-86 (356)
460 4fcw_A Chaperone protein CLPB; 97.7 3.9E-05 1.3E-09 50.1 4.0 27 18-44 46-72 (311)
461 3b9p_A CG5977-PA, isoform A; A 97.7 3.4E-05 1.2E-09 50.2 3.5 25 19-43 54-78 (297)
462 3zvl_A Bifunctional polynucleo 97.7 4.7E-05 1.6E-09 52.3 4.4 26 17-42 256-281 (416)
463 2qmh_A HPR kinase/phosphorylas 97.7 4.4E-05 1.5E-09 47.8 3.7 26 18-43 33-58 (205)
464 3lv8_A DTMP kinase, thymidylat 97.6 3.6E-05 1.2E-09 49.2 3.4 35 10-44 18-52 (236)
465 4ido_A Atlastin-1; GTPase, GTP 97.6 0.00014 4.7E-09 50.6 6.4 25 17-41 65-89 (457)
466 2ga8_A Hypothetical 39.9 kDa p 97.6 5.6E-05 1.9E-09 51.1 4.3 24 20-43 25-48 (359)
467 2qby_A CDC6 homolog 1, cell di 97.6 3.3E-05 1.1E-09 51.4 3.2 27 17-43 43-69 (386)
468 3c5h_A Glucocorticoid receptor 97.6 7.2E-05 2.5E-09 48.0 4.6 24 18-41 18-50 (255)
469 3llm_A ATP-dependent RNA helic 97.6 4.1E-05 1.4E-09 48.4 3.4 23 18-40 75-97 (235)
470 3exa_A TRNA delta(2)-isopenten 97.6 4.7E-05 1.6E-09 50.7 3.6 26 19-44 3-28 (322)
471 3r7w_B Gtpase2, GTP-binding pr 97.6 0.00012 4.3E-09 48.9 5.7 59 21-82 1-59 (331)
472 3d3q_A TRNA delta(2)-isopenten 97.6 4.1E-05 1.4E-09 51.4 3.4 24 20-43 8-31 (340)
473 3sr0_A Adenylate kinase; phosp 97.6 4.6E-05 1.6E-09 47.7 3.3 22 21-42 2-23 (206)
474 1fnn_A CDC6P, cell division co 97.6 4.9E-05 1.7E-09 50.9 3.6 24 21-44 46-69 (389)
475 3crm_A TRNA delta(2)-isopenten 97.6 5.2E-05 1.8E-09 50.6 3.5 24 20-43 6-29 (323)
476 4edh_A DTMP kinase, thymidylat 97.6 6E-05 2.1E-09 47.4 3.6 26 18-43 5-30 (213)
477 2p65_A Hypothetical protein PF 97.6 4E-05 1.4E-09 46.0 2.7 25 19-43 43-67 (187)
478 3foz_A TRNA delta(2)-isopenten 97.6 7.3E-05 2.5E-09 49.7 3.9 25 19-43 10-34 (316)
479 2ocp_A DGK, deoxyguanosine kin 97.6 6.4E-05 2.2E-09 47.7 3.5 25 19-43 2-26 (241)
480 1sky_E F1-ATPase, F1-ATP synth 97.5 5.7E-05 2E-09 52.7 3.5 30 15-44 147-176 (473)
481 3h4m_A Proteasome-activating n 97.5 6.6E-05 2.3E-09 48.5 3.6 26 18-43 50-75 (285)
482 3v9p_A DTMP kinase, thymidylat 97.5 5.2E-05 1.8E-09 48.2 2.8 28 17-44 23-50 (227)
483 2j37_W Signal recognition part 97.5 0.00011 3.9E-09 51.7 4.6 24 17-40 99-122 (504)
484 1l8q_A Chromosomal replication 97.5 5.6E-05 1.9E-09 49.9 2.9 25 19-43 37-61 (324)
485 2h92_A Cytidylate kinase; ross 97.5 6.3E-05 2.2E-09 46.8 3.0 23 20-42 4-26 (219)
486 2qz4_A Paraplegin; AAA+, SPG7, 97.5 9.1E-05 3.1E-09 47.1 3.7 26 18-43 38-63 (262)
487 3dm5_A SRP54, signal recogniti 97.5 0.00013 4.3E-09 50.7 4.6 25 18-42 99-123 (443)
488 2zr9_A Protein RECA, recombina 97.5 7.2E-05 2.5E-09 50.3 3.3 26 16-41 58-83 (349)
489 1p5z_B DCK, deoxycytidine kina 97.5 4.7E-05 1.6E-09 48.9 2.3 27 17-43 22-48 (263)
490 4tmk_A Protein (thymidylate ki 97.5 8.5E-05 2.9E-09 46.7 3.4 27 18-44 2-28 (213)
491 2v3c_C SRP54, signal recogniti 97.5 7.6E-05 2.6E-09 51.6 3.4 25 19-43 99-123 (432)
492 2ce7_A Cell division protein F 97.5 5.4E-05 1.9E-09 53.0 2.5 24 20-43 50-73 (476)
493 3ld9_A DTMP kinase, thymidylat 97.5 0.00011 3.9E-09 46.5 3.8 29 16-44 18-46 (223)
494 3eph_A TRNA isopentenyltransfe 97.5 9.2E-05 3.2E-09 50.8 3.5 23 20-42 3-25 (409)
495 1njg_A DNA polymerase III subu 97.4 9.2E-05 3.1E-09 45.9 3.2 24 20-43 46-69 (250)
496 3tmk_A Thymidylate kinase; pho 97.4 0.00011 3.8E-09 46.3 3.5 27 18-44 4-30 (216)
497 3n70_A Transport activator; si 97.4 0.00011 3.7E-09 43.2 3.3 24 20-43 25-48 (145)
498 3syl_A Protein CBBX; photosynt 97.4 0.00013 4.4E-09 47.6 3.8 27 17-43 65-91 (309)
499 1ko7_A HPR kinase/phosphatase; 97.4 0.00012 4E-09 48.7 3.4 24 18-41 143-166 (314)
500 3t15_A Ribulose bisphosphate c 97.4 0.00022 7.6E-09 46.7 4.5 25 19-43 36-60 (293)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.61 E-value=4e-16 Score=105.28 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=59.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+...+...... ......++.+++++|.+.+++. +++.
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~-----ltV~ 98 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH-----LTVY 98 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT-----SCHH
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC-----CCHH
Confidence 344567899999999999999999999999999998655444332110 1111124679999999999877 6777
Q ss_pred HHHHHhh
Q 038901 92 EIVKCLG 98 (107)
Q Consensus 92 ~~~~~~~ 98 (107)
+++.+..
T Consensus 99 eni~~~l 105 (359)
T 3fvq_A 99 RNIAYGL 105 (359)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 7776643
No 2
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=1.2e-16 Score=102.69 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+..........+.+..+++++|.+.+++. .++.++
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----ltv~en 101 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE-----LTVYEN 101 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT-----SBHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC-----CcHHHH
Confidence 344578999999999999999999999999999885543332211111001112458999999988776 677777
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 102 l~~~ 105 (240)
T 1ji0_A 102 LMMG 105 (240)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 7654
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.60 E-value=4.1e-16 Score=105.87 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+...+....... ..++.+++++|.+.+++. +++.+
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~---~~~r~ig~VfQ~~~l~p~-----ltV~e 94 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---PAERGVGMVFQSYALYPH-----LSVAE 94 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSCEEEECTTCCCCTT-----SCHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC---HHHCCEEEEecCCcCCCC-----CCHHH
Confidence 3445678999999999999999999999999999886544333221111 123569999999999887 67777
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 95 ni~~~ 99 (381)
T 3rlf_A 95 NMSFG 99 (381)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 76554
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.59 E-value=1.2e-16 Score=102.53 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=55.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFV 89 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~~ 89 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+...+.......... ..+..+++++|.|.+++. .+
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~t 99 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL-----LT 99 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT-----SC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC-----Cc
Confidence 3455678999999999999999999999999999885443332211111000 012358999999988876 56
Q ss_pred HHHHHHH
Q 038901 90 GKEIVKC 96 (107)
Q Consensus 90 ~~~~~~~ 96 (107)
+.+++.+
T Consensus 100 v~enl~~ 106 (235)
T 3tif_A 100 ALENVEL 106 (235)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.58 E-value=9e-16 Score=103.62 Aligned_cols=78 Identities=18% Similarity=0.057 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+........... ..++.+++++|.+.+++. +++.+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e 94 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP---PKYREVGMVFQNYALYPH-----MTVFE 94 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGTTEEEECSSCCCCTT-----SCHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC---hhhCcEEEEecCcccCCC-----CCHHH
Confidence 3445678999999999999999999999999999886544332221111 124679999999998876 67777
Q ss_pred HHHHhh
Q 038901 93 IVKCLG 98 (107)
Q Consensus 93 ~~~~~~ 98 (107)
++.+..
T Consensus 95 ni~~~~ 100 (359)
T 2yyz_A 95 NIAFPL 100 (359)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 777643
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.58 E-value=4.5e-16 Score=105.16 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=58.2
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchH
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEF 88 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~ 88 (107)
.......+|++++|+||||||||||+++|+|+..+++|.+...+.......... ..++.+++++|.+.+++. .
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~-----~ 120 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS-----R 120 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT-----S
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC-----C
Confidence 344556788999999999999999999999999999886544333221111100 013579999999998876 5
Q ss_pred HHHHHHHHh
Q 038901 89 VGKEIVKCL 97 (107)
Q Consensus 89 ~~~~~~~~~ 97 (107)
++.+++.+.
T Consensus 121 TV~env~~~ 129 (366)
T 3tui_C 121 TVFGNVALP 129 (366)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666666554
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.58 E-value=1.7e-15 Score=102.76 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-e--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-T--TVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
....+|++++|+||||||||||+++|+|+..+++|.+........... . ....++.+++++|.+.+++. +++
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~-----ltv 98 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH-----MTV 98 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT-----SCH
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC-----CCH
Confidence 344578999999999999999999999999999986554443322100 0 11124679999999998876 677
Q ss_pred HHHHHHh
Q 038901 91 KEIVKCL 97 (107)
Q Consensus 91 ~~~~~~~ 97 (107)
.+++.+.
T Consensus 99 ~eni~~~ 105 (372)
T 1g29_1 99 YDNIAFP 105 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=4e-16 Score=101.16 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..+++|.+......... ....+ ++.+++++|.|.+++. .++.++
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~-~~~i~~v~q~~~l~~~-----ltv~en 108 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV-RKLISYLPEEAGAYRN-----MQGIEY 108 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHH-HTTEEEECTTCCCCTT-----SBHHHH
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHH-hhcEEEEcCCCCCCCC-----CcHHHH
Confidence 3456789999999999999999999999999998854433221111 00111 3568999999988765 566666
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 109 l~~~ 112 (256)
T 1vpl_A 109 LRFV 112 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 9
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.57 E-value=9.3e-16 Score=97.14 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=54.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..++.|.+........ . .+..+++++|.|.++.. .++.++
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~-~~~~i~~v~q~~~~~~~-----~tv~en 98 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K-VKGKIFFLPEEIIVPRK-----ISVEDY 98 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G-GGGGEEEECSSCCCCTT-----SBHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h-hcCcEEEEeCCCcCCCC-----CCHHHH
Confidence 344578999999999999999999999999998885443332111 1 24678999999988765 566776
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 99 l~~~ 102 (214)
T 1sgw_A 99 LKAV 102 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.57 E-value=1e-15 Score=103.47 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+........... ..++.+++++|.+.+++. +++.+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e 94 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP---PKDRNVGLVFQNWALYPH-----MTVYK 94 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGTTEEEECTTCCCCTT-----SCHHH
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC---HhHCcEEEEecCcccCCC-----CCHHH
Confidence 3445678999999999999999999999999999886544332221111 123678999999998876 66777
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 95 ni~~~ 99 (362)
T 2it1_A 95 NIAFP 99 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 11
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.57 E-value=1.2e-15 Score=102.90 Aligned_cols=81 Identities=15% Similarity=0.046 Sum_probs=58.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+............ ....++.+++++|.+.+++. +++
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~-----ltv 99 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN-----LTA 99 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT-----SCH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC-----CCH
Confidence 34456789999999999999999999999999998865444333221000 11124578999999998876 677
Q ss_pred HHHHHHhh
Q 038901 91 KEIVKCLG 98 (107)
Q Consensus 91 ~~~~~~~~ 98 (107)
.+++.+..
T Consensus 100 ~eni~~~~ 107 (353)
T 1oxx_K 100 FENIAFPL 107 (353)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 77776643
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.56 E-value=4.2e-16 Score=101.53 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=54.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+..........+ .+..++++|.+.++.. .++.++
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~e~ 105 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL-ARTRAVMRQYSELAFP-----FSVSEV 105 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH-HHHEEEECSCCCCCSC-----CBHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH-hheEEEEecCCccCCC-----CCHHHH
Confidence 3455789999999999999999999999999998855433322111111111 2457899999887655 566666
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 106 l~~~ 109 (266)
T 4g1u_C 106 IQMG 109 (266)
T ss_dssp HHGG
T ss_pred HHhh
Confidence 6554
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.56 E-value=1e-15 Score=103.22 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..+++|.+.......... ...++.+++++|.+.+++. +++.++
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---~~~~r~ig~v~Q~~~l~~~-----ltv~en 107 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL---PPQKRNVGLVFQNYALFQH-----MTVYDN 107 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---CGGGSSEEEECGGGCCCTT-----SCHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC---ChhhCcEEEEecCcccCCC-----CCHHHH
Confidence 34557899999999999999999999999999988654333221111 1124678999999998876 667777
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 108 i~~~ 111 (355)
T 1z47_A 108 VSFG 111 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.56 E-value=1.1e-15 Score=103.61 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=50.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+........... ..++.+++++|.+.+++. +++.+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e 102 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP---PKDRNISMVFQSYAVWPH-----MTVYE 102 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGGTEEEEEC------C-----CCHHH
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC---hhhCcEEEEecCcccCCC-----CCHHH
Confidence 3445678999999999999999999999999999886543332211111 113568999999988876 56666
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 103 ni~~~ 107 (372)
T 1v43_A 103 NIAFP 107 (372)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66553
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.56 E-value=4.6e-16 Score=101.21 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=53.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-eeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~ 92 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+.... ........++.+++++|.+.+++. .++.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~tv~e 119 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH-----MTVLN 119 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT-----SCHHH
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC-----CCHHH
Confidence 345678999999999999999999999999999885543332211 000000012458999999988765 56666
Q ss_pred HHHH
Q 038901 93 IVKC 96 (107)
Q Consensus 93 ~~~~ 96 (107)
++.+
T Consensus 120 ~l~~ 123 (263)
T 2olj_A 120 NITL 123 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.55 E-value=1.5e-16 Score=103.11 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
......+|++++|+||||||||||+++|+|+..++.|.+...+............+..+++++|.+.+++. .++.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv~ 100 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE-----MTVL 100 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG-----SBHH
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC-----CcHH
Confidence 34455678999999999999999999999999999885543332211100000012358899999877654 5677
Q ss_pred HHHHHh
Q 038901 92 EIVKCL 97 (107)
Q Consensus 92 ~~~~~~ 97 (107)
+++.+.
T Consensus 101 enl~~~ 106 (257)
T 1g6h_A 101 ENLLIG 106 (257)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 776654
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.55 E-value=5.2e-16 Score=98.85 Aligned_cols=78 Identities=15% Similarity=0.011 Sum_probs=52.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~~~~~~~~~ 90 (107)
....+|++++|+||||||||||+++|+|+..++.|.+............. .+.+..+++++|.+.+++. .++
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv 99 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE-----LTA 99 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT-----SCH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC-----CCH
Confidence 34457899999999999999999999999999888544333221110000 0001458999999988765 455
Q ss_pred HHHHHH
Q 038901 91 KEIVKC 96 (107)
Q Consensus 91 ~~~~~~ 96 (107)
.+++.+
T Consensus 100 ~e~l~~ 105 (224)
T 2pcj_A 100 LENVIV 105 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.55 E-value=4.9e-15 Score=95.88 Aligned_cols=65 Identities=18% Similarity=0.028 Sum_probs=51.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..+++|.+. + ++.+++++|.|.++.. .++.++
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~-~~~i~~v~q~~~~~~~-----~tv~en 86 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------V-YQSIGFVPQFFSSPFA-----YSVLDI 86 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------E-CSCEEEECSCCCCSSC-----CBHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------E-eccEEEEcCCCccCCC-----CCHHHH
Confidence 34457899999999999999999999999998877432 2 4578899999988755 566777
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 87 l~~~ 90 (253)
T 2nq2_C 87 VLMG 90 (253)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 6654
No 19
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.54 E-value=9.2e-16 Score=98.72 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=48.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+.......... .++.+++++|.|.+++
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-WRSQIGFVSQDSAIMA 89 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC-CTTTCCEECCSSCCCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH-HHhhEEEEcCCCcccc
Confidence 445678999999999999999999999999999886544332211111111 2456889999987764
No 20
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.54 E-value=6.6e-16 Score=99.80 Aligned_cols=75 Identities=13% Similarity=-0.041 Sum_probs=52.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
...+|++++|+||||||||||+++|+|+..++ |.+...+..........+ ++.+++++|.+.++.. .++.+++
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~e~l 94 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKL-ALHRAYLSQQQTPPFA-----TPVWHYL 94 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHH-HHHEEEECSCCCCCTT-----CBHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHH-hceEEEECCCCccCCC-----CcHHHHH
Confidence 44578999999999999999999999999998 854433322111010011 3468999999987765 5666666
Q ss_pred HH
Q 038901 95 KC 96 (107)
Q Consensus 95 ~~ 96 (107)
.+
T Consensus 95 ~~ 96 (249)
T 2qi9_C 95 TL 96 (249)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.54 E-value=7.5e-16 Score=103.64 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=56.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..++.|.+........... ..++.+++++|.+.+++. +++.++
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~en 92 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAFVYQNYSLFPH-----MNVKKN 92 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEEECTTCCCCTT-----SCHHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc---hhhCcEEEEecCcccCCC-----CCHHHH
Confidence 345678999999999999999999999999999886543332211111 113468999999998877 677777
Q ss_pred HHHh
Q 038901 94 VKCL 97 (107)
Q Consensus 94 ~~~~ 97 (107)
+.+.
T Consensus 93 l~~~ 96 (348)
T 3d31_A 93 LEFG 96 (348)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.53 E-value=8.3e-16 Score=99.95 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee----------eee--EEeeCCcEEEEEeCCCCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE----------MKT--TVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~----------~~~--~~~~~~~~~~v~d~p~~~ 80 (107)
.....+|++++|+||||||||||+++|+|+..++.|.+...+..... ... ....++.+++++|.+.++
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 105 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 105 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccC
Confidence 34456789999999999999999999999999998865433322110 000 000124689999999887
Q ss_pred CCCCCchHHHHHHHHH
Q 038901 81 DLSAGSEFVGKEIVKC 96 (107)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (107)
+. .++.+++.+
T Consensus 106 ~~-----ltv~e~l~~ 116 (262)
T 1b0u_A 106 SH-----MTVLENVME 116 (262)
T ss_dssp TT-----SCHHHHHHH
T ss_pred CC-----CcHHHHHHh
Confidence 66 567777665
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.53 E-value=1e-15 Score=99.96 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+.......... .++.+++++|.|.+++
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY-LHTQVAAVGQEPLLFG 106 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH-HHHHEEEECSSCCCCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHH-HhccEEEEecCCcccc
Confidence 455678999999999999999999999999999886543332211111111 1346899999998764
No 24
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.53 E-value=7.4e-14 Score=89.17 Aligned_cols=88 Identities=40% Similarity=0.738 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~ 96 (107)
....+|+|+|++|+|||||+|.|++......+......+.........+ ....+.++||||+.+.........+++..+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999877655432223333333333343 567889999999987655555556677777
Q ss_pred hhccCCCCC
Q 038901 97 LGMAKDGIH 105 (107)
Q Consensus 97 ~~~~~~~~~ 105 (107)
+...+++++
T Consensus 106 ~~~~~~~~~ 114 (239)
T 3lxx_A 106 ILLTSPGPH 114 (239)
T ss_dssp HHHTTTCCS
T ss_pred HHhcCCCCc
Confidence 766665554
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.53 E-value=5.6e-16 Score=102.72 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
...+|++++|+||||||||||+++|+|++.+..|.+...+.......... .++.+++++|.|.++. .++.+++
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~-~r~~i~~v~Q~~~lf~------~Tv~eNi 148 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS-LRSHIGVVPQDTVLFN------DTIADNI 148 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHH-HHHTEEEECSSCCCCS------EEHHHHH
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHH-HhcceEEEecCCccCc------ccHHHHH
Confidence 45678999999999999999999999999999886544333222211111 1456999999998874 3555555
Q ss_pred HH
Q 038901 95 KC 96 (107)
Q Consensus 95 ~~ 96 (107)
.+
T Consensus 149 ~~ 150 (306)
T 3nh6_A 149 RY 150 (306)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.52 E-value=1.7e-15 Score=97.38 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=51.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+ ++++|+||||||||||+++|+|+..++.|.+...+...... ...++.+++++|.+.+++. .++.++
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~i~~v~q~~~l~~~-----ltv~en 90 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL---PPERRGIGFVPQDYALFPH-----LSVYRN 90 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---CTTTSCCBCCCSSCCCCTT-----SCHHHH
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC---chhhCcEEEEcCCCccCCC-----CcHHHH
Confidence 34456 89999999999999999999999999988554333221110 1113567899999888765 455555
Q ss_pred HHH
Q 038901 94 VKC 96 (107)
Q Consensus 94 ~~~ 96 (107)
+.+
T Consensus 91 l~~ 93 (240)
T 2onk_A 91 IAY 93 (240)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.52 E-value=9.7e-16 Score=98.87 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=47.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+..........+ ++.+++++|.|.+++
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~l~~ 96 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL-RRQVGVVLQDNVLLN 96 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH-HHHEEEECSSCCCTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH-HhcEEEEeCCCcccc
Confidence 3445789999999999999999999999999988854433322111010011 346899999998764
No 28
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.50 E-value=1.9e-15 Score=98.88 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPG 78 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~ 78 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+.... ...... .++.+++++|.|.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~-~~~~ig~v~Q~~~ 94 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK-LRESIGIVFQDPD 94 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH-HHHSEEEECSSGG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH-HhCcEEEEEcCcc
Confidence 345678999999999999999999999999999886543332211 000001 1356899999883
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.50 E-value=4.7e-15 Score=96.57 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=53.2
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC-CCCCCCCCchHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVGK 91 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p-~~~~~~~~~~~~~~ 91 (107)
.....+|++++|+||||||||||+++|+|+..+++|.+.......... .+ ++.+++++|.| .++.. .++.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~-~~~i~~v~q~~~~~~~~-----~tv~ 97 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EI-RRNIGIAFQYPEDQFFA-----ERVF 97 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HH-GGGEEEECSSGGGGCCC-----SSHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hh-hhhEEEEeccchhhcCC-----CcHH
Confidence 345567899999999999999999999999999988554333221111 12 45689999986 33333 4666
Q ss_pred HHHHHh
Q 038901 92 EIVKCL 97 (107)
Q Consensus 92 ~~~~~~ 97 (107)
+++.+.
T Consensus 98 enl~~~ 103 (266)
T 2yz2_A 98 DEVAFA 103 (266)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766654
No 30
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.50 E-value=1.6e-14 Score=92.22 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=43.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+..+..|.+. + ...++|++|.|.+++
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-------------~-~g~i~~v~q~~~~~~ 82 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-------------H-SGRISFCSQFSWIMP 82 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-------------E-CSCEEEECSSCCCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE-------------E-CCEEEEEecCCcccC
Confidence 34457899999999999999999999999998877421 1 235789999988764
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.49 E-value=1.3e-15 Score=98.46 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCC--ccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~ 91 (107)
....+|++++|+||||||||||+++|+|+ ..++.|.+...+............+...++++|.|.+++. .++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv~ 98 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG-----VTIA 98 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS-----CBHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC-----CCHH
Confidence 34557899999999999999999999998 6777775443332211100000112336788899888765 4455
Q ss_pred HHHH
Q 038901 92 EIVK 95 (107)
Q Consensus 92 ~~~~ 95 (107)
+++.
T Consensus 99 e~l~ 102 (250)
T 2d2e_A 99 NFLR 102 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.49 E-value=3.1e-15 Score=97.50 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....+|++++|+||||||||||+++|+|+. .++.|.+...+............+..+++++|.|.+++.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 345678999999999999999999999984 567775433322111100000001237899999987765
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=92.75 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
....+|++++|+||||||||||+++|+|+..++.|.+. + ...+++++|.|.++ . .++.++
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~-~g~i~~v~Q~~~~~-~-----~tv~en 85 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-------------I-KGSVAYVPQQAWIQ-N-----DSLREN 85 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE-------------E-CSCEEEECSSCCCC-S-----EEHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-------------E-CCEEEEEcCCCcCC-C-----cCHHHH
Confidence 34567899999999999999999999999988877422 1 23578888888654 2 345555
Q ss_pred HHH
Q 038901 94 VKC 96 (107)
Q Consensus 94 ~~~ 96 (107)
+.+
T Consensus 86 l~~ 88 (237)
T 2cbz_A 86 ILF 88 (237)
T ss_dssp HHT
T ss_pred hhC
Confidence 443
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.48 E-value=5.6e-15 Score=95.93 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+..+ .|.+.............. .++.+++++|.|.+++
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNS-IRSIIGIVPQDTILFN 106 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHH-HHTTEEEECSSCCCCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHH-HhccEEEEcCCCcccc
Confidence 44567899999999999999999999999876 564433222111111111 1356899999998764
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=2.6e-15 Score=98.45 Aligned_cols=65 Identities=11% Similarity=-0.039 Sum_probs=45.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~~ 79 (107)
....+|++++|+||||||||||+++|+|+..++.|.+...+.... ......+ ++.+++++|.+.+
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~~~i~~v~Q~~~~ 108 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV-RQHIGFVSHSLLE 108 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH-HTTEEEECHHHHT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH-cCcEEEEEcCccc
Confidence 344578999999999999999999999999999885443332211 1010111 3568899998754
No 36
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.44 E-value=9.1e-14 Score=91.53 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
...+|++++|+||||||||||+++|+|+..++.|.+.. ...++|++|.|.+++
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------~g~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--------------SGRISFCSQNSWIMP 112 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC--------------CSCEEEECSSCCCCS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE--------------CCEEEEEeCCCccCc
Confidence 34578999999999999999999999999988774321 235788999887765
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.44 E-value=3.6e-14 Score=100.88 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=50.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~Q~~~l~~ 430 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN-LRRHFALVSQNVHLFN 430 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHH-HhcCeEEEcCCCcccc
Confidence 34455678999999999999999999999999999886554443322111111 2457899999998875
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.42 E-value=3.6e-14 Score=92.32 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEE-EEEeCCCCCCCCCCchHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVV-NVIDTPGLFDLSAGSEFVGKE 92 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~v~d~p~~~~~~~~~~~~~~~ 92 (107)
.... |++++|+||||||||||+++|+|+. ++.|.+.......... .. ++.++ +++|.|.+ . .++.+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~~-~~~i~~~v~Q~~~l--~-----~tv~e 92 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---RN-YIRYSTNLPEAYEI--G-----VTVND 92 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---SC-CTTEEECCGGGSCT--T-----SBHHH
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---HH-hhheEEEeCCCCcc--C-----CcHHH
Confidence 3445 7999999999999999999999999 9888544333221111 11 45688 99999887 3 45566
Q ss_pred HHHHh
Q 038901 93 IVKCL 97 (107)
Q Consensus 93 ~~~~~ 97 (107)
++.+.
T Consensus 93 nl~~~ 97 (263)
T 2pjz_A 93 IVYLY 97 (263)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
No 39
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.42 E-value=4.5e-13 Score=86.23 Aligned_cols=88 Identities=39% Similarity=0.610 Sum_probs=51.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc-hHHHHHHHH
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK 95 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~-~~~~~~~~~ 95 (107)
.+..+|+|+|.+|+|||||+|.|++...........+.+.........+ ....+.++||||+.+..... +....++..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3457899999999999999999999876544322222333333333333 56788999999997643221 223344445
Q ss_pred HhhccCCCCC
Q 038901 96 CLGMAKDGIH 105 (107)
Q Consensus 96 ~~~~~~~~~~ 105 (107)
++....++++
T Consensus 98 ~~~~~~~~~d 107 (247)
T 3lxw_A 98 CYLLSAPGPH 107 (247)
T ss_dssp HHHHHTTCCS
T ss_pred HHHhcCCCCC
Confidence 5433334443
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.40 E-value=2.3e-14 Score=97.69 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=46.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....+|++++|+||||||||||+++|+|+.. +.|.+..............+ ++.+++++|.+.+++
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~-rr~ig~v~Q~~~lf~ 107 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW-RKAFGVIPQKVFIFS 107 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH-HHTEEEESCCCCCCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH-hCCEEEEcCCcccCc
Confidence 3556789999999999999999999999987 77754333322111111111 356899999998875
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.40 E-value=3.7e-14 Score=100.80 Aligned_cols=75 Identities=23% Similarity=0.178 Sum_probs=52.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~ 94 (107)
..++|++++|+||||||||||+++|+|+..++.|.+..++..........+ ++.+++++|.|.+++. ++++++
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~v~Q~~~l~~~------tv~eni 437 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL-RNQVALVSQNVHLFND------TVANNI 437 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH-HHTEEEECSSCCCCSS------BHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH-HhhCeEEccCCcCCCC------CHHHHH
Confidence 445789999999999999999999999999998855433322111111111 3468999999988753 455555
Q ss_pred HH
Q 038901 95 KC 96 (107)
Q Consensus 95 ~~ 96 (107)
.+
T Consensus 438 ~~ 439 (582)
T 3b60_A 438 AY 439 (582)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.39 E-value=2.4e-14 Score=101.76 Aligned_cols=67 Identities=22% Similarity=0.114 Sum_probs=49.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|++++|+||||||||||+++|+|+..++.|.+..++..........+ ++.+++++|.|.+++.
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~-r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL-RNQIGLVQQDNILFSD 429 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH-HHTEEEECSSCCCCSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH-hhheEEEeCCCccCcc
Confidence 446789999999999999999999999999998865443332221111111 3568999999998864
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.39 E-value=3.6e-14 Score=101.11 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|++++|+||||||||||+++|+|+..++.|.+..++..........+ ++.+++++|.|.+++
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-~~~i~~v~Q~~~l~~ 431 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWL-RSKIGTVSQEPILFS 431 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHH-HHSEEEECSSCCCCS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHH-HhceEEEccCCcccC
Confidence 445789999999999999999999999999998865433322111111111 346899999998875
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.39 E-value=3.4e-14 Score=101.27 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~ 93 (107)
...++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++. +.+++
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~------tv~en 448 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS-LRSSIGIVLQDTILFST------TVKEN 448 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHH-HHHHEEEECTTCCCCSS------BHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHH-HHhceEEEeCCCccccc------cHHHH
Confidence 345678999999999999999999999999999886544333222211111 14579999999988753 55565
Q ss_pred HHH
Q 038901 94 VKC 96 (107)
Q Consensus 94 ~~~ 96 (107)
+.+
T Consensus 449 i~~ 451 (598)
T 3qf4_B 449 LKY 451 (598)
T ss_dssp HHS
T ss_pred Hhc
Confidence 543
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.36 E-value=3.8e-14 Score=100.91 Aligned_cols=66 Identities=23% Similarity=0.168 Sum_probs=49.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~ 430 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD-LRGHISAVPQETVLFS 430 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHH-HHHHEEEECSSCCCCS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHH-HHhheEEECCCCcCcC
Confidence 44678999999999999999999999999999886544333322222111 2457999999998875
No 46
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.34 E-value=1e-12 Score=86.83 Aligned_cols=63 Identities=27% Similarity=0.241 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC---ceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS---GVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+++++|+|+||||||||+|+|+|+..+..|.+.. .+........ ....+..++++|+|++..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~-~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTTSCEEESSCSSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-EEEcCCCCEEEECcCCCc
Confidence 46899999999999999999999999998885543 1111111111 111245789999998753
No 47
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.33 E-value=1.1e-11 Score=79.87 Aligned_cols=86 Identities=36% Similarity=0.619 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~ 97 (107)
....|+|+|++|+|||||+|.|++...+.........+.........+ ......++||||+.+.....+...+++..++
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 447899999999999999999998764443321111222222233333 5678899999999876544444444444444
Q ss_pred hccCCCC
Q 038901 98 GMAKDGI 104 (107)
Q Consensus 98 ~~~~~~~ 104 (107)
...+.++
T Consensus 100 ~~~~~~~ 106 (260)
T 2xtp_A 100 LLSAPGP 106 (260)
T ss_dssp HHHTTCC
T ss_pred HhcCCCC
Confidence 4333433
No 48
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=2.3e-12 Score=85.24 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC---ceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS---GVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+++++|+|+||+|||||+|+|+ ...+..|.+.. .+........ .......++++|+|++..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSK 228 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCc
Confidence 46899999999999999999999 98888886543 2211111111 111235789999999863
No 49
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.32 E-value=7.2e-13 Score=80.29 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=40.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
..+|++++|+||||||||||+++|+|.. +..|.+........... .. .+ +++|.+.++
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~-~~---~~~q~~~l~ 87 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NI-AG---KMIYHFDLY 87 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EE-TT---EEEEEEECT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cC-CC---cceeccccc
Confidence 4678999999999999999999999999 77786554333221111 11 22 566766666
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.32 E-value=1.1e-13 Score=105.70 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|+++||||+||||||||+++|+++..+..|.+..++..........+ ++++.+|+|+|.+++.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l-R~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT-RSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH-HTTEEEECSSCCCCSE
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH-HhheEEECCCCEeeCc
Confidence 446789999999999999999999999999999966555544433333233 6789999999999864
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=5e-12 Score=90.37 Aligned_cols=51 Identities=14% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+|++++|+||||||||||+++|+|+..++.|.+.. ...++|++|.+.+..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------------DLTVAYKPQYIKAEY 430 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--------------CCCEEEECSSCCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--------------eeEEEEEecCccCCC
Confidence 568999999999999999999999999999886542 235778888876643
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.29 E-value=6.8e-12 Score=88.62 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=41.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
.+|++++|+|+||||||||+++|+|+..+..|.+.. ...++|++|.+...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------------~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------------DLTVAYKPQYIKAD 359 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--------------CCCEEEECSSCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--------------CceEEEEecCCcCC
Confidence 478999999999999999999999999999886542 23577888887654
No 53
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.29 E-value=8.5e-13 Score=87.49 Aligned_cols=64 Identities=30% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..+|++++|+|+||+|||||+|+|+|...+..|.+.. +..+......... . .++++|+|++...
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~--~-~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT--S-GGLVADTPGFSSL 237 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE--T-TEEEESSCSCSSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc--C-CEEEecCCCcccc
Confidence 3457999999999999999999999999888875442 1111111111111 2 6899999999764
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.27 E-value=5.9e-13 Score=101.48 Aligned_cols=67 Identities=21% Similarity=0.134 Sum_probs=50.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|++++|+|+||||||||+++|+|+..++.|.+..++.......... .+..+++++|.|.+++.
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY-LREIIGVVSQEPVLFAT 478 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHH-HHHHEEEECSSCCCCSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHH-HHhheEEEcCCCccCCc
Confidence 44678999999999999999999999999999886544433222212111 24569999999998864
No 55
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=85.27 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.+++|+|+||||||||+|+|+|+..+..|.+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i 33 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASS 33 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 5799999999999999999999999888754
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.24 E-value=6.5e-13 Score=101.46 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|+.++|+|++|||||||+++|+|+..+..|.+..++........ .+.++.++++.|+|.+++.
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~-~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL-EFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHEEEECSSCCCCSE
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH-HHHhhcccccCCcceeeCC
Confidence 446789999999999999999999999999999865544433222222 2224679999999999874
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.24 E-value=1.6e-12 Score=99.11 Aligned_cols=71 Identities=20% Similarity=0.106 Sum_probs=52.7
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.......+|++++|+|+||||||||+++|+|+..+..|.+..++.......... .+..+++++|.|.+++.
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW-LRAQLGIVSQEPILFDC 1121 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHH-HTTSCEEEESSCCCCSS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHH-HHhceEEECCCCccccc
Confidence 344556689999999999999999999999999999886554443322222112 25679999999987753
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.19 E-value=2.6e-11 Score=85.63 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5789999999999999999999999999998853
No 59
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.17 E-value=5.2e-12 Score=79.57 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.+|++++|+||||||||||+++|+|+ .++.|.+.. .... ..... .+..+++++|.+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~-~~~~ig~v~q~~ 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVE-AGEKLGFLPGTL 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCC-TTCCCCSSCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchh-hhcceEEecCCH
Confidence 45799999999999999999999999 998886631 1111 11111 134567777765
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.17 E-value=2.1e-11 Score=86.13 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.+|++++|+||||||||||+|+|+|+..++.|.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 3789999999999999999999999999998854
No 61
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.14 E-value=9.9e-11 Score=80.36 Aligned_cols=62 Identities=26% Similarity=0.267 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+++|+|+||||||||+|+|+|+..++.|.+........... ...........+.|+|++..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence 399999999999999999999999998886544332211000 01111112467788888753
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4.7e-11 Score=85.39 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
..+|++++|+||||||||||+++|+|+..++.|.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45789999999999999999999999999999865
No 63
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.12 E-value=2.2e-11 Score=76.30 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+|++++|+||||||||||+++|+|+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 556789999999999999999999999875
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.12 E-value=4.5e-11 Score=84.47 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
...+|++++|+|+||||||||+++|+|+..++.|.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 45788999999999999999999999999998886
No 65
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.11 E-value=5.4e-12 Score=79.82 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
........+|++++|+||||||||||+++|+|+.
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445556678999999999999999999999987
No 66
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.8e-10 Score=76.65 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhh
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~ 98 (107)
..|+|||.+++|||||||+|++.....+. ..+.|.........+ ....+.++|+||+............+++..++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~--~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAE--YEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGG--TCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 57999999999999999999997643332 234555555455554 67788999999998653333334455554443
No 67
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.10 E-value=3.9e-10 Score=73.23 Aligned_cols=62 Identities=29% Similarity=0.421 Sum_probs=43.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.+++|+|++|+|||||+|.|+|.....+.. .+.+.........+ ....+.++|+||++....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNW--PGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEEC--TTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCC--CCeEEEeeEEEEEE-CCceEEEEeCCCcccccc
Confidence 679999999999999999999986533221 22333333333343 566789999999987543
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.10 E-value=4.6e-12 Score=83.84 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.....++++++|+|+||||||||++.|+++..+..|.
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~ 130 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 130 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 3445678999999999999999999999998887764
No 69
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.10 E-value=4.8e-10 Score=68.07 Aligned_cols=63 Identities=32% Similarity=0.429 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
++..++|+|++|+|||||+|.|++...+.... ..+.+.........+ ......++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEE-CCeEEEEEECCCcccc
Confidence 46789999999999999999999875432111 111111111122333 4556789999998654
No 70
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.09 E-value=5.9e-11 Score=80.14 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGS 51 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~ 51 (107)
+|++++|+|+||+|||||+|+|+|... +..|.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 468999999999999999999999998 8777543
No 71
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.09 E-value=6.8e-10 Score=71.81 Aligned_cols=77 Identities=30% Similarity=0.396 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~ 96 (107)
+..+++|+|.+|+|||||+|.|++........ ....+.........+ ......++||||+.+.....+...+.+..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 34789999999999999999999876433221 112222222222333 567889999999976644444444444433
No 72
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.08 E-value=2.4e-11 Score=86.91 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=42.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~ 97 (107)
.++|+|+||||||||+++|+|+..| .+|.+...+........ ....+..+++++|.+.+++. .++.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDA-----SEVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCH-----HHHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCH-----HHHHHHHHHH
Confidence 3999999999999999999999877 67866554443211110 01113456788888888765 6676666554
No 73
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=3.3e-10 Score=77.32 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
......+.+++|+|+||+|||||+|+|++...
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 33455679999999999999999999999543
No 74
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.08 E-value=6.2e-11 Score=78.73 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=29.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
..++++++|+|+||||||||+++|+++..+..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 567899999999999999999999999877544
No 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.4e-10 Score=81.78 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
|++++|+|+||||||||+++|+|+..++.|.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4789999999999999999999999999884
No 76
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.07 E-value=5.4e-11 Score=80.38 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.+|+.++|+|+||||||||+++|+++..+..|.+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 3678999999999999999999999999877743
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.07 E-value=9.4e-11 Score=83.87 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
...+|++++|+|+||||||||+++|+|+..++.|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 35788999999999999999999999999998886
No 78
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.06 E-value=9.6e-11 Score=72.78 Aligned_cols=53 Identities=19% Similarity=0.039 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDT 76 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 76 (107)
|++++|+|+||||||||+++|+++.. ..| +......... .....+..+++++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~---~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE---VRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE---EETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch---hHhhhceEEEEEEe
Confidence 46899999999999999999999988 777 4443322211 11124556677765
No 79
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.06 E-value=2e-10 Score=71.43 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+..++.+++|+|+||||||||+|.|+|.. .++.|.... . ....+. . ...++|+||+..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~-----~--~~~~~~-~-~~~l~Dt~G~~~ 84 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL-----I--NLFEVA-D-GKRLVDLPGYGY 84 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC-----E--EEEEEE-T-TEEEEECCCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee-----e--EEEEec-C-CEEEEECcCCcc
Confidence 556678999999999999999999999987 333332211 0 111221 2 456789999854
No 80
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=8.6e-11 Score=74.50 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
+-..++|+.++|+||||||||||+++|++..++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345678899999999999999999999998874
No 81
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.04 E-value=1.2e-09 Score=65.76 Aligned_cols=60 Identities=27% Similarity=0.467 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|+|++|+|||||+|.|++........ .+.+.........+ ......++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECCCcccC
Confidence 679999999999999999999865432211 11111111122232 4567899999998765
No 82
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.03 E-value=1.6e-09 Score=70.08 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..++|+|.+|+|||||+|.|+|.....+.. .+.+.........+ ......++|+||.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLV 62 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCCCccccc
Confidence 468999999999999999999986433321 23333333333333 56688999999998764
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.01 E-value=1.7e-11 Score=82.79 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.....++++++|+|+||||||||++.|+++..+..|.
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~ 187 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 187 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE
Confidence 3445678999999999999999999999998877664
No 84
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=1e-09 Score=75.62 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.2
Q ss_pred CCCCceE--EEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERT--VVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~--i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+|.+ ++|+|+||||||||+|+|+|..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4456788 9999999999999999999985
No 85
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.00 E-value=9.4e-10 Score=72.62 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+...++|+|++|+|||||+|.|++........ ..+.+......... .......++||||+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHT-EGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEE-ETTEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEE-ECCeeEEEEECcCCC
Confidence 34689999999999999999999986432210 11111111111122 245677889999986
No 86
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.00 E-value=3.9e-09 Score=69.72 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++|+|.+|+|||||+|.|++....... ....++................++||||+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs--~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS--PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCC--SSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeec--CCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 46999999999999999999987553211 11112111111111124667889999999764
No 87
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.00 E-value=1.1e-10 Score=71.89 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
+++++|+||||||||||+++|+++..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 367999999999999999999998763
No 88
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.99 E-value=2.4e-09 Score=65.26 Aligned_cols=61 Identities=26% Similarity=0.460 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...++|+|++|+|||||++.|++........ ...+.........+ ......++|+||....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCcc
Confidence 3689999999999999999999864332221 11222222233333 4677899999998765
No 89
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.99 E-value=1.6e-10 Score=71.68 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+|++++|+||||||||||+++|+++.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4679999999999999999999999753
No 90
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.99 E-value=2.4e-09 Score=69.50 Aligned_cols=63 Identities=35% Similarity=0.495 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..+++++|.+|+|||||+|.|++......+. ..+.+.......... ......++||||+.+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCc
Confidence 4689999999999999999999876432221 111111111122222 46678999999997653
No 91
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.98 E-value=2e-09 Score=70.11 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..++|+|.+|+|||||+|.|++.....+. ..+.+.........+ ....+.++|+||+++..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEe-CCCceEEEECcCCCccc
Confidence 67999999999999999999998643222 123333333333343 45678899999998764
No 92
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.98 E-value=3.2e-09 Score=69.60 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~ 85 (107)
....++++|.+|+|||||+|.|++......+.. .+.|.... .... .....++||||+......
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~--~~~~--~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQ--WVKV--GKELELLDTPGILWPKFE 181 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEEE--TTTEEEEECCCCCCSCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeE--EEEe--CCCEEEEECcCcCCCCCC
Confidence 346899999999999999999998765444321 12222221 1222 346789999999876443
No 93
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.98 E-value=3.9e-11 Score=80.19 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
..++++++|+|+||||||||++.|+++..+..|.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~ 159 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS 159 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 3578999999999999999999999998887664
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.97 E-value=1.4e-10 Score=75.34 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK-AS 48 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-~g 48 (107)
..+|..++|+||||||||||+++|+++..+. .|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G 55 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY 55 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC
Confidence 4678999999999999999999999998776 55
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.97 E-value=2.3e-11 Score=85.02 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
..+...++.+++|+|+||||||||+++|++++.+..|.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~ 323 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKS 323 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCe
Confidence 34456678999999999999999999999998877664
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.97 E-value=2.8e-09 Score=70.56 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDLS 83 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~~ 83 (107)
+.-.|+|+|.+|+|||||+|.|++....... ...+.+.......... . .....++||||+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc
Confidence 3457999999999999999999997644221 1111222222222222 4 6788999999998653
No 97
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.97 E-value=1.5e-10 Score=72.19 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+++.++|+||||||||||+++|+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 568899999999999999999998764
No 98
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.97 E-value=1.9e-10 Score=73.04 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSIL-GRR 43 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~-g~~ 43 (107)
....+|++++|+||||||||||+++|+ ++.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344578999999999999999999999 886
No 99
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.6e-10 Score=80.29 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.+|++++|+||||||||||+++|+|+..+..|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 47899999999999999999999999988877
No 100
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.95 E-value=2.9e-10 Score=79.36 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=31.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS 52 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~ 52 (107)
...+ ++++|+||||||||||+++|+|+..++.|.+..
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 4455 899999999999999999999999998886443
No 101
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.94 E-value=1.5e-09 Score=67.94 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....|+|+|.+|+|||||+|.|++... .... ...+.+.................++||||+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS-KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT-CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeec-CCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 457899999999999999999998752 1111 111222222222222123467889999998653
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=3.4e-10 Score=74.98 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.++++++|+||||||||||+++|+++..+.+|.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~ 132 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKK 132 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence 367999999999999999999999998887663
No 103
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.93 E-value=3.8e-10 Score=68.77 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHH
Q 038901 16 SNGERTVVLLGRTGNGKSATGNS 38 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~ 38 (107)
..+|++++|+|+||||||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34689999999999999999994
No 104
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=1.9e-09 Score=74.07 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+.+..++|+|+||||||||||+|++......+.. ..+.........+.......+.|+|++..
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~--ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYP--FTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCT--TCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcc--cceecceeeEEEecCcceEEEEecccccc
Confidence 3457899999999999999999999865333211 11111122222321236678999999864
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.92 E-value=8.9e-10 Score=67.72 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..+|++++|+|+||||||||+++|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 346799999999999999999999997
No 106
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.92 E-value=3.7e-09 Score=68.75 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEee-CC--cEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~ 82 (107)
..++|+|.+|+|||||+|.|++......... ....+........... .. ....++||||+.+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 6799999999999999999988765443210 0011111111111111 12 37899999999644
No 107
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.91 E-value=5.6e-10 Score=69.89 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=27.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
..++++++|+|+||||||||+++|+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999998764
No 108
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.90 E-value=3.5e-09 Score=73.06 Aligned_cols=60 Identities=30% Similarity=0.358 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
...++|+|+||+|||||+|.|+|......+. ..+.+.........+ ......++||||+.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLR 239 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEE-CCEEEEEEECCCCc
Confidence 4689999999999999999999986532221 112222222223333 45667888999974
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.90 E-value=7.6e-09 Score=66.91 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
...++|+|.+|+|||||+|.|++.....+.. .+.+.......... ......++|+||.+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECCCcCccC
Confidence 3579999999999999999999876543221 12333332233332 45688999999998654
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.90 E-value=1.1e-08 Score=60.67 Aligned_cols=61 Identities=30% Similarity=0.366 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..++++|+.|+|||||++.+++........ ....+.......... ......++|+||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCc
Confidence 468999999999999999998765321111 111111122222232 4567889999998763
No 111
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.90 E-value=4.3e-10 Score=83.85 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
...+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus 695 ~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I 730 (986)
T 2iw3_A 695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730 (986)
T ss_dssp EEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 345789999999999999999999999999988854
No 112
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.90 E-value=5.9e-10 Score=74.53 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
+|+.++|+|+||||||||+++|+++..+..|.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~ 201 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI 201 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE
Confidence 57899999999999999999999999888774
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.90 E-value=6.4e-10 Score=68.40 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+++|+||||||||||+++|+|+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999874
No 114
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.89 E-value=4.9e-10 Score=74.23 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=27.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++|++++|+||||||||||+++|+|+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345678999999999999999999999987
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.88 E-value=7.2e-10 Score=67.99 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+|+.++|+||||||||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 568999999999999999999998764
No 116
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.88 E-value=5.8e-10 Score=69.65 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++.+++|+|+||||||||+++|+++..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999999754
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.88 E-value=5.1e-10 Score=75.33 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.+..+|++++|+|+||||||||+++|+|+..++.|.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 455688999999999999999999999999887663
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.85 E-value=1e-09 Score=72.59 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc--cccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA--FKAS 48 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~--~~~g 48 (107)
..++.+++|+|+||||||||+++|+++.. +..|
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 45679999999999999999999999876 5555
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.85 E-value=1.1e-09 Score=75.79 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.+..+|++++|+|+||||||||+++|+|+..++.|.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~ 187 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV 187 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE
Confidence 566789999999999999999999999999887774
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.84 E-value=1.2e-09 Score=68.71 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+|++++|+||||||||||+++|++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999998443
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.84 E-value=5.8e-09 Score=64.24 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
..++|+|+||||||||++.|++...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999999987654
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.84 E-value=2e-09 Score=68.93 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh---CCcccccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFKAS 48 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~---g~~~~~~g 48 (107)
+++++|+|+||||||||+++|+ |+..++.|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 5899999999999999999999 98877655
No 123
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.84 E-value=1.6e-09 Score=69.36 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=25.0
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.......++.+++|+|+||||||||+++|+++.
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344556678999999999999999999999865
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.83 E-value=1.1e-09 Score=73.92 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~ 47 (107)
+++++|+|+||||||||+++|+|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 79999999999999999999999988876
No 125
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.83 E-value=8.1e-09 Score=70.56 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
....+..++|+|++|+|||||+|+|++...
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 344568899999999999999999998743
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.83 E-value=6.8e-09 Score=67.69 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
..++|+|++|+|||||+|.|++.....+.. .+.+.......... .....++|+||.+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVKK--NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECTT--CTTEEEEECCCCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEec--CCeEEEEECCCcCccC
Confidence 579999999999999999999975332211 12222111111111 4567899999998653
No 127
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.83 E-value=6.7e-09 Score=70.30 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+++|+|++|+|||||+|.|++........ ...+.........+ ....+.+.||||+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTVGFIR 238 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCCCchh
Confidence 359999999999999999999986532221 12222222223333 456778999999754
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=1.2e-09 Score=73.29 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
...++.+++|+|+||||||||+|+|+++..+..|
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 3467899999999999999999999987766554
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.82 E-value=2.4e-09 Score=68.08 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|++++|+||||||||||+++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999999999999999
No 130
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.82 E-value=7.7e-09 Score=63.92 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++|+|+||||||||++.|++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998754
No 131
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.82 E-value=2.4e-09 Score=66.39 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.+|.+++|+|+|||||||+++.|++...+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45789999999999999999999998744433
No 132
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.82 E-value=3.4e-09 Score=71.77 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc-cc---CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-AS---AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
+..++++|.+|+|||||+|+|++..... .. ......++... ..... .....++||||+.+...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~-~~~~~--~~~~~liDtPG~~~~~~ 226 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL-IDIPL--DEESSLYDTPGIINHHQ 226 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE-EEEES--SSSCEEEECCCBCCTTS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce-EEEEe--cCCeEEEeCCCcCcHHH
Confidence 4679999999999999999999863211 00 01112222111 11222 22379999999987643
No 133
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.81 E-value=1e-09 Score=74.35 Aligned_cols=60 Identities=25% Similarity=0.240 Sum_probs=38.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
+..++++|.+|+|||||+|+|++.. ....+ ...+.|.... ... -.....++||||+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~--~~~--~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMI--EIP--LESGATLYDTPGIINHH 226 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEE--EEE--CSTTCEEEECCSCCCCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeE--EEE--eCCCeEEEeCCCcCcHH
Confidence 4679999999999999999999862 12111 1112222211 122 23347999999998654
No 134
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=1.5e-08 Score=69.66 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
..++|+|+||+|||||+|+|+|...+..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 46899999999999999999998875433
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=3.7e-09 Score=66.22 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.+|..++|+||||||||||++.|++...+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46789999999999999999999988754
No 136
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.78 E-value=2.7e-08 Score=66.99 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..|+|+|.+|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999954
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.78 E-value=1.5e-08 Score=69.92 Aligned_cols=60 Identities=30% Similarity=0.435 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|+|.+|+|||||+|.|++...+... ...+.+.........+ ....+.++||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccc
Confidence 36899999999999999999987543222 1122333333344444 566789999999874
No 138
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.78 E-value=3.5e-09 Score=68.19 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh---CCccccccC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSIL---GRRAFKASA 49 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~---g~~~~~~g~ 49 (107)
.++.+++|+|+|||||||+++.|+ |+..++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 457899999999999999999999 888777663
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.77 E-value=2.5e-09 Score=73.55 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.++..++|+||||||||||+++|+++..+..|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g 196 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER 196 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 46789999999999999999999999887766
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.77 E-value=3.2e-09 Score=74.70 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~ 49 (107)
.+..++|+|+||||||||+++|+++..+..|.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gi 290 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKV 290 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCE
Confidence 56789999999999999999999999877663
No 141
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.77 E-value=5.1e-08 Score=61.46 Aligned_cols=62 Identities=27% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....|+|+|.+|+|||||+|.|++........ ...+.......... ......++|+||+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSY--SFTTKNLYVGHFDH-KLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------CEEEEEEEE-TTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCcceeeeeeeeec-CCCeEEEEECCCCcC
Confidence 345789999999999999999999865432211 11122222222222 456788999999964
No 142
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.76 E-value=2.2e-08 Score=60.32 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+...++|+|++|+|||||++.+++........ ...+.........+ ......++|+||...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHH
Confidence 44789999999999999999998865432211 01111111122222 445667889998643
No 143
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.76 E-value=3.7e-08 Score=66.32 Aligned_cols=62 Identities=27% Similarity=0.199 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++++|++|+|||||+|.|++........ ...+.......... ......++||||+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFED-GYFRYQIIDTPGLLDR 227 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEEEEE-TTEEEEEEECTTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEEEEe-cCceEEEEeCCCcccc
Confidence 44789999999999999999999976432221 11122222222222 4567899999998653
No 144
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.76 E-value=1.8e-08 Score=60.16 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
..++++|++|+|||||+|.+++......-....+.+.. ........ .....++|+||...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchh
Confidence 67999999999999999999876532211111111111 11122211 24677999999743
No 145
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=9.2e-09 Score=67.92 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC-cccccc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR-RAFKAS 48 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~-~~~~~g 48 (107)
..++|+|+||+|||||+|+|++. ..+..|
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 67899999999999999999997 555555
No 146
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.75 E-value=2e-08 Score=61.33 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+|++|+|||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999999864
No 147
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.75 E-value=2.7e-08 Score=60.88 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.....++|+|++|+|||||+|.|++... .... ...+.+.... .... .....++|+||+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~t~~~~--~~~~--~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTS-SKPGKTQTLN--FYII--NDELHFVDVPGYGFA 82 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEE--EEEE--TTTEEEEECCCBCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccC-CCCCceeeEE--EEEE--CCcEEEEECCCCCcc
Confidence 3457899999999999999999998642 1111 1111111111 1111 335789999997654
No 148
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.75 E-value=1e-08 Score=66.59 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
..++++|.+|+|||||+|.|++......+.. .+.+... .... ......++||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~--~~~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGI--QWFS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCS--CEEE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccce--EEEE--eCCCEEEEECCCcccCcC
Confidence 4899999999999999999998766444321 1122111 1111 234678999999987643
No 149
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=5.1e-09 Score=70.83 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+|.+|+|||||+|+|++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 679999999999999999999855
No 150
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=6.1e-08 Score=57.83 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
...++++|+.|+|||||+|.+++......-......+.. ....... .....++|+||....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~ 64 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQF 64 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhh
Confidence 367999999999999999999975432211111111111 1111111 235789999997654
No 151
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.73 E-value=2.6e-09 Score=72.46 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK-AS 48 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-~g 48 (107)
..++..++|+||||||||||+++|+++..+. .|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g 166 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY 166 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc
Confidence 4567899999999999999999999988776 45
No 152
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.73 E-value=4.6e-09 Score=64.56 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+++++|+|+||||||||++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999986
No 153
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.73 E-value=5.3e-09 Score=64.98 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++++++|+|+||||||||+++|++..
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567999999999999999999998654
No 154
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.73 E-value=2.8e-08 Score=60.84 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~ 82 (107)
...|+|+|++|+|||||++.|++...........+.... ....... ......++|+||....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFS--TRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEE--EEEEEETTEEEEEEEEEESCCCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCCchhh
Confidence 357999999999999999999875433221111111111 1111111 1345688999998654
No 155
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.73 E-value=3e-09 Score=71.84 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
.++..++|+||||||||||+++|+++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 345799999999999999999999998776
No 156
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.73 E-value=2.4e-08 Score=59.54 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~ 81 (107)
..++++|+.|+|||||++.+++...........+.+. ........ ......++|+||...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF--LTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCChh
Confidence 5799999999999999999986543321111111111 11222221 123678999999643
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.72 E-value=1.1e-08 Score=70.93 Aligned_cols=61 Identities=30% Similarity=0.299 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..+|+|+|.+|+|||||+|.|++....... ...+.+.........+ ....+.++||||+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDI 83 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEE-CCceEEEEECCCCCC
Confidence 368999999999999999999986543221 1122232222233333 456789999999864
No 158
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.72 E-value=4.9e-08 Score=59.64 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~ 81 (107)
....++|+|+.|+|||||++.|++...........+.+ ......... ......++|+||...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHH
Confidence 34689999999999999999998765322111111111 111112211 134678899999654
No 159
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.72 E-value=5.9e-08 Score=58.99 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
.+...++++|++|+|||||++.+++.. ... ...+.........+ ......++|+||.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQ 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCC
Confidence 455889999999999999999999765 211 11111122233333 5677889999986
No 160
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.72 E-value=5.7e-09 Score=65.19 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=25.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+..+++.++|+||||||||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445679999999999999999999997654
No 161
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.71 E-value=4.2e-08 Score=58.59 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
..++++|++|+|||||++.+++.............. ......... ......++|+||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEESSSCEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEECCEEEEEEEEECCCcH
Confidence 679999999999999999998654322111111111 111112221 12356788999864
No 162
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=59.85 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.|++....... ....+.........+ .. ....++|+||..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEE-TTEEEEEEEEEETTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEE-CCEEEEEEEEcCCCch
Confidence 367999999999999999999986543221 122222222222332 33 467888999854
No 163
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.71 E-value=3.4e-08 Score=58.80 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
...++++|++|+|||||+|.|++...........+. ........... .....++|+||...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV--DFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSS--SEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEE--EEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 367999999999999999999875432211111111 11111222211 23678889998643
No 164
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.71 E-value=4.1e-08 Score=59.89 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....++|+|++|+|||||+|.|++....... ...+.+..... .. ......++|+||+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~--~~--~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINF--YL--VNSKYYFVDLPGYGY 80 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEE--EE--ETTTEEEEECCCBSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEE--EE--ECCcEEEEECCCCcc
Confidence 34468999999999999999999987632221 11111111111 11 234567999999754
No 165
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.70 E-value=3.2e-08 Score=58.98 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
..++|+|+.|+|||||++.+++...........+.+.. ........ .....++|+||...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHH
Confidence 57999999999999999999864332211111111111 11122211 34678899999653
No 166
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.70 E-value=3.9e-08 Score=70.21 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~ 82 (107)
+..+|+|+|++|+|||||+|.|+|.... ..+......+........ .......+.++||||+.+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3467999999999999999999997642 111111112211111000 0113567899999999864
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=6.5e-08 Score=65.34 Aligned_cols=63 Identities=29% Similarity=0.350 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CceeeEeeeeeEEee-CC--cEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~-----~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~ 82 (107)
..++|+|++|+|||||+|.|++...+..+... ...+........... .. ....++||||+.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 56899999999999999999887655443211 011111111111111 11 25789999999543
No 168
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.69 E-value=6.3e-08 Score=59.81 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEe-eCCcEEEEEeCCCCCCC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVL-KDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~-~~~~~~~v~d~p~~~~~ 82 (107)
.+..+...++|+|..|+|||||+|.|++........ .+.... ...... .......++|+||....
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD----PTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC----CCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEECCEEEEEEEEECCCccch
Confidence 344556789999999999999999999765432211 111111 111111 12456789999997543
No 169
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=4.2e-08 Score=60.20 Aligned_cols=61 Identities=26% Similarity=0.200 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
+...|+|+|+.|+|||||++.+++......-....+.+... ...... ......++|+||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCch
Confidence 34689999999999999999998755321111111111111 111111 23467889999864
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=4.3e-10 Score=71.70 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG 50 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~ 50 (107)
.+++|+||||||||||+++|++...+..|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 5678999999999999999999998887754
No 171
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.68 E-value=9.2e-08 Score=57.13 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+...++++|++|+|||||++.+++...... ..+.........+ ......++|+||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCCh
Confidence 347899999999999999999976443211 1111122223333 46778899999864
No 172
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.68 E-value=1.6e-08 Score=69.62 Aligned_cols=67 Identities=33% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~ 84 (107)
.....++|+|..|+|||||+|.|++....... ...+.+.........+.....+.++||||+.+...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE 98 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc
Confidence 34478999999999999999999986543221 11222333333334442334789999999976543
No 173
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.67 E-value=4e-08 Score=58.70 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
..++|+|++|+|||||++.+++......... ..+............ .....++|+||....
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 4689999999999999999987554322211 111111112222211 235678899987643
No 174
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.67 E-value=2.5e-08 Score=69.59 Aligned_cols=62 Identities=26% Similarity=0.339 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+..|+|+|++|+|||||+|.|++........ ..+.+.........+ ....+.++||||+...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~ 294 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTAGLREA 294 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCCCcc
Confidence 4579999999999999999999875332211 111222222223333 5678899999998653
No 175
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.67 E-value=4.8e-08 Score=58.75 Aligned_cols=59 Identities=25% Similarity=0.230 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.+++........ .............+ .. ....++|+||..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 3679999999999999999998654322111 11111111122222 22 367889999864
No 176
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.67 E-value=1e-08 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
++ ..+|+|+||||||||+++|.....+.
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44 89999999999999999998766543
No 177
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.67 E-value=1.7e-07 Score=56.90 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~ 83 (107)
.++|+|++|+|||||++.+++....... ..+.+... ....+ . ...++|+||+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKI--IEIEW-K--NHKIIDMPGFGFMM 58 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSC--EEEEE-T--TEEEEECCCBSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCC--CCCcccee--EEEec-C--CEEEEECCCccccc
Confidence 6899999999999999999986532211 11111111 11222 2 56789999976543
No 178
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.67 E-value=9.7e-09 Score=65.19 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...+|..++|.|+|||||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467899999999999999999999986
No 179
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.67 E-value=6.7e-08 Score=59.57 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
..++|+|+.|+|||||++.|++...........+.+ .......... .....++|+||...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEEECCeEEEEEEEECCCchh
Confidence 679999999999999999999865332211111111 1111222211 34678899999743
No 180
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.66 E-value=5.3e-08 Score=58.77 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
...++|+|+.|+|||||++.+++...........+... ......+.. .....++|+||...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE--EEEEEEETTEEEEEEEEECCCSGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE--EEEEEEECCEEEEEEEEeCCCChh
Confidence 36799999999999999999987644322111111111 111122211 23678899999643
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.66 E-value=1.2e-08 Score=63.33 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.++.+++|+|+|||||||+++.|++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999998765
No 182
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.66 E-value=1e-07 Score=56.49 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
..++|+|++|+|||||++.+++........ ..... ........ .. ....++|+||....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~l~D~~G~~~~ 64 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD--PTIED-FYRKEIEV-DSSPSVLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCE-EEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC--CCcce-eEEEEEEE-CCEEEEEEEEECCCchhh
Confidence 679999999999999999998654322111 11111 11122222 22 34789999997644
No 183
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.66 E-value=1.3e-08 Score=67.64 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
-++++|+|+||||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999886
No 184
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.66 E-value=5.6e-08 Score=58.42 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
...++|+|..|+|||||++.|++.............+.. ........ .....++|+||...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~ 76 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQER 76 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE--EEEEEETTEEEEEEEEECTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCeEEEEEEEECCCChH
Confidence 468999999999999999999875532211111111111 11112211 23678899999654
No 185
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.66 E-value=7.7e-08 Score=63.55 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
...++|+|.+|+|||||++.+++...+... ...+.|.........+.......++|+||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 468999999999999999998876433221 1122233222233333245678899999975
No 186
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.65 E-value=7.8e-08 Score=58.76 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=39.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+...|+|+|..|+|||||++.+++....... ...+.........+ ......++|+||....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY 80 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH
Confidence 34578999999999999999999986522221 11121122233333 4567899999996543
No 187
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.65 E-value=5.5e-08 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....++|+|+.|+|||||++.+++..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34689999999999999999998754
No 188
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.65 E-value=1.2e-07 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
....|+|+|+.|+|||||+|.|++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 347899999999999999999998653
No 189
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.65 E-value=3.4e-08 Score=66.96 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+|++|+|||||+|+|++..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 190
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.64 E-value=4.4e-08 Score=58.43 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
..++|+|++|+|||||++.+++....... ................. .....++|+||...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 57999999999999999999865432211 11111111112222211 23578889998643
No 191
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.64 E-value=5.6e-08 Score=58.42 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
..++|+|+.|+|||||++.+++....... ............... .. ....++|+||...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEE-CCeEEEEEEEECCCcHH
Confidence 67999999999999999999864432211 111111121222222 22 3678899999643
No 192
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.64 E-value=5.7e-08 Score=59.39 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...++|+|+.|+|||||++.|++....... ....+.......... .. ....++|+||...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER 77 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence 367999999999999999999875433221 111222222222232 22 3578889999643
No 193
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.64 E-value=7.8e-08 Score=57.65 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...++|+|++|+|||||++.+++........ ..+.+.. .....+ .. ....++|+||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEE--EEEEEE-TTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccC-cccccee--EEEEEE-CCEEEEEEEEecCCCCc
Confidence 3679999999999999999999865432211 1111111 112222 22 2567899998754
No 194
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.64 E-value=8e-08 Score=58.67 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~ 80 (107)
+...|+|+|..|+|||||++.+++........ ................ .....++|+||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 34689999999999999999998654322111 1111111112222211 2467899999964
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.63 E-value=2e-08 Score=60.89 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.++.+++|+|+|||||||+++.|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999754
No 196
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.63 E-value=7.9e-08 Score=59.31 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~ 80 (107)
....++|+|+.|+|||||++.|++....... ................. .....++|+||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3468999999999999999999876533211 11111111112222211 2467889999864
No 197
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.63 E-value=7.5e-08 Score=59.64 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
.....|+|+|++|+|||||++.|++....... ....+.........+ .. ....++|+||...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHH
Confidence 34578999999999999999999865432211 111111111122222 22 4678999998643
No 198
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.63 E-value=2.9e-07 Score=55.32 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
....++|+|..|+|||||+|.+++....... . ............. .. ....++|+||....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~-~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--D-PTIEDSYTKICSV-DGIPARLDILDTAGQEEF 70 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--C-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcccc--C-CCcCceEEEEEEE-CCEEEEEEEEECCCchhh
Confidence 4478999999999999999999876322111 1 1111111122222 22 35778999997654
No 199
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.63 E-value=1.3e-07 Score=57.93 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
+......|+|+|..|+|||||++.+++........ ..+......... .......++|+||...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFE-KGRVAFTVFDMGGAKK 75 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEE-ETTEEEEEEEECCSGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEE-eCCEEEEEEECCCCHh
Confidence 34455789999999999999999999866443111 111112222233 2567889999998743
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.63 E-value=7.2e-08 Score=69.70 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCC--------------CCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAG--------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~ 79 (107)
..++.+++|+|++|+|||||++.|++.... ..|.+ ....+.........+ ......++||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCc
Confidence 356789999999999999999999954432 11211 011222222222333 4667899999998
Q ss_pred CCC
Q 038901 80 FDL 82 (107)
Q Consensus 80 ~~~ 82 (107)
.++
T Consensus 85 ~~f 87 (665)
T 2dy1_A 85 GDF 87 (665)
T ss_dssp GGG
T ss_pred cch
Confidence 654
No 201
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.63 E-value=1.1e-07 Score=58.37 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
...++++|++|+|||||++.+++...... ..+.........+ ......++|+||...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHH
Confidence 35899999999999999999987543211 1111111233333 456788999998753
No 202
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.62 E-value=1.1e-07 Score=58.52 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=34.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
.......|+|+|..|+|||||++.+++..... .. ..+.... ...... .. ....++|+||....
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~-~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT-EY---IPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCcccceeEEEEEE-CCEEEEEEEEECCCCHHH
Confidence 33445789999999999999999999765221 11 1111111 112222 33 25669999998643
No 203
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.62 E-value=1.8e-09 Score=66.02 Aligned_cols=27 Identities=11% Similarity=0.189 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
++++|+|+||||||||++.|+++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999998876
No 204
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.62 E-value=2e-07 Score=56.48 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCc--EEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQ--VVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~v~d~p~~~~~ 82 (107)
...++|+|++|+|||||+|.|++....... . ..+.......... ... ...++|+||....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY-D--PTIEDSYRKQVVI-DGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC-C--TTCCEEEEEEEEE-TTEEEEEEEEECCCC---
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC-C--CCchheEEEEEEE-CCcEEEEEEEECCCcHHH
Confidence 367999999999999999999865432211 1 1111111122222 232 3567999997544
No 205
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.62 E-value=1.3e-08 Score=70.17 Aligned_cols=60 Identities=30% Similarity=0.298 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..|+|+|++|+|||||+|.|++...+... ...+.+.........+ ......++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEE-CCceEEEEECCCCCC
Confidence 47999999999999999999986543221 1122232222233333 356788999999863
No 206
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.62 E-value=1.4e-07 Score=55.93 Aligned_cols=60 Identities=27% Similarity=0.357 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
...++++|+.|+|||||++.+++....... .. ............ .. ....++|+||....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~ 65 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDY-EP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDY 65 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCC---C
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCC-CC--CcceEEEEEEEE-CCEEEEEEEEECCCcchh
Confidence 367999999999999999999875432211 11 111111111222 22 35789999997543
No 207
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.62 E-value=7.5e-08 Score=58.75 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~ 81 (107)
...++|+|+.|+|||||++.|++......- ................ ......++|+||...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 368999999999999999999875432211 1111111111222221 124678889999753
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.61 E-value=1.3e-08 Score=61.57 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+.+++|+|++||||||+.+.|++...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987543
No 209
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.61 E-value=1.7e-07 Score=57.00 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....++|+|++|+|||||++.+++....... .+.........+ ......++|+||...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK 72 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHH
Confidence 3478999999999999999999976421110 111111122333 456778899998643
No 210
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.61 E-value=1.1e-08 Score=66.92 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=30.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
....+|++++|+|+||+|||||++.|++...+..|
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 45567899999999999999999999998776544
No 211
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.60 E-value=7.9e-08 Score=59.00 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
...|+|+|..|+|||||++.|++........ .............+.. .....++|+||...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVELRGKKIRLQIWDTAGQER 87 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 4579999999999999999999765332211 1111111122222211 23678899999643
No 212
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.60 E-value=7.5e-08 Score=58.41 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...++|+|+.|+|||||++.+++....... ............... .. ....++|+||..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 367999999999999999999875433221 111111111122222 22 367899999864
No 213
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.60 E-value=1.1e-07 Score=58.87 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
...|+|+|+.|+|||||++.|++........ .............+.. .....++|+||....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEECCEEEEEEEEeCCChHHH
Confidence 3679999999999999999998754332111 1111111112222211 236789999997543
No 214
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.60 E-value=1.8e-07 Score=55.30 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
..++++|+.|+|||||++.+++....... .. .... .......... .....++|+||....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~ 64 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-DP-TIED-SYRKQVVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-CT-TCCE-EEEEEEEETTEEEEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-CC-ccce-EEEEEEEECCEEEEEEEEECCCchhh
Confidence 56999999999999999999875432211 11 1111 1111122211 234678999997653
No 215
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.60 E-value=1.5e-07 Score=57.56 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+...++|+|+.|+|||||++.+++....... ..+.......... ......++|+||..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCH
Confidence 4568999999999999999999865432111 1111111222232 46678899999864
No 216
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=1.4e-07 Score=56.88 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...++|+|++|+|||||++.+++....... ................ .. ....++|+||...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER 72 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH
Confidence 367999999999999999999875542211 1111111111111122 22 3678889998653
No 217
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.59 E-value=9.1e-08 Score=58.98 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
.....|+|+|+.|+|||||++.+++......-....+.+. ......... .....++|+||....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEETTEEEEEEEEECTTCTTC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEECCEEEEEEEEECCCCcch
Confidence 3457899999999999999999987543211100011111 111122211 235789999997654
No 218
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.59 E-value=1.6e-07 Score=55.85 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEee-CCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLK-DGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~v~d~p~~~~~ 82 (107)
..++++|.+|+|||||++.+++....... ..+.... ....... ......++|+||....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHH
Confidence 57999999999999999999874332111 1111111 1111221 1235788999997654
No 219
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.59 E-value=1.9e-08 Score=75.16 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...+|++++|+|+||||||||+++|++
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999999994
No 220
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.59 E-value=1.4e-07 Score=57.34 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...|+|+|+.|+|||||++.|++..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998644
No 221
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.59 E-value=2.2e-08 Score=72.28 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=23.1
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCHHHHH
Q 038901 9 DWKPTSPSNGERTVVLLGRTGNGKSATG 36 (107)
Q Consensus 9 ~~~~~~~~~~~~~i~liG~nG~GKSTll 36 (107)
.........+|++++|+||||||||||+
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 3344555678899999999999999997
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.59 E-value=9.2e-09 Score=62.79 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
++..++|+||||+|||||+++|++...+..|
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999988765555
No 223
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.59 E-value=1.7e-07 Score=61.66 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
-..|+|+|..|+|||||+|.|+|...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 36799999999999999999999764
No 224
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.58 E-value=1.3e-07 Score=57.20 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
...++|+|++|+|||||++.+++......- ... ..... ...... .. ....++|+||....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-~~t-~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSY-DPT-IENTF-TKLITV-NGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC-CTT-CCEEE-EEEEEE-TTEEEEEEEEECCCCCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCC-ccccE-EEEEEE-CCEEEEEEEEeCCCchhh
Confidence 467999999999999999999843322111 111 11111 122222 33 35579999997643
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.58 E-value=1.8e-08 Score=62.69 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=25.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++.+++|+|++|||||||++.|.+...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45679999999999999999999987543
No 226
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.57 E-value=1.4e-07 Score=56.01 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.++++|++|+|||||++.+++...... ..+.......... ......++|+||...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK 56 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh
Confidence 589999999999999999976432211 1111111122332 456788999999753
No 227
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=1.9e-07 Score=57.20 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
....|+|+|.+|+|||||++.|++................ ....... .....++|+||....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR---QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE---EEEEETTEEEEEEEEECCGGGSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee---EEEEECCEEEEEEEEeCCChHHh
Confidence 3468999999999999999999874432211111111111 1111111 235788999997543
No 228
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.57 E-value=2.5e-07 Score=55.93 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
+...|+|+|+.|+|||||++.|++....... . ..+.......... .. ....++|+||....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~-~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--E-PTKADSYRKKVVL-DGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--C-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcC--C-CccceEEEEEEEE-CCEEEEEEEEECCCCccc
Confidence 3478999999999999999999865432211 1 1111111112222 22 35789999997644
No 229
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.57 E-value=6.3e-08 Score=58.59 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+...++|+|++|+|||||++.+++........ ..+. ......+ ......++|+||...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~----~~~~~~~-~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGF----NVETLSY-KNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTC----CEEEEEE-TTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCcc----ceEEEEE-CCEEEEEEECCCCHh
Confidence 345889999999999999999998644322111 1111 1122232 456778889998754
No 230
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.57 E-value=2.1e-08 Score=69.78 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+..++|+|++|+|||||+|.|++........ ..+.+.........+ ....+.++||||+...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRET 285 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC-------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccc
Confidence 4679999999999999999999864332211 111222111122333 5667889999998543
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.57 E-value=1.1e-07 Score=58.82 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
..++|+|++|+|||||++.+++....... .+.........+ ......++|+||...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHh
Confidence 57999999999999999999875432111 111111122333 456778889998653
No 232
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.56 E-value=2.9e-07 Score=56.63 Aligned_cols=61 Identities=26% Similarity=0.354 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
+...|+|+|+.|+|||||++.+++....... .. ............ .. ....++|+||....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-EP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDY 75 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-CC--ccceEEEEEEEE-CCEEEEEEEEcCCChhhh
Confidence 4478999999999999999999865432111 11 111111122222 22 36789999997654
No 233
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.56 E-value=1.3e-07 Score=57.94 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
...++|+|+.|+|||||++.+++...........+.. .......... .....++|+||...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEETTEEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEECCCchh
Confidence 4579999999999999999998754322111111111 1111222211 23678899998643
No 234
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.56 E-value=2.6e-08 Score=69.67 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC-CC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF-DL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~-~~ 82 (107)
+..|+|+|.+|+|||||+|.|++...+.... ..+.+.........+ ....+.++||||+. ..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSET 305 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEec-CCeEEEEEECCCccccc
Confidence 3679999999999999999999865332211 111222222233333 56778999999987 44
No 235
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.56 E-value=2.2e-07 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+...++|+|+.|+|||||+|.+++..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44789999999999999999998653
No 236
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.55 E-value=1.2e-07 Score=56.41 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD 81 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~ 81 (107)
..++|+|++|+|||||+|.+++....... ....+... ...... ......++|+||...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYD--RSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEETTEEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceE--EEEEECCEEEEEEEEECCCCcc
Confidence 57999999999999999999876543221 11111111 111111 123567889988654
No 237
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.54 E-value=7.1e-08 Score=58.58 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+...++|+|..|+|||||++.+++........ ..+. ......+ ......++|+||..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~----~~~~~~~-~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGS----NVEEIVI-NNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSS----SCEEEEE-TTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCce----eeEEEEE-CCEEEEEEECCCCH
Confidence 45789999999999999999999765421110 0111 1122232 45678889999874
No 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.54 E-value=1.9e-08 Score=70.83 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHH--HhCCcccccc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNS--ILGRRAFKAS 48 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~--l~g~~~~~~g 48 (107)
...+|++++|+|+||||||||+++ +.|+..+..|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g 70 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP 70 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 456789999999999999999999 6788776555
No 239
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.54 E-value=2.5e-08 Score=67.10 Aligned_cols=28 Identities=25% Similarity=-0.003 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.+.+++|+|++|||||||+|.|++...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4689999999999999999999985443
No 240
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.54 E-value=1.2e-07 Score=58.54 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGL 79 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~ 79 (107)
...|+|+|+.|+|||||++.|++........ .............. .. ....++|+||.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQ 84 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCc
Confidence 4689999999999999999998754322111 11111111112222 22 46788999985
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=2.8e-08 Score=59.34 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
+++.++|+|+||+|||||+++|++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999987754
No 242
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=2.5e-07 Score=56.35 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+...++|+|..|+|||||++.+++....... .+.........+ ......++|+||....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-----PTIGSNVEEIVI-NNTRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-----CCSCSSCEEEEE-TTEEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-----CCCccceEEEEE-CCEEEEEEECCCCHhH
Confidence 4478999999999999999999964432111 011111122233 4577889999997543
No 243
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.53 E-value=3.1e-07 Score=56.42 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=35.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
.+...++|+|+.|+|||||++.+++...... ..+.......... ......++|+||....
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKI 86 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhH
Confidence 3457899999999999999999986433211 1111111222333 5667889999997543
No 244
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.53 E-value=2.3e-08 Score=67.14 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
.|+|+|.+|+|||||+|.|++....... ....+.........+.....+.++|+||+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 5899999999999999999876533221 111222222223333223678899999964
No 245
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.53 E-value=6.3e-08 Score=60.37 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...|+|+|.+|+|||||+|.|++................. ........ ....++|+||...
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchh
Confidence 4689999999999999999998654322111111111111 11111111 4578999999754
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.52 E-value=2.3e-08 Score=62.70 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
..+|+.++|+|+||||||||++.|++...+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 446799999999999999999999966543
No 247
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.52 E-value=1.8e-07 Score=58.15 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.+++......- ..............+ .. ....++|+||..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 357999999999999999999865432111 111111111122222 22 357889999864
No 248
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1e-07 Score=58.20 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
....++|+|++|+|||||++.|++......- .....+.. ..+ ......++|+||....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA-----ADY-DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCcee-----eee-cCCeEEEEECCCCchH
Confidence 4468999999999999999999976532210 00011110 011 2345577788887654
No 249
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=4.6e-07 Score=55.62 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~ 81 (107)
.+...++|+|..|+|||||++.+++....... ........ ........ .....++|+||...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 34578999999999999999999875432211 11111111 11122211 24578899999765
No 250
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.51 E-value=3e-07 Score=56.01 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...|+++|..|+|||||++.|++....... .. ............ .. ....++|+||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DP--TIEDSYRKQVVI-DGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcccc-CC--ccceEEEEEEEE-CCEEEEEEEEECCChH
Confidence 358999999999999999999865432111 11 111111112222 22 347789999865
No 251
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.51 E-value=3.1e-08 Score=71.51 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 12 PTSPSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
......+|++++|+||||||||||+++|+
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 34445578999999999999999998764
No 252
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.50 E-value=3.2e-07 Score=56.97 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC--CcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD--GQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~v~d~p~~~ 80 (107)
+...++|+|.+|+|||||++.+++........ +.........+.. .....++|+||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEEecCCCccEEEEEECCCCh
Confidence 34689999999999999999998755322211 1111112223321 4578999999975
No 253
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.50 E-value=2e-07 Score=56.81 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.+...++++|++|+|||||++.+++....... . +.......... ......++|+||...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-P----TVGVNLETLQY-KNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-S----STTCCEEEEEE-TTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-C----CCceEEEEEEE-CCEEEEEEECCCCHh
Confidence 34578999999999999999999764432211 0 11111122333 466788999998643
No 254
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.49 E-value=8.6e-08 Score=66.08 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....++|+|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRK 235 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTC
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECCCcCc
Confidence 34689999999999999999999876532221 112222222223333 456789999999854
No 255
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.49 E-value=2.2e-07 Score=57.35 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....++|+|.+|+|||||++.+++..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998654
No 256
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.49 E-value=1.6e-07 Score=58.42 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.....++.+++|+|++||||||+.+.|.+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445567899999999999999999999875
No 257
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.48 E-value=3.8e-07 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++++|++|+|||||++.+++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4679999999999999999998543
No 258
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.48 E-value=1.8e-07 Score=56.24 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC--CcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD--GQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~v~d~p~~~~~ 82 (107)
+...++|+|++|+|||||++.+++......-....+.. .......+.. .....++|+||....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD--FFLRRITLPGNLNVTLQIWDIGGQTIG 69 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSS--EEEEEEEETTTEEEEEEEEECTTCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEE--EEEEEEEeCCCCEEEEEEEECCCCccc
Confidence 34679999999999999999998754321100000111 1112222211 256789999997643
No 259
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.48 E-value=3.8e-07 Score=56.10 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+..+...++|+|.+|+|||||++.+.+....... .....+.................++|+||....
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence 3445578999999999999999999986543321 111111110000010013356788999997553
No 260
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.47 E-value=6.9e-08 Score=64.37 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+++|+|+||||||||+++|.++..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988764
No 261
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3e-07 Score=57.67 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...|+|+|+.|+|||||++.|++........ .............+ .. ....++|+||...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccc
Confidence 3679999999999999999998754322111 01111111112222 22 4678999999754
No 262
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.46 E-value=2.8e-08 Score=70.48 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
..+|++++|+|+||||||||+++|++...+..|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 346799999999999999999999998776554
No 263
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=2.8e-07 Score=63.06 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.++|+|.+|+|||||+|.|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999875
No 264
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.45 E-value=1.6e-08 Score=68.99 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.....+| +++|+|+||||||||+++|.++..
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445677 999999999999999999976654
No 265
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.45 E-value=6.3e-07 Score=55.53 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.+...|+|+|.+|+|||||++.+++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999854
No 266
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.45 E-value=9.5e-08 Score=58.85 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=6.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
....|+|+|++|+|||||++.|++.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999876
No 267
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=4.1e-07 Score=56.37 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~ 82 (107)
...|+|+|..|+|||||++.+++........ ....... ...... .. ....++|+||....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVFENY-VADIEV-DGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCC--CcccceE-EEEEEE-CCEEEEEEEEECCCcHHH
Confidence 3579999999999999999998754332110 0011111 111222 22 35788999997543
No 268
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.45 E-value=2.2e-07 Score=65.93 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------------ccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--------------------ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
+-++++|+|+.++|||||...|+-..... .-+..++.+.......+.| +.....++|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 34789999999999999999886221110 0012234444444455666 78899999999
Q ss_pred CCCCCC
Q 038901 78 GLFDLS 83 (107)
Q Consensus 78 ~~~~~~ 83 (107)
|..++.
T Consensus 109 GHvDF~ 114 (548)
T 3vqt_A 109 GHQDFS 114 (548)
T ss_dssp CGGGCS
T ss_pred CcHHHH
Confidence 999884
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.44 E-value=1.3e-07 Score=58.85 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++..++|+|++|||||||++.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567899999999999999999998654
No 270
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.44 E-value=4.1e-07 Score=55.66 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.....++|+|.+|+|||||++.+++...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3446899999999999999999987653
No 271
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.43 E-value=2.8e-07 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...|+|+|+.|+|||||++.|++..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999754
No 272
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=2.2e-07 Score=57.90 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....++|+|++|+|||||++.|++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=61.90 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccc
Q 038901 22 VVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
++|+||||+|||||+++|++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999987653
No 274
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.42 E-value=8.1e-07 Score=57.88 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
....|+|+|.+|+|||||+|.|+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999998764
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=1.7e-07 Score=58.04 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.....++.+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344456789999999999999999999754
No 276
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.42 E-value=9.5e-08 Score=65.72 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~ 47 (107)
.+.+++|+||||||||||+++|+++..+.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 468999999999999999999998776543
No 277
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.42 E-value=1.6e-07 Score=55.99 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 038901 20 RTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|+||||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999986
No 278
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.42 E-value=1.5e-07 Score=63.66 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+ .++|+||||||||||+++|+
T Consensus 23 ~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHH
Confidence 45 68899999999999999998
No 279
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.42 E-value=1.1e-07 Score=69.96 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+|++++|+||||+|||||+++|++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 567999999999999999999998864
No 280
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.41 E-value=1.2e-07 Score=59.50 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+.+++|+|++||||||+.+.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998654
No 281
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=6.1e-08 Score=59.36 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+|+|+|+.|+|||||++.+++..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 579999999999999999998643
No 282
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.41 E-value=5.1e-07 Score=54.88 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.+++......- .. ...... ....... ......++|+||..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~-t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENY-TASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEE-EEEEECSSCEEEEEEEEECCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC-ccceeE-EEEEEECCEEEEEEEEECCCCh
Confidence 467999999999999999999875432111 11 011111 1111211 12457889999864
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.41 E-value=8.2e-08 Score=63.30 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.++.+++|+|+||+||||++..|++...+..|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999987765444
No 284
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.40 E-value=3.5e-07 Score=63.41 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.....++++|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRK 255 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCc
Confidence 345789999999999999999999875433221 111222221222333 556789999999754
No 285
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.40 E-value=2e-07 Score=57.91 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.+++|+|++||||||+.+.|.++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999873
No 286
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.40 E-value=8.8e-07 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+...++|+|.+|+|||||++.+++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34689999999999999999999754
No 287
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.39 E-value=6e-07 Score=60.88 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
+++++|..++|||||++.|+ ..| .+.........+ ......++||||..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~g-----iTi~~~~~~~~~-~~~~i~iiDtPGh~~f 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKG-----TSSDITMYNNDK-EGRNMVFVDAHSYPKT 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEE-----EESSSEEEEECS-SSSEEEEEECTTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCC-----EEEEeeEEEEec-CCeEEEEEECCChHHH
Confidence 89999999999999999998 122 222122222333 4567899999998765
No 288
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.39 E-value=6.1e-07 Score=55.36 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++|+|..|+|||||++.+++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 5799999999999999999987543
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.38 E-value=1.6e-07 Score=62.24 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
...++.+++|+|+||+||||++..|++...+..+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999988765543
No 290
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=53.62 Aligned_cols=26 Identities=42% Similarity=0.578 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....|+|+|..|+|||||++.+++..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 44689999999999999999998654
No 291
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.38 E-value=9.9e-07 Score=55.09 Aligned_cols=59 Identities=17% Similarity=0.055 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEee-CCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~v~d~p~~~ 80 (107)
....|+|+|..|+|||||++.+++......- ..+.... ....... ......++|+||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 4578999999999999999999865432111 1111111 1111111 23467788999854
No 292
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.37 E-value=1.5e-07 Score=69.07 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS 48 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~-~~~g 48 (107)
|++++|+||||+|||||+++|+++.. +..|
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G 606 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVG 606 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence 78999999999999999999998764 4445
No 293
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.37 E-value=1.8e-06 Score=58.04 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..|+|+|..|+|||||+|.|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 5799999999999999999999754
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.36 E-value=1.5e-06 Score=53.04 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
+..+...++|+|.+|+|||||++.+++......- ..... .......+ .. ....++|++|...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~t~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGG---RFKKEIVV-DGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CTTCE---EEEEEEEE-TTEEEEEEEEECSSSCC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCCcc---eEEEEEEE-CCEEEEEEEEECCCChh
Confidence 3445578999999999999999888764432111 11111 11122222 23 3456789998754
No 295
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.36 E-value=5.2e-07 Score=55.79 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...|+|+|..|+|||||++.+++......- ..............+ .. ....++|+||...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER 90 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence 367999999999999999999865432110 000111111122222 22 4678999999743
No 296
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.36 E-value=1.8e-06 Score=53.50 Aligned_cols=62 Identities=13% Similarity=-0.024 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL 82 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~ 82 (107)
....++|+|..|+|||||++.+++......-........ ....... ......++|+||....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEECSSCEEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEECCEEEEEEEEECCCcHHH
Confidence 447899999999999999999986442211100000000 1111221 1246788999997543
No 297
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.35 E-value=2.2e-07 Score=58.76 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
..+|.+++|+|+||+|||||++.|++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45679999999999999999999998
No 298
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.35 E-value=7.1e-07 Score=61.91 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+--+|+|+|+.++|||||||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4478999999999999999999974
No 299
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.35 E-value=1.9e-07 Score=58.43 Aligned_cols=62 Identities=27% Similarity=0.201 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh-CCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
...+|+|+|..|+|||||++.++ +....... ...+.+.......... ......++|+||...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEE-TTTTEEEEEEEEEETT-EEEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECC-EEEEEEEEeCCChHH
Confidence 34689999999999999999844 33221111 1111222111111110 134678889998643
No 300
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.35 E-value=1.7e-06 Score=59.81 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+.....+++++|..++|||||++.|++.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445678999999999999999999654
No 301
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.34 E-value=1.2e-06 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+...++|+|.+|+|||||++.+++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999998754
No 302
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.34 E-value=1.5e-06 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
...++|+|.+|+|||||++.|.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 467999999999999999999876543
No 303
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.2e-06 Score=53.50 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeC-CcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKD-GQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~v~d~p~~~~~ 82 (107)
...++|+|+.|+|||||++.+++......- ..+.... ........ .....++|+||....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSC----CCSSCCCEEEEEESSSCEEEEEEECCCCSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCcch
Confidence 368999999999999999999865322110 0111000 11122211 246778999997543
No 304
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.34 E-value=2.7e-07 Score=65.16 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--ccC------------------CCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASA------------------GSSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~------------------~~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
.-.+++|+|+.|+|||||++.|+...... .|. ...+.+.........+ ......++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 34789999999999999999996221110 000 0011122222233343 56788999999
Q ss_pred CCCCC
Q 038901 78 GLFDL 82 (107)
Q Consensus 78 ~~~~~ 82 (107)
|..++
T Consensus 91 G~~df 95 (528)
T 3tr5_A 91 GHADF 95 (528)
T ss_dssp CSTTC
T ss_pred CchhH
Confidence 98765
No 305
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.34 E-value=1.3e-06 Score=58.27 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
...|+|+|.+|+|||||++.|++...... ..+.......... ......++||||....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI 222 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhH
Confidence 34799999999999999999987543211 1122222222333 5667889999986543
No 306
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.34 E-value=8.4e-07 Score=55.17 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEee-CCcEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLK-DGQVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~-~~~~~~v~d~p~~~ 80 (107)
...++|+|++|+|||||++.+++......- ..+..... ...... ......++|+||..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 467999999999999999999875432211 11111111 112221 12467889999864
No 307
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.33 E-value=2.3e-07 Score=57.49 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
.+++|+|++||||||+.+.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 308
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.33 E-value=3.9e-07 Score=55.13 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF 80 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~ 80 (107)
...++|+|+.|+|||||++.+++......- ..............+ .. ....++|+||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCCh
Confidence 367999999999999999999865322110 001111111122222 22 467889999864
No 309
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.33 E-value=3.8e-07 Score=68.14 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHH
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSI 39 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l 39 (107)
..+|++++|+||||+||||||++|
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 346799999999999999999999
No 310
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.32 E-value=1.3e-06 Score=61.80 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--ccCC------------------CCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASAG------------------SSGVTTTCEMKTTVLKDGQVVNVIDTP 77 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~------------------~~~~~~~~~~~~~~~~~~~~~~v~d~p 77 (107)
+..+++|+|+.|+|||||++.|+...... .|.. ..+.+.........+ ......++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 34789999999999999999998542211 0000 011111111122333 56788999999
Q ss_pred CCCCC
Q 038901 78 GLFDL 82 (107)
Q Consensus 78 ~~~~~ 82 (107)
|..++
T Consensus 91 G~~df 95 (529)
T 2h5e_A 91 GHEDF 95 (529)
T ss_dssp CSTTC
T ss_pred CChhH
Confidence 99765
No 311
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.32 E-value=3.1e-07 Score=57.25 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=24.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...+|.+++|+|+||+|||||++.|++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345679999999999999999999987
No 312
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.32 E-value=8.7e-07 Score=61.87 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..+++++|..++|||||++.|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
No 313
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.32 E-value=6.5e-07 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....++|+|+.|+|||||++.+++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 314
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.31 E-value=9.5e-07 Score=62.70 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
....|+|+|..|+|||||+|.|++...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence 346899999999999999999999764
No 315
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.31 E-value=4.8e-07 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+|..++|+|++||||||+.+.|.+..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 316
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.31 E-value=1.6e-07 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+||||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999987
No 317
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.31 E-value=2.8e-07 Score=62.02 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+|.+++|+|+||||||||++.|++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999999876
No 318
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.31 E-value=2.8e-06 Score=61.72 Aligned_cols=64 Identities=31% Similarity=0.456 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh---CCcccc----ccC---------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL---GRRAFK----ASA---------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~---g~~~~~----~g~---------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
.-.+++|+|+.|+|||||++.|+ +..... .+. .....+.........+ ......++||||..+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 44789999999999999999998 322110 000 0112222222233343 567889999999976
Q ss_pred C
Q 038901 82 L 82 (107)
Q Consensus 82 ~ 82 (107)
+
T Consensus 90 f 90 (691)
T 1dar_A 90 F 90 (691)
T ss_dssp C
T ss_pred h
Confidence 5
No 319
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.31 E-value=3.2e-07 Score=62.37 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+++.++|+||||+|||||+++|++..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44567899999999999999999999753
No 320
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.30 E-value=2e-06 Score=62.58 Aligned_cols=65 Identities=32% Similarity=0.473 Sum_probs=39.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccC-C--------CCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILG---RRAFK----ASA-G--------SSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g---~~~~~----~g~-~--------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
..-.+++|+|+.|+|||||++.|++ ..... .+. . ..+.+.........+ ......++||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 3457899999999999999999983 32110 000 0 111222222223333 56788999999997
Q ss_pred CC
Q 038901 81 DL 82 (107)
Q Consensus 81 ~~ 82 (107)
++
T Consensus 87 df 88 (693)
T 2xex_A 87 DF 88 (693)
T ss_dssp SC
T ss_pred ch
Confidence 65
No 321
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.30 E-value=3.2e-07 Score=62.02 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
....++ +++|+||||+|||||+++|.+
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 344456 999999999999999999986
No 322
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.30 E-value=2.2e-06 Score=62.30 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.+..|+|+|..|+|||||+|+|+|....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~ 95 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLL 95 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4578999999999999999999997643
No 323
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.30 E-value=4.4e-07 Score=59.68 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
..++.+|+|+|++|||||||++.|.+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345689999999999999999999887754
No 324
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.29 E-value=3.2e-07 Score=59.61 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+|.+++|+|+||+|||||++.|++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999998744
No 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.29 E-value=1.6e-06 Score=60.50 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~ 81 (107)
....++|+|.+|+|||||+|.|++..... ...+.........+ ....+.++||||...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTY-KNVKFNVWDVGGQDK 378 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEES-SSCEEEEEEECCCGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccceeEEEEEe-CCEEEEEEECCCcHH
Confidence 34689999999999999999998765321 11222223333333 566889999999644
No 326
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.28 E-value=2.9e-07 Score=68.63 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...+|++++|+|||||||||||++|++
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 345679999999999999999999864
No 327
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.28 E-value=2.5e-07 Score=62.02 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=25.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++.+++|+|++|+|||||++.|++...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999986543
No 328
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.27 E-value=8.8e-08 Score=59.04 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~ 81 (107)
...|+|+|++|+|||||+|.|++........ ...+.........+ .. ....++|+||...
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence 3689999999999999999998754322110 01111111122222 22 3578889998643
No 329
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.26 E-value=5.7e-07 Score=57.53 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcc
Q 038901 22 VVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~ 44 (107)
++|+||||+|||||+++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998653
No 330
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.26 E-value=4.5e-07 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.++ ..+|+|+||||||||+++|..+.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 345 89999999999999999998554
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.26 E-value=9.9e-07 Score=53.91 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
....++..++|+|++||||||+.+.|+....
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445679999999999999999999986653
No 332
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.5e-06 Score=62.39 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+...|+|+|..++|||||++.|++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 445789999999999999999998763
No 333
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=2.6e-06 Score=53.45 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...|+|+|.+|+|||||+|.+++..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3679999999999999999999743
No 334
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.24 E-value=3.2e-07 Score=69.08 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
|++++|+||||+|||||+++| |+...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 799999999999999999999 77543
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.24 E-value=7.2e-07 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 038901 20 RTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999985
No 336
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.23 E-value=8.5e-07 Score=60.58 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
....+++++|+.++|||||++.|++.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 44578999999999999999999873
No 337
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.23 E-value=7.9e-07 Score=59.45 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 038901 20 RTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|+||||||||||+.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999884
No 338
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.23 E-value=7e-07 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..+|+|+|++||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 339
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.23 E-value=7.5e-07 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcc
Q 038901 22 VVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~ 44 (107)
++|+||||+|||||+++|++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998654
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.22 E-value=8.9e-07 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+..++|+|++||||||+.+.|+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999997
No 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.22 E-value=6.4e-07 Score=59.67 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
.....++.+++|+|+||+||||++..|++......+
T Consensus 99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 334567799999999999999999999987765443
No 342
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.21 E-value=7.3e-07 Score=57.50 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+++++|+|++||||||+.+.|++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999976
No 343
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.20 E-value=1.9e-06 Score=58.82 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..+++++|..++|||||++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 467999999999999999999874
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.18 E-value=1.1e-06 Score=53.73 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++|+|++|||||||++.|++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 6799999999999999999987643
No 345
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.18 E-value=1.5e-06 Score=53.46 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..++|+|.+|+|||||+|.+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999999863
No 346
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.18 E-value=9.5e-07 Score=60.94 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..+++++|..++|||||++.|+..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999753
No 347
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.18 E-value=3.3e-06 Score=59.06 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~ 80 (107)
+..+++++|..++|||||++.|++..... ......+.+.........+ ......++|+||..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH
Confidence 34689999999999999999999865110 0011122333333333333 55688999999963
No 348
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.17 E-value=1.2e-06 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 349
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.17 E-value=5.8e-07 Score=63.30 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFK 46 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~ 46 (107)
...+|.+++|+|+||+|||||++.|++...+.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 44578999999999999999999999887653
No 350
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.17 E-value=1.3e-05 Score=58.45 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.-.+++|+|+.|+|||||++.|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999964
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.16 E-value=1.6e-06 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..|.|+|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999764
No 352
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.15 E-value=5.3e-06 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+..+++++|+.++|||||++.|+|..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCc
Confidence 34679999999999999999999764
No 353
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.15 E-value=1.3e-06 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~ 43 (107)
-|+|+||+|+|||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997543
No 354
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.15 E-value=6.6e-06 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+..+++++|..|+|||||+|.|++..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999854
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.14 E-value=2.2e-06 Score=52.45 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..++.+++|+|++||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345688999999999999999999754
No 356
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.13 E-value=1.1e-05 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+..+++++|..++|||||++.|++..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44789999999999999999999764
No 357
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.11 E-value=9e-07 Score=58.27 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
++++++++|+||+||||++..|++......+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6799999999999999999999988765443
No 358
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.11 E-value=2e-06 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+..|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 359
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.11 E-value=6.4e-06 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...+++++|..++|||||++.|++.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHhh
Confidence 3468999999999999999999754
No 360
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.11 E-value=4.1e-07 Score=64.41 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..+++|+|+.++|||||++.|.+....... ..+.+.........+.......++||||...+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPSGEKITFLDTPGHAAF 65 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCCCCEEEEEECCChHHH
Confidence 367899999999999999999865432221 11122211112222223346788999997544
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.10 E-value=2.7e-06 Score=51.92 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.+..|.|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 362
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.10 E-value=2e-06 Score=51.40 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 038901 20 RTVVLLGRTGNGKSATGNSI 39 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l 39 (107)
.+|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 363
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.09 E-value=2.6e-06 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..++..++|+|++||||||+.+.|.....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999999987654
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.09 E-value=2.8e-06 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
+...+..+.|.|++||||||+.+.|+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344568999999999999999999964
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.09 E-value=2.9e-06 Score=58.10 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHH--hCCccc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSI--LGRRAF 45 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l--~g~~~~ 45 (107)
...+|.++.|+|+||+|||||+..| .+..++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 3456899999999999999999944 455544
No 366
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.07 E-value=1e-06 Score=66.05 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+....|++++|+|+||||||||++.|+
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4455678999999999999999999864
No 367
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.07 E-value=3e-06 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
..++.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999975
No 368
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.07 E-value=3e-06 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.07 E-value=3.8e-06 Score=53.33 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
...+..++|.|++||||||+++.|......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 447799999999999999999999876543
No 370
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.06 E-value=5.2e-06 Score=59.53 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc----c---------CCCCceeeEeeeeeEEeeC----CcEEEEEeCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA----S---------AGSSGVTTTCEMKTTVLKD----GQVVNVIDTPGLFD 81 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~----g---------~~~~~~~~~~~~~~~~~~~----~~~~~v~d~p~~~~ 81 (107)
-.+++|+|+.++|||||++.|+....... + ....+.+.........|.. .....++||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 36899999999999999999975321100 0 0011223222222333321 25778999999876
Q ss_pred C
Q 038901 82 L 82 (107)
Q Consensus 82 ~ 82 (107)
+
T Consensus 84 F 84 (599)
T 3cb4_D 84 F 84 (599)
T ss_dssp G
T ss_pred H
Confidence 5
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.06 E-value=2.8e-06 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..++|+|++|||||||.+.|+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 46899999999999999999754
No 372
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.06 E-value=1.8e-05 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++++|.+|+|||||++.+++..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC
Confidence 4689999999999999999998543
No 373
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.05 E-value=2.9e-06 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~ 42 (107)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999863
No 374
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.05 E-value=1e-05 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..|+++|..++|||||+|+|+|...
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 5799999999999999999999754
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.05 E-value=3.5e-06 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+.+|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.04 E-value=3.8e-06 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..+|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999999864
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.04 E-value=4.2e-06 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..+..|+|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999753
No 378
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.30 E-value=6.1e-07 Score=55.37 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+...++|+|.+|+|||||++.+++..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 345789999999999999999998643
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.04 E-value=2.5e-06 Score=54.79 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....+..+.|+|++||||||+.+.|....
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34456899999999999999999997643
No 380
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.04 E-value=9.3e-06 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
-.+++|+|+.++|||||++.|+.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999975
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.04 E-value=3.8e-06 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
++..|+|.|+.||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 382
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.03 E-value=3.6e-06 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
...|.|+|++||||||+.+.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 383
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.03 E-value=2.2e-06 Score=61.31 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...+|+|+|..++|||||++.|++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 384
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.03 E-value=1.2e-05 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
..|+|+|.+|+|||||++.++.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 5799999999999999998874
No 385
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.03 E-value=4.2e-06 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
++..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999754
No 386
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.02 E-value=9.3e-06 Score=60.25 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
-..++|+|+.|+|||||++.|+..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999864
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.02 E-value=4.1e-06 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.++..|+|+|++||||||+.+.|+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 388
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.01 E-value=1.2e-06 Score=61.51 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
..+++++|+.++|||||++.|.+..... +. ..+.+.........+ ......++||||...+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e-~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVAS-GE-AGGITQHIGAYHVET-ENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSB-TT-BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCcc-cc-CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHH
Confidence 4679999999999999999998643221 11 011111111122222 3456788999998654
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.01 E-value=4.5e-06 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
++..|+|+|++||||||+.+.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.01 E-value=3.3e-06 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~ 42 (107)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 391
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.00 E-value=1.6e-05 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+|+|+|.+|+|||||+|.+++..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999999864
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.00 E-value=5.1e-06 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+..|.|+|++||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 393
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.00 E-value=1.1e-06 Score=65.70 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+..+.|++++|+|+||||||||++.|+
T Consensus 644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3455678999999999999999999864
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=5.2e-06 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+..|+|+|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998854
No 395
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=2.6e-06 Score=56.67 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC-Ccccccc
Q 038901 21 TVVLLGRTGNGKSATGNSILG-RRAFKAS 48 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g-~~~~~~g 48 (107)
.+.|.||+|+||||++++|++ +..+..|
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 399999999999999999998 5555444
No 396
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.98 E-value=2.3e-06 Score=60.62 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g 48 (107)
++..++|+||||+|||||+++|++...+..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5789999999999999999999987755433
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.98 E-value=4.8e-06 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..|+|.|++||||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997643
No 398
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.98 E-value=8.3e-06 Score=50.32 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
......+|+|.|++||||||+.+.|+.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999998864
No 399
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.98 E-value=5.5e-06 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.++..|+|.|+.||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999974
No 400
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.97 E-value=8.3e-07 Score=65.70 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHH-HhCCc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNS-ILGRR 43 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~-l~g~~ 43 (107)
.+..+.|++++|+|+||||||||++. |++..
T Consensus 517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 34456789999999999999999996 66543
No 401
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.97 E-value=5.2e-06 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|..++|+|+||+|||||+..++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34567999999999999999966554
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.97 E-value=5.4e-06 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 038901 19 ERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~ 40 (107)
..+++|.|++||||||+.+.|+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999997
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.97 E-value=1.6e-06 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.|+|.|++||||||+++.|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 404
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.96 E-value=6e-06 Score=50.31 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+++|+|++|||||||++.|+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 6799999999999999999987643
No 405
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.95 E-value=2.7e-06 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...++++|..++|||||++.|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999853
No 406
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.94 E-value=2.9e-06 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.+..+++++|..++|||||++.|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 3446899999999999999999863
No 407
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.93 E-value=9.1e-06 Score=58.62 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCcccc----ccC---------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 20 RTVVLLGRTGNGKSATGNSIL---GRRAFK----ASA---------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~---g~~~~~----~g~---------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
++|+|+|+-++|||||...|+ |.+... .|. ..++.+.........| +.....++||||..++
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 579999999999999999885 333221 110 0112333333344455 5677899999999988
No 408
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.93 E-value=5e-05 Score=55.37 Aligned_cols=66 Identities=33% Similarity=0.421 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc-------ccc---------CCCCceeeEeeeeeEEee------CCcEEEEE
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRAF-------KAS---------AGSSGVTTTCEMKTTVLK------DGQVVNVI 74 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~-------~~g---------~~~~~~~~~~~~~~~~~~------~~~~~~v~ 74 (107)
.+-++++|+|+-++|||||...|+-.... ..| +..++.+.........|. ......++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34578999999999999999988632211 011 122334444443444442 14688999
Q ss_pred eCCCCCCC
Q 038901 75 DTPGLFDL 82 (107)
Q Consensus 75 d~p~~~~~ 82 (107)
||||..++
T Consensus 91 DTPGHvDF 98 (709)
T 4fn5_A 91 DTPGHVDF 98 (709)
T ss_dssp CCCSCTTC
T ss_pred eCCCCccc
Confidence 99999998
No 409
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.93 E-value=9.5e-06 Score=50.07 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
....+..|+|+|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999999864
No 410
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.93 E-value=5.1e-06 Score=59.44 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~ 47 (107)
.+..++|+||||+|||||+++|++...+..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 346899999999999999999999886543
No 411
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.92 E-value=7.1e-06 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
-..++|+|+.|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999865
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.91 E-value=6.3e-06 Score=55.71 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 038901 20 RTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~ 40 (107)
-..+|+|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999986
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.90 E-value=7.8e-06 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
++..|+|+|++||||||+.+.|+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999973
No 414
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.90 E-value=8.4e-06 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+.+|+|+|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998643
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.89 E-value=7.7e-06 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998643
No 416
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.88 E-value=5.9e-06 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=16.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
++..|.|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999863
No 417
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.88 E-value=8.9e-06 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
+|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.87 E-value=1.5e-05 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
..+|+|.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.86 E-value=9.2e-06 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+.|+||+|+|||||+++|++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 458999999999999999998754
No 420
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.86 E-value=1.1e-05 Score=60.32 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHH
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATG 36 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll 36 (107)
....+.|++++|+|+||||||||+
T Consensus 604 sl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 604 DVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHH
T ss_pred ceEEcCCcEEEEEccCCCChhhhH
Confidence 344557899999999999999997
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.85 E-value=1.4e-05 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
++.+|+|+|++||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 422
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.85 E-value=1.1e-05 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
+|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.84 E-value=1.2e-05 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.|+|.|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997543
No 424
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.84 E-value=1.4e-05 Score=49.96 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..+++|+|..|+|||||++.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 425
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.83 E-value=1.4e-05 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+..|.|+|++||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.82 E-value=1e-05 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
.+|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.82 E-value=1.1e-05 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
.+|+|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.82 E-value=1.3e-05 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
.++|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 429
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.82 E-value=1.4e-05 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 430
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.80 E-value=1.5e-05 Score=57.11 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+++|+|+.++|||||++.|++..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 679999999999999999998653
No 431
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.79 E-value=1.4e-05 Score=59.00 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+..++|+||+|+|||||+++|++...
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45568899999999999999999998764
No 432
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.79 E-value=3.5e-05 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~ 40 (107)
...+|+|.|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 433
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.79 E-value=1.6e-05 Score=49.00 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~ 42 (107)
+++|.|++||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999663
No 434
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=6e-06 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
+.+++++|++|+||||++..|++....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999866543
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.78 E-value=1.8e-05 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
..+++|.|..||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 436
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=9.4e-06 Score=56.01 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~ 47 (107)
++.+++++|++|+||||++..|++......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999998766543
No 437
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.77 E-value=2.8e-05 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
++.+++++|++|+||||++..|+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999985443
No 438
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.76 E-value=1.7e-05 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038901 19 ERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g 41 (107)
+..|+|+|++||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999954
No 439
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.75 E-value=2.2e-05 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
...+|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
No 440
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=2.1e-05 Score=51.61 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+..+.|.||+|+|||||+++|++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345789999999999999999998754
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.75 E-value=3.2e-05 Score=48.86 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...+.++|.|+||+||||+|..+.|+..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3345578999999999999999988644
No 442
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.74 E-value=2.4e-05 Score=53.63 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=26.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+..+|++++|+|++|+|||||++.|++..
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3466789999999999999999999998754
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.74 E-value=2.1e-05 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 444
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.74 E-value=2.1e-05 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcc
Q 038901 22 VVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+.|+||||+|||||+++|++...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998653
No 445
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.74 E-value=4e-06 Score=58.99 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.-.+| ..+|+|+||||||||+.+|...
T Consensus 57 ~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp ECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34445 8899999999999999999544
No 446
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.73 E-value=1.8e-05 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~~ 45 (107)
.+..++|+|++|+||||+++.|+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4577999999999999999999876544
No 447
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.73 E-value=2e-05 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038901 21 TVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g 41 (107)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 448
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.73 E-value=2.8e-05 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...+++|+|++|+|||||++.|+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 449
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=2.3e-05 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999976543
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.73 E-value=1.2e-05 Score=52.85 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..+|+|.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998753
No 451
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.72 E-value=5.6e-05 Score=57.98 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.+..+|+++|..++|||||++.|++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 44578999999999999999999864
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.72 E-value=2.8e-05 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.+..|.|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999964
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=2.6e-05 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..+.|.|++|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999986543
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.71 E-value=3.5e-05 Score=51.69 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+..++|+||+|+|||||...|+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998764
No 455
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=3.1e-05 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+.|.|++|+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999997654
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.69 E-value=2.7e-05 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
...+++|+|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998653
No 457
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=1.7e-05 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcc
Q 038901 22 VVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 22 i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+.|.||+|+||||+++++++...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999988753
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.68 E-value=2.9e-05 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038901 20 RTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g 41 (107)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 459
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.68 E-value=2.9e-05 Score=52.43 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..+|.++.|.||+|+|||||+..++....
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34679999999999999999999886543
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=3.9e-05 Score=50.09 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+...+.|+||+|+||||++++|+....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 346799999999999999999987654
No 461
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.67 E-value=3.4e-05 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+.|.||+|+|||||+++|++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998754
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.67 E-value=4.7e-05 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.....|.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999754
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.65 E-value=4.4e-05 Score=47.77 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.+..++|+|++|+|||||...|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35779999999999999999997653
No 464
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.64 E-value=3.6e-05 Score=49.18 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
..+.....++..|+|.|++||||||+++.|.....
T Consensus 18 ~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 18 LYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp --------CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred cccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444455678999999999999999999976543
No 465
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.64 E-value=0.00014 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.+-.+|+|+|+.++|||+|+|.|++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 3447899999999999999998763
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.63 E-value=5.6e-05 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+|++|+||||+.++|++..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 459999999999999999998754
No 467
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=3.3e-05 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+..+.|.|++|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999998754
No 468
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.62 E-value=7.2e-05 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CceEEEEEcCC---------CCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRT---------GNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~n---------G~GKSTll~~l~g 41 (107)
....|+|+|.+ |+|||||++.+++
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 34689999999 9999999999998
No 469
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.62 E-value=4.1e-05 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 038901 18 GERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.++.++++|++||||||++..++
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 35789999999999999877654
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.62 E-value=4.7e-05 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...++|+||+|||||||...|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36789999999999999999986543
No 471
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.61 E-value=0.00012 Score=48.93 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~ 82 (107)
++.|+|.+|+|||||++.+.+...+... .....+........ .......++||+|...+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~-~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDT-LYLESTSNPSLEHF--STLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGG-TTCCCCCSCCCEEE--CSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCcc-ceecCeeeeeeEEE--ccEEEEEEEECCCchhc
Confidence 3789999999999999988765433211 01111111111111 12356788899887654
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.61 E-value=4.1e-05 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..|+|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999987654
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.60 E-value=4.6e-05 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038901 21 TVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~ 42 (107)
++.|+||+||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988754
No 474
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.60 E-value=4.9e-05 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 21 TVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 21 ~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999987653
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.58 E-value=5.2e-05 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998654
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.58 E-value=6e-05 Score=47.38 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+|..|+|.|+.||||||+++.|....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999997544
No 477
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.57 E-value=4e-05 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+.|.|++|+|||||++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999987654
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.56 E-value=7.3e-05 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999997544
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=6.4e-05 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+..|+|.|..||||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998654
No 480
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.55 E-value=5.7e-05 Score=52.75 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 15 PSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+..+|.+++|+|++|+|||||++.|+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 334678999999999999999998876543
No 481
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.54 E-value=6.6e-05 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....+.|.||+|+|||||+++|+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999998654
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.53 E-value=5.2e-05 Score=48.19 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
.+|..|+|.|++||||||+++.|.....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999976543
No 483
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.51 E-value=0.00011 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 038901 17 NGERTVVLLGRTGNGKSATGNSIL 40 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~ 40 (107)
.+..+|+|+|++|+||||+++.|+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999999
No 484
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.51 E-value=5.6e-05 Score=49.86 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
+..+.|.||+|+|||||+++|+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998755
No 485
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.50 E-value=6.3e-05 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
.+++|+|++||||||+.+.|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998653
No 486
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.49 E-value=9.1e-05 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
....+.|.||+|+||||++++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33568999999999999999997643
No 487
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.49 E-value=0.00013 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~ 42 (107)
+..+++++|++|+||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999999999999843
No 488
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.49 E-value=7.2e-05 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g 41 (107)
..+|.++.|.|++|+|||||+..++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999999877764
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.49 E-value=4.7e-05 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.++..|+|.|..||||||+.+.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456889999999999999999987654
No 490
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.48 E-value=8.5e-05 Score=46.72 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+|..|.|-|+.||||||+++.|.....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999976543
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.48 E-value=7.6e-05 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+++|+|++|+||||+++.|++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 492
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.46 E-value=5.4e-05 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
.-+.|+||+|+|||||+++|++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348899999999999999998754
No 493
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.46 E-value=0.00011 Score=46.52 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
...+..|+|.|..||||||+++.|.....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999999976554
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.45 E-value=9.2e-05 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038901 20 RTVVLLGRTGNGKSATGNSILGR 42 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~ 42 (107)
..++|+||+|+|||||...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 67899999999999999988754
No 495
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.45 E-value=9.2e-05 Score=45.94 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+.|.|++|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997644
No 496
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.44 E-value=0.00011 Score=46.35 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g~~~ 44 (107)
+|..|.|-|+.||||||+++.|.....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999976554
No 497
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.44 E-value=0.00011 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 20 RTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 20 ~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+.|.|++|+|||++.++|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998654
No 498
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.42 E-value=0.00013 Score=47.61 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 17 ~~~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
..+..+.|.||+|+|||++.++|+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999887654
No 499
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.40 E-value=0.00012 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 038901 18 GERTVVLLGRTGNGKSATGNSILG 41 (107)
Q Consensus 18 ~~~~i~liG~nG~GKSTll~~l~g 41 (107)
.|.-++|+|++|+||||+...|..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.38 E-value=0.00022 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (107)
Q Consensus 19 ~~~i~liG~nG~GKSTll~~l~g~~ 43 (107)
...+.|.||+|+|||+|.++|+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567888999999999999998654
Done!