BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038902
(997 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 498 EYKKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNI 555
+ KK+ L + ++ LP + +L L+L N +P G F+ ++ + L ++ +
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 556 STLP-GSIECLVKLRSLRAENTHLEKAPLK--KEFKELVILILRGSSIRELPKGL-ERWI 611
LP G + LV L LR + L+ P + +L L L + ++ LPKG+ ++
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 612 NLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSR 671
+LK L L NN L+ +P KL +L+ L + N+ +L+ P AF SL +
Sbjct: 158 SLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN----QLKRVP---EGAFD---SLEK 206
Query: 672 LTVLYIHIN 680
L +L + N
Sbjct: 207 LKMLQLQEN 215
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
L+L N K+ PG F+ + + L L + LP G + L +L L L P
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 583 LKKEFKELV---ILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLE 639
F LV L + + + ELP+G+ER +L L L N L+ IP +L L
Sbjct: 105 -SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLT 162
Query: 640 ELYIGNSFGN-WELE 653
Y+ FGN W+ E
Sbjct: 163 HAYL---FGNPWDCE 174
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 494 EDLKEYKKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLS 551
+ L K++ L+++ + LPD L L L HN +P G F+ + + LDLS
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 552 YTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
Y + +LP G + L +L+ LR L+ P
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 544 EINFLDLSYTNISTLPG--SIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIR 601
E+N +D N S + I+ L +R L L KE L LIL G+ ++
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98
Query: 602 ELPKGL-ERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKS 660
LP G+ ++ NLK L L N LQ +P + KL L L + ++ +L+ P
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN----QLQSLPK--- 150
Query: 661 AAFKEVASLSRLTVLYIHINS 681
F ++ +L+ L + Y + S
Sbjct: 151 GVFDKLTNLTELDLSYNQLQS 171
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 508 GINKLPDEPMCPQLLTL---FLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIEC 564
G NKL D +L L L N +P G F+ + + L L + +LP +
Sbjct: 71 GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-- 128
Query: 565 LVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGL-ERWINLKLLDLSNNIF 623
+ L L L + ++ LPKG+ ++ NL LDLS N
Sbjct: 129 -------------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ- 168
Query: 624 LQGIPPNIISKLCQLEEL 641
LQ +P + KL QL++L
Sbjct: 169 LQSLPEGVFDKLTQLKDL 186
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 500 KKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST 557
+K+ L +G+ L D +L L L +N + G F+ + E+ L L+ +++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 558 LP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINL 613
LP G + L +L L L+ P + +L L L + ++ +P G ++ NL
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 614 KLLDLSNNIFLQGIPPNIISKLCQLEELYI-GNSF 647
+ L LS N LQ +P +L +L+ + + GN F
Sbjct: 158 QTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 500 KKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST 557
+K+ L +G+ L D +L L L +N + G F+ + E+ L L+ +++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 558 LP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINL 613
LP G + L +L L L+ P + +L L L + ++ +P G ++ NL
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 614 KLLDLSNNIFLQGIPPNIISKLCQLEELYI-GNSF 647
+ L LS N LQ +P +L +L+ + + GN F
Sbjct: 158 QTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 33/172 (19%)
Query: 508 GINKLPDEPMCPQLLTL---FLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIEC 564
G NKL D +L L L N +P G F+ + + L L + +LP +
Sbjct: 71 GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV-- 128
Query: 565 LVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGL-ERWINLKLLDLSNNIF 623
+ L L L + ++ LPKG+ ++ NL LDL NN
Sbjct: 129 -------------------FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ- 168
Query: 624 LQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVL 675
LQ +P + KL QL++L S + +L+ P+ F + SL+ + +L
Sbjct: 169 LQSLPEGVFDKLTQLKQL----SLNDNQLKSVPD---GVFDRLTSLTHIWLL 213
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 544 EINFLDLSYTNISTLPG--SIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIR 601
E+N +D N S + I+ L +R L L KE L LIL G+ ++
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98
Query: 602 ELPKGL-ERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKS 660
LP G+ ++ NLK L L N LQ +P + KL L LY+ ++ +L+ P
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLYLYHN----QLQSLPK--- 150
Query: 661 AAFKEVASLSRL 672
F ++ +L+RL
Sbjct: 151 GVFDKLTNLTRL 162
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 494 EDLKEYKKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLS 551
+ L K++ L+++ + LPD L L+L HN +P G F+ + + LDL
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 552 YTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
+ +LP G + L +L+ L + L+ P
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 524 LFLQHNAF-DKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSLRAENTHLEKA 581
L+LQ+N F KIPP + E+ L LS+ +S T+P S+ L KLR L+ LE
Sbjct: 399 LYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-G 456
Query: 582 PLKKEF---KELVILILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIP 628
+ +E K L LIL + + E+P GL NL + LSNN IP
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 524 LFLQHNAF-DKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSLRAENTHLEKA 581
L+LQ+N F KIPP + E+ L LS+ +S T+P S+ L KLR L+ LE
Sbjct: 396 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-G 453
Query: 582 PLKKEF---KELVILILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIP 628
+ +E K L LIL + + E+P GL NL + LSNN IP
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 34/270 (12%)
Query: 523 TLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP 582
+L LQ + F I F+ ++ LDL+ T++ LP ++ L L+ L H ++
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 583 --LKKEFKELVILILRGSSIRELPKG---LERWINLKLLDLS-NNIFLQGIPPNIISKLC 636
F L L +RG ++++L G LE+ NL+ LDLS N+I + L
Sbjct: 315 QISAANFPSLTHLYIRG-NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 637 QLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLY--IHINSTEVLSKQFDGPWG 694
L+ L N E +S AFKE L L + + +HIN+ + P+
Sbjct: 374 HLQTL-------NLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ-------SPFQ 419
Query: 695 NLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVXXXXXXXXXXXXXRSRDLEDIGAIE 754
NL +V +N Y + ++ L + P+ + ++ L+ +G++E
Sbjct: 420 NLHFLQV-LNLTYCFLDTSNQHLLAGL--PVLRHLNLKGNHFQDGTITKTNLLQTVGSLE 476
Query: 755 VQGLTALMTMHLRACSLQRIFRSSFYARAR 784
V + L +C L I + +F++ +
Sbjct: 477 V--------LILSSCGLLSIDQQAFHSLGK 498
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 521 LLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLE 579
L L+L N +P G F + + +L+LS + +LP G + L +L+ L L+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 580 KAP--LKKEFKELVILILRGSSIRELPKGL-ERWINLKLLDLSNN 621
P + + +L L L + ++ +P G+ +R +L+ + L +N
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHL 578
Q L L+ N+ +P G F+ + + L L + +LP G L L L L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 579 EKAP--LKKEFKELVILILRGSSIRELPKGL-ERWINLKLLDLSNNIFLQGIPPNIISKL 635
+ P + + +L L L + ++ LP G+ ++ LK L L N L+ +P + +L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRL 147
Query: 636 CQLEELYI 643
L+ +++
Sbjct: 148 TSLQYIWL 155
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 492 PQEDLKEYKKISLMD---SGINKLPDEPMC--PQLLTLFLQHNAFDKIPPGFFEHMREIN 546
P+E L YK ++L+D + I+ L ++ QLLTL L +N IPP F+ ++ +
Sbjct: 47 PKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 547 FLDLSYTNISTLP 559
L L +IS +P
Sbjct: 106 LLSLHGNDISVVP 118
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 563 ECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNN 621
EC +R N L+ P K +++ L L G+ +PK L + +L L+DLSNN
Sbjct: 7 ECTCLDTVVRCSNKGLKVLP-KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN 64
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRAEN--- 575
L L L+ N FD+IP F+ + E+ +DL N++TLP S+ V L+SL +
Sbjct: 547 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 606
Query: 576 THLEKAPLKKEFKELVILILR 596
T +EK F+ L L +R
Sbjct: 607 TSVEKKVFGPAFRNLTELDMR 627
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRAEN--- 575
L L L+ N FD+IP F+ + E+ +DL N++TLP S+ V L+SL +
Sbjct: 542 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 601
Query: 576 THLEKAPLKKEFKELVILILR 596
T +EK F+ L L +R
Sbjct: 602 TSVEKKVFGPAFRNLTELDMR 622
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRAEN--- 575
L L L+ N FD+IP F+ + E+ +DL N++TLP S+ V L+SL +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Query: 576 THLEKAPLKKEFKELVILILR 596
T +EK F+ L L +R
Sbjct: 597 TSVEKKVFGPAFRNLTELDMR 617
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPL 583
L L+ N +P G F+ + ++ L LS I +LP +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------------------- 71
Query: 584 KKEFKELVILILRGSSIRELPKGL-ERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642
+ +L IL L + ++ LP G+ ++ LK L L N L+ +P I +L L++++
Sbjct: 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 130
Query: 643 I 643
+
Sbjct: 131 L 131
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 494 EDLKEYKKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLS 551
+ L + K+SL + I LPD +L L+L N +P G F+ + ++ L L
Sbjct: 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108
Query: 552 YTNISTLPGSI 562
+ ++P I
Sbjct: 109 TNQLKSVPDGI 119
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHL 578
QL L L N +P G F+ + ++ L L + +LP G + L +L+ L + L
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 579 EKAP 582
+ P
Sbjct: 113 KSVP 116
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 616 LDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVL 675
L+L +N LQ +P + KL QL +L S +++ P+ F + L++LT+L
Sbjct: 33 LELESNK-LQSLPHGVFDKLTQLTKL----SLSQNQIQSLPD---GVFDK---LTKLTIL 81
Query: 676 YIHINSTEVLSKQFDGPWGNLKRFRVQVN 704
Y+H N + L LK + N
Sbjct: 82 YLHENKLQSLPNGVFDKLTQLKELALDTN 110
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAE 574
P Q+L L++ N K+ PG F+ + ++ +L+L+ ++ LP G + L KL L
Sbjct: 39 PTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 575 NTHLEKAPL 583
L+ P+
Sbjct: 97 INQLKSIPM 105
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 24/101 (23%)
Query: 508 GINKLPDEPMCPQLLT-LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLV 566
G+ ++P P+ +T + L+ N IPPG F +++ +DLS IS L + +
Sbjct: 22 GLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQ 77
Query: 567 KLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGL 607
LRSL + L+L G+ I ELPK L
Sbjct: 78 GLRSLNS-------------------LVLYGNKITELPKSL 99
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
L+L N K+ PG F+ + ++ LDL ++ LP G + L +L L + L+ P
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
L+L N K+ PG F+ + ++ LDL ++ LP G + L +L L + L+ P
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
L+L N K+ PG F+ + ++ LDL ++ LP G + L +L L + L+ P
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 17/181 (9%)
Query: 526 LQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPL-- 583
LQ + F I F + LDL+ T++S LP + L L+ L E
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 584 KKEFKELVILILRGSSIR-ELPKG-LERWINLKLLDLSNNIFLQGIPPNI-ISKLCQLEE 640
F L L ++G++ R EL G LE NL+ LDLS++ N+ + L L+
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 641 LYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFR 700
L N E + K+ AFKE L L + + T + K P+ NL +
Sbjct: 381 L-------NLSYNEPLSLKTEAFKECPQLELLDLAF-----TRLKVKDAQSPFQNLHLLK 428
Query: 701 V 701
V
Sbjct: 429 V 429
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP 582
L+L +N K+ PG F+H+ + L + ++ +P G + L +L L + HL+ P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 508 GINKL-----PDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGS 561
GIN L P QL L++ H P F ++ + LD SY +S TLP S
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 562 IECLVKLRSLRAENTHLEKA------PLKKEFKELVILILRGSSIRELPKGLERWINLKL 615
I L L + + + A K F + I R ++P +NL
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNRLTGKIPPTFAN-LNLAF 201
Query: 616 LDLSNNIF 623
+DLS N+
Sbjct: 202 VDLSRNML 209
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ N++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ N++
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 163 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 198
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 199 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 227
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ N++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ N++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ N++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 24/101 (23%)
Query: 508 GINKLPDEPMCPQLLT-LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLV 566
G+ ++P P+ +T + L+ N IPPG F +++ +DLS IS L + +
Sbjct: 22 GLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQ 77
Query: 567 KLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGL 607
LRSL + L+L G+ I ELPK L
Sbjct: 78 GLRSLNS-------------------LVLYGNKITELPKSL 99
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ +++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 526 LQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPL-- 583
LQ + F + F + LDL+ +++ LP IE + L+ L ++
Sbjct: 260 LQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQIN 319
Query: 584 KKEFKELVILILRGSSIRELPKG---LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEE 640
F L L ++G ++R+L G LE+ NL+ LDLS++ N+ +L L
Sbjct: 320 AASFPSLRDLYIKG-NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL--QLKNLRH 376
Query: 641 LYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFR 700
L + N E + AFKE L L V + H++ K P+ NL R
Sbjct: 377 L----QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH-----VKAPHSPFQNLHLLR 427
Query: 701 V 701
V
Sbjct: 428 V 428
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 496 LKEYKKISLMDSGINKLPDEPM--CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYT 553
+ ++++L + INK+ D LL L L N I FE++ ++ LDLSY
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 554 NISTLPG-SIECLVKLRSLRAENTHLEKAP 582
+I L S L L+ L + L+ P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVP 387
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ ++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST-----LPGSIECL 565
L L+L HN + +PPG F H+ + L L+ ++ LP ++E L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL 531
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ ++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 492 PQEDLKEYKKISLMDSGINKL--PDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLD 549
P++ K +SL + I++L PD +L L L HN + F +++ +LD
Sbjct: 47 PKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106
Query: 550 LSYT---NISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSS 599
+S+ NIS P + LR L + P+ KEF L L G S
Sbjct: 107 VSHNRLQNISCCP-----MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ ++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 502 ISLMDSGINKLPDEPMCP-----QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS 556
++++D N+L P+ +L L+L+ N +PPG ++ L L+ ++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 557 TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLL 616
LP A L + L L+L+ +S+ +PKG + LL
Sbjct: 162 ELP---------------------AGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLL 197
Query: 617 DLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657
+ FL G P LC E LY F W + N
Sbjct: 198 PFA---FLHGNP-----WLCNCEILY----FRRWLQDNAEN 226
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 586 EFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYI 643
++ L L L G+S+ ELP ++ NL++LDLS+N L +P + S QL+ Y
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF-QLKYFYF 300
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 95/225 (42%), Gaps = 38/225 (16%)
Query: 434 VLNKMQSIVEDLRNRKILSYREGEGTYRIHDNTRIVVKYFATKEGNNLKSEAGLKKGWPQ 493
VL++ Q RNR ++R+ +N +I T+ G LK+ A L
Sbjct: 31 VLSQWQRHYNADRNRWHSAWRQANS-----NNPQI-----ETRTGRALKATADL-----L 75
Query: 494 EDLKEYKKISLMDSGINKLPDEPMCPQLLTL-FLQHNAFDKIP----PGFFEHMREINFL 548
ED + +++L + LP P Q L LQH D P + + L
Sbjct: 76 EDATQPGRVALELRSV-PLPQFP--DQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETL 132
Query: 549 DLSYTNISTLPGSIECLVKLR--SLRA--ENTHLEKAPLKK-----EFKELV---ILILR 596
L+ + LP SI L +LR S+RA E T L + PL E + LV L L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLE 191
Query: 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEEL 641
+ IR LP + NLK L + N+ L + P I L +LEEL
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSP-LSALGP-AIHHLPKLEEL 234
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 545 INFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEF---KELVILILRGSSIR 601
+ +LDLS+ + T+ + L +L L ++++L++ F + L+ L + + R
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 602 ELPKGLERWI-NLKLLDLSNNIFLQGIPPNIISKL----------CQLEEL 641
G+ + +L++L ++ N F + P+I ++L CQLE+L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEK 580
L++ NA +PP F+++ + L L ++S+LP G KL +L N +LE+
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 166 LQGPGGIGKSTLMEQLAKQIDTIA 189
+ GP G+GKST ++LA Q+D A
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSA 30
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE 222
+I + G G GK+TLM+ L ++I P D+ + + + +L L + E +
Sbjct: 177 VIVVAGETGSGKTTLMKALMQEI----PFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK 232
Query: 223 DELQRRATLAKRLRE--RTKKVLIILDDVR-----EKINLAVSG 259
+E T A LR R K I+L ++R + IN+A SG
Sbjct: 233 EEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASG 276
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL---- 214
+K N++ GP GIGK+TL++ ++ + + I+ + +++ KI L
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-----IIYNGVPITKVKGKIFFLPEEI 87
Query: 215 -LKFKIEEEDELQRRATL 231
+ KI ED L+ A+L
Sbjct: 88 IVPRKISVEDYLKAVASL 105
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 524 LFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEK 580
L++ NA +PP F+++ + L L ++S+LP G KL +L N +LE+
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 151 SIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQI 185
++ KL K K I+ L GP G+GK++L + +AK +
Sbjct: 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 GLQGPGGIGKSTLMEQLAK-QIDTIAPHDKAHVIVAE 200
G+ GP G GKSTLM +A Q+D ++ + E
Sbjct: 465 GICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE 501
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 162 NIIGLQGPGGIGKSTLMEQLA-----KQIDTIAPHDKAHVIVAES--SDLRRIQDKIAEL 214
++ + GP GKST + Q A Q+ + P ++AH+ + + + + D
Sbjct: 577 ELVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGK 636
Query: 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDV 249
F +E E+ +A L+E T+ L++LD+V
Sbjct: 637 STFXVEXEE-------VALILKEATENSLVLLDEV 664
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 160 KVNIIGLQGPGGIGKSTLMEQLA 182
K +IG+ GP GIGK+T ++ LA
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLA 403
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 160 KVNIIGLQGPGGIGKSTLMEQLA 182
K +IG+ GP GIGK+T ++ LA
Sbjct: 367 KGEVIGIVGPNGIGKTTFVKMLA 389
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 163 IIGLQGPGGIGKSTLMEQLA-----KQIDTIAPHDKAHVIVAES--SDLRRIQDKIAELL 215
++ + GP GKST + Q A Q+ + P ++AH+ + + + + D
Sbjct: 462 LVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKS 521
Query: 216 KFKIEEEDELQRRATLAKRLRERTKKVLIILDDV 249
F +E E+ +A L+E T+ L++LD+V
Sbjct: 522 TFXVEXEE-------VALILKEATENSLVLLDEV 548
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 162 NIIGLQGPGGIGKSTLMEQLA-----KQIDTIAPHDKAHVIVAES--SDLRRIQDKIAEL 214
++ + GP GKST + Q A Q+ + P ++AH+ + + + + D
Sbjct: 577 ELVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGK 636
Query: 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDV 249
F +E E+ +A L+E T+ L++LD+V
Sbjct: 637 STFXVEXEE-------VALILKEATENSLVLLDEV 664
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLE 579
+L L + HN + F+ +E+ +LDLS+ + + S V L+ L +
Sbjct: 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFD 103
Query: 580 KAPLKKEFKELVILILRGSSIRELPKG 606
P+ KEF + L G S L K
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKS 130
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 537 GFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAPLKKEFKELVILIL 595
G F+ M++++++ ++ TNI+T+P G L +L + T ++ A LK L L L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGL 223
Query: 596 RGSSIRELPKG-LERWINLKLLDLSNN 621
+SI + G L +L+ L L+NN
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNN 250
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 544 EINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEF---KELVILILRGSSI 600
+ +LDLS+ + T+ + L +L L ++++L++ F + L+ L + +
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 601 RELPKGLERWI-NLKLLDLSNNIFLQGIPPNIISKL----------CQLEELYIGNSFGN 649
R G+ + +L++L ++ N F + P+I ++L CQLE+L +F +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNS 492
Query: 650 WELEETPNPKSAAFKEVAS--LSRLTVL---YIHIN 680
+ N S K V RLT L ++H N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 537 GFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAPLKKEFKELVILIL 595
G F+ M++++++ ++ TNI+T+P G L +L + T ++ A LK L L L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGL 223
Query: 596 RGSSIRELPKG-LERWINLKLLDLSNN 621
+SI + G L +L+ L L+NN
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNN 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,269,895
Number of Sequences: 62578
Number of extensions: 1098689
Number of successful extensions: 4093
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 3932
Number of HSP's gapped (non-prelim): 202
length of query: 997
length of database: 14,973,337
effective HSP length: 108
effective length of query: 889
effective length of database: 8,214,913
effective search space: 7303057657
effective search space used: 7303057657
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)