Query 038902
Match_columns 997
No_of_seqs 452 out of 4783
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.3E-84 2E-88 765.6 43.7 789 14-884 4-862 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-65 2.7E-70 647.8 53.1 762 71-983 132-945 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.6E-42 1.9E-46 370.6 16.8 273 145-428 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.7E-30 8.1E-35 327.0 27.3 438 496-987 117-590 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-29 2.4E-34 322.8 25.7 450 496-985 92-564 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.7E-26 5.9E-31 244.4 10.1 368 490-880 45-427 (873)
7 KOG4194 Membrane glycoprotein 99.9 4.3E-25 9.4E-30 235.3 4.7 356 496-878 77-448 (873)
8 PLN03210 Resistant to P. syrin 99.9 1.8E-21 3.9E-26 247.0 26.9 377 496-924 557-945 (1153)
9 KOG0444 Cytoskeletal regulator 99.9 1E-23 2.2E-28 225.9 -1.9 365 519-983 7-377 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.2E-23 2.6E-28 225.4 -2.6 316 490-830 46-376 (1255)
11 KOG0618 Serine/threonine phosp 99.8 2.1E-22 4.6E-27 226.8 0.4 425 499-980 23-488 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1E-23 2.2E-28 215.5 -9.4 255 500-774 48-312 (565)
13 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.3E-27 208.1 -11.5 349 496-878 90-467 (565)
14 KOG0618 Serine/threonine phosp 99.8 3.3E-21 7.1E-26 217.3 -6.2 404 498-947 46-488 (1081)
15 KOG0617 Ras suppressor protein 99.6 8.7E-17 1.9E-21 146.0 -3.8 166 510-689 24-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 162.3 17.3 241 490-773 215-459 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 162.6 15.2 172 498-706 202-374 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 164.4 13.6 240 499-772 180-428 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.5 2.4E-14 5.1E-19 172.4 8.0 162 508-680 512-678 (889)
20 KOG4237 Extracellular matrix p 99.4 9E-15 2E-19 150.5 -0.5 134 489-622 59-199 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 9.9E-18 159.0 11.8 159 519-706 178-337 (754)
22 KOG0617 Ras suppressor protein 99.4 2.4E-14 5.1E-19 130.4 -3.6 148 496-646 32-183 (264)
23 KOG4237 Extracellular matrix p 99.3 7.3E-14 1.6E-18 143.9 -3.7 142 502-645 51-197 (498)
24 PRK00411 cdc6 cell division co 99.3 5.9E-10 1.3E-14 126.7 23.6 288 141-453 31-357 (394)
25 PRK04841 transcriptional regul 99.2 2.8E-10 6.1E-15 144.6 20.5 289 141-474 15-332 (903)
26 PF01637 Arch_ATPase: Archaeal 99.2 1.1E-10 2.4E-15 122.6 12.3 192 142-335 1-233 (234)
27 TIGR02928 orc1/cdc6 family rep 99.2 3.5E-09 7.5E-14 119.2 25.0 289 141-453 16-349 (365)
28 TIGR03015 pepcterm_ATPase puta 99.2 1.9E-09 4.2E-14 115.6 19.9 179 159-340 41-242 (269)
29 TIGR00635 ruvB Holliday juncti 99.1 5E-09 1.1E-13 114.5 21.0 264 140-454 4-289 (305)
30 KOG4341 F-box protein containi 99.1 2.6E-12 5.6E-17 133.9 -4.6 238 729-995 211-453 (483)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-10 2.5E-15 129.0 5.6 37 759-795 250-289 (319)
32 PRK00080 ruvB Holliday junctio 99.1 1.8E-08 3.8E-13 110.8 22.2 277 134-455 19-311 (328)
33 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.1E-14 105.7 12.7 140 162-307 1-163 (166)
34 KOG4341 F-box protein containi 99.0 2.2E-11 4.7E-16 127.2 -3.9 234 732-984 162-417 (483)
35 cd00116 LRR_RI Leucine-rich re 99.0 5.1E-10 1.1E-14 123.7 5.2 99 524-622 3-119 (319)
36 PF14580 LRR_9: Leucine-rich r 98.9 9.5E-10 2E-14 106.4 5.3 135 506-643 6-147 (175)
37 COG2909 MalT ATP-dependent tra 98.9 8.5E-08 1.8E-12 110.1 18.9 291 141-476 20-340 (894)
38 PF14580 LRR_9: Leucine-rich r 98.9 2.4E-09 5.2E-14 103.6 5.6 122 497-620 19-149 (175)
39 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.8E-15 123.4 -2.4 188 502-706 55-246 (722)
40 KOG1259 Nischarin, modulator o 98.8 6.2E-10 1.3E-14 110.9 -0.7 130 496-628 283-415 (490)
41 PRK13342 recombination factor 98.8 6.1E-08 1.3E-12 109.8 13.1 181 131-337 3-197 (413)
42 PRK07003 DNA polymerase III su 98.7 2.6E-07 5.7E-12 106.6 16.7 190 130-340 6-225 (830)
43 TIGR02903 spore_lon_C ATP-depe 98.7 3.2E-06 7E-11 99.8 26.3 210 128-339 142-398 (615)
44 COG2256 MGS1 ATPase related to 98.7 1.1E-07 2.4E-12 100.2 12.2 175 130-330 14-206 (436)
45 KOG0532 Leucine-rich repeat (L 98.7 9.8E-10 2.1E-14 119.1 -3.4 146 496-646 97-244 (722)
46 PTZ00112 origin recognition co 98.7 7.1E-07 1.5E-11 103.3 18.5 201 141-341 756-987 (1164)
47 PRK06893 DNA replication initi 98.7 1.3E-07 2.7E-12 97.9 11.4 148 161-335 39-202 (229)
48 COG1474 CDC6 Cdc6-related prot 98.7 2.2E-06 4.7E-11 94.0 20.8 200 141-340 18-242 (366)
49 KOG3207 Beta-tubulin folding c 98.7 6.7E-09 1.5E-13 109.5 1.2 185 496-684 120-315 (505)
50 PF05496 RuvB_N: Holliday junc 98.6 4.8E-07 1E-11 89.3 13.9 183 131-341 15-226 (233)
51 COG4886 Leucine-rich repeat (L 98.6 2.3E-08 5E-13 113.9 5.4 174 517-706 114-289 (394)
52 PRK14962 DNA polymerase III su 98.6 7.6E-07 1.7E-11 101.1 16.9 191 129-340 3-223 (472)
53 KOG3207 Beta-tubulin folding c 98.6 6.9E-09 1.5E-13 109.4 0.4 183 516-708 118-316 (505)
54 PRK14949 DNA polymerase III su 98.6 6.8E-07 1.5E-11 105.4 16.6 204 130-340 6-225 (944)
55 PRK04195 replication factor C 98.6 1.4E-06 3.1E-11 100.8 18.5 181 133-335 7-201 (482)
56 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.8E-07 8.2E-12 95.0 12.3 166 144-337 21-202 (226)
57 PRK12402 replication factor C 98.6 6.4E-07 1.4E-11 99.7 14.8 200 134-334 9-224 (337)
58 PRK14961 DNA polymerase III su 98.6 1.4E-06 3E-11 96.9 17.3 196 130-332 6-216 (363)
59 PLN03025 replication factor C 98.6 3.8E-07 8.2E-12 99.8 12.6 183 132-330 5-194 (319)
60 PRK06645 DNA polymerase III su 98.6 8.5E-07 1.8E-11 101.0 15.5 200 132-336 13-230 (507)
61 PRK14963 DNA polymerase III su 98.6 1.3E-06 2.8E-11 100.1 16.7 208 130-340 4-222 (504)
62 PTZ00202 tuzin; Provisional 98.6 9.2E-06 2E-10 87.5 21.6 162 138-308 260-435 (550)
63 PRK12323 DNA polymerase III su 98.6 7.7E-07 1.7E-11 101.5 14.4 208 131-340 7-230 (700)
64 PRK14956 DNA polymerase III su 98.5 3.9E-07 8.5E-12 101.3 11.4 200 131-336 9-223 (484)
65 PRK14960 DNA polymerase III su 98.5 1.2E-06 2.7E-11 100.1 15.0 201 131-338 6-222 (702)
66 KOG1259 Nischarin, modulator o 98.5 1E-08 2.3E-13 102.3 -1.4 79 544-622 285-363 (490)
67 PF13401 AAA_22: AAA domain; P 98.5 4.1E-07 8.9E-12 85.5 9.3 115 160-277 3-125 (131)
68 COG3899 Predicted ATPase [Gene 98.5 1.9E-06 4.1E-11 105.3 17.0 311 142-474 2-386 (849)
69 COG4886 Leucine-rich repeat (L 98.5 1E-07 2.2E-12 108.6 5.6 177 496-687 115-294 (394)
70 PRK14957 DNA polymerase III su 98.5 2.1E-06 4.5E-11 98.4 16.0 193 130-340 6-225 (546)
71 PRK14964 DNA polymerase III su 98.5 2.4E-06 5.2E-11 96.4 16.2 183 131-331 4-212 (491)
72 PRK13341 recombination factor 98.5 6.8E-07 1.5E-11 106.3 12.2 176 130-330 18-211 (725)
73 PRK14955 DNA polymerase III su 98.5 2.1E-06 4.5E-11 96.7 15.0 207 130-336 6-229 (397)
74 PRK00440 rfc replication facto 98.5 2.2E-06 4.8E-11 94.6 15.0 182 133-332 10-199 (319)
75 cd01128 rho_factor Transcripti 98.5 5.3E-07 1.1E-11 93.2 8.9 93 159-252 14-115 (249)
76 TIGR02397 dnaX_nterm DNA polym 98.4 6.2E-06 1.4E-10 92.4 17.8 188 132-337 6-219 (355)
77 PF13173 AAA_14: AAA domain 98.4 5.9E-07 1.3E-11 83.7 7.9 118 161-299 2-127 (128)
78 PRK14951 DNA polymerase III su 98.4 3.4E-06 7.5E-11 98.0 15.8 201 131-333 7-222 (618)
79 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.5E-11 82.7 11.5 123 143-279 1-131 (151)
80 PRK09376 rho transcription ter 98.4 7.4E-07 1.6E-11 95.6 8.9 92 160-252 168-268 (416)
81 KOG2120 SCF ubiquitin ligase, 98.4 5.2E-08 1.1E-12 97.6 -0.5 147 728-882 204-351 (419)
82 PRK07994 DNA polymerase III su 98.4 4.8E-06 1E-10 97.0 15.1 204 130-340 6-225 (647)
83 PRK08691 DNA polymerase III su 98.4 4.3E-06 9.4E-11 96.8 14.5 189 131-340 7-225 (709)
84 PRK05896 DNA polymerase III su 98.4 4.9E-06 1.1E-10 95.4 14.8 201 131-338 7-223 (605)
85 PRK14959 DNA polymerase III su 98.4 7.2E-06 1.6E-10 94.6 15.9 204 131-341 7-226 (624)
86 PF13191 AAA_16: AAA ATPase do 98.3 2E-06 4.3E-11 86.5 9.8 48 141-188 1-51 (185)
87 PRK14970 DNA polymerase III su 98.3 1.1E-05 2.4E-10 90.4 16.8 190 130-337 7-211 (367)
88 PRK14954 DNA polymerase III su 98.3 9.5E-06 2.1E-10 94.8 16.5 207 130-337 6-230 (620)
89 PRK05564 DNA polymerase III su 98.3 1.1E-05 2.4E-10 88.1 16.1 173 141-335 5-189 (313)
90 PRK08727 hypothetical protein; 98.3 7.1E-06 1.5E-10 85.1 13.8 163 144-333 24-201 (233)
91 PRK07764 DNA polymerase III su 98.3 9.3E-06 2E-10 98.0 16.7 189 131-340 6-226 (824)
92 KOG2120 SCF ubiquitin ligase, 98.3 4.7E-08 1E-12 97.9 -2.5 188 734-948 185-376 (419)
93 PRK09112 DNA polymerase III su 98.3 1.2E-05 2.6E-10 88.0 15.3 193 141-337 24-241 (351)
94 KOG1909 Ran GTPase-activating 98.3 3.5E-07 7.6E-12 94.3 3.1 235 517-771 28-310 (382)
95 PRK14958 DNA polymerase III su 98.3 8.4E-06 1.8E-10 93.8 14.6 187 131-338 7-223 (509)
96 PRK08451 DNA polymerase III su 98.3 1.4E-05 3.1E-10 91.2 16.2 186 131-334 5-216 (535)
97 PRK14952 DNA polymerase III su 98.3 1.4E-05 3E-10 92.8 16.2 190 131-341 4-225 (584)
98 COG3903 Predicted ATPase [Gene 98.3 1E-06 2.2E-11 93.9 6.4 291 160-474 13-314 (414)
99 PRK14971 DNA polymerase III su 98.3 1.5E-05 3.3E-10 93.7 16.8 187 132-336 9-223 (614)
100 PRK07471 DNA polymerase III su 98.3 3.5E-06 7.6E-11 92.7 10.8 194 140-337 19-239 (365)
101 PF13855 LRR_8: Leucine rich r 98.3 6.2E-07 1.4E-11 71.1 3.6 59 519-577 1-60 (61)
102 PRK14969 DNA polymerase III su 98.2 1.4E-05 3.1E-10 92.6 15.3 189 131-340 7-225 (527)
103 PRK06305 DNA polymerase III su 98.2 2.4E-05 5.2E-10 89.0 16.6 187 131-338 8-225 (451)
104 PRK08084 DNA replication initi 98.2 1.5E-05 3.2E-10 82.8 13.7 162 146-334 30-207 (235)
105 PRK06647 DNA polymerase III su 98.2 2.2E-05 4.8E-10 91.3 16.3 182 131-333 7-217 (563)
106 PRK07133 DNA polymerase III su 98.2 2.5E-05 5.5E-10 91.6 16.4 197 131-337 9-221 (725)
107 PRK09111 DNA polymerase III su 98.2 2.6E-05 5.5E-10 91.1 16.4 199 131-334 15-231 (598)
108 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 69.2 3.7 56 544-599 2-60 (61)
109 TIGR00767 rho transcription te 98.2 6.1E-06 1.3E-10 89.3 9.7 92 160-252 167-267 (415)
110 TIGR00678 holB DNA polymerase 98.2 3.5E-05 7.5E-10 77.4 14.6 154 151-331 3-186 (188)
111 PRK14950 DNA polymerase III su 98.2 3.8E-05 8.2E-10 90.8 17.2 200 130-335 6-220 (585)
112 KOG0989 Replication factor C, 98.2 1.2E-05 2.7E-10 81.8 10.8 195 133-337 29-232 (346)
113 PLN03150 hypothetical protein; 98.1 4.9E-06 1.1E-10 99.3 8.8 102 544-646 419-525 (623)
114 KOG2982 Uncharacterized conser 98.1 3.8E-07 8.2E-12 91.5 -0.6 67 733-799 198-264 (418)
115 PRK07940 DNA polymerase III su 98.1 6E-05 1.3E-09 83.7 16.5 171 140-336 5-213 (394)
116 PF14516 AAA_35: AAA-like doma 98.1 0.00021 4.5E-09 78.3 20.4 199 141-345 12-248 (331)
117 KOG2543 Origin recognition com 98.1 0.00017 3.7E-09 75.9 18.3 162 141-307 7-193 (438)
118 PF00308 Bac_DnaA: Bacterial d 98.1 3.9E-05 8.4E-10 78.6 13.7 157 161-334 34-206 (219)
119 KOG1909 Ran GTPase-activating 98.1 3.3E-07 7.1E-12 94.5 -1.6 233 539-796 26-310 (382)
120 PLN03150 hypothetical protein; 98.1 5.8E-06 1.2E-10 98.7 8.4 78 568-646 420-500 (623)
121 PRK09087 hypothetical protein; 98.1 1.9E-05 4E-10 81.2 11.0 139 161-335 44-194 (226)
122 COG2255 RuvB Holliday junction 98.1 3.9E-05 8.4E-10 77.4 12.0 178 135-340 21-227 (332)
123 PRK05563 DNA polymerase III su 98.1 8.9E-05 1.9E-09 86.7 17.1 197 130-332 6-216 (559)
124 KOG0531 Protein phosphatase 1, 98.1 3.4E-07 7.4E-12 104.3 -3.3 104 540-646 92-196 (414)
125 KOG2028 ATPase related to the 98.1 2.3E-05 4.9E-10 81.2 10.1 180 129-330 127-330 (554)
126 PRK14953 DNA polymerase III su 98.0 0.00011 2.4E-09 84.1 16.9 183 131-334 7-218 (486)
127 TIGR01242 26Sp45 26S proteasom 98.0 3.5E-05 7.5E-10 86.1 12.6 169 141-330 123-328 (364)
128 TIGR02881 spore_V_K stage V sp 98.0 3.7E-05 7.9E-10 81.6 12.1 130 161-308 42-192 (261)
129 PRK14948 DNA polymerase III su 98.0 0.00013 2.9E-09 85.9 17.3 199 132-335 8-221 (620)
130 PRK14965 DNA polymerase III su 98.0 8.1E-05 1.8E-09 87.5 15.1 204 131-340 7-225 (576)
131 PHA02544 44 clamp loader, smal 98.0 5.5E-05 1.2E-09 83.2 12.7 152 132-305 13-171 (316)
132 PRK08903 DnaA regulatory inact 98.0 8.3E-05 1.8E-09 77.3 12.8 169 141-340 19-203 (227)
133 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00011 2.5E-09 90.0 15.7 178 136-330 183-390 (852)
134 KOG2227 Pre-initiation complex 98.0 0.00052 1.1E-08 74.3 18.4 200 141-340 151-376 (529)
135 TIGR02880 cbbX_cfxQ probable R 97.9 0.00035 7.6E-09 74.7 17.1 128 163-308 60-209 (284)
136 CHL00181 cbbX CbbX; Provisiona 97.9 0.00063 1.4E-08 72.6 18.7 129 162-308 60-210 (287)
137 TIGR02639 ClpA ATP-dependent C 97.9 0.00016 3.4E-09 88.3 16.0 153 138-307 180-358 (731)
138 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.6E-11 99.8 -2.2 190 498-705 73-266 (414)
139 PRK14087 dnaA chromosomal repl 97.9 9.1E-05 2E-09 84.3 12.9 163 161-338 141-321 (450)
140 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 58.3 3.4 39 544-582 2-40 (44)
141 PRK05642 DNA replication initi 97.9 0.0001 2.3E-09 76.4 11.6 147 161-334 45-206 (234)
142 KOG1947 Leucine rich repeat pr 97.9 3.5E-06 7.6E-11 99.1 0.7 247 668-950 186-442 (482)
143 PRK15386 type III secretion pr 97.9 3.4E-05 7.3E-10 84.1 7.9 70 758-851 51-120 (426)
144 CHL00095 clpC Clp protease ATP 97.8 0.00037 7.9E-09 86.1 16.9 152 141-306 180-353 (821)
145 KOG1859 Leucine-rich repeat pr 97.8 7.8E-07 1.7E-11 99.6 -6.4 125 496-622 163-290 (1096)
146 PRK00149 dnaA chromosomal repl 97.8 0.0006 1.3E-08 78.5 16.5 168 148-332 133-318 (450)
147 TIGR00362 DnaA chromosomal rep 97.7 0.0003 6.5E-09 80.0 13.7 155 161-332 136-306 (405)
148 PRK03992 proteasome-activating 97.7 0.00035 7.6E-09 78.4 14.0 168 141-329 132-336 (389)
149 PRK14088 dnaA chromosomal repl 97.7 0.00063 1.4E-08 77.4 16.2 167 150-332 118-301 (440)
150 PRK07399 DNA polymerase III su 97.7 0.00065 1.4E-08 73.4 15.4 192 141-335 5-220 (314)
151 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.3E-10 95.9 1.8 146 496-642 121-281 (699)
152 KOG2004 Mitochondrial ATP-depe 97.7 0.002 4.4E-08 73.2 18.9 152 141-307 412-596 (906)
153 PF05621 TniB: Bacterial TniB 97.7 0.00078 1.7E-08 70.3 14.7 179 149-331 46-256 (302)
154 TIGR00763 lon ATP-dependent pr 97.7 0.0016 3.5E-08 79.9 20.1 155 141-307 321-505 (775)
155 KOG1947 Leucine rich repeat pr 97.7 9.2E-06 2E-10 95.6 0.3 146 733-885 187-340 (482)
156 PRK10787 DNA-binding ATP-depen 97.7 0.00083 1.8E-08 81.6 16.8 154 141-307 323-506 (784)
157 KOG4579 Leucine-rich repeat (L 97.7 3.1E-06 6.8E-11 75.3 -2.9 90 517-606 51-141 (177)
158 KOG1859 Leucine-rich repeat pr 97.7 1E-06 2.2E-11 98.8 -7.8 97 545-645 166-263 (1096)
159 PRK11331 5-methylcytosine-spec 97.6 0.00012 2.5E-09 81.0 7.8 107 141-252 176-284 (459)
160 TIGR00602 rad24 checkpoint pro 97.6 0.00031 6.7E-09 82.2 11.7 201 132-336 76-324 (637)
161 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00075 1.6E-08 83.7 15.8 153 139-307 172-349 (852)
162 KOG3665 ZYG-1-like serine/thre 97.6 4E-05 8.6E-10 91.1 3.9 127 518-645 121-259 (699)
163 PRK06620 hypothetical protein; 97.6 0.00018 4E-09 73.2 8.2 131 162-331 45-184 (214)
164 PRK12608 transcription termina 97.6 0.00051 1.1E-08 74.2 11.8 103 150-252 121-232 (380)
165 PRK10865 protein disaggregatio 97.6 0.0012 2.7E-08 81.4 16.5 154 139-307 177-354 (857)
166 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 70.3 5.9 97 522-620 45-149 (233)
167 PTZ00454 26S protease regulato 97.6 0.0064 1.4E-07 68.0 20.6 166 141-330 146-351 (398)
168 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 70.4 5.6 99 499-597 44-149 (233)
169 COG3267 ExeA Type II secretory 97.6 0.004 8.6E-08 62.6 16.7 175 158-337 48-246 (269)
170 TIGR03689 pup_AAA proteasome A 97.6 0.00069 1.5E-08 77.2 13.0 158 141-308 183-379 (512)
171 PRK05707 DNA polymerase III su 97.6 0.0019 4.1E-08 70.2 15.9 154 161-336 22-203 (328)
172 PF00004 AAA: ATPase family as 97.6 0.00025 5.4E-09 66.6 8.0 70 164-252 1-70 (132)
173 PRK11034 clpA ATP-dependent Cl 97.5 0.00079 1.7E-08 81.1 13.7 151 141-307 187-362 (758)
174 KOG4579 Leucine-rich repeat (L 97.5 1.2E-05 2.6E-10 71.7 -1.2 110 520-630 28-141 (177)
175 KOG0991 Replication factor C, 97.5 0.00064 1.4E-08 66.4 10.3 54 133-186 20-73 (333)
176 COG2812 DnaX DNA polymerase II 97.5 0.00047 1E-08 77.9 10.8 194 131-330 7-214 (515)
177 PRK15386 type III secretion pr 97.5 0.00036 7.8E-09 76.3 9.5 59 542-605 51-112 (426)
178 PF12799 LRR_4: Leucine Rich r 97.5 9.1E-05 2E-09 53.6 3.4 37 567-603 2-39 (44)
179 COG0466 Lon ATP-dependent Lon 97.5 0.0068 1.5E-07 69.6 19.6 154 141-307 324-508 (782)
180 PRK12422 chromosomal replicati 97.5 0.0014 2.9E-08 74.5 14.4 151 161-329 141-306 (445)
181 PRK14086 dnaA chromosomal repl 97.5 0.0012 2.7E-08 76.1 13.8 154 162-332 315-484 (617)
182 KOG1514 Origin recognition com 97.5 0.0045 9.8E-08 70.6 17.6 197 141-339 397-624 (767)
183 smart00382 AAA ATPases associa 97.5 0.00036 7.9E-09 66.3 8.0 90 162-254 3-92 (148)
184 PTZ00361 26 proteosome regulat 97.5 0.0012 2.6E-08 74.2 13.1 148 141-308 184-368 (438)
185 KOG2982 Uncharacterized conser 97.5 6.4E-05 1.4E-09 76.0 2.6 85 517-601 69-159 (418)
186 COG1373 Predicted ATPase (AAA+ 97.4 0.0015 3.2E-08 73.3 12.9 135 144-303 21-163 (398)
187 TIGR02902 spore_lonB ATP-depen 97.4 0.00068 1.5E-08 79.1 10.4 57 130-186 55-111 (531)
188 PRK08181 transposase; Validate 97.4 0.0011 2.3E-08 69.7 10.7 105 154-278 101-209 (269)
189 PF05673 DUF815: Protein of un 97.4 0.0076 1.6E-07 61.0 16.0 85 141-250 28-116 (249)
190 PRK08118 topology modulation p 97.3 0.00013 2.9E-09 71.2 2.8 34 162-195 2-37 (167)
191 PRK10865 protein disaggregatio 97.3 0.017 3.7E-07 71.6 21.6 46 141-186 569-623 (857)
192 PRK10536 hypothetical protein; 97.3 0.0013 2.8E-08 67.3 9.6 55 141-197 56-110 (262)
193 TIGR01241 FtsH_fam ATP-depende 97.2 0.0047 1E-07 72.1 15.1 148 161-329 88-259 (495)
194 KOG0741 AAA+-type ATPase [Post 97.2 0.0071 1.5E-07 66.5 14.7 155 161-340 538-716 (744)
195 PRK06526 transposase; Provisio 97.2 0.0013 2.8E-08 68.7 9.1 100 160-278 97-201 (254)
196 CHL00176 ftsH cell division pr 97.2 0.0047 1E-07 73.1 14.7 167 141-328 184-386 (638)
197 COG0542 clpA ATP-binding subun 97.2 0.012 2.5E-07 69.8 17.3 103 141-252 492-605 (786)
198 PRK08058 DNA polymerase III su 97.2 0.0067 1.4E-07 66.5 14.7 159 142-306 7-181 (329)
199 PRK12727 flagellar biosynthesi 97.2 0.01 2.2E-07 67.2 16.0 28 160-187 349-376 (559)
200 PF04665 Pox_A32: Poxvirus A32 97.2 0.0074 1.6E-07 61.6 13.7 33 162-196 14-47 (241)
201 TIGR03346 chaperone_ClpB ATP-d 97.1 0.033 7E-07 69.4 21.9 46 141-186 566-620 (852)
202 COG1223 Predicted ATPase (AAA+ 97.1 0.0045 9.7E-08 61.8 10.8 168 141-329 122-318 (368)
203 PRK14722 flhF flagellar biosyn 97.1 0.016 3.5E-07 63.6 16.0 86 161-251 137-226 (374)
204 TIGR02640 gas_vesic_GvpN gas v 97.1 0.012 2.7E-07 62.2 14.9 55 148-208 10-64 (262)
205 PRK08116 hypothetical protein; 97.1 0.0014 3E-08 69.4 7.6 102 162-278 115-221 (268)
206 PRK07261 topology modulation p 97.1 0.0019 4E-08 63.5 8.0 24 163-186 2-25 (171)
207 COG1222 RPT1 ATP-dependent 26S 97.1 0.016 3.5E-07 61.0 15.0 175 141-341 152-372 (406)
208 cd01133 F1-ATPase_beta F1 ATP 97.1 0.003 6.6E-08 65.7 9.8 92 160-252 68-175 (274)
209 TIGR03499 FlhF flagellar biosy 97.1 0.014 3E-07 62.5 15.1 40 160-199 193-233 (282)
210 PF13177 DNA_pol3_delta2: DNA 97.0 0.0044 9.5E-08 60.1 10.4 134 144-295 1-162 (162)
211 PRK08769 DNA polymerase III su 97.0 0.0031 6.8E-08 67.9 10.1 184 147-337 11-209 (319)
212 COG5238 RNA1 Ran GTPase-activa 97.0 0.00019 4E-09 71.7 0.7 239 518-774 29-318 (388)
213 PRK06871 DNA polymerase III su 97.0 0.0042 9.2E-08 67.0 10.8 173 148-333 10-200 (325)
214 PRK08939 primosomal protein Dn 97.0 0.028 6E-07 60.6 16.8 116 144-277 135-260 (306)
215 PRK05703 flhF flagellar biosyn 96.9 0.02 4.2E-07 64.8 15.7 84 161-249 221-308 (424)
216 CHL00195 ycf46 Ycf46; Provisio 96.9 0.021 4.6E-07 65.4 16.1 170 141-330 229-429 (489)
217 PF07693 KAP_NTPase: KAP famil 96.9 0.035 7.6E-07 61.3 17.3 70 146-215 2-80 (325)
218 COG5238 RNA1 Ran GTPase-activa 96.9 0.00032 7E-09 70.1 0.9 152 540-706 27-197 (388)
219 PRK04132 replication factor C 96.9 0.012 2.6E-07 71.2 14.0 151 167-333 570-728 (846)
220 PF01695 IstB_IS21: IstB-like 96.9 0.0014 3E-08 64.6 5.2 75 160-252 46-120 (178)
221 COG1484 DnaC DNA replication p 96.9 0.0039 8.4E-08 65.2 8.8 89 145-252 88-179 (254)
222 TIGR02639 ClpA ATP-dependent C 96.9 0.012 2.7E-07 71.9 14.4 102 141-252 455-565 (731)
223 PRK09183 transposase/IS protei 96.8 0.0037 8E-08 65.8 8.5 27 161-187 102-128 (259)
224 TIGR03345 VI_ClpV1 type VI sec 96.8 0.024 5.2E-07 70.0 16.6 46 141-186 567-621 (852)
225 CHL00095 clpC Clp protease ATP 96.8 0.046 9.9E-07 67.9 19.2 104 141-252 510-623 (821)
226 COG0470 HolB ATPase involved i 96.8 0.011 2.5E-07 65.2 12.8 136 141-293 2-167 (325)
227 KOG0735 AAA+-type ATPase [Post 96.8 0.012 2.7E-07 67.0 12.3 149 162-329 432-608 (952)
228 PRK11034 clpA ATP-dependent Cl 96.8 0.011 2.4E-07 71.4 12.7 102 141-252 459-569 (758)
229 TIGR01243 CDC48 AAA family ATP 96.7 0.022 4.9E-07 69.9 15.5 169 141-330 454-657 (733)
230 COG0593 DnaA ATPase involved i 96.7 0.017 3.7E-07 63.5 12.6 131 160-308 112-258 (408)
231 KOG0734 AAA+-type ATPase conta 96.7 0.0028 6E-08 69.6 6.2 43 145-187 312-363 (752)
232 PF00448 SRP54: SRP54-type pro 96.7 0.011 2.3E-07 59.3 10.1 57 161-218 1-58 (196)
233 PRK06090 DNA polymerase III su 96.7 0.061 1.3E-06 58.0 16.4 174 148-336 11-201 (319)
234 PRK06921 hypothetical protein; 96.7 0.0029 6.3E-08 66.7 6.3 39 160-198 116-154 (266)
235 PRK10867 signal recognition pa 96.7 0.07 1.5E-06 60.0 17.5 30 159-188 98-127 (433)
236 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0027 6E-08 68.4 6.1 47 141-187 52-104 (361)
237 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.2E-08 60.2 3.6 23 163-185 1-23 (121)
238 PF10443 RNA12: RNA12 protein; 96.7 0.11 2.3E-06 57.2 18.0 191 145-344 1-286 (431)
239 PRK00771 signal recognition pa 96.6 0.042 9.2E-07 61.9 15.4 59 159-218 93-152 (437)
240 PRK07993 DNA polymerase III su 96.6 0.0083 1.8E-07 65.5 9.1 176 147-334 9-202 (334)
241 PRK07952 DNA replication prote 96.5 0.052 1.1E-06 56.2 14.2 89 148-252 84-174 (244)
242 PRK14723 flhF flagellar biosyn 96.5 0.067 1.5E-06 63.8 16.6 58 161-219 185-245 (767)
243 TIGR02237 recomb_radB DNA repa 96.5 0.015 3.3E-07 59.4 10.2 47 160-209 11-58 (209)
244 KOG2123 Uncharacterized conser 96.5 0.00018 3.9E-09 72.1 -4.0 82 542-624 18-101 (388)
245 KOG0743 AAA+-type ATPase [Post 96.5 0.054 1.2E-06 59.3 14.2 148 164-343 238-417 (457)
246 KOG0744 AAA+-type ATPase [Post 96.5 0.0087 1.9E-07 61.8 7.7 83 161-252 177-262 (423)
247 PF03215 Rad17: Rad17 cell cyc 96.5 0.015 3.3E-07 67.0 10.7 60 134-197 13-78 (519)
248 PRK14721 flhF flagellar biosyn 96.4 0.074 1.6E-06 59.4 15.6 27 160-186 190-216 (420)
249 PRK12726 flagellar biosynthesi 96.4 0.081 1.7E-06 57.6 15.2 90 160-251 205-296 (407)
250 KOG2228 Origin recognition com 96.4 0.035 7.5E-07 58.0 11.8 164 141-307 25-219 (408)
251 cd01135 V_A-ATPase_B V/A-type 96.4 0.015 3.2E-07 60.5 9.2 93 160-252 68-178 (276)
252 KOG2123 Uncharacterized conser 96.4 0.00024 5.2E-09 71.3 -3.6 76 520-598 20-98 (388)
253 TIGR01243 CDC48 AAA family ATP 96.4 0.041 9E-07 67.6 14.9 170 141-331 179-382 (733)
254 KOG0736 Peroxisome assembly fa 96.4 0.11 2.3E-06 60.4 16.5 165 141-329 673-878 (953)
255 PRK06964 DNA polymerase III su 96.4 0.15 3.2E-06 55.7 16.9 91 239-337 131-226 (342)
256 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.025 5.5E-07 59.0 10.9 91 160-251 18-126 (235)
257 KOG2739 Leucine-rich acidic nu 96.3 0.0015 3.3E-08 65.7 1.5 58 586-643 89-150 (260)
258 PRK06696 uridine kinase; Valid 96.3 0.0059 1.3E-07 63.0 5.9 44 144-187 2-48 (223)
259 PRK12377 putative replication 96.3 0.039 8.5E-07 57.3 11.8 74 161-251 101-174 (248)
260 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.016 3.4E-07 59.4 8.6 120 161-286 30-207 (254)
261 KOG0733 Nuclear AAA ATPase (VC 96.3 0.047 1E-06 61.4 12.6 93 139-251 189-293 (802)
262 COG1102 Cmk Cytidylate kinase 96.3 0.013 2.8E-07 54.6 6.9 47 163-221 2-48 (179)
263 PRK13531 regulatory ATPase Rav 96.3 0.01 2.2E-07 66.6 7.6 65 116-193 7-71 (498)
264 KOG2739 Leucine-rich acidic nu 96.3 0.0024 5.3E-08 64.3 2.5 82 563-646 40-126 (260)
265 TIGR02012 tigrfam_recA protein 96.3 0.016 3.6E-07 62.1 8.9 84 160-251 54-144 (321)
266 COG1618 Predicted nucleotide k 96.2 0.0057 1.2E-07 56.8 4.5 35 161-196 5-41 (179)
267 PRK12597 F0F1 ATP synthase sub 96.2 0.016 3.6E-07 65.2 9.0 92 160-252 142-249 (461)
268 PRK06995 flhF flagellar biosyn 96.2 0.12 2.6E-06 58.8 15.6 57 161-218 256-315 (484)
269 PF00006 ATP-synt_ab: ATP synt 96.2 0.016 3.5E-07 58.6 7.7 89 160-252 14-117 (215)
270 cd00983 recA RecA is a bacter 96.1 0.02 4.4E-07 61.5 8.8 84 160-251 54-144 (325)
271 KOG0739 AAA+-type ATPase [Post 96.1 0.033 7.1E-07 56.9 9.6 167 141-329 134-334 (439)
272 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0076 1.6E-07 61.5 5.3 120 161-284 29-160 (213)
273 COG2607 Predicted ATPase (AAA+ 96.1 0.047 1E-06 54.3 10.3 113 141-278 61-183 (287)
274 KOG0733 Nuclear AAA ATPase (VC 96.1 0.048 1E-06 61.4 11.6 149 160-330 544-718 (802)
275 PRK09354 recA recombinase A; P 96.1 0.019 4.2E-07 62.1 8.5 84 160-251 59-149 (349)
276 PRK09280 F0F1 ATP synthase sub 96.1 0.023 5.1E-07 63.7 9.4 92 160-252 143-250 (463)
277 PRK06002 fliI flagellum-specif 96.1 0.017 3.7E-07 64.6 8.2 90 160-252 164-266 (450)
278 PLN00020 ribulose bisphosphate 96.1 0.022 4.8E-07 61.1 8.6 29 159-187 146-174 (413)
279 PRK08927 fliI flagellum-specif 96.1 0.022 4.8E-07 63.6 9.0 89 160-252 157-260 (442)
280 COG1120 FepC ABC-type cobalami 96.1 0.018 3.8E-07 59.4 7.5 130 160-292 27-213 (258)
281 PRK05541 adenylylsulfate kinas 96.1 0.019 4.2E-07 56.8 7.8 35 160-196 6-41 (176)
282 PRK08972 fliI flagellum-specif 96.0 0.019 4.1E-07 63.8 7.9 89 160-252 161-264 (444)
283 TIGR01425 SRP54_euk signal rec 96.0 0.41 9E-06 53.6 18.3 38 160-198 99-136 (429)
284 PF13306 LRR_5: Leucine rich r 96.0 0.017 3.6E-07 53.8 6.5 115 517-638 10-128 (129)
285 COG2884 FtsE Predicted ATPase 96.0 0.039 8.5E-07 52.9 8.7 123 160-286 27-205 (223)
286 cd01136 ATPase_flagellum-secre 95.9 0.027 5.9E-07 60.6 8.7 90 160-252 68-171 (326)
287 KOG0731 AAA+-type ATPase conta 95.9 0.046 9.9E-07 64.4 11.0 171 141-332 312-520 (774)
288 PRK09361 radB DNA repair and r 95.9 0.042 9.2E-07 56.9 9.9 46 160-207 22-67 (225)
289 COG1419 FlhF Flagellar GTP-bin 95.9 0.063 1.4E-06 58.5 11.1 71 149-220 187-264 (407)
290 PRK15455 PrkA family serine pr 95.9 0.011 2.4E-07 67.1 5.7 48 140-187 76-129 (644)
291 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.042 9.1E-07 57.2 9.3 97 160-258 68-180 (274)
292 PRK08149 ATP synthase SpaL; Va 95.9 0.029 6.3E-07 62.6 8.7 89 160-252 150-253 (428)
293 PRK05922 type III secretion sy 95.8 0.032 6.9E-07 62.3 8.9 91 159-252 155-259 (434)
294 TIGR03498 FliI_clade3 flagella 95.8 0.023 4.9E-07 63.5 7.7 90 160-252 139-242 (418)
295 PRK06547 hypothetical protein; 95.8 0.014 3E-07 57.2 5.3 35 152-186 6-40 (172)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.028 6.1E-07 53.4 7.3 110 160-289 25-138 (144)
297 cd01120 RecA-like_NTPases RecA 95.8 0.051 1.1E-06 52.9 9.5 39 163-202 1-39 (165)
298 TIGR03305 alt_F1F0_F1_bet alte 95.8 0.036 7.8E-07 62.1 9.1 92 160-252 137-244 (449)
299 cd03214 ABC_Iron-Siderophores_ 95.8 0.024 5.3E-07 56.3 7.1 122 160-286 24-166 (180)
300 cd01394 radB RadB. The archaea 95.8 0.081 1.8E-06 54.5 11.2 43 160-203 18-60 (218)
301 KOG1969 DNA replication checkp 95.8 0.019 4.1E-07 65.9 6.8 75 160-252 325-399 (877)
302 PTZ00494 tuzin-like protein; P 95.7 1.9 4.1E-05 47.5 21.1 162 139-308 370-545 (664)
303 PRK04040 adenylate kinase; Pro 95.7 0.028 6.2E-07 55.9 7.3 47 161-217 2-48 (188)
304 TIGR00959 ffh signal recogniti 95.7 0.06 1.3E-06 60.6 10.6 89 159-250 97-192 (428)
305 cd03216 ABC_Carb_Monos_I This 95.7 0.013 2.7E-07 57.2 4.7 119 160-286 25-150 (163)
306 PRK12678 transcription termina 95.7 0.03 6.5E-07 63.5 8.0 93 160-252 415-515 (672)
307 COG0542 clpA ATP-binding subun 95.7 0.015 3.3E-07 68.8 6.0 158 141-307 171-346 (786)
308 PRK11889 flhF flagellar biosyn 95.7 0.044 9.5E-07 59.7 9.0 38 160-198 240-277 (436)
309 PTZ00185 ATPase alpha subunit; 95.7 0.058 1.3E-06 60.6 10.1 92 160-252 188-301 (574)
310 COG1875 NYN ribonuclease and A 95.7 0.044 9.4E-07 58.0 8.5 137 141-279 225-389 (436)
311 TIGR02238 recomb_DMC1 meiotic 95.7 0.064 1.4E-06 58.0 10.3 90 160-251 95-202 (313)
312 PRK09270 nucleoside triphospha 95.7 0.018 4E-07 59.6 5.9 29 159-187 31-59 (229)
313 PF06309 Torsin: Torsin; Inte 95.6 0.11 2.5E-06 46.8 9.9 45 141-185 26-77 (127)
314 COG0563 Adk Adenylate kinase a 95.6 0.025 5.5E-07 55.5 6.4 24 163-186 2-25 (178)
315 PRK07196 fliI flagellum-specif 95.6 0.04 8.6E-07 61.7 8.7 90 159-252 153-257 (434)
316 PRK12724 flagellar biosynthesi 95.6 0.056 1.2E-06 59.8 9.6 83 161-248 223-307 (432)
317 KOG0728 26S proteasome regulat 95.6 0.34 7.4E-06 48.3 13.9 145 141-307 147-331 (404)
318 PRK06835 DNA replication prote 95.6 0.022 4.7E-07 61.9 6.4 101 162-278 184-289 (329)
319 PHA00729 NTP-binding motif con 95.6 0.017 3.8E-07 58.2 5.2 36 151-186 7-42 (226)
320 TIGR01039 atpD ATP synthase, F 95.6 0.056 1.2E-06 60.5 9.7 92 160-252 142-249 (461)
321 TIGR01069 mutS2 MutS2 family p 95.6 0.015 3.2E-07 70.8 5.6 173 161-345 322-510 (771)
322 TIGR01040 V-ATPase_V1_B V-type 95.6 0.046 1E-06 60.9 8.9 93 160-252 140-259 (466)
323 cd01393 recA_like RecA is a b 95.6 0.076 1.7E-06 55.0 10.3 49 160-208 18-71 (226)
324 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.032 6.9E-07 55.7 7.0 23 163-185 1-23 (183)
325 PRK10733 hflB ATP-dependent me 95.5 0.11 2.3E-06 62.6 12.5 146 162-329 186-356 (644)
326 PRK15429 formate hydrogenlyase 95.5 0.33 7.1E-06 59.4 17.1 45 141-185 377-423 (686)
327 KOG2035 Replication factor C, 95.5 0.045 9.8E-07 55.6 7.6 212 138-362 11-257 (351)
328 TIGR02236 recomb_radA DNA repa 95.5 0.091 2E-06 57.4 11.0 57 160-217 94-155 (310)
329 PRK09099 type III secretion sy 95.5 0.038 8.2E-07 62.0 8.0 90 159-252 161-265 (441)
330 cd03115 SRP The signal recogni 95.5 0.05 1.1E-06 53.7 8.2 25 163-187 2-26 (173)
331 cd03222 ABC_RNaseL_inhibitor T 95.5 0.025 5.5E-07 55.6 5.9 112 159-291 23-145 (177)
332 COG3640 CooC CO dehydrogenase 95.5 0.026 5.6E-07 56.1 5.8 51 163-220 2-52 (255)
333 TIGR01041 ATP_syn_B_arch ATP s 95.5 0.051 1.1E-06 61.3 9.0 93 160-252 140-250 (458)
334 PF00485 PRK: Phosphoribulokin 95.5 0.012 2.5E-07 59.4 3.6 25 163-187 1-25 (194)
335 PF13238 AAA_18: AAA domain; P 95.5 0.012 2.5E-07 54.8 3.3 22 164-185 1-22 (129)
336 PRK05688 fliI flagellum-specif 95.5 0.039 8.4E-07 61.9 7.9 89 160-252 167-270 (451)
337 cd02019 NK Nucleoside/nucleoti 95.5 0.013 2.9E-07 47.4 3.2 23 163-185 1-23 (69)
338 PF08423 Rad51: Rad51; InterP 95.5 0.16 3.5E-06 53.3 12.2 89 161-251 38-144 (256)
339 PRK14974 cell division protein 95.4 0.13 2.8E-06 55.9 11.6 57 160-218 139-197 (336)
340 KOG3864 Uncharacterized conser 95.4 0.0024 5.1E-08 61.7 -1.5 70 865-949 121-190 (221)
341 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.013 2.8E-07 59.9 3.7 117 160-283 30-159 (222)
342 TIGR02858 spore_III_AA stage I 95.4 0.069 1.5E-06 56.3 9.2 125 150-281 99-232 (270)
343 COG4608 AppF ABC-type oligopep 95.4 0.05 1.1E-06 55.8 7.8 122 160-286 38-178 (268)
344 cd01131 PilT Pilus retraction 95.4 0.013 2.8E-07 59.2 3.6 107 162-279 2-110 (198)
345 COG1224 TIP49 DNA helicase TIP 95.4 0.15 3.2E-06 53.9 11.2 53 141-193 40-97 (450)
346 PRK06936 type III secretion sy 95.4 0.048 1.1E-06 60.9 8.3 89 160-252 161-264 (439)
347 PRK07594 type III secretion sy 95.4 0.043 9.3E-07 61.4 7.9 90 159-252 153-257 (433)
348 PRK04301 radA DNA repair and r 95.4 0.14 3E-06 56.0 11.9 57 160-217 101-162 (317)
349 KOG0730 AAA+-type ATPase [Post 95.4 0.18 3.9E-06 57.8 12.6 28 160-187 467-494 (693)
350 PLN03187 meiotic recombination 95.4 0.1 2.3E-06 56.8 10.6 57 161-218 126-187 (344)
351 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.16 3.5E-06 52.9 11.7 49 160-211 20-68 (237)
352 PRK06793 fliI flagellum-specif 95.3 0.048 1E-06 61.0 8.0 90 160-252 155-258 (432)
353 TIGR03497 FliI_clade2 flagella 95.3 0.04 8.7E-07 61.6 7.4 90 159-252 135-239 (413)
354 PRK07721 fliI flagellum-specif 95.3 0.051 1.1E-06 61.3 8.3 91 159-252 156-260 (438)
355 PF13481 AAA_25: AAA domain; P 95.3 0.1 2.3E-06 52.5 9.9 52 162-215 33-93 (193)
356 PRK05480 uridine/cytidine kina 95.3 0.017 3.7E-07 59.0 4.2 27 159-185 4-30 (209)
357 PRK04296 thymidine kinase; Pro 95.3 0.018 3.8E-07 57.7 4.1 109 162-278 3-116 (190)
358 COG2019 AdkA Archaeal adenylat 95.3 0.11 2.3E-06 48.9 8.6 46 161-217 4-49 (189)
359 cd03243 ABC_MutS_homologs The 95.3 0.013 2.8E-07 59.5 3.1 23 162-184 30-52 (202)
360 TIGR03324 alt_F1F0_F1_al alter 95.3 0.058 1.3E-06 61.0 8.4 91 160-252 161-266 (497)
361 cd03283 ABC_MutS-like MutS-lik 95.3 0.023 5E-07 57.2 4.9 24 162-185 26-49 (199)
362 PRK11608 pspF phage shock prot 95.3 0.12 2.5E-06 56.7 10.7 44 141-184 7-52 (326)
363 PRK12723 flagellar biosynthesi 95.2 0.079 1.7E-06 58.8 9.3 87 160-251 173-265 (388)
364 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 57.8 3.6 26 161-186 3-28 (182)
365 PF07728 AAA_5: AAA domain (dy 95.2 0.037 8.1E-07 52.3 5.9 43 164-210 2-44 (139)
366 KOG3864 Uncharacterized conser 95.2 0.0053 1.1E-07 59.3 0.1 44 841-884 123-166 (221)
367 TIGR03496 FliI_clade1 flagella 95.2 0.053 1.1E-06 60.7 7.8 89 160-252 136-239 (411)
368 KOG0729 26S proteasome regulat 95.2 0.061 1.3E-06 53.9 7.3 47 141-187 178-237 (435)
369 TIGR00235 udk uridine kinase. 95.2 0.019 4.1E-07 58.5 4.1 27 160-186 5-31 (207)
370 PRK06762 hypothetical protein; 95.2 0.019 4.2E-07 56.2 3.9 25 161-185 2-26 (166)
371 PRK07667 uridine kinase; Provi 95.1 0.029 6.2E-07 56.4 5.2 38 150-187 4-43 (193)
372 COG0468 RecA RecA/RadA recombi 95.1 0.1 2.2E-06 54.7 9.3 89 160-251 59-152 (279)
373 COG0464 SpoVK ATPases of the A 95.1 0.14 3.1E-06 59.9 11.8 149 160-328 275-445 (494)
374 COG1157 FliI Flagellar biosynt 95.1 0.088 1.9E-06 57.1 8.8 90 159-252 161-265 (441)
375 COG1428 Deoxynucleoside kinase 95.1 0.04 8.7E-07 54.1 5.7 38 161-202 4-41 (216)
376 TIGR02239 recomb_RAD51 DNA rep 95.1 0.16 3.5E-06 55.1 11.1 58 160-218 95-157 (316)
377 PTZ00035 Rad51 protein; Provis 95.1 0.22 4.7E-06 54.6 12.1 58 160-218 117-179 (337)
378 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.046 1E-06 52.9 6.3 123 161-290 25-152 (157)
379 CHL00059 atpA ATP synthase CF1 95.1 0.059 1.3E-06 60.6 7.8 91 160-252 140-245 (485)
380 KOG1970 Checkpoint RAD17-RFC c 95.1 0.14 3E-06 57.3 10.4 41 147-187 89-136 (634)
381 PRK04196 V-type ATP synthase s 95.1 0.082 1.8E-06 59.9 9.0 93 160-252 142-252 (460)
382 cd03230 ABC_DR_subfamily_A Thi 95.1 0.087 1.9E-06 51.9 8.2 123 160-290 25-167 (173)
383 PF10236 DAP3: Mitochondrial r 95.0 1.4 3E-05 47.8 18.0 46 288-333 258-306 (309)
384 PTZ00301 uridine kinase; Provi 95.0 0.023 5E-07 57.5 4.0 27 161-187 3-29 (210)
385 PF13671 AAA_33: AAA domain; P 95.0 0.019 4E-07 54.6 3.3 24 163-186 1-24 (143)
386 PRK10463 hydrogenase nickel in 95.0 0.037 8E-07 58.2 5.6 40 148-187 91-130 (290)
387 TIGR00554 panK_bact pantothena 95.0 0.07 1.5E-06 56.7 7.7 28 159-186 60-87 (290)
388 PF01583 APS_kinase: Adenylyls 95.0 0.03 6.5E-07 53.1 4.5 28 161-188 2-29 (156)
389 TIGR01026 fliI_yscN ATPase Fli 95.0 0.066 1.4E-06 60.5 7.9 90 160-252 162-265 (440)
390 COG4088 Predicted nucleotide k 95.0 0.032 7E-07 54.0 4.5 26 162-187 2-27 (261)
391 PRK05022 anaerobic nitric oxid 95.0 0.29 6.3E-06 57.3 13.6 63 138-201 185-249 (509)
392 cd02025 PanK Pantothenate kina 94.9 0.1 2.2E-06 53.6 8.5 25 163-187 1-25 (220)
393 PRK03839 putative kinase; Prov 94.9 0.022 4.8E-07 56.6 3.6 24 163-186 2-25 (180)
394 COG0572 Udk Uridine kinase [Nu 94.9 0.025 5.5E-07 56.3 3.9 28 160-187 7-34 (218)
395 CHL00060 atpB ATP synthase CF1 94.9 0.12 2.5E-06 58.5 9.5 92 160-252 160-274 (494)
396 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 5.1E-07 56.9 3.9 26 160-185 2-27 (188)
397 PF08433 KTI12: Chromatin asso 94.9 0.081 1.7E-06 55.8 7.9 26 162-187 2-27 (270)
398 cd03223 ABCD_peroxisomal_ALDP 94.9 0.099 2.1E-06 51.1 8.1 123 160-291 26-160 (166)
399 KOG0652 26S proteasome regulat 94.9 0.59 1.3E-05 47.0 13.2 46 141-186 172-230 (424)
400 PF00154 RecA: recA bacterial 94.9 0.11 2.4E-06 55.7 9.0 85 161-252 53-143 (322)
401 cd03247 ABCC_cytochrome_bd The 94.9 0.07 1.5E-06 52.9 7.1 27 160-186 27-53 (178)
402 PRK08472 fliI flagellum-specif 94.9 0.099 2.1E-06 58.6 8.8 90 159-252 155-258 (434)
403 PRK13343 F0F1 ATP synthase sub 94.9 0.081 1.8E-06 60.1 8.2 91 160-252 161-266 (502)
404 PRK00409 recombination and DNA 94.9 0.094 2E-06 64.1 9.4 166 160-345 326-515 (782)
405 cd03228 ABCC_MRP_Like The MRP 94.8 0.081 1.8E-06 52.0 7.3 27 160-186 27-53 (171)
406 PRK08533 flagellar accessory p 94.8 0.21 4.5E-06 51.7 10.6 54 160-217 23-76 (230)
407 PF00910 RNA_helicase: RNA hel 94.8 0.032 6.9E-07 49.9 4.0 25 164-188 1-25 (107)
408 PF03205 MobB: Molybdopterin g 94.8 0.048 1.1E-06 51.3 5.4 38 162-200 1-39 (140)
409 cd01134 V_A-ATPase_A V/A-type 94.8 0.16 3.5E-06 54.6 9.7 89 160-252 156-266 (369)
410 PLN03186 DNA repair protein RA 94.8 0.21 4.7E-06 54.5 11.1 58 160-218 122-184 (342)
411 cd00544 CobU Adenosylcobinamid 94.8 0.094 2E-06 51.1 7.5 82 163-250 1-83 (169)
412 PF13306 LRR_5: Leucine rich r 94.8 0.047 1E-06 50.7 5.3 105 534-644 3-111 (129)
413 PRK04328 hypothetical protein; 94.7 0.14 3.1E-06 53.6 9.3 54 160-217 22-75 (249)
414 PRK07960 fliI flagellum-specif 94.7 0.063 1.4E-06 60.0 6.8 90 160-252 174-277 (455)
415 cd02027 APSK Adenosine 5'-phos 94.7 0.27 5.9E-06 47.0 10.4 24 163-186 1-24 (149)
416 TIGR03574 selen_PSTK L-seryl-t 94.7 0.1 2.2E-06 55.0 8.2 25 163-187 1-25 (249)
417 TIGR00962 atpA proton transloc 94.7 0.086 1.9E-06 60.3 7.9 91 160-252 160-265 (501)
418 COG0541 Ffh Signal recognition 94.7 2.2 4.8E-05 47.0 18.0 57 160-218 99-157 (451)
419 PTZ00088 adenylate kinase 1; P 94.7 0.039 8.5E-07 56.7 4.8 25 162-186 7-31 (229)
420 PRK00625 shikimate kinase; Pro 94.7 0.027 5.8E-07 55.2 3.4 24 163-186 2-25 (173)
421 PF02562 PhoH: PhoH-like prote 94.7 0.043 9.3E-07 54.8 4.8 51 144-196 4-55 (205)
422 TIGR00390 hslU ATP-dependent p 94.7 0.055 1.2E-06 59.6 6.0 47 141-187 13-73 (441)
423 PRK09281 F0F1 ATP synthase sub 94.6 0.12 2.6E-06 59.1 8.9 91 160-252 161-266 (502)
424 TIGR00064 ftsY signal recognit 94.6 0.25 5.5E-06 52.3 10.7 40 159-199 70-109 (272)
425 PRK06820 type III secretion sy 94.6 0.15 3.3E-06 57.2 9.4 89 160-252 162-265 (440)
426 cd01121 Sms Sms (bacterial rad 94.6 0.13 2.9E-06 57.0 8.8 86 161-251 82-169 (372)
427 COG0465 HflB ATP-dependent Zn 94.6 0.13 2.9E-06 59.4 9.0 47 141-187 151-209 (596)
428 PRK08699 DNA polymerase III su 94.5 0.4 8.7E-06 52.2 12.3 163 161-332 21-202 (325)
429 PF05659 RPW8: Arabidopsis bro 94.5 0.37 8E-06 45.4 10.4 106 13-131 9-114 (147)
430 TIGR00150 HI0065_YjeE ATPase, 94.5 0.064 1.4E-06 49.5 5.2 41 147-187 6-48 (133)
431 KOG0927 Predicted transporter 94.4 0.066 1.4E-06 59.7 6.0 59 230-291 231-292 (614)
432 TIGR02546 III_secr_ATP type II 94.4 0.13 2.8E-06 58.0 8.6 91 159-252 143-247 (422)
433 cd01878 HflX HflX subfamily. 94.4 0.075 1.6E-06 54.0 6.2 57 114-185 9-65 (204)
434 COG0396 sufC Cysteine desulfur 94.4 0.15 3.2E-06 50.9 7.7 58 227-286 151-212 (251)
435 smart00534 MUTSac ATPase domai 94.4 0.028 6E-07 56.1 2.9 22 163-184 1-22 (185)
436 PRK00131 aroK shikimate kinase 94.4 0.038 8.3E-07 54.6 3.9 26 161-186 4-29 (175)
437 PRK07132 DNA polymerase III su 94.4 1.1 2.5E-05 48.0 15.1 164 149-335 5-184 (299)
438 KOG3347 Predicted nucleotide k 94.4 0.032 6.8E-07 51.1 2.8 34 162-201 8-41 (176)
439 cd02023 UMPK Uridine monophosp 94.4 0.03 6.6E-07 56.6 3.2 23 163-185 1-23 (198)
440 PRK05201 hslU ATP-dependent pr 94.4 0.18 3.8E-06 55.8 9.0 74 141-214 16-106 (443)
441 PRK06067 flagellar accessory p 94.4 0.3 6.5E-06 50.8 10.7 86 160-250 24-130 (234)
442 PF07724 AAA_2: AAA domain (Cd 94.4 0.062 1.3E-06 52.5 5.1 42 161-203 3-45 (171)
443 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.055 1.2E-06 54.6 4.9 120 160-285 28-158 (204)
444 TIGR02322 phosphon_PhnN phosph 94.3 0.037 8.1E-07 54.9 3.5 25 162-186 2-26 (179)
445 TIGR02655 circ_KaiC circadian 94.2 0.35 7.5E-06 56.3 11.8 85 160-250 262-363 (484)
446 PRK10751 molybdopterin-guanine 94.2 0.048 1E-06 52.9 3.9 28 160-187 5-32 (173)
447 cd02020 CMPK Cytidine monophos 94.2 0.036 7.9E-07 52.9 3.2 24 163-186 1-24 (147)
448 cd01124 KaiC KaiC is a circadi 94.2 0.24 5.3E-06 49.4 9.3 45 163-210 1-45 (187)
449 PRK13949 shikimate kinase; Pro 94.2 0.04 8.7E-07 53.9 3.5 25 162-186 2-26 (169)
450 PRK14528 adenylate kinase; Pro 94.2 0.13 2.9E-06 51.2 7.3 25 162-186 2-26 (186)
451 PHA02774 E1; Provisional 94.2 0.28 6.1E-06 56.2 10.4 49 147-199 419-469 (613)
452 PRK14532 adenylate kinase; Pro 94.2 0.13 2.9E-06 51.4 7.3 22 164-185 3-24 (188)
453 cd03280 ABC_MutS2 MutS2 homolo 94.2 0.063 1.4E-06 54.3 4.9 21 162-182 29-49 (200)
454 PRK00279 adk adenylate kinase; 94.2 0.18 3.9E-06 51.7 8.3 24 163-186 2-25 (215)
455 TIGR02030 BchI-ChlI magnesium 94.2 0.075 1.6E-06 57.9 5.7 47 139-185 3-49 (337)
456 PF12061 DUF3542: Protein of u 94.2 0.18 3.8E-06 52.1 7.8 102 13-127 296-400 (402)
457 PRK05439 pantothenate kinase; 94.1 0.27 5.9E-06 52.7 9.7 29 159-187 84-112 (311)
458 PF06068 TIP49: TIP49 C-termin 94.1 0.063 1.4E-06 57.6 4.9 60 141-202 25-89 (398)
459 PRK13765 ATP-dependent proteas 94.1 0.1 2.2E-06 61.8 7.0 75 141-219 32-107 (637)
460 PRK06217 hypothetical protein; 94.1 0.044 9.4E-07 54.6 3.6 25 162-186 2-26 (183)
461 COG1066 Sms Predicted ATP-depe 94.1 0.22 4.9E-06 53.9 8.9 86 161-252 93-180 (456)
462 PRK00889 adenylylsulfate kinas 94.1 0.058 1.3E-06 53.3 4.4 28 160-187 3-30 (175)
463 PF03308 ArgK: ArgK protein; 94.0 0.12 2.7E-06 52.7 6.6 56 148-204 14-73 (266)
464 COG0237 CoaE Dephospho-CoA kin 94.0 0.09 1.9E-06 52.6 5.5 23 161-183 2-24 (201)
465 PF13245 AAA_19: Part of AAA d 94.0 0.13 2.9E-06 42.4 5.6 26 160-185 9-35 (76)
466 cd02024 NRK1 Nicotinamide ribo 94.0 0.04 8.8E-07 54.4 3.0 23 163-185 1-23 (187)
467 TIGR00073 hypB hydrogenase acc 94.0 0.06 1.3E-06 54.8 4.4 33 154-186 15-47 (207)
468 TIGR00041 DTMP_kinase thymidyl 94.0 0.33 7.1E-06 48.9 9.8 26 162-187 4-29 (195)
469 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.027 5.9E-07 57.8 1.8 172 160-341 29-218 (222)
470 cd03284 ABC_MutS1 MutS1 homolo 93.9 0.075 1.6E-06 54.3 5.0 22 162-183 31-52 (216)
471 TIGR00176 mobB molybdopterin-g 93.9 0.074 1.6E-06 51.0 4.6 34 163-197 1-35 (155)
472 PRK13947 shikimate kinase; Pro 93.9 0.048 1E-06 53.7 3.4 24 163-186 3-26 (171)
473 cd02028 UMPK_like Uridine mono 93.9 0.048 1E-06 54.0 3.4 25 163-187 1-25 (179)
474 PF00560 LRR_1: Leucine Rich R 93.9 0.029 6.3E-07 33.6 1.1 21 544-564 1-21 (22)
475 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.48 1E-05 49.2 11.0 53 160-217 19-72 (229)
476 CHL00081 chlI Mg-protoporyphyr 93.9 0.073 1.6E-06 58.0 5.0 52 136-187 13-64 (350)
477 PRK09519 recA DNA recombinatio 93.9 0.22 4.8E-06 59.8 9.2 84 160-251 59-149 (790)
478 cd01122 GP4d_helicase GP4d_hel 93.9 0.3 6.4E-06 52.2 9.7 52 161-214 30-81 (271)
479 COG0529 CysC Adenylylsulfate k 93.9 0.36 7.8E-06 46.0 8.7 32 156-187 18-49 (197)
480 TIGR03263 guanyl_kin guanylate 93.8 0.044 9.6E-07 54.4 3.1 24 162-185 2-25 (180)
481 cd00227 CPT Chloramphenicol (C 93.8 0.055 1.2E-06 53.5 3.6 25 162-186 3-27 (175)
482 CHL00206 ycf2 Ycf2; Provisiona 93.8 0.36 7.8E-06 62.4 11.3 28 160-187 1629-1656(2281)
483 cd02021 GntK Gluconate kinase 93.8 0.045 9.8E-07 52.5 2.9 23 163-185 1-23 (150)
484 cd00561 CobA_CobO_BtuR ATP:cor 93.8 0.24 5.1E-06 47.3 7.7 115 162-279 3-139 (159)
485 COG1703 ArgK Putative periplas 93.8 0.12 2.6E-06 53.6 5.9 60 150-209 38-100 (323)
486 PRK14530 adenylate kinase; Pro 93.8 0.054 1.2E-06 55.5 3.7 25 162-186 4-28 (215)
487 KOG1532 GTPase XAB1, interacts 93.8 0.058 1.3E-06 54.5 3.5 29 160-188 18-46 (366)
488 PRK13407 bchI magnesium chelat 93.8 0.087 1.9E-06 57.3 5.3 49 137-185 5-53 (334)
489 PF05970 PIF1: PIF1-like helic 93.8 0.12 2.7E-06 57.5 6.7 100 148-252 9-114 (364)
490 PRK05057 aroK shikimate kinase 93.8 0.058 1.3E-06 53.0 3.6 26 161-186 4-29 (172)
491 KOG0727 26S proteasome regulat 93.7 0.38 8.2E-06 48.1 9.0 47 141-187 156-215 (408)
492 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.44 9.6E-06 50.3 10.5 40 160-200 35-74 (259)
493 PF06745 KaiC: KaiC; InterPro 93.7 0.15 3.4E-06 52.7 7.0 89 160-252 18-127 (226)
494 TIGR02974 phageshock_pspF psp 93.7 0.16 3.5E-06 55.6 7.3 45 142-186 1-47 (329)
495 PF00560 LRR_1: Leucine Rich R 93.7 0.033 7.2E-07 33.4 1.1 20 589-608 1-20 (22)
496 KOG0924 mRNA splicing factor A 93.7 0.22 4.7E-06 56.8 8.1 121 149-278 361-510 (1042)
497 KOG0736 Peroxisome assembly fa 93.6 0.34 7.3E-06 56.5 9.7 165 144-331 405-599 (953)
498 cd00464 SK Shikimate kinase (S 93.6 0.06 1.3E-06 51.8 3.5 23 164-186 2-24 (154)
499 PRK07165 F0F1 ATP synthase sub 93.6 0.28 6.1E-06 55.6 9.0 91 159-252 141-245 (507)
500 cd00071 GMPK Guanosine monopho 93.5 0.053 1.1E-06 51.0 2.8 24 163-186 1-24 (137)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-84 Score=765.56 Aligned_cols=789 Identities=23% Similarity=0.324 Sum_probs=594.4
Q ss_pred HHHHHHhhhhhhhhhhhcceecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 038902 14 VASRTVDGLGNRVEEQIGYLLDYDDNLEGFRTRAGQLEARKNDVLGQVDKARDNNEKIKEAVLLWLAKAIQIEIDKEMME 93 (997)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~w~~~~~~~~~~~e~~~ 93 (997)
.++..++++...+.+++..+.++++.+..+++++..|+.+ +++++.+ +.....++.|...+++++|++|+..
T Consensus 4 ~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~-------l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~ 75 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSA-------LEDLDAK-RDDLERRVNWEEDVGDLVYLAEDII 75 (889)
T ss_pred EEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999998888888888888888887 4455555 3457788999999999999999887
Q ss_pred HHHhhc------------------CCCCcCC-CcchhHHHHhhHHHHHHHHHHHHHHhcCCCCccc--------------
Q 038902 94 EKIEKN------------------KGPCHTW-QLDWRFRCQLSELAKDKITKIDELMASRDIHSVS-------------- 140 (997)
Q Consensus 94 ~~~~~~------------------~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------- 140 (997)
+.+.-+ .-|+... ...+..-+.+++++.++.+.++.+..++.|..+.
T Consensus 76 ~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~ 155 (889)
T KOG4658|consen 76 WLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPI 155 (889)
T ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCC
Confidence 665311 1232222 2344445667888888888888876554332221
Q ss_pred --cc-cccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh-hhCCCce-EEEEEccCCCHHHHHHHHHHHh
Q 038902 141 --DL-THSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID-TIAPHDK-AHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 --~~-~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.. ||.+..++++++.|.+++.++++|+||||+||||||+.++|+.. ...+||. +||.||+.++..+++.+|+..+
T Consensus 156 ~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 156 QSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERL 235 (889)
T ss_pred CccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHh
Confidence 12 99999999999999988889999999999999999999999998 8889999 9999999999999999999999
Q ss_pred CCCCchh---hHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhc-CCC-eeEE
Q 038902 216 KFKIEEE---DELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSK-MSD-VTVQ 290 (997)
Q Consensus 216 ~~~~~~~---~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~~-~~~~ 290 (997)
+...+.. ..++.+..+.+.|.. +||+|||||||+..+|+.++.++|...+||+|++|||++.||.. +++ ..++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~--krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEG--KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhcc--CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 8754333 336778888999987 99999999999999999999999999999999999999999998 777 8999
Q ss_pred cCCCCHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHHhc
Q 038902 291 IEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRES 367 (997)
Q Consensus 291 l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~~~ 367 (997)
+++|+++|||+||++.+|.. ..+.++++|++|+++|+|+|||++++|+.|+.+.. +++|+++.+. +.+.
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-------~~eW~~~~~~-l~s~ 385 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-------VQEWRRALNV-LKSS 385 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-------HHHHHHHHcc-cccc
Confidence 99999999999999999833 34558999999999999999999999999999998 7899999999 8777
Q ss_pred cccccccCcccccceeeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHHh
Q 038902 368 RDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSIVEDLRN 447 (997)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~ 447 (997)
...+.+.+.+.++.+|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+....+.+.+.|..|+.+|++
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~ 465 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVR 465 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHH
Confidence 55566677789999999999999999999999999999999999999999999999998755556666777889999999
Q ss_pred cccccccc---CCCeEEecchhHHHHHHhhc-----ccCceeccCCccccCCChhh-hcCceEEEcccCCCcCCCCCCCC
Q 038902 448 RKILSYRE---GEGTYRIHDNTRIVVKYFAT-----KEGNNLKSEAGLKKGWPQED-LKEYKKISLMDSGINKLPDEPMC 518 (997)
Q Consensus 448 ~~ll~~~~---~~~~~~mHdli~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~L~l~~~~~~~l~~~~~~ 518 (997)
++|++..+ ...+|+|||++|++|.++++ +++.++..+.+.. ..|... +..+|++++.++.+..++....+
T Consensus 466 ~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~-~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~ 544 (889)
T KOG4658|consen 466 ASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS-EIPQVKSWNSVRRMSLMNNKIEHIAGSSEN 544 (889)
T ss_pred HHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc-ccccccchhheeEEEEeccchhhccCCCCC
Confidence 99998765 34689999999999999999 7776666654443 345444 78999999999999999998999
Q ss_pred CCccEEEccCCC--CCCCChhHhhcCccccEEEecCc-ccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEE
Q 038902 519 PQLLTLFLQHNA--FDKIPPGFFEHMREINFLDLSYT-NISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILI 594 (997)
Q Consensus 519 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~ 594 (997)
++|++|.+.+|. +..++..+|..++.|++||+++| .+.++|.+++.|.|||||+++++.+..+| .+++|.+|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 999999999996 78888899999999999999977 57799999999999999999999999999 999999999999
Q ss_pred ecCCcc-cccCccccCCCCCcEEeccCCcc-CCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCC
Q 038902 595 LRGSSI-RELPKGLERWINLKLLDLSNNIF-LQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRL 672 (997)
Q Consensus 595 L~~~~l-~~lp~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 672 (997)
+..+.- ..+|.....|++|++|.+..... .+..-.+.+.++.+|+.+.+..+ +...+..+..++.|
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~------------s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS------------SVLLLEDLLGMTRL 692 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc------------hhHhHhhhhhhHHH
Confidence 998753 34455555689999998876541 11111111334444444444221 11112233333333
Q ss_pred CEE----EEEeccccccccccCCCCCCccEEEEEecCccc-cccccceEEeecCcccchHHHHH-hhccccceecCCCCC
Q 038902 673 TVL----YIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW-EIASTRSMHLKNISTPLADWVKL-LLEKTEDLTLTRSRD 746 (997)
Q Consensus 673 ~~L----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 746 (997)
.++ .+.++.... .......+.+|+.|.+.++...- .. . ........ .++++..+.+.+|..
T Consensus 693 ~~~~~~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e~~~--------~----~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRT-LISSLGSLGNLEELSILDCGISEIVI--------E----WEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HHHhHhhhhcccccce-eecccccccCcceEEEEcCCCchhhc--------c----cccccchhhhHHHHHHHHhhcccc
Confidence 322 221211111 11222345667777776655410 00 0 00000000 144555556656665
Q ss_pred CcccccccccCCCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhcccccccee-ecC
Q 038902 747 LEDIGAIEVQGLTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLREL-ILE 824 (997)
Q Consensus 747 l~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~ 824 (997)
..+.....| .|+|++|.+..|. +.+++|. ...+..+..+. ..|++++.+ .+.
T Consensus 760 ~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i----------------------~~f~~~~~l~~~~ 813 (889)
T KOG4658|consen 760 LRDLTWLLF--APHLTSLSLVSCRLLEDIIPK--LKALLELKELI----------------------LPFNKLEGLRMLC 813 (889)
T ss_pred ccccchhhc--cCcccEEEEecccccccCCCH--HHHhhhcccEE----------------------ecccccccceeee
Confidence 554432222 5788888888888 6665443 33444444322 134455555 466
Q ss_pred CccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC-cchhh
Q 038902 825 GLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC-DRLEE 884 (997)
Q Consensus 825 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c-~~l~~ 884 (997)
+.+.+.++...+. .+++|+.+.+..||++..+ |.+.++.+.+| ..+..
T Consensus 814 ~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~ 862 (889)
T KOG4658|consen 814 SLGGLPQLYWLPL---SFLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEKLKE 862 (889)
T ss_pred cCCCCceeEeccc---CccchhheehhcCcccccC---------ccccccceeccccceee
Confidence 6666666554443 2345888899999888776 66777778876 44443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-65 Score=647.77 Aligned_cols=762 Identities=18% Similarity=0.229 Sum_probs=524.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCC-cchhHHHHhhHHHHHHHHHHHHHHhcCCCCccccccccHHHH
Q 038902 71 IKEAVLLWLAKAIQIEIDKEMMEEKIEKNKGPCHTWQ-LDWRFRCQLSELAKDKITKIDELMASRDIHSVSDLTHSSKAL 149 (997)
Q Consensus 71 ~~~~~~~w~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~gr~~~~ 149 (997)
..+.+++|.+.+.+++.- .++. .++... ++-|+++.+.|.+...........++|||+..+
T Consensus 132 ~~~~~~~w~~al~~~~~~---------------~g~~~~~~~~E---~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l 193 (1153)
T PLN03210 132 TEDEKIQWKQALTDVANI---------------LGYHSQNWPNE---AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHI 193 (1153)
T ss_pred chhHHHHHHHHHHHHhCc---------------CceecCCCCCH---HHHHHHHHHHHHHhhccccCcccccccchHHHH
Confidence 456789999999998631 1111 122222 223444444433332222233445899999999
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEE---ccCC-----------C-HHHHHHHH
Q 038902 150 NSIMKLLK--DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIV---AESS-----------D-LRRIQDKI 211 (997)
Q Consensus 150 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v---~~~~-----------~-~~~~~~~i 211 (997)
+++..++. .+++++|+||||||+||||||+++|++... +|+. +|+.. +... + ...+++++
T Consensus 194 ~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (1153)
T PLN03210 194 AKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAF 271 (1153)
T ss_pred HHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccccchhHHHHHHH
Confidence 99998884 457899999999999999999999998765 7877 77642 1110 1 12344555
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcCCC-eeEE
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKMSD-VTVQ 290 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~-~~~~ 290 (997)
+.++-....... .....+++.+++ +|+||||||||+..+|+.+.....+.++||+||||||++.++..++. ++|+
T Consensus 272 l~~il~~~~~~~--~~~~~~~~~L~~--krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~ 347 (1153)
T PLN03210 272 LSEILDKKDIKI--YHLGAMEERLKH--RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYE 347 (1153)
T ss_pred HHHHhCCCCccc--CCHHHHHHHHhC--CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEE
Confidence 554422211000 012456777886 99999999999999999988777777899999999999999988766 8999
Q ss_pred cCCCCHHHHHHHHHHHcCCC--CChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHHhcc
Q 038902 291 IEELGEEDRLKLFKQIARLP--DSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRESR 368 (997)
Q Consensus 291 l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 368 (997)
++.+++++||++|+++||.. +++.+.+++++|+++|+|+|||++++|++|++++. ++|+.++.+ ++...
T Consensus 348 v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~--------~~W~~~l~~-L~~~~ 418 (1153)
T PLN03210 348 VCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK--------EDWMDMLPR-LRNGL 418 (1153)
T ss_pred ecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCH--------HHHHHHHHH-HHhCc
Confidence 99999999999999999843 35568899999999999999999999999999876 899999999 77532
Q ss_pred ccccccCcccccceeeeecccchh-hhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHHh
Q 038902 369 DIKIEEIPKEEFLGITIGYNELKM-VAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSIVEDLRN 447 (997)
Q Consensus 369 ~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~ 447 (997)
+.++..+|++||++|++ ..|.||+++|+|+.+..++ .+..|++.+.... +..++.|++
T Consensus 419 -------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ 477 (1153)
T PLN03210 419 -------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVD 477 (1153)
T ss_pred -------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHh
Confidence 35788999999999987 6999999999999876553 3666777654321 113889999
Q ss_pred ccccccccCCCeEEecchhHHHHHHhhcccCceeccCCccccCCChhh----------hcCceEEEcccCCCcCCCCCCC
Q 038902 448 RKILSYREGEGTYRIHDNTRIVVKYFATKEGNNLKSEAGLKKGWPQED----------LKEYKKISLMDSGINKLPDEPM 517 (997)
Q Consensus 448 ~~ll~~~~~~~~~~mHdli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~l~~~~~~~l~~~~~ 517 (997)
+||++... ++++|||++|++++.+++.+.- . .+.+...|...+ ..+++.+++.-
T Consensus 478 ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~--~-~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~----------- 541 (1153)
T PLN03210 478 KSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN--E-PGEREFLVDAKDICDVLEDNTGTKKVLGITLDI----------- 541 (1153)
T ss_pred cCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC--C-CCcceeEeCHHHHHHHHHhCcccceeeEEEecc-----------
Confidence 99997654 6799999999999999877641 1 111111222111 11222222221
Q ss_pred CCCccEEEccCCCCCCCChhHhhcCccccEEEecCccc------C-CCCccccccc-cCCEEEcCCCCccCCCcccccCc
Q 038902 518 CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNI------S-TLPGSIECLV-KLRSLRAENTHLEKAPLKKEFKE 589 (997)
Q Consensus 518 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i------~-~lp~~l~~l~-~L~~L~L~~~~l~~lp~~~~l~~ 589 (997)
.....+ .+....|.++++|++|.+.++.. . .+|..+..++ +|++|.+.++.++.+|....+.+
T Consensus 542 -~~~~~~--------~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~ 612 (1153)
T PLN03210 542 -DEIDEL--------HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPEN 612 (1153)
T ss_pred -Ccccee--------eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccC
Confidence 111111 23456688899999998876532 1 4677676664 59999999999999995557889
Q ss_pred ccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCC
Q 038902 590 LVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASL 669 (997)
Q Consensus 590 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 669 (997)
|+.|++.++++..+|.++..+++|+.|++++|..+..+|. ++.+++|++|++++|... ...+..++.+
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L----------~~lp~si~~L 680 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL----------VELPSSIQYL 680 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc----------cccchhhhcc
Confidence 9999999999999998888999999999999887888886 788999999999887422 2334567888
Q ss_pred CCCCEEEEEecc-ccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCc
Q 038902 670 SRLTVLYIHINS-TEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLE 748 (997)
Q Consensus 670 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 748 (997)
++|+.|++++|. +..+|... .+++|+.|++++|.. + ..+|. ...+|+.|+|.+ +.+.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~------L---------~~~p~----~~~nL~~L~L~~-n~i~ 738 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSR------L---------KSFPD----ISTNISWLDLDE-TAIE 738 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCC------c---------ccccc----ccCCcCeeecCC-Cccc
Confidence 999999998764 55555433 356666666665532 0 11221 135677777743 3344
Q ss_pred ccccccccCCCCccEEEEeccCCcccc------chhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceee
Q 038902 749 DIGAIEVQGLTALMTMHLRACSLQRIF------RSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELI 822 (997)
Q Consensus 749 ~~~~~~~~~l~~L~~L~L~~~~l~~~~------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 822 (997)
.++.. + .+++|++|.+.++....+. +......+++|+.|++++|+.+.++| ...+.+++|+.|+
T Consensus 739 ~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--------~si~~L~~L~~L~ 808 (1153)
T PLN03210 739 EFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--------SSIQNLHKLEHLE 808 (1153)
T ss_pred ccccc-c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--------hhhhCCCCCCEEE
Confidence 44421 1 4677888888765421110 11112235678888888887777665 3566788888888
Q ss_pred cCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCC
Q 038902 823 LEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNI 902 (997)
Q Consensus 823 l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l 902 (997)
+++|++++.++... .+++|+.|++++|.+++.++. ..++|++|+++++ .++.++..
T Consensus 809 Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~s-------------- 864 (1153)
T PLN03210 809 IENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPWW-------------- 864 (1153)
T ss_pred CCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChHH--------------
Confidence 88888877764332 577888888888887776521 2367778887763 44443321
Q ss_pred CCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeeccccc----ccccccccccccccceecccc
Q 038902 903 PPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDE----ERKEERADILIQLENLILEDL 978 (997)
Q Consensus 903 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~----~~~~~~~~~l~~L~~L~l~~c 978 (997)
...+++|+.|++++|++|+.+.. ....+++|+.|++.+|++|+.+...... .........+|+...+.+.+|
T Consensus 865 --i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 865 --IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred --HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 23478888999999988888633 3567888888899889888765321100 000112234556666778888
Q ss_pred ccccc
Q 038902 979 TELKT 983 (997)
Q Consensus 979 p~L~~ 983 (997)
.+|..
T Consensus 941 ~~L~~ 945 (1153)
T PLN03210 941 FNLDQ 945 (1153)
T ss_pred cCCCc
Confidence 77754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.6e-42 Score=370.63 Aligned_cols=273 Identities=27% Similarity=0.459 Sum_probs=224.2
Q ss_pred cHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCC--
Q 038902 145 SSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKI-- 219 (997)
Q Consensus 145 r~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~-- 219 (997)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+. +|+++++..+..+++.+|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 78999999999999999999999999777779999 99999999999999999999998773
Q ss_pred --chhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcCCC--eeEEcCCCC
Q 038902 220 --EEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKMSD--VTVQIEELG 295 (997)
Q Consensus 220 --~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~--~~~~l~~L~ 295 (997)
...+.......+.+.|.+ +++||||||||+...|+.+...++....|++||||||+..++..+.. ..|++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD--KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC--TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccchhhhcc--ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 234566788889999997 89999999999999999888887777789999999999999887663 899999999
Q ss_pred HHHHHHHHHHHcCCC---CChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHHhcccccc
Q 038902 296 EEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRESRDIKI 372 (997)
Q Consensus 296 ~~~~~~lf~~~~~~~---~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~ 372 (997)
++||++||++.++.. .++..++.+++|+++|+|+||||+++|++|+.+.. ..+|+.+++. +...... .
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~-------~~~w~~~~~~-l~~~~~~-~ 229 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST-------VDEWEEALEE-LENSLRE-S 229 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS-------SSSHHHHHHH-HHHCHTC-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccc-ccccccc-c
Confidence 999999999999833 35667789999999999999999999999975543 4889999988 6665431 2
Q ss_pred ccCcccccceeeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhcccccccc
Q 038902 373 EEIPKEEFLGITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDV 428 (997)
Q Consensus 373 ~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 428 (997)
......+..++.+||+.||+++|.||.|||+||+++.|+++.++++|+++|+|...
T Consensus 230 ~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 230 RDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 23457789999999999999999999999999999999999999999999999754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.7e-30 Score=327.03 Aligned_cols=438 Identities=16% Similarity=0.117 Sum_probs=246.2
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccC-CCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~ 574 (997)
..++++|++++|.+........+++|++|++++|.+....+..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 3566666666655443222234666666666666665544555666666666666666654 556666666666666666
Q ss_pred CCCccC-CC-cccccCcccEEEecCCccc-ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcc
Q 038902 575 NTHLEK-AP-LKKEFKELVILILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWE 651 (997)
Q Consensus 575 ~~~l~~-lp-~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 651 (997)
+|.+.. +| .++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|..
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l--- 272 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL--- 272 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee---
Confidence 666553 44 6666666666666666655 45666666666666666666644455554 56666666666655421
Q ss_pred cccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCcc-------ccccccceEEeecCc--
Q 038902 652 LEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY-------WEIASTRSMHLKNIS-- 722 (997)
Q Consensus 652 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~L~~L~l~~~~-- 722 (997)
....+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|... ..+++|+.|.++++.
T Consensus 273 -------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 273 -------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred -------eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 1122334455555666666555544333333344555555555555431 144555555555554
Q ss_pred ccchHHHHHhhccccceecCCCCC-----------------------CcccccccccCCCCccEEEEeccCCccccchhh
Q 038902 723 TPLADWVKLLLEKTEDLTLTRSRD-----------------------LEDIGAIEVQGLTALMTMHLRACSLQRIFRSSF 779 (997)
Q Consensus 723 ~~~~~~~~~~l~~L~~L~L~~~~~-----------------------l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~ 779 (997)
+.+|.++.. +++|+.|+++++.- +.......+..+++|+.|++++|.+++..|. .
T Consensus 346 ~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~ 423 (968)
T PLN00113 346 GEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-E 423 (968)
T ss_pred CcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-h
Confidence 344444432 45555555533221 1111112334445555555555554433332 2
Q ss_pred HHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCcc
Q 038902 780 YARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNI 859 (997)
Q Consensus 780 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 859 (997)
+..+++|+.|++++|.....++ .....+++|+.|++++|.-...++. ....++|+.|++++|. +...
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~~~L~~L~ls~n~-l~~~ 490 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRIN--------SRKWDMPSLQMLSLARNKFFGGLPD----SFGSKRLENLDLSRNQ-FSGA 490 (968)
T ss_pred HhcCCCCCEEECcCCcccCccC--------hhhccCCCCcEEECcCceeeeecCc----ccccccceEEECcCCc-cCCc
Confidence 3445555555555543322221 1234566666666666543222211 1134567777777653 3322
Q ss_pred CChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccce
Q 038902 860 FSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKE 939 (997)
Q Consensus 860 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 939 (997)
. +..+.++++|+.|++++|.-...++.. ...+++|++|+|++|. ++.. .+..+.++++|++
T Consensus 491 ~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~----------------~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~ 551 (968)
T PLN00113 491 V-PRKLGSLSELMQLKLSENKLSGEIPDE----------------LSSCKKLVSLDLSHNQ-LSGQ-IPASFSEMPVLSQ 551 (968)
T ss_pred c-ChhhhhhhccCEEECcCCcceeeCChH----------------HcCccCCCEEECCCCc-cccc-CChhHhCcccCCE
Confidence 1 344566777777777776433222211 2357899999999986 4432 2456788999999
Q ss_pred EEeecccccceeecccccccccccccccccccceecccccccccccCC
Q 038902 940 LNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELKTIYNG 987 (997)
Q Consensus 940 L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~~~~ 987 (997)
|++++|.....+ |..+..+++|++|++++|+....++..
T Consensus 552 L~Ls~N~l~~~~---------p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 552 LDLSQNQLSGEI---------PKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EECCCCcccccC---------ChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999888755554 667788899999999999877666643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.1e-29 Score=322.78 Aligned_cols=450 Identities=17% Similarity=0.160 Sum_probs=332.2
Q ss_pred hcCceEEEcccCCCc-CCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccC-CCCccccccccCCEE
Q 038902 496 LKEYKKISLMDSGIN-KLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSL 571 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L 571 (997)
+..++.|++++|.+. .+|... .+++|++|++++|.+....+. ..+++|++|++++|.+. .+|..++++.+|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 678999999988775 677643 789999999999997654442 46899999999999987 779999999999999
Q ss_pred EcCCCCcc-CCC-cccccCcccEEEecCCccc-ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCC
Q 038902 572 RAENTHLE-KAP-LKKEFKELVILILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFG 648 (997)
Q Consensus 572 ~L~~~~l~-~lp-~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 648 (997)
++++|.+. .+| .++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~- 247 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN- 247 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce-
Confidence 99999876 467 8999999999999999876 57899999999999999999877788877 8999999999998763
Q ss_pred CcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCcc-------ccccccceEEeecC
Q 038902 649 NWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY-------WEIASTRSMHLKNI 721 (997)
Q Consensus 649 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~L~~L~l~~~ 721 (997)
.....+..++.+++|+.|++++|.+....+..+..+++|+.|++++|... ..+++|+.|++.++
T Consensus 248 ---------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 248 ---------LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred ---------eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 22344567899999999999999876544445567899999999988762 16788999999998
Q ss_pred c--ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccce
Q 038902 722 S--TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKE 799 (997)
Q Consensus 722 ~--~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 799 (997)
. +.+|.++.. +++|+.|++.++.-...++ ..+..+++|+.|++++|.+....|.. +..+++|+.|++++|.....
T Consensus 319 ~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 319 NFTGKIPVALTS-LPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred ccCCcCChhHhc-CCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEeccc
Confidence 7 567766654 8999999996655333333 46778899999999999977665543 45678899999988865544
Q ss_pred eeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC
Q 038902 800 VFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC 879 (997)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 879 (997)
++ ...+.+++|+.|++++|.-...+ +..+..+++|+.|++++|. +.... +.....+++|+.|++++|
T Consensus 396 ~p--------~~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 396 IP--------KSLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNN-LQGRI-NSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CC--------HHHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCc-ccCcc-ChhhccCCCCcEEECcCc
Confidence 43 34567888888888886532222 1223467888888888763 44432 334456788888888887
Q ss_pred cchhhhhcCCCCCCc-----ccccccCC-C-CCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceee
Q 038902 880 DRLEEIVSSDEPEEK-----PEAAVSNI-P-PPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERII 952 (997)
Q Consensus 880 ~~l~~l~~~~~~~~~-----~~~~l~~l-~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~ 952 (997)
.....++.......- ....+... + ....+++|+.|++++|. +.... +..+.++++|++|+|++|.--..+
T Consensus 463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~- 539 (968)
T PLN00113 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEI-PDELSSCKKLVSLDLSHNQLSGQI- 539 (968)
T ss_pred eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeC-ChHHcCccCCCEEECCCCcccccC-
Confidence 644333321110000 00011111 1 12356788888888875 33322 345677888888888877544333
Q ss_pred cccccccccccccccccccceeccccccccccc
Q 038902 953 SVSDEERKEERADILIQLENLILEDLTELKTIY 985 (997)
Q Consensus 953 ~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~~ 985 (997)
|..+..+++|++|++++|.....++
T Consensus 540 --------p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 540 --------PASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred --------ChhHhCcccCCEEECCCCcccccCC
Confidence 5677788999999999997765554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-26 Score=244.37 Aligned_cols=368 Identities=18% Similarity=0.195 Sum_probs=276.4
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC----CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE----PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l 565 (997)
..|.......+.++.+++.++.+... .-.+..++|++++|.+..+....|.++++|+.+.+.+|.++.+|......
T Consensus 45 ~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 45 ECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHES 124 (873)
T ss_pred cCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccc
Confidence 44544456777788887777765332 24567788999999999998888899999999999999999999887888
Q ss_pred ccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEE
Q 038902 566 VKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 642 (997)
.||+.|+|.+|.|+.+. .+..++.|+.|||+.|.+.++| ..+..=.++++|+|++|. ++.+..+.|..+.+|-+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeee
Confidence 88999999999888876 7888888999999999888886 345566788899998887 6677666678888888888
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc-------cccccccce
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD-------YWEIASTRS 715 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~L~~ 715 (997)
++.+.. +.--...++.+++|+.|++..|.+.......+..+++|+.|.+..|++ +|.+.+++.
T Consensus 204 LsrNri----------ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 204 LSRNRI----------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cccCcc----------cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 877531 122235577888888888888887777666677788888888888876 568888888
Q ss_pred EEeecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecc
Q 038902 716 MHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYC 794 (997)
Q Consensus 716 L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c 794 (997)
|+|+.+. ..+..+-...+.+|+.|+| ..+.+..+.......+++|+.|+|++|.++.+ +...+..+..|++|+++++
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~l-S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDL-SYNAIQRIHIDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eecccchhhhhhcccccccchhhhhcc-chhhhheeecchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhccccc
Confidence 8888877 4443332234788888888 45557777766677788999999999998887 4556777899999999887
Q ss_pred cccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceE
Q 038902 795 YSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQL 874 (997)
Q Consensus 795 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L 874 (997)
. ++.+. +..+.++.+|++|+|+++.---.+-.+...+..+++|+.|.+.+ ++|+.+ +...+.++++||+|
T Consensus 352 s-i~~l~-------e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 352 S-IDHLA-------EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHL 421 (873)
T ss_pred c-hHHHH-------hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeec-chhhhccCccccee
Confidence 4 22221 12456788999999988532111223344455789999999998 688887 55677889999999
Q ss_pred eecCCc
Q 038902 875 SFQKCD 880 (997)
Q Consensus 875 ~l~~c~ 880 (997)
++.+..
T Consensus 422 dL~~Na 427 (873)
T KOG4194|consen 422 DLGDNA 427 (873)
T ss_pred cCCCCc
Confidence 998854
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.3e-25 Score=235.30 Aligned_cols=356 Identities=19% Similarity=0.232 Sum_probs=236.8
Q ss_pred hcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEE
Q 038902 496 LKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLR 572 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~ 572 (997)
+...+.|++++|.+..+... .++++|+.+++..|.++.+|.. .....+|+.|+|.+|.|+++ .+.+..++.||.||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 56677788888777666543 3778888888888877776642 23345678888888877765 35677777888888
Q ss_pred cCCCCccCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCC
Q 038902 573 AENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGN 649 (997)
Q Consensus 573 L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 649 (997)
|+.|.++.+| ++..-.++++|+|++|.|+.+. ..|..+.+|-+|.|+.|. ++.+|...|.+|++|+.|++..+...
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccccee
Confidence 8888777776 6666677888888888777663 456677788888888777 67777777777888888877554210
Q ss_pred cccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc-----cc--cccccceEEeecCc
Q 038902 650 WELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD-----YW--EIASTRSMHLKNIS 722 (997)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~--~~~~L~~L~l~~~~ 722 (997)
......+..+++|+.|.+..|++..+..+.+..+.++++|++..|.. .| ++.+|+.|+++.+.
T Consensus 235 ----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 235 ----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred ----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 01123456777777777777777777777777777777777777765 34 67777777777776
Q ss_pred ---ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccce
Q 038902 723 ---TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKE 799 (997)
Q Consensus 723 ---~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 799 (997)
.....|-+ .++|+.|+| ..+.++.++...|..+..|+.|+|++|.+..+.. ..+..+.+|++|+++++..--.
T Consensus 305 I~rih~d~Wsf--tqkL~~LdL-s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 305 IQRIHIDSWSF--TQKLKELDL-SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-GAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred hheeecchhhh--cccceeEec-cccccccCChhHHHHHHHhhhhcccccchHHHHh-hHHHHhhhhhhhcCcCCeEEEE
Confidence 33444544 577888888 4555777777777777778888888887766633 3455677888888876643222
Q ss_pred eeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecC
Q 038902 800 VFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQK 878 (997)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 878 (997)
+ ++. .....++|+|++|.+.+ ++++++....+ ..+++|++|++.+. -+.++ .+..+..+ .|++|.+..
T Consensus 381 I---EDa--a~~f~gl~~LrkL~l~g-Nqlk~I~krAf--sgl~~LE~LdL~~N-aiaSI-q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 381 I---EDA--AVAFNGLPSLRKLRLTG-NQLKSIPKRAF--SGLEALEHLDLGDN-AIASI-QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred E---ecc--hhhhccchhhhheeecC-ceeeecchhhh--ccCcccceecCCCC-cceee-cccccccc-hhhhhhhcc
Confidence 2 111 12345578888888877 46777654332 36778888887773 34343 23333444 566665544
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.8e-21 Score=247.01 Aligned_cols=377 Identities=18% Similarity=0.243 Sum_probs=263.8
Q ss_pred hcCceEEEcccCCC-------cCCCCCC-C-CCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccc
Q 038902 496 LKEYKKISLMDSGI-------NKLPDEP-M-CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLV 566 (997)
Q Consensus 496 ~~~~~~L~l~~~~~-------~~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~ 566 (997)
+.+++.|.+..+.. ..+|... . .++|+.|++.++.+..+|..+ ...+|+.|+++++.+..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCC
Confidence 66777777754321 2344433 2 357999999999888887654 47899999999999999998899999
Q ss_pred cCCEEEcCCC-CccCCCcccccCcccEEEecCC-cccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEee
Q 038902 567 KLRSLRAENT-HLEKAPLKKEFKELVILILRGS-SIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIG 644 (997)
Q Consensus 567 ~L~~L~L~~~-~l~~lp~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 644 (997)
+|++|++++| .+..+|.++.+++|++|++++| .+..+|..+.++++|+.|++++|..+..+|.. .++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCC
Confidence 9999999987 5778888889999999999987 57788999999999999999999888999875 378999999998
Q ss_pred cCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCccc
Q 038902 645 NSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTP 724 (997)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~ 724 (997)
+|...... . ...++|+.|+++++.+..+|... .+++|..|.+.++... .+.+....
T Consensus 713 gc~~L~~~-----------p--~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~---------~l~~~~~~ 768 (1153)
T PLN03210 713 GCSRLKSF-----------P--DISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSE---------KLWERVQP 768 (1153)
T ss_pred CCCCcccc-----------c--cccCCcCeeecCCCccccccccc--cccccccccccccchh---------hccccccc
Confidence 87421111 0 12358899999988877776544 3577777776643320 00000011
Q ss_pred chHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeeec
Q 038902 725 LADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCL 803 (997)
Q Consensus 725 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 803 (997)
++......+++|+.|+|.+|..+..++ ..+.++++|+.|+|++|. +..+ |... ++++|+.|++++|..+..++.
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~L-P~~~--~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETL-PTGI--NLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCee-CCCC--CccccCEEECCCCCccccccc-
Confidence 111222235788999998887777776 357788899999999887 6655 4332 688899999999887766542
Q ss_pred cccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchh
Q 038902 804 EENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLE 883 (997)
Q Consensus 804 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 883 (997)
..++|+.|+++++ .++.++ .....+++|+.|++++|++|+.++ .....+++|+.+++++|.+++
T Consensus 844 ----------~~~nL~~L~Ls~n-~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 ----------ISTNISDLNLSRT-GIEEVP---WWIEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ----------cccccCEeECCCC-CCccCh---HHHhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcccc
Confidence 2467888888874 455543 234578899999999999998873 345678889999999998887
Q ss_pred hhhcCCCCCCcccccccCCCCCCcCCCccEEEEcccccccc
Q 038902 884 EIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKS 924 (997)
Q Consensus 884 ~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~ 924 (997)
.+.....+...... -.+ ....+|+...+.+.+|.+|..
T Consensus 908 ~~~l~~~~~~~~~~-~~n--~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 908 EASWNGSPSEVAMA-TDN--IHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cccCCCCchhhhhh-ccc--ccccCCchhccccccccCCCc
Confidence 65432211000000 000 012355566677778876654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1e-23 Score=225.86 Aligned_cols=365 Identities=22% Similarity=0.287 Sum_probs=209.5
Q ss_pred CCccEEEccCCCCC-CCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEec
Q 038902 519 PQLLTLFLQHNAFD-KIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILILR 596 (997)
Q Consensus 519 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~ 596 (997)
+-+|-.++++|.++ .-.|.....+..++.|.|..+.+..+|+.++.|.+|++|.+++|++..+- .++.++.|+.+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 34455566666544 33344445566666666666666666666666666666666666555554 55556666666666
Q ss_pred CCccc--ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCE
Q 038902 597 GSSIR--ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTV 674 (997)
Q Consensus 597 ~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 674 (997)
.|+++ .+|..+.++.-|..||+++|+ +.++|.+ +.+.. ++-.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AK----------------------------------n~iV 130 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAK----------------------------------NSIV 130 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhc----------------------------------CcEE
Confidence 66544 456666666666666666665 5555554 44444 4444
Q ss_pred EEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccc
Q 038902 675 LYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIE 754 (997)
Q Consensus 675 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 754 (997)
|++++|++..+|...+.++..|-.|+++.|.. ..+|..+.. +.+|+.|.|++.+ +......-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrL----------------e~LPPQ~RR-L~~LqtL~Ls~NP-L~hfQLrQ 192 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRL----------------EMLPPQIRR-LSMLQTLKLSNNP-LNHFQLRQ 192 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchh----------------hhcCHHHHH-HhhhhhhhcCCCh-hhHHHHhc
Confidence 55555555555544444333333333333222 233443332 4555555553322 22222222
Q ss_pred ccCCCCccEEEEeccC--CccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCccee
Q 038902 755 VQGLTALMTMHLRACS--LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTI 832 (997)
Q Consensus 755 ~~~l~~L~~L~L~~~~--l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 832 (997)
++.+.+|+.|++++.. +..+ |.+ +..+.+|..++++.+. +..+| .....+++|++|+|+++ .++++
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~-Pts-ld~l~NL~dvDlS~N~-Lp~vP--------ecly~l~~LrrLNLS~N-~iteL 260 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNI-PTS-LDDLHNLRDVDLSENN-LPIVP--------ECLYKLRNLRRLNLSGN-KITEL 260 (1255)
T ss_pred CccchhhhhhhcccccchhhcC-CCc-hhhhhhhhhccccccC-CCcch--------HHHhhhhhhheeccCcC-ceeee
Confidence 3345556666676666 3333 332 4456777777776543 33332 24456777788888773 45544
Q ss_pred cccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCcc
Q 038902 833 WKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQ 912 (997)
Q Consensus 833 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~ 912 (997)
....+...+|++|+++. +.|+.+ |..+..++.|+.|.+.+. +++. .+..+| .+.+..|+
T Consensus 261 ---~~~~~~W~~lEtLNlSr-NQLt~L--P~avcKL~kL~kLy~n~N-kL~F--------eGiPSG------IGKL~~Le 319 (1255)
T KOG0444|consen 261 ---NMTEGEWENLETLNLSR-NQLTVL--PDAVCKLTKLTKLYANNN-KLTF--------EGIPSG------IGKLIQLE 319 (1255)
T ss_pred ---eccHHHHhhhhhhcccc-chhccc--hHHHhhhHHHHHHHhccC-cccc--------cCCccc------hhhhhhhH
Confidence 22334556788888887 577777 677778888887777653 3332 011112 23366778
Q ss_pred EEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceeccccccccc
Q 038902 913 KLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELKT 983 (997)
Q Consensus 913 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~ 983 (997)
++..+++ +|+-+ |..+..|+.|+.|.+ +|+.|-++ |++++.+|-|+.|++.+.|+|--
T Consensus 320 vf~aanN-~LElV--PEglcRC~kL~kL~L-~~NrLiTL---------PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 320 VFHAANN-KLELV--PEGLCRCVKLQKLKL-DHNRLITL---------PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HHHhhcc-ccccC--chhhhhhHHHHHhcc-cccceeec---------hhhhhhcCCcceeeccCCcCccC
Confidence 8877774 35543 556678888888888 67777766 78888888888888888888753
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-23 Score=225.38 Aligned_cols=316 Identities=22% Similarity=0.277 Sum_probs=233.6
Q ss_pred CCChhh--hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCC--CCCChhHhhcCccccEEEecCcccCCCCccccc
Q 038902 490 GWPQED--LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAF--DKIPPGFFEHMREINFLDLSYTNISTLPGSIEC 564 (997)
Q Consensus 490 ~~~~~~--~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~ 564 (997)
.+|.+. ..++.||++..|.+.++.... .++.||++.+..|++ .++|+++| ++..|.+||||+|.+++.|..+..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~ 124 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEY 124 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhh
Confidence 445443 778999999999888887655 899999999999984 57888876 599999999999999999999999
Q ss_pred cccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEE
Q 038902 565 LVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642 (997)
Q Consensus 565 l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 642 (997)
-+++-.|+|++|+|..+| .+.++..|-+|||++|++..+|+.+.+|.+|++|++++|. +..+.-..+..+++|+.|+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhh
Confidence 999999999999999999 7889999999999999999999999999999999999997 3333222245567777888
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc------cccccceE
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW------EIASTRSM 716 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~L~~L 716 (997)
+++.-. .....+..+..+.||..++++.|++..+|. ....+++|.+|++++|.++- ...++++|
T Consensus 204 ms~TqR---------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 204 MSNTQR---------TLDNIPTSLDDLHNLRDVDLSENNLPIVPE-CLYKLRNLRRLNLSGNKITELNMTEGEWENLETL 273 (1255)
T ss_pred cccccc---------hhhcCCCchhhhhhhhhccccccCCCcchH-HHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence 776421 223345567888899999999998877664 44568999999999988721 44567777
Q ss_pred EeecCc-ccchHHHHHhhccccceecCCCCC-CcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecc
Q 038902 717 HLKNIS-TPLADWVKLLLEKTEDLTLTRSRD-LEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYC 794 (997)
Q Consensus 717 ~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~-l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c 794 (997)
+++.+. +.+|+.+.. +++|++|.+++..- +..++ ++++++.+|+.++..+|.+.-+ |.+ +..|+.|+.|.++++
T Consensus 274 NlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiP-SGIGKL~~Levf~aanN~LElV-PEg-lcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIP-SGIGKLIQLEVFHAANNKLELV-PEG-LCRCVKLQKLKLDHN 349 (1255)
T ss_pred ccccchhccchHHHhh-hHHHHHHHhccCcccccCCc-cchhhhhhhHHHHhhccccccC-chh-hhhhHHHHHhccccc
Confidence 777777 777777765 67777777733221 44444 4566777777777777765433 433 445666666666544
Q ss_pred cccceeeeccccchhhhhccccccceeecCCccCcc
Q 038902 795 YSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLL 830 (997)
Q Consensus 795 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 830 (997)
..+ .+| ....-+|.|+.|+++.+++|.
T Consensus 350 rLi-TLP--------eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 350 RLI-TLP--------EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cee-ech--------hhhhhcCCcceeeccCCcCcc
Confidence 322 222 234455666666666655554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-22 Score=226.82 Aligned_cols=425 Identities=20% Similarity=0.229 Sum_probs=212.8
Q ss_pred ceEEEcccCCCcCCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCC
Q 038902 499 YKKISLMDSGINKLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENT 576 (997)
Q Consensus 499 ~~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 576 (997)
+.+|++..|..-..|-.. .+-+|++|++++|.+...|.. +..+.+|+.|.++.|.|..+|.++.++.+|++|+|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 444444444443333111 333355555555555544443 23455555555555555555555555555555555555
Q ss_pred CccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCc----c
Q 038902 577 HLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNW----E 651 (997)
Q Consensus 577 ~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~ 651 (997)
.+..+| ++..+.+|++|++++|.+..+|..+..+..+..+..++|..+..++.. . .+.+++..+.... +
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhhhhhhhhcccchhcc
Confidence 555555 555555555555555555555555555555555555555322222221 0 2222221110000 0
Q ss_pred cccCC---CCC--CCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCcc-----ccccccceEEeecC
Q 038902 652 LEETP---NPK--SAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY-----WEIASTRSMHLKNI 721 (997)
Q Consensus 652 ~~~~~---~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~L~~L~l~~~ 721 (997)
..... +.. .-....+..+++|+.|....|.+..+.. .-++|+.|..+.|... ....+++.++++.+
T Consensus 176 i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 176 IYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN 251 (1081)
T ss_pred hhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccccccccceeeecchh
Confidence 00000 000 0001233444444444444443322211 1255666666655541 13456778888777
Q ss_pred c-ccchHHHHHhhccccceecCCCCCCcccccccc----------------------cCCCCccEEEEeccCCccccchh
Q 038902 722 S-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEV----------------------QGLTALMTMHLRACSLQRIFRSS 778 (997)
Q Consensus 722 ~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~----------------------~~l~~L~~L~L~~~~l~~~~~~~ 778 (997)
. ..+|+|+.. +.+|+.+.. +.+.+..++...+ ..+.+|++|+|..|.+..+++ .
T Consensus 252 ~l~~lp~wi~~-~~nle~l~~-n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~-~ 328 (1081)
T KOG0618|consen 252 NLSNLPEWIGA-CANLEALNA-NHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD-N 328 (1081)
T ss_pred hhhcchHHHHh-cccceEecc-cchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch-H
Confidence 7 777888876 677777777 3333444332222 224556666666666555532 2
Q ss_pred hHHHhcC-CcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCC
Q 038902 779 FYARARN-AEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLK 857 (997)
Q Consensus 779 ~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~ 857 (997)
++..... |+.|+.+.+ .+...+. .....++.|+.|.+.++. |++-+ .....+++.|+.|++++ +.|.
T Consensus 329 ~l~v~~~~l~~ln~s~n-~l~~lp~-------~~e~~~~~Lq~LylanN~-Ltd~c--~p~l~~~~hLKVLhLsy-NrL~ 396 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSN-KLSTLPS-------YEENNHAALQELYLANNH-LTDSC--FPVLVNFKHLKVLHLSY-NRLN 396 (1081)
T ss_pred HHhhhhHHHHHHhhhhc-ccccccc-------ccchhhHHHHHHHHhcCc-ccccc--hhhhccccceeeeeecc-cccc
Confidence 3332222 444444322 2222221 133456778888887743 44322 22345788999999998 4666
Q ss_pred ccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhccc
Q 038902 858 NIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKEL 937 (997)
Q Consensus 858 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 937 (997)
.. +.....++..|++|++++ ++|+.++..- ..++.|++|...++. |.. +| -+..++.|
T Consensus 397 ~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tv----------------a~~~~L~tL~ahsN~-l~~-fP--e~~~l~qL 454 (1081)
T KOG0618|consen 397 SF-PASKLRKLEELEELNLSG-NKLTTLPDTV----------------ANLGRLHTLRAHSNQ-LLS-FP--ELAQLPQL 454 (1081)
T ss_pred cC-CHHHHhchHHhHHHhccc-chhhhhhHHH----------------HhhhhhHHHhhcCCc-eee-ch--hhhhcCcc
Confidence 54 567778889999999998 5666665322 235566665554432 333 23 23456666
Q ss_pred ceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 938 KELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 938 ~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
+.+++ +|++|+.+... +... -|.|++|+++|.+.
T Consensus 455 ~~lDl-S~N~L~~~~l~-------~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDL-SCNNLSEVTLP-------EALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred eEEec-ccchhhhhhhh-------hhCC-CcccceeeccCCcc
Confidence 66666 46666654211 1111 15666666666654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1e-23 Score=215.48 Aligned_cols=255 Identities=23% Similarity=0.318 Sum_probs=153.2
Q ss_pred eEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l 578 (997)
..+.++.|.+..+.... ++..+.+|++.+|.+...|+. ++.+..++.|+.++|.++.+|..++.+.+|+.|+.+.|.+
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 34445555555444333 556666666666666555554 3455566666666666666666666666666666666666
Q ss_pred cCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCC
Q 038902 579 EKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657 (997)
Q Consensus 579 ~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 657 (997)
..+| +++.+..|+.|+..+|++..+|.++.++.+|..|++.+|. ++..|+..+ +++.|++|+...+
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N----------- 193 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSN----------- 193 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchh-----------
Confidence 6655 6666666666666666666666666666666666666665 455555533 3666666654332
Q ss_pred CCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc-------cccccceEEeecCc-ccchHHH
Q 038902 658 PKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW-------EIASTRSMHLKNIS-TPLADWV 729 (997)
Q Consensus 658 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~L~~L~l~~~~-~~~~~~~ 729 (997)
.-+..+.+++.+.+|+.|++..|.+..+| .+.+|..|++|++..|.+.. .++++..|++..+. .++|+.+
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH
Confidence 22334455666666666666666665555 23345566666665555421 45566666666666 7778777
Q ss_pred HHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccc
Q 038902 730 KLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 730 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~ 774 (997)
.. +.+|++|+++ .+.++.++ ..++++ +|++|-+.+|++..+
T Consensus 272 cl-LrsL~rLDlS-NN~is~Lp-~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 272 CL-LRSLERLDLS-NNDISSLP-YSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred HH-hhhhhhhccc-CCccccCC-cccccc-eeeehhhcCCchHHH
Confidence 64 6788888883 34466665 356677 788888888886543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.1e-22 Score=208.11 Aligned_cols=349 Identities=18% Similarity=0.223 Sum_probs=192.4
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
.....++.++.|.+.++|... ...+++.|++++|.+..+++++ +.+..|..|+..+|++..+|..+.++..|..+++.
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhcc
Confidence 445555566666656665543 5556666666666655555543 44556666666666666666666666666666666
Q ss_pred CCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 575 NTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 575 ~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
+|.++.+| ..-++..|++||...|-++.+|+.++.+.+|..|++..|. +..+|. |+.+..|++|+++.+.
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~------ 239 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQ------ 239 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccH------
Confidence 66666655 4444666666666666666666666666666666666665 556664 5666666666665432
Q ss_pred cCCCCCCCChHhh-hCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc------cccccceEEeecCc-ccc
Q 038902 654 ETPNPKSAAFKEV-ASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW------EIASTRSMHLKNIS-TPL 725 (997)
Q Consensus 654 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~L~~L~l~~~~-~~~ 725 (997)
....+++. +.+++|..||+..|++..+|..... +.+|++|++++|.+.. ++ .|+.|.+.+++ .++
T Consensus 240 -----i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 240 -----IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred -----HHhhHHHHhcccccceeeeccccccccCchHHHH-hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence 22233343 4889999999999999999877654 6889999999998843 23 56777788887 444
Q ss_pred hHHHHH-----hhccccceec--CCCCC----------CcccccccccCCCCccEEEEeccCCccccchhhHHHh--cCC
Q 038902 726 ADWVKL-----LLEKTEDLTL--TRSRD----------LEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARA--RNA 786 (997)
Q Consensus 726 ~~~~~~-----~l~~L~~L~L--~~~~~----------l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l--~~L 786 (997)
...+.. .+..|.+ .+ .+... .+.........+.+.+.|++++-.++.+ |...|..- .-.
T Consensus 313 Rr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~V 390 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcce
Confidence 333321 1222222 01 11111 0111111222356688888888888877 44444422 124
Q ss_pred cEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHH
Q 038902 787 EELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLAL 866 (997)
Q Consensus 787 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~ 866 (997)
...+++++. +.++| .....+..+.+..+...+. .++. +.....+++|..|++++ .-|.++ |...+
T Consensus 391 t~VnfskNq-L~elP--------k~L~~lkelvT~l~lsnn~-isfv--~~~l~~l~kLt~L~L~N-N~Ln~L--P~e~~ 455 (565)
T KOG0472|consen 391 TSVNFSKNQ-LCELP--------KRLVELKELVTDLVLSNNK-ISFV--PLELSQLQKLTFLDLSN-NLLNDL--PEEMG 455 (565)
T ss_pred EEEecccch-Hhhhh--------hhhHHHHHHHHHHHhhcCc-cccc--hHHHHhhhcceeeeccc-chhhhc--chhhh
Confidence 455555543 22222 1222222222222222111 1111 12233556666666665 234444 33444
Q ss_pred hhcCCceEeecC
Q 038902 867 KLGKLEQLSFQK 878 (997)
Q Consensus 867 ~l~~L~~L~l~~ 878 (997)
.+..|+.|+++.
T Consensus 456 ~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 456 SLVRLQTLNLSF 467 (565)
T ss_pred hhhhhheecccc
Confidence 555566666655
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=3.3e-21 Score=217.32 Aligned_cols=404 Identities=21% Similarity=0.231 Sum_probs=227.5
Q ss_pred CceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 576 (997)
++.+|++++|.+..+|... .+.+|+.|.++.|.+...+ ..+.++++|++|.|.+|....+|.++..+.+|++|+++.|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 4899999999999999866 7899999999999988877 4567899999999999999999999999999999999999
Q ss_pred CccCCC-cccccCcccEEEecCC-ccc-------------------ccCccccCCCCCcEEeccCCccCCCCChHHhhcC
Q 038902 577 HLEKAP-LKKEFKELVILILRGS-SIR-------------------ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKL 635 (997)
Q Consensus 577 ~l~~lp-~~~~l~~L~~L~L~~~-~l~-------------------~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 635 (997)
.+...| .+..+..++.+..++| ++. .++.++..+.+ .|++++|... .+ . +.++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~-d--ls~~ 198 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL-D--LSNL 198 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh-h--hhhc
Confidence 999888 6666666666666666 222 22333333333 4777777633 11 1 3444
Q ss_pred CCCcEEEeecCCCC-cc-----cccCCCCCCCChHhhh---CCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 636 CQLEELYIGNSFGN-WE-----LEETPNPKSAAFKEVA---SLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 636 ~~L~~L~l~~~~~~-~~-----~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.+|+.+....+... .+ +..+. .....+..+. .-.+|+.++++.+.+..+| .....+.+|+.+.+..|..
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~-a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALY-ADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRL 276 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheee-eccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhH
Confidence 44444443221000 00 00000 0000000111 1136777777777777777 5556677777777776654
Q ss_pred c------ccccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCC-ccEEEEeccCCccccchh
Q 038902 707 Y------WEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTA-LMTMHLRACSLQRIFRSS 778 (997)
Q Consensus 707 ~------~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~-L~~L~L~~~~l~~~~~~~ 778 (997)
. +...+|+.|....+. ..+|..... +.+|++|+| .-++++.++...|..++. |+.|+.+.+.+... |..
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~-~~sL~tLdL-~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p~~ 353 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEG-LKSLRTLDL-QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-PSY 353 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccc-cceeeeeee-hhccccccchHHHhhhhHHHHHHhhhhcccccc-ccc
Confidence 1 133344444444444 333332221 455666666 333445444433333332 55555555554443 211
Q ss_pred hHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCc
Q 038902 779 FYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKN 858 (997)
Q Consensus 779 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 858 (997)
--..++.|+.|++.++..-...+ ..+.++++|+.|+|+++ .|.+++... ...++.|++|++++ ++|+.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~--------p~l~~~~hLKVLhLsyN-rL~~fpas~--~~kle~LeeL~LSG-NkL~~ 421 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCF--------PVLVNFKHLKVLHLSYN-RLNSFPASK--LRKLEELEELNLSG-NKLTT 421 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccch--------hhhccccceeeeeeccc-ccccCCHHH--HhchHHhHHHhccc-chhhh
Confidence 12245556666665554333322 13455666666666663 333332211 22555666666666 46666
Q ss_pred cCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccc
Q 038902 859 IFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELK 938 (997)
Q Consensus 859 l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~ 938 (997)
+ +....+++.|++|...+ +.+..+|. ...++.|+.++++. ++|+.+..+.... -|+||
T Consensus 422 L--p~tva~~~~L~tL~ahs-N~l~~fPe-----------------~~~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~Lk 479 (1081)
T KOG0618|consen 422 L--PDTVANLGRLHTLRAHS-NQLLSFPE-----------------LAQLPQLKVLDLSC-NNLSEVTLPEALP-SPNLK 479 (1081)
T ss_pred h--hHHHHhhhhhHHHhhcC-Cceeechh-----------------hhhcCcceEEeccc-chhhhhhhhhhCC-Ccccc
Confidence 6 35555566666655544 23333221 22356666666663 3455443332211 15666
Q ss_pred eEEeecccc
Q 038902 939 ELNIVGCNE 947 (997)
Q Consensus 939 ~L~i~~C~~ 947 (997)
+|+++|...
T Consensus 480 yLdlSGN~~ 488 (1081)
T KOG0618|consen 480 YLDLSGNTR 488 (1081)
T ss_pred eeeccCCcc
Confidence 666666553
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.7e-17 Score=146.01 Aligned_cols=166 Identities=30% Similarity=0.418 Sum_probs=147.8
Q ss_pred cCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccC
Q 038902 510 NKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFK 588 (997)
Q Consensus 510 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~ 588 (997)
.+++...++++++.|.+++|.++.+++.+ ..+.+|++|++++|.|+++|.+++.++.|+.|++.-|++..+| .|+.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 45666678899999999999999888874 7899999999999999999999999999999999999999999 999999
Q ss_pred cccEEEecCCccc--ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhh
Q 038902 589 ELVILILRGSSIR--ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEV 666 (997)
Q Consensus 589 ~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 666 (997)
.|++||+.+|++. .+|..|..+..|+-|.++.|. ...+|+. ++++++||.|.+..+ ..-..+.++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdn-----------dll~lpkei 169 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDN-----------DLLSLPKEI 169 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccC-----------chhhCcHHH
Confidence 9999999999876 689999999999999999998 5778888 899999999998765 233566889
Q ss_pred hCCCCCCEEEEEecccccccccc
Q 038902 667 ASLSRLTVLYIHINSTEVLSKQF 689 (997)
Q Consensus 667 ~~l~~L~~L~l~~~~~~~~~~~~ 689 (997)
+.++.|+.|.+.+|.+..+|+..
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 99999999999999988887654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.3e-13 Score=162.32 Aligned_cols=241 Identities=20% Similarity=0.171 Sum_probs=136.8
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCC
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLR 569 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~ 569 (997)
.+|.....+++.|.+.+|.+..+|. .+++|++|++++|.+..++. ..++|+.|++++|.++.+|... .+|+
T Consensus 215 sLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~ 285 (788)
T PRK15387 215 TLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALP---SGLC 285 (788)
T ss_pred cCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhch---hhcC
Confidence 4454445567777777777777765 35777778887777776653 2356777777777777666532 4567
Q ss_pred EEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCC
Q 038902 570 SLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGN 649 (997)
Q Consensus 570 ~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 649 (997)
.|++++|.++.+|.. +++|+.|++++|++..+|.. ..+|+.|++++|. +..+|. + ..+|+.|++++|...
T Consensus 286 ~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 286 KLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--PSGLQELSVSDNQLA 355 (788)
T ss_pred EEECcCCcccccccc--ccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--ccccceEecCCCccC
Confidence 777777777777632 35677777777777776642 2356667777766 455654 1 246777777665211
Q ss_pred cccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc---cccccceEEeecCc-ccc
Q 038902 650 WELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW---EIASTRSMHLKNIS-TPL 725 (997)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~L~~L~l~~~~-~~~ 725 (997)
.++ . ..++|+.|++++|.+..++.. ..+|+.|++++|.+.. ..++|+.|+++++. ..+
T Consensus 356 ----~LP-------~---lp~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 356 ----SLP-------T---LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 417 (788)
T ss_pred ----CCC-------C---CCcccceehhhccccccCccc----ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCC
Confidence 000 0 113566667777666655432 2456677776665421 22344555555554 333
Q ss_pred hHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCcc
Q 038902 726 ADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQR 773 (997)
Q Consensus 726 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~ 773 (997)
|.. ..+|+.|++.+ +.++.++ ..+.++++|+.|+|++|++++
T Consensus 418 P~l----~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 418 PML----PSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred Ccc----hhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCCCCCc
Confidence 321 12344444422 2244443 234445555555555555443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.2e-13 Score=162.57 Aligned_cols=172 Identities=23% Similarity=0.242 Sum_probs=131.4
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~ 577 (997)
.-..|+++++.+..+|... .++|+.|++.+|.++.+|. .+++|++|++++|.++.+|.. ..+|++|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 3457888888888888754 3589999999999988774 368999999999999988853 4689999999999
Q ss_pred ccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCC
Q 038902 578 LEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657 (997)
Q Consensus 578 l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 657 (997)
++.+|.+ +.+|+.|++++|++..+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.. ..
T Consensus 274 L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L----~~--- 336 (788)
T PRK15387 274 LTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQL----TS--- 336 (788)
T ss_pred hhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcc----cc---
Confidence 9888742 36788999999999998863 5789999999997 6667652 24677788766521 11
Q ss_pred CCCCChHhhhCC-CCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 658 PKSAAFKEVASL-SRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 658 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
+..+ ++|+.|++++|.+..+|.. .++|+.|++++|.+
T Consensus 337 --------LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L 374 (788)
T PRK15387 337 --------LPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRL 374 (788)
T ss_pred --------ccccccccceEecCCCccCCCCCC----Ccccceehhhcccc
Confidence 1112 4799999999988877653 26778887777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1e-13 Score=164.41 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=118.8
Q ss_pred ceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCc
Q 038902 499 YKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 499 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l 578 (997)
...|.+.++.+..+|... .++|+.|++++|.+..++...+ .+|++|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 345555555555555432 2456666666666666555432 356666666666666665443 3566666666666
Q ss_pred cCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCC
Q 038902 579 EKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657 (997)
Q Consensus 579 ~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 657 (997)
..+| .+. .+|+.|++++|++..+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|... .
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt----~--- 318 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLT----A--- 318 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccc----c---
Confidence 6665 332 356666666666666655443 356666666664 4455543 1 134555555543110 0
Q ss_pred CCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc----cccccceEEeecCc-ccchHHHHHh
Q 038902 658 PKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW----EIASTRSMHLKNIS-TPLADWVKLL 732 (997)
Q Consensus 658 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~L~~L~l~~~~-~~~~~~~~~~ 732 (997)
.+.. -.++|+.|++++|.+..++..+. ++|+.|++++|.+.. -.++|+.|++++|. ..+|..+.
T Consensus 319 ----LP~~--l~~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 319 ----LPET--LPPGLKTLEAGENALTSLPASLP---PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred ----CCcc--ccccceeccccCCccccCChhhc---CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH--
Confidence 0000 11356666666665555443221 455555555554310 11234444444444 34444432
Q ss_pred hccccceecCCCCCCccccc---ccccCCCCccEEEEeccCCc
Q 038902 733 LEKTEDLTLTRSRDLEDIGA---IEVQGLTALMTMHLRACSLQ 772 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~---~~~~~l~~L~~L~L~~~~l~ 772 (997)
.+|+.|++++ +++..++. ..+..++++..|++.+|++.
T Consensus 388 -~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2455555533 22333321 11223455566666666543
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-14 Score=172.42 Aligned_cols=162 Identities=26% Similarity=0.324 Sum_probs=126.8
Q ss_pred CCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcc--cCCCCc-cccccccCCEEEcCCC-CccCCC-
Q 038902 508 GINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTN--ISTLPG-SIECLVKLRSLRAENT-HLEKAP- 582 (997)
Q Consensus 508 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--i~~lp~-~l~~l~~L~~L~L~~~-~l~~lp- 582 (997)
.....|........|...+.+|.+..++.. ..++.|++|-+.+|. +..++. .|..++.|++|||++| .+..+|
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 334455555778889999988887666654 246689999999985 566654 4778999999999988 788999
Q ss_pred cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCC
Q 038902 583 LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAA 662 (997)
Q Consensus 583 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 662 (997)
.++.|.+|++|+++++.+..+|.++.+|++|.+|++..+..+..+|. +...+++|++|.+.... ...+...
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~--------~~~~~~~ 660 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA--------LSNDKLL 660 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc--------cccchhh
Confidence 99999999999999999999999999999999999999887766654 36779999999996542 1134455
Q ss_pred hHhhhCCCCCCEEEEEec
Q 038902 663 FKEVASLSRLTVLYIHIN 680 (997)
Q Consensus 663 ~~~l~~l~~L~~L~l~~~ 680 (997)
+.++..+.+|+.+.+...
T Consensus 661 l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 661 LKELENLEHLENLSITIS 678 (889)
T ss_pred HHhhhcccchhhheeecc
Confidence 566777777777666543
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=9e-15 Score=150.54 Aligned_cols=134 Identities=23% Similarity=0.279 Sum_probs=113.4
Q ss_pred cCCChhhhcCceEEEcccCCCcCCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecC-cccCCCCc-cccc
Q 038902 489 KGWPQEDLKEYKKISLMDSGINKLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSY-TNISTLPG-SIEC 564 (997)
Q Consensus 489 ~~~~~~~~~~~~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~lp~-~l~~ 564 (997)
.++|.+.+.....|.+..|.+..+|... .+++||.|+|++|.++.+.+++|.+++.|..|-+.+ |.|+.+|. .|+.
T Consensus 59 ~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 59 TEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 3778777888999999999999998865 889999999999999999999999998887766655 88998885 5688
Q ss_pred cccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCc
Q 038902 565 LVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNI 622 (997)
Q Consensus 565 l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 622 (997)
|..|+-|.+.-|.+..++ .+..+++|..|.+..|.+..++. .+..+..++++.+..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 999999999888888876 78889999999999998888876 67788888888877765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=4.6e-13 Score=158.97 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=117.0
Q ss_pred CCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEecC
Q 038902 519 PQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILILRG 597 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~~ 597 (997)
.+...|+++++.++.+|... .++|+.|++++|.++.+|..+. .+|++|++++|.++.+| .+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 45678899988888877643 3579999999999999987664 58999999999999888 443 4799999999
Q ss_pred CcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEE
Q 038902 598 SSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYI 677 (997)
Q Consensus 598 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 677 (997)
|++..+|..+. .+|+.|++++|. +..+|.. + .++|+.|++++|.. .. .+..+ .++|+.|++
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~L----t~-------LP~~l--p~sL~~L~L 311 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSI----RT-------LPAHL--PSGITHLNV 311 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCcc----cc-------Ccccc--hhhHHHHHh
Confidence 99998887664 589999999886 6678765 3 35899999977621 11 11111 136788888
Q ss_pred EeccccccccccCCCCCCccEEEEEecCc
Q 038902 678 HINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
++|.+..++.... ++|+.|.+.+|..
T Consensus 312 s~N~Lt~LP~~l~---~sL~~L~Ls~N~L 337 (754)
T PRK15370 312 QSNSLTALPETLP---PGLKTLEAGENAL 337 (754)
T ss_pred cCCccccCCcccc---ccceeccccCCcc
Confidence 8888776654332 5777777776654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2.4e-14 Score=130.35 Aligned_cols=148 Identities=22% Similarity=0.372 Sum_probs=125.2
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
+..+++|.++.|.+..+|... .+.+|++|++++|++..+|.+ ++.++.||.|+++-|.+..+|..++.++-|+.||+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 567788888888888888765 888899999999988888876 478889999999888888888889999999999998
Q ss_pred CCCcc--CCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 575 NTHLE--KAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 575 ~~~l~--~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
.|++. .+| .|..+..|+-|.++.|.++-+|..++++++|+.|.+..|. +-++|.. ++.++.|++|++.++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccc
Confidence 88765 467 7888888888899999888889889999999999988887 6678888 788999999988765
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=7.3e-14 Score=143.93 Aligned_cols=142 Identities=26% Similarity=0.412 Sum_probs=118.6
Q ss_pred EEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCC-CCcc
Q 038902 502 ISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAEN-THLE 579 (997)
Q Consensus 502 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~-~~l~ 579 (997)
+...+.++..+|... .+....+.|..|.++.+|+.+|+.+++||.|||++|.|+.+ |..|..+..|-.|-+.+ |+|+
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334455666676532 34667889999999999999999999999999999999977 78899999988887777 7999
Q ss_pred CCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeec
Q 038902 580 KAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGN 645 (997)
Q Consensus 580 ~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 645 (997)
++| .|++|..|+.|.+.-|++.-++ ..+..+++|..|.+..|. +..++.+.+..+.+++++++..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhc
Confidence 999 8999999999999998888654 567899999999999887 6778876688888888888744
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=5.9e-10 Score=126.72 Aligned_cols=288 Identities=16% Similarity=0.109 Sum_probs=174.5
Q ss_pred cccccHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCceEEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLK----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.++||++++++|...+. ++....+.|+|++|+|||++++.++++..... .+..+++++....+...++..|+.++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 78999999999988873 23456788999999999999999999887643 34448888877778889999999998
Q ss_pred CC-CCc--hhhHHHHHHHHHHHHHhcCCcEEEEEccccccc------cccccccccCCCCCceE--EEEeeCChhhhh--
Q 038902 216 KF-KIE--EEDELQRRATLAKRLRERTKKVLIILDDVREKI------NLAVSGIPYGEERKRCK--VIVTSRRLDVCS-- 282 (997)
Q Consensus 216 ~~-~~~--~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs~--iivTtr~~~v~~-- 282 (997)
.. ..+ ..+..+....+.+.+...+++.+||+|+++... .+..+...+ ....+++ +|.+++...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 111 FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhc
Confidence 65 221 223455667777777765577999999998753 122221111 1122333 666666544322
Q ss_pred ------cCCCeeEEcCCCCHHHHHHHHHHHcCCC--CChhhHHHHHHHHHHh----CCchhHHHHHHHHHc-----CCCc
Q 038902 283 ------KMSDVTVQIEELGEEDRLKLFKQIARLP--DSEAFEGAAKVIVKAC----GSLPNAIAIVAGALR-----GKLA 345 (997)
Q Consensus 283 ------~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~i~~~~----~glPlai~~~~~~l~-----~~~~ 345 (997)
......+.+++++.++..+++..++... +..-.++....|++.+ |..+.|+..+-.+.. +...
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 2223578999999999999998776311 1111223334444444 557788777654321 1111
Q ss_pred ccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccC-C-CCCccchhhHHHHh--hc
Q 038902 346 NESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLF-P-AYRSVPIEDFVMHG--LV 421 (997)
Q Consensus 346 ~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~f-p-~~~~i~~~~li~~w--~a 421 (997)
. +.+..+.++.. ... ....-.+..||.++|..+..++-. . +...+...++.... ++
T Consensus 270 I-----~~~~v~~a~~~-~~~--------------~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 270 V-----TEEDVRKAYEK-SEI--------------VHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred c-----CHHHHHHHHHH-HHH--------------HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 0 13555555555 211 112335678888877766654422 2 11345555555331 11
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038902 422 DRLFRDVDSMGGVLNKMQSIVEDLRNRKILSY 453 (997)
Q Consensus 422 ~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 453 (997)
+.+-.... ....+..+++.|...++++.
T Consensus 330 ~~~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 330 EELGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHcCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 11111111 12334568999999999964
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=2.8e-10 Score=144.58 Aligned_cols=289 Identities=13% Similarity=0.158 Sum_probs=176.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHHHhCCCC
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAELLKFKI 219 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 219 (997)
.++-|..-.+.+-+ ....+++.|+|++|.||||++..+.+.. . ..+|+++.. ..+...+...++..++...
T Consensus 15 ~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 15 NTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred ccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 56666655554432 2357899999999999999999988532 2 349999964 4566667677777764211
Q ss_pred ch--------------hhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--cc-ccccccCCCCCceEEEEeeCChhhhh
Q 038902 220 EE--------------EDELQRRATLAKRLRERTKKVLIILDDVREKIN--LA-VSGIPYGEERKRCKVIVTSRRLDVCS 282 (997)
Q Consensus 220 ~~--------------~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~-~l~~~~~~~~~gs~iivTtr~~~v~~ 282 (997)
.. .+.......+...+...+.+++||+||+...++ .. .+..-+.....+.++|||||...-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 10 111122333334443335899999999976532 12 22222233345678889999842111
Q ss_pred --cC--CCeeEEcC----CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhh
Q 038902 283 --KM--SDVTVQIE----ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVN 354 (997)
Q Consensus 283 --~~--~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~ 354 (997)
.. ......+. +|+.+|+.++|....+..-+ .+....|.+.|+|.|+++..++..+..... .
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~--------~ 235 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE---AAESSRLCDDVEGWATALQLIALSARQNNS--------S 235 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCC--------c
Confidence 11 11344555 99999999999887764322 235678999999999999999887754332 0
Q ss_pred hhHHHHHHHHHhccccccccCcccccceee-eecccchhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHH
Q 038902 355 IWNDAVEEVIRESRDIKIEEIPKEEFLGIT-IGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGG 433 (997)
Q Consensus 355 ~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 433 (997)
....... +... ....+...+. -.++.||++.+..+...|+++. |+.+.+-.. .. .++
T Consensus 236 -~~~~~~~-~~~~-------~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l------~~----~~~ 293 (903)
T PRK04841 236 -LHDSARR-LAGI-------NASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRV------TG----EEN 293 (903)
T ss_pred -hhhhhHh-hcCC-------CchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHH------cC----CCc
Confidence 0000111 1000 0112222222 2367999999999999999973 443322211 11 111
Q ss_pred HHHHHHHHHHHHHhccccc-ccc-CCCeEEecchhHHHHHHhh
Q 038902 434 VLNKMQSIVEDLRNRKILS-YRE-GEGTYRIHDNTRIVVKYFA 474 (997)
Q Consensus 434 ~~~~~~~~l~~L~~~~ll~-~~~-~~~~~~mHdli~~~~~~~~ 474 (997)
....+++|.+.+++. +.+ ....|+.|++++++.+...
T Consensus 294 ----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 ----GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 124689999999964 333 3346899999999988664
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=1.1e-10 Score=122.59 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=107.5
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH---------HH
Q 038902 142 LTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK---------IA 212 (997)
Q Consensus 142 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~---------i~ 212 (997)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+.. .+..+|+...+......+... +.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GYKVVYIDFLEESNESSLRSFIEETSLADELS 79 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CCcEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 78999999999999988778999999999999999999999987432 222255554444322221111 11
Q ss_pred HHhCCCC-----------chhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-ccc-------cccccc---CCCCCceE
Q 038902 213 ELLKFKI-----------EEEDELQRRATLAKRLRERTKKVLIILDDVREKI-NLA-------VSGIPY---GEERKRCK 270 (997)
Q Consensus 213 ~~l~~~~-----------~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-~~~-------~l~~~~---~~~~~gs~ 270 (997)
..++... ...........+.+.+...+++++||+||+.... ... .+...+ ....+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 159 (234)
T PF01637_consen 80 EALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSI 159 (234)
T ss_dssp HHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEE
T ss_pred HHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceE
Confidence 1121100 1122234455566666664567999999998766 111 111111 22333444
Q ss_pred EEEeeCChhhhhc--------CCC-eeEEcCCCCHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhCCchhHHHH
Q 038902 271 VIVTSRRLDVCSK--------MSD-VTVQIEELGEEDRLKLFKQIARLPDS-EAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 271 iivTtr~~~v~~~--------~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~i~~~~~glPlai~~ 335 (997)
| ++.-+..+... .+. ..+.+++++.+++++++...+..... +..++...+|.+.+||+|..|..
T Consensus 160 v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 160 V-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred E-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 44444433322 222 55999999999999999987643310 12355669999999999998864
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=3.5e-09 Score=119.18 Aligned_cols=289 Identities=14% Similarity=0.125 Sum_probs=171.6
Q ss_pred cccccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-C----CceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-P----HDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~----f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++||+.++++|..++.. +....+.|+|++|+|||++++.+++...... . |..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 789999999999998853 4456899999999999999999998865321 1 444888888877888999999
Q ss_pred HHHh---CCCCc--hhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-c----cccccccc-CCCC--CceEEEEeeCCh
Q 038902 212 AELL---KFKIE--EEDELQRRATLAKRLRERTKKVLIILDDVREKI-N----LAVSGIPY-GEER--KRCKVIVTSRRL 278 (997)
Q Consensus 212 ~~~l---~~~~~--~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iivTtr~~ 278 (997)
+.++ +...+ ..+..+....+.+.+...+++++||||+++... . +..+.... .... ....+|++|+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 9998 43322 123344555666666544578999999998762 1 11211110 1111 233456666544
Q ss_pred hhhh--------cCCCeeEEcCCCCHHHHHHHHHHHcC---CC--CChhhHHHHHHHHHHhCCch-hHHHHHHHHH----
Q 038902 279 DVCS--------KMSDVTVQIEELGEEDRLKLFKQIAR---LP--DSEAFEGAAKVIVKACGSLP-NAIAIVAGAL---- 340 (997)
Q Consensus 279 ~v~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~---~~--~~~~~~~~~~~i~~~~~glP-lai~~~~~~l---- 340 (997)
.... .+....+.+++++.++..+++..++. .. -+++..+....++....|.| .|+..+-.+.
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3222 22225689999999999999988763 11 12233334555666777887 4444332222
Q ss_pred c-CCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccC--CCCCccchhhHHH
Q 038902 341 R-GKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLF--PAYRSVPIEDFVM 417 (997)
Q Consensus 341 ~-~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~li~ 417 (997)
. +... =+.+..+.+.+. +... ...-+...||.++|..+..++-. .++..+...++..
T Consensus 256 ~~~~~~-----it~~~v~~a~~~-~~~~--------------~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~ 315 (365)
T TIGR02928 256 REGAER-----VTEDHVEKAQEK-IEKD--------------RLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYE 315 (365)
T ss_pred HcCCCC-----CCHHHHHHHHHH-HHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 1 1111 013444444444 2111 11234567788777665544321 1344567776666
Q ss_pred Hhhc--cccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038902 418 HGLV--DRLFRDVDSMGGVLNKMQSIVEDLRNRKILSY 453 (997)
Q Consensus 418 ~w~a--~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 453 (997)
.+-. +.+-....+ ...+.+++..|...|+++.
T Consensus 316 ~y~~~~~~~~~~~~~----~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 316 VYKEVCEDIGVDPLT----QRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHHHHhcCCCCCc----HHHHHHHHHHHHhcCCeEE
Confidence 3321 111111112 2344568999999999964
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=1.9e-09 Score=115.64 Aligned_cols=179 Identities=19% Similarity=0.236 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh-
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE- 237 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 237 (997)
...+++.|+|++|+||||+++.+++..... .+...|+ +....+..+++..|+..++.+............+.+.+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999999887632 2111333 3344577889999999988765433333333444443322
Q ss_pred --cCCcEEEEEccccccc--ccccccccc---CCCCCceEEEEeeCChhhhhc--------CC---CeeEEcCCCCHHHH
Q 038902 238 --RTKKVLIILDDVREKI--NLAVSGIPY---GEERKRCKVIVTSRRLDVCSK--------MS---DVTVQIEELGEEDR 299 (997)
Q Consensus 238 --~~k~~LlvlDdv~~~~--~~~~l~~~~---~~~~~gs~iivTtr~~~v~~~--------~~---~~~~~l~~L~~~~~ 299 (997)
.+++.+||+||++... .++.+.... ........|++|.... .... .. ...+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 3688999999998753 333332111 1122233455555432 1111 11 14688999999999
Q ss_pred HHHHHHHcC---CC-CChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 300 LKLFKQIAR---LP-DSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 300 ~~lf~~~~~---~~-~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
.+++..++. .. ...-.++..+.|++.++|.|..|+.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764 11 223345788999999999999999998776
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=5e-09 Score=114.52 Aligned_cols=264 Identities=15% Similarity=0.126 Sum_probs=153.3
Q ss_pred ccccccHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 140 SDLTHSSKALNSIMKLLKD-----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
.+|+|++..++.|..++.. ...+.+.++|++|+|||+||+.+++.... .+ ..+..+.......+. ..+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~--~~~~~~~~~~~~~l~-~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL--KITSGPALEKPGDLA-AILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE--EEeccchhcCchhHH-HHHHh
Confidence 3799999999999888852 34667899999999999999999998753 22 122221111222222 22233
Q ss_pred hCCCC----ch-hh-HHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcCC---
Q 038902 215 LKFKI----EE-ED-ELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKMS--- 285 (997)
Q Consensus 215 l~~~~----~~-~~-~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~--- 285 (997)
++... ++ .. .......+...+.+ .+..+|+|+..+...+.. .. .+.+-|..||+...+.....
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~--~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAMED--FRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHhh--hheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 32211 10 00 01223345556665 666677777665554432 11 12455667777654433221
Q ss_pred CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHc------CCCcccchhhhhhhhHHH
Q 038902 286 DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALR------GKLANESNESLVNIWNDA 359 (997)
Q Consensus 286 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~------~~~~~~~~~~~~~~w~~~ 359 (997)
...+.+++++.++..+++.+.+......-.++....|++.|+|.|-.+..+...+. +... -+.+..+.+
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~-----it~~~v~~~ 225 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKI-----INRDIALKA 225 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCC-----cCHHHHHHH
Confidence 24789999999999999998886433334456778899999999976655554331 1000 001111111
Q ss_pred HHHHHHhccccccccCcccccceeeeecccchhhhhHHHh-hhccCCCCCccchhhHHHHhhccccccccccHHHHHHHH
Q 038902 360 VEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQ-FCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKM 438 (997)
Q Consensus 360 l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 438 (997)
+ ..+...|..++++.+..+. ..+.++.+ .+..+++.... -. +...+
T Consensus 226 l--------------------~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----g~---~~~~~---- 272 (305)
T TIGR00635 226 L--------------------EMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----GE---DADTI---- 272 (305)
T ss_pred H--------------------HHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----CC---CcchH----
Confidence 1 1145667889988877776 56777654 45554444321 11 11122
Q ss_pred HHHHH-HHHhccccccc
Q 038902 439 QSIVE-DLRNRKILSYR 454 (997)
Q Consensus 439 ~~~l~-~L~~~~ll~~~ 454 (997)
...++ .|++.+|++..
T Consensus 273 ~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 273 EDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHhhhHHHHHcCCcccC
Confidence 22467 69999999643
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=2.6e-12 Score=133.95 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=142.6
Q ss_pred HHHhhccccceecCCCCCCccccccc-ccCCCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeeecccc
Q 038902 729 VKLLLEKTEDLTLTRSRDLEDIGAIE-VQGLTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEEN 806 (997)
Q Consensus 729 ~~~~l~~L~~L~L~~~~~l~~~~~~~-~~~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 806 (997)
+...+++|++|++++|+.+..-+... +.++..++.+.+++|. +..-.-......++.+..+++.+|..+++.-.
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---- 286 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---- 286 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH----
Confidence 44456777777777777655533222 2345556666666665 32211111223455566666667765554310
Q ss_pred chhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhh
Q 038902 807 EIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIV 886 (997)
Q Consensus 807 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 886 (997)
-.....+..|+.|..++|..+........ ..++++|+.|.++.|..+++........+++.|+.+++.+|..+.+--
T Consensus 287 --~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 287 --WLIACGCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred --HHHhhhhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 01233566778888888776554221111 135688888888888887776554555677888888888887666521
Q ss_pred cCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccch---hHHhhhcccceEEeecccccceeeccccccccccc
Q 038902 887 SSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSL---TIVKGLKELKELNIVGCNEMERIISVSDEERKEER 963 (997)
Q Consensus 887 ~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~---~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~ 963 (997)
+.. ...+++.|++|.++.|..+++.... ....+...|+.+.+++||.+++- ..+-
T Consensus 364 ------------L~s--ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--------~Le~ 421 (483)
T KOG4341|consen 364 ------------LAS--LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--------TLEH 421 (483)
T ss_pred ------------Hhh--hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH--------HHHH
Confidence 111 1356889999999999877764221 12234567889999999988752 1345
Q ss_pred ccccccccceecccccccccccCCCceeeccC
Q 038902 964 ADILIQLENLILEDLTELKTIYNGKEILEWAG 995 (997)
Q Consensus 964 ~~~l~~L~~L~l~~cp~L~~~~~~~~~~~~p~ 995 (997)
+...++|+.+++.+|....+-.-....-.+|.
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 56677888888888877765443333333443
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=1.1e-10 Score=128.97 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=17.5
Q ss_pred CCccEEEEeccCCccccch---hhHHHhcCCcEEeeeccc
Q 038902 759 TALMTMHLRACSLQRIFRS---SFYARARNAEELNVEYCY 795 (997)
Q Consensus 759 ~~L~~L~L~~~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 795 (997)
+.|++|++++|.+++.-.. .....+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 4566666666654421111 112234556666665554
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=1.8e-08 Score=110.78 Aligned_cols=277 Identities=15% Similarity=0.143 Sum_probs=156.9
Q ss_pred CCCCccccccccHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLK-----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
.+...+.+|+|++..++.+..++. ....+.+.|+|++|+||||+|+.+++.... .+ ..+..+. .....-+
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~--~~~~~~~-~~~~~~l 93 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI--RITSGPA-LEKPGDL 93 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce--EEEeccc-ccChHHH
Confidence 344556689999999999887774 234678899999999999999999998754 11 2222211 1111222
Q ss_pred HHHHHHhCCCC----ch-hh-HHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhh
Q 038902 209 DKIAELLKFKI----EE-ED-ELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCS 282 (997)
Q Consensus 209 ~~i~~~l~~~~----~~-~~-~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~ 282 (997)
..++..++... ++ .. .......+...+.+ .+..+|+|+..+...+.. .+ .+.+-|..||+...+..
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~--~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED--FRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh--cceeeeeccCccccceee---cC---CCceEEeecCCcccCCH
Confidence 33333332210 00 00 01122234455554 566666766554433221 11 12455666777544433
Q ss_pred cCC---CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHH
Q 038902 283 KMS---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDA 359 (997)
Q Consensus 283 ~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~ 359 (997)
.+. ...+++++++.++..+++.+.+......-.++....|++.|+|.|-.+..+...+. .|...
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-------------~~a~~ 232 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR-------------DFAQV 232 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-------------HHHHH
Confidence 221 24789999999999999999887544444556789999999999965554444321 11100
Q ss_pred HHHHHHhccccccccCcccccceeeeecccchhhhhHHHh-hhccCCCCCccchhhHHHHhhccccccccccHHHHHHHH
Q 038902 360 VEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQ-FCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKM 438 (997)
Q Consensus 360 l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 438 (997)
... .... ...-......+...+..|++..+..+. ....|+.+ .+..+.+... +-.+..+.++
T Consensus 233 ~~~-----~~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~-----lg~~~~~~~~----- 295 (328)
T PRK00080 233 KGD-----GVIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA-----LGEERDTIED----- 295 (328)
T ss_pred cCC-----CCCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH-----HCCCcchHHH-----
Confidence 000 0000 000012223356777889888888776 77778765 4666665432 2222222222
Q ss_pred HHHHH-HHHhcccccccc
Q 038902 439 QSIVE-DLRNRKILSYRE 455 (997)
Q Consensus 439 ~~~l~-~L~~~~ll~~~~ 455 (997)
.++ .|++.+|++...
T Consensus 296 --~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 296 --VYEPYLIQQGFIQRTP 311 (328)
T ss_pred --HhhHHHHHcCCcccCC
Confidence 355 789999996443
No 33
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=2.4e-09 Score=105.69 Aligned_cols=140 Identities=26% Similarity=0.320 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce-EEEEEccCCCHH---HHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK-AHVIVAESSDLR---RIQDKIAELLKFKIEEEDELQRRATLAK 233 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (997)
|++.|+|.+|+||||+++.++.+...... +.. +|+..+...... .+...|..+.......... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 68999999999999999999998876543 345 677766544332 3444444444322111111 2222
Q ss_pred HHHhcCCcEEEEEcccccccc---------ccccccccCC--CCCceEEEEeeCChhh---hhcCCC-eeEEcCCCCHHH
Q 038902 234 RLRERTKKVLIILDDVREKIN---------LAVSGIPYGE--ERKRCKVIVTSRRLDV---CSKMSD-VTVQIEELGEED 298 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~--~~~gs~iivTtr~~~v---~~~~~~-~~~~l~~L~~~~ 298 (997)
.+. ..++++||+|++++... +..+...+-. ..++.++|||+|.... ...... ..+++.+|++++
T Consensus 76 ~~~-~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 LLE-KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHH-cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 36999999999987633 1222222222 2568999999998766 333344 689999999999
Q ss_pred HHHHHHHHc
Q 038902 299 RLKLFKQIA 307 (997)
Q Consensus 299 ~~~lf~~~~ 307 (997)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997765
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=2.2e-11 Score=127.20 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=132.0
Q ss_pred hhccccceecCCCCCCccccccccc-CCCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeee-------
Q 038902 732 LLEKTEDLTLTRSRDLEDIGAIEVQ-GLTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFC------- 802 (997)
Q Consensus 732 ~l~~L~~L~L~~~~~l~~~~~~~~~-~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~------- 802 (997)
.++++++|.+.+|.++++.....+. .+++|++|++..|. +++..-......+++|++|+++.|+.++.--.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 3566666666666665554433332 35566666666655 55543333444566666666666655433000
Q ss_pred -------------ccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhc
Q 038902 803 -------------LEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLG 869 (997)
Q Consensus 803 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~ 869 (997)
.+...+......++-+.++++.+|..+++.. .......+..|+.|..++|.++.+...-...++++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 0000000112233444444444554444321 00011245667777777777766654444556777
Q ss_pred CCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccc
Q 038902 870 KLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEME 949 (997)
Q Consensus 870 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~ 949 (997)
+|+.|.+.+|.++++.-. ..+ ..+.+.|+.+++..|...++..-.....+++.||+|.+++|..++
T Consensus 321 ~L~~l~l~~c~~fsd~~f------------t~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGF------------TML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred ceEEEeccccchhhhhhh------------hhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 888888888877665221 111 245788999999988766554233455688999999999998887
Q ss_pred eeecccccccccccccccccccceecccccccccc
Q 038902 950 RIISVSDEERKEERADILIQLENLILEDLTELKTI 984 (997)
Q Consensus 950 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~ 984 (997)
+- .-............|..+.+++||.+.+-
T Consensus 387 D~----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 387 DE----GIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hh----hhhhhhhccccccccceeeecCCCCchHH
Confidence 52 00011223345568899999999998654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=5.1e-10 Score=123.74 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=55.5
Q ss_pred EEccCCCCC-CCChhHhhcCccccEEEecCcccC-----CCCccccccccCCEEEcCCCCccCC-------C-cccccCc
Q 038902 524 LFLQHNAFD-KIPPGFFEHMREINFLDLSYTNIS-----TLPGSIECLVKLRSLRAENTHLEKA-------P-LKKEFKE 589 (997)
Q Consensus 524 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~~l-------p-~~~~l~~ 589 (997)
|+|.++.+. ......+..+.+|+.|+++++.++ .++..+...++|++|+++++.+... + .+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555544 223445666777888888888774 3455566677788888877755421 1 3444555
Q ss_pred ccEEEecCCccc-ccCccccCCCC---CcEEeccCCc
Q 038902 590 LVILILRGSSIR-ELPKGLERWIN---LKLLDLSNNI 622 (997)
Q Consensus 590 L~~L~L~~~~l~-~lp~~~~~l~~---L~~L~l~~~~ 622 (997)
|+.|++++|.+. ..+..+..+.+ |++|++++|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 666666555543 12222333322 5555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=9.5e-10 Score=106.37 Aligned_cols=135 Identities=24% Similarity=0.266 Sum_probs=43.7
Q ss_pred cCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhh-cCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-c
Q 038902 506 DSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFE-HMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-L 583 (997)
Q Consensus 506 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~ 583 (997)
.+.+++.+...++.+++.|++.+|.+..+.. +. .+.+|++|++++|.|+.++ .+..+++|++|++++|.+++++ .
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 3445566665666777888888887766543 33 4677888888888887764 4677788888888888888775 3
Q ss_pred c-cccCcccEEEecCCcccccC--ccccCCCCCcEEeccCCccCCCC--ChHHhhcCCCCcEEEe
Q 038902 584 K-KEFKELVILILRGSSIRELP--KGLERWINLKLLDLSNNIFLQGI--PPNIISKLCQLEELYI 643 (997)
Q Consensus 584 ~-~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l 643 (997)
+ ..+++|++|++++|++..+. ..+..+++|+.|++.+|+....- ...++..+|+|+.|+-
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 4 35788888888888776542 44567778888888887643221 1233556677777664
No 37
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.87 E-value=8.5e-08 Score=110.10 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=184.7
Q ss_pred cccccHHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC
Q 038902 141 DLTHSSKALNSIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK 218 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~ 218 (997)
..+-|..- .+.|.. .+.|.+.|.-|+|.||||++...+..... .-...|.++.+. .++..+..-++..++..
T Consensus 20 ~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~--~~~v~Wlslde~dndp~rF~~yLi~al~~~ 93 (894)
T COG2909 20 NYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD--GAAVAWLSLDESDNDPARFLSYLIAALQQA 93 (894)
T ss_pred cccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc--ccceeEeecCCccCCHHHHHHHHHHHHHHh
Confidence 44455544 444443 36899999999999999999999984332 344599999765 67888888888888743
Q ss_pred Cchh--------------hHHHHHHHHHHHHHhcCCcEEEEEcccccccc--cc-ccccccCCCCCceEEEEeeCChhhh
Q 038902 219 IEEE--------------DELQRRATLAKRLRERTKKVLIILDDVREKIN--LA-VSGIPYGEERKRCKVIVTSRRLDVC 281 (997)
Q Consensus 219 ~~~~--------------~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~-~l~~~~~~~~~gs~iivTtr~~~v~ 281 (997)
.+.. +.......+...+.+..++..+||||-.-..+ ++ .+..-+.+...+-.+|||||+..-.
T Consensus 94 ~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 94 TPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred CccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCC
Confidence 2221 22335556666666666799999999754322 22 2222334556688999999987533
Q ss_pred hc--C--CCeeEEcC----CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhh
Q 038902 282 SK--M--SDVTVQIE----ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLV 353 (997)
Q Consensus 282 ~~--~--~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~ 353 (997)
.. + ....+++. .++.+|+-++|....+..- ...-.+.+.+...|-+-|+..++-.+++.+..
T Consensus 174 ~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~------- 243 (894)
T COG2909 174 GLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---DAADLKALYDRTEGWAAALQLIALALRNNTSA------- 243 (894)
T ss_pred cccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH-------
Confidence 21 1 11344443 5899999999988774221 22346788999999999999999988844330
Q ss_pred hhhHHHHHHHHHhccccccccCcccccce-eeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHH
Q 038902 354 NIWNDAVEEVIRESRDIKIEEIPKEEFLG-ITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMG 432 (997)
Q Consensus 354 ~~w~~~l~~~l~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 432 (997)
+.--..+.. ..+-+..- ..--++.||+++|..++-||+++. |. .+|+..-.+
T Consensus 244 ~q~~~~LsG------------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Ltg----------- 296 (894)
T COG2909 244 EQSLRGLSG------------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALTG----------- 296 (894)
T ss_pred HHHhhhccc------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHhc-----------
Confidence 111110000 00000000 112257899999999999999986 11 223222111
Q ss_pred HHHHHHHHHHHHHHhccccc-c-ccCCCeEEecchhHHHHHHhhcc
Q 038902 433 GVLNKMQSIVEDLRNRKILS-Y-REGEGTYRIHDNTRIVVKYFATK 476 (997)
Q Consensus 433 ~~~~~~~~~l~~L~~~~ll~-~-~~~~~~~~mHdli~~~~~~~~~~ 476 (997)
.+.+...+++|.+++++- + .+...-|+.|.+..+|.+..-..
T Consensus 297 --~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 --EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 122345799999999984 3 33456799999999998765444
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.4e-09 Score=103.57 Aligned_cols=122 Identities=21% Similarity=0.286 Sum_probs=56.7
Q ss_pred cCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccc-cccccCCEEEcC
Q 038902 497 KEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRAE 574 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~ 574 (997)
.+.+.|++.++.+..+.... .+.+|+.|++++|.+..+.. +..++.|++|++++|.|+.++..+ ..+++|+.|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 46789999999999887654 68999999999999988765 678999999999999999987655 469999999999
Q ss_pred CCCccCCC---cccccCcccEEEecCCcccccC----ccccCCCCCcEEeccC
Q 038902 575 NTHLEKAP---LKKEFKELVILILRGSSIRELP----KGLERWINLKLLDLSN 620 (997)
Q Consensus 575 ~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp----~~~~~l~~L~~L~l~~ 620 (997)
+|.+.++. .+..+++|++|++.+|.+...+ .-+..+++|+.||-..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99887764 7788999999999999887554 3466899999998654
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2.7e-10 Score=123.41 Aligned_cols=188 Identities=22% Similarity=0.283 Sum_probs=121.9
Q ss_pred EEcccCCCcCCCCCC---CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCc
Q 038902 502 ISLMDSGINKLPDEP---MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 502 L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l 578 (997)
+.+++-....+|... .+..-...+++.|.+..++..+ ..+..|..+.++.|.+..+|..++++..|.+|+|+.|.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence 344444444444322 4455556677777777666553 446667777777777777777777777777777777777
Q ss_pred cCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCC
Q 038902 579 EKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657 (997)
Q Consensus 579 ~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 657 (997)
+.+| .++.| -|+.|-+++|+++.+|.+++.+.+|.+||.+.|. +..+|.. ++.+.+|+.|.+..+
T Consensus 134 S~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn----------- 199 (722)
T KOG0532|consen 134 SHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRN----------- 199 (722)
T ss_pred hcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhh-----------
Confidence 7777 44444 3777777777777777777777777777777776 5666666 677777777776543
Q ss_pred CCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 658 PKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 658 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.-...+.++..| .|..||+++|++..+|..+ ..+..|+.|.+.+|..
T Consensus 200 ~l~~lp~El~~L-pLi~lDfScNkis~iPv~f-r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 200 HLEDLPEELCSL-PLIRLDFSCNKISYLPVDF-RKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhCCHHHhCC-ceeeeecccCceeecchhh-hhhhhheeeeeccCCC
Confidence 223445556644 5677777777776666544 3356666666655544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=6.2e-10 Score=110.89 Aligned_cols=130 Identities=22% Similarity=0.312 Sum_probs=111.6
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
|+-+..+++++|.+..+..+. -.|++|.|++++|.+..+.. +..+++|..||+|+|.++++..+-.++-|.++|.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 778889999999998888776 56999999999998776655 678999999999999988877666788899999999
Q ss_pred CCCccCCCcccccCcccEEEecCCccccc--CccccCCCCCcEEeccCCccCCCCC
Q 038902 575 NTHLEKAPLKKEFKELVILILRGSSIREL--PKGLERWINLKLLDLSNNIFLQGIP 628 (997)
Q Consensus 575 ~~~l~~lp~~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~ 628 (997)
+|.+.++..++++.+|..||+++|+|..+ -.++++++.|+++.+.+|. +..++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 99999999999999999999999988876 3678999999999999887 44444
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=6.1e-08 Score=109.82 Aligned_cols=181 Identities=14% Similarity=0.224 Sum_probs=111.4
Q ss_pred HhcCCCCccccccccHHHHHH---HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNS---IMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
.++.+...+.+++|++..+.. +..++..+....+.++|++|+||||+|+.+++.... .| +.++... ....++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~--~~l~a~~-~~~~~i 77 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PF--EALSAVT-SGVKDL 77 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE--EEEeccc-ccHHHH
Confidence 345566667789999988766 888887777888999999999999999999987643 22 2222211 111111
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCCceEEEE--eeCChh--hh
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIV--TSRRLD--VC 281 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv--Ttr~~~--v~ 281 (997)
+.+.. ....... .+++.+|++|+++... +.+.+...+ ..|..++| ||.+.. +.
T Consensus 78 -r~ii~----------------~~~~~~~-~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 78 -REVIE----------------EARQRRS-AGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVN 136 (413)
T ss_pred -HHHHH----------------HHHHhhh-cCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhcc
Confidence 11111 1111111 2488999999998752 333332222 22444444 344332 21
Q ss_pred hcCCC--eeEEcCCCCHHHHHHHHHHHcCCC--CC-hhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 282 SKMSD--VTVQIEELGEEDRLKLFKQIARLP--DS-EAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 282 ~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~--~~-~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
..+.. ..+.+.+++.++.+.++.+.+... .. .-.++....|++.|+|.|..+..+.
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11111 689999999999999998865421 11 3345677889999999887654433
No 42
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=2.6e-07 Score=106.57 Aligned_cols=190 Identities=13% Similarity=0.170 Sum_probs=123.8
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCC-----------------
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPH----------------- 191 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----------------- 191 (997)
+.++++-..+.+++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++.+.....+
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence 345677777889999999999999999877654 55799999999999999999876432111
Q ss_pred --ce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccccc--ccccccccC
Q 038902 192 --DK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKIN--LAVSGIPYG 263 (997)
Q Consensus 192 --~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~~--~~~l~~~~~ 263 (997)
.. ++++.+....+ ++.. .+.+.... .++.-++|||+++.... ++.+...+-
T Consensus 86 ~h~DviEIDAas~rgV--------------------DdIR-eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE 144 (830)
T PRK07003 86 RFVDYVEMDAASNRGV--------------------DEMA-ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE 144 (830)
T ss_pred CCceEEEecccccccH--------------------HHHH-HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH
Confidence 11 22222111111 1111 11111111 23556888999987643 565555444
Q ss_pred CCCCceEEEEeeCChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHHH
Q 038902 264 EERKRCKVIVTSRRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAGA 339 (997)
Q Consensus 264 ~~~~gs~iivTtr~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~ 339 (997)
......++|+||++.. +...+.. ..++++.++.++..+.+.+.+..+...-..+....|++.++|.. -|+..+-..
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred hcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4445678887777653 3333322 78999999999999999988765444445667888999998844 566654444
Q ss_pred H
Q 038902 340 L 340 (997)
Q Consensus 340 l 340 (997)
+
T Consensus 225 i 225 (830)
T PRK07003 225 I 225 (830)
T ss_pred H
Confidence 4
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.71 E-value=3.2e-06 Score=99.82 Aligned_cols=210 Identities=17% Similarity=0.149 Sum_probs=126.2
Q ss_pred HHHHhcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCC--c-e-EEEEEccC--
Q 038902 128 DELMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPH--D-K-AHVIVAES-- 201 (997)
Q Consensus 128 ~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--~-~-~wv~v~~~-- 201 (997)
+.+.+..+...+.+++|+...+..+.+.+.......+.|+|++|+||||+|+.+++..+....+ . . -|+.+...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 3345555666777899999999999888876667789999999999999999999876543222 1 2 45555321
Q ss_pred -CCHHHHHHHH---------------HHHhCCCC----------------c--hhhHHHHHHHHHHHHHhcCCcEEEEEc
Q 038902 202 -SDLRRIQDKI---------------AELLKFKI----------------E--EEDELQRRATLAKRLRERTKKVLIILD 247 (997)
Q Consensus 202 -~~~~~~~~~i---------------~~~l~~~~----------------~--~~~~~~~~~~l~~~l~~~~k~~LlvlD 247 (997)
.+...+...+ +...+... + ..-....+..+.+.+.+ +++.++-|
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~--~~v~~~~~ 299 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED--KRVEFSSS 299 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh--CeEEeecc
Confidence 1222221111 11111100 0 00112356677788887 88888877
Q ss_pred ccccc--ccccccccccCCCCCceEEEE--eeCChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHH
Q 038902 248 DVREK--INLAVSGIPYGEERKRCKVIV--TSRRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAK 320 (997)
Q Consensus 248 dv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 320 (997)
+.|.. ..|..+...+....+...|++ ||++.. +...+.. ..+.+.+++.+|.+.++++.+......-.+++..
T Consensus 300 ~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~ 379 (615)
T TIGR02903 300 YYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEE 379 (615)
T ss_pred eeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66654 346666555555555555555 566443 2222222 5778999999999999998775322112234555
Q ss_pred HHHHHhCCchhHHHHHHHH
Q 038902 321 VIVKACGSLPNAIAIVAGA 339 (997)
Q Consensus 321 ~i~~~~~glPlai~~~~~~ 339 (997)
.|++.+..-+-|+..++.+
T Consensus 380 ~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 380 LIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHCCCcHHHHHHHHHHH
Confidence 5555554446666655544
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.1e-07 Score=100.19 Aligned_cols=175 Identities=15% Similarity=0.231 Sum_probs=107.5
Q ss_pred HHhcCCCCccccccccHHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 130 LMASRDIHSVSDLTHSSKAL---NSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+..+-+...+.++||.+.-+ .-|..++..+.+.-...|||+|+||||||+.++..... +|..+-...+ .+++
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f~~~sAv~~---gvkd 88 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AFEALSAVTS---GVKD 88 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ceEEeccccc---cHHH
Confidence 34444555566777766543 44556667788888999999999999999999997654 4433222212 2222
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEE--eeCChh--h
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIV--TSRRLD--V 280 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~~~--v 280 (997)
+...+ . .-++... .|++.+|++|+|..- .+-+.+ +|.-.+|.-|+| ||-++. +
T Consensus 89 lr~i~-e----------------~a~~~~~-~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~l 147 (436)
T COG2256 89 LREII-E----------------EARKNRL-LGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFEL 147 (436)
T ss_pred HHHHH-H----------------HHHHHHh-cCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeee
Confidence 22211 1 1111222 268999999999765 333434 445567877766 444432 2
Q ss_pred hhcC--CCeeEEcCCCCHHHHHHHHHHHcC-CC-----CCh-hhHHHHHHHHHHhCCch
Q 038902 281 CSKM--SDVTVQIEELGEEDRLKLFKQIAR-LP-----DSE-AFEGAAKVIVKACGSLP 330 (997)
Q Consensus 281 ~~~~--~~~~~~l~~L~~~~~~~lf~~~~~-~~-----~~~-~~~~~~~~i~~~~~glP 330 (997)
-..+ ...++.+++|+.++-.+++++.+- .. ... -.++....++..++|--
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 1111 227899999999999999988442 11 111 23446777888888854
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=9.8e-10 Score=119.12 Aligned_cols=146 Identities=23% Similarity=0.335 Sum_probs=97.7
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
+..+..+.+..|.+..+|... .+..|..|+++.|++..++..++ ..-|++|.+++|+++.+|..++.+.+|..|+.+
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence 444555556666666666654 66677777777777666666543 234677777777777777777766777777777
Q ss_pred CCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 575 NTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 575 ~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
.|.+..+| .++.+.+|+.|+++.|++..+|.++. .-.|..||++.|+ +..+|.. |.++..|++|-|.+|
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc-eeecchh-hhhhhhheeeeeccC
Confidence 77777766 67777777777777777777776666 4456677777665 6667766 667777777776554
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=7.1e-07 Score=103.32 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=125.8
Q ss_pred cccccHHHHHHHHHHhcc----CC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhC------CCceEEEEEccCCCHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD----DK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIA------PHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~----~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~wv~v~~~~~~~~~~~ 209 (997)
.+.||+.|+++|...|.. .. ..++-|+|++|+|||++++.|.+++.... .|..++|++....+...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 678999999999887743 22 35778999999999999999998875321 25558888877788899999
Q ss_pred HHHHHhCCCCch--hhHHHHHHHHHHHHHh-cCCcEEEEEcccccccc--ccccccccC-CCCCceEEEE--eeCChh--
Q 038902 210 KIAELLKFKIEE--EDELQRRATLAKRLRE-RTKKVLIILDDVREKIN--LAVSGIPYG-EERKRCKVIV--TSRRLD-- 279 (997)
Q Consensus 210 ~i~~~l~~~~~~--~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~iiv--Ttr~~~-- 279 (997)
.|++++....+. .........+...+.. .....+||||+|+.... -+.+...+. ....+++|+| +|.+.+
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcc
Confidence 999988433222 1223344445554432 22346999999976521 111211111 1223455544 443322
Q ss_pred ------hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHhCCchhHHHHHHHHHc
Q 038902 280 ------VCSKMSDVTVQIEELGEEDRLKLFKQIARLP----DSEAFEGAAKVIVKACGSLPNAIAIVAGALR 341 (997)
Q Consensus 280 ------v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~----~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 341 (997)
+..+++...+.+++++.++-.+++..++... ++..++-+|+.+++.-|-.-.||.++-.+..
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 2223333457889999999999999888521 2233334444444444556777777766654
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=1.3e-07 Score=97.93 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
.+.+.++|+.|+|||+|++++++..... .....++.+.... .. ...+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~---~~--------------------~~~~~~~~~---~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQ---YF--------------------SPAVLENLE---Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhh---hh--------------------hHHHHhhcc---c
Confidence 4578999999999999999999987553 2233666653110 00 001122222 3
Q ss_pred cEEEEEcccccc---ccccc-cccccCCC-CCceEEEE-eeCC---------hhhhhcCCC-eeEEcCCCCHHHHHHHHH
Q 038902 241 KVLIILDDVREK---INLAV-SGIPYGEE-RKRCKVIV-TSRR---------LDVCSKMSD-VTVQIEELGEEDRLKLFK 304 (997)
Q Consensus 241 ~~LlvlDdv~~~---~~~~~-l~~~~~~~-~~gs~iiv-Ttr~---------~~v~~~~~~-~~~~l~~L~~~~~~~lf~ 304 (997)
.-+|++||+|.. ..|.. +...+... ..|..+|| |++. +++..++.. ..++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 458999999874 33442 22222211 23555544 4543 355556555 689999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 305 QIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
+.+....-.--+++..-|++++.|..-++..
T Consensus 172 ~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 172 RNAYQRGIELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 9887444444566788889999886655443
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.2e-06 Score=94.05 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=136.6
Q ss_pred cccccHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLK----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.+.+|+.+++++...+. ++.+.-+.|+|+.|+|||+.++.+.++...... .+.++|++....+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 58899999999987763 344455999999999999999999999877533 3359999999999999999999999
Q ss_pred CC-CCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccc--cccccccCC-CCCceEE--EEeeCChh--------hh
Q 038902 216 KF-KIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINL--AVSGIPYGE-ERKRCKV--IVTSRRLD--------VC 281 (997)
Q Consensus 216 ~~-~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~--~~l~~~~~~-~~~gs~i--ivTtr~~~--------v~ 281 (997)
+. +....+..+....+.+.+...++.++||||+++....- +.+..-+.. ....++| |..+.+.. |.
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 63 22344566777788888887789999999999875332 222222221 1224544 34444333 33
Q ss_pred hcCCCeeEEcCCCCHHHHHHHHHHHcC---C---CCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 282 SKMSDVTVQIEELGEEDRLKLFKQIAR---L---PDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 282 ~~~~~~~~~l~~L~~~~~~~lf~~~~~---~---~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
..++...+.+++.+.+|-...+..++. . .++.-++-++...++..|-.-.||..+-.+.
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 344445688999999999999988774 1 1223333344444444445666666554433
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.7e-09 Score=109.49 Aligned_cols=185 Identities=22% Similarity=0.227 Sum_probs=122.5
Q ss_pred hcCceEEEcccCCCcCCCC---CCCCCCccEEEccCCCCCCCC--hhHhhcCccccEEEecCcccCCCCcc--ccccccC
Q 038902 496 LKEYKKISLMDSGINKLPD---EPMCPQLLTLFLQHNAFDKIP--PGFFEHMREINFLDLSYTNISTLPGS--IECLVKL 568 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~--l~~l~~L 568 (997)
.+++|.+++.+..+...+. ...|++++.|+|++|-+.... ..+...+++|+.|+++.|.+....++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 5678888888777666553 237999999999998765443 35667899999999999977633222 2467899
Q ss_pred CEEEcCCCCccC--CC-cccccCcccEEEecCCc-ccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEee
Q 038902 569 RSLRAENTHLEK--AP-LKKEFKELVILILRGSS-IRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIG 644 (997)
Q Consensus 569 ~~L~L~~~~l~~--lp-~~~~l~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 644 (997)
+.|.++.|.++. +- ....+++|+.|++.+|. +..-......++.|+.|||++|..+..-.....+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999998773 22 55677899999999884 332233445678899999999885433211225778888888876
Q ss_pred cCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccc
Q 038902 645 NSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEV 684 (997)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 684 (997)
.|.. ..+...+.....-....++|+.|++..|.+..
T Consensus 280 ~tgi----~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 280 STGI----ASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccCc----chhcCCCccchhhhcccccceeeecccCcccc
Confidence 6521 11111222223334556677777777766533
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.65 E-value=4.8e-07 Score=89.25 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=102.7
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLK-----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
.++-+...+.+|+|.+.-++.+.-++. ++....+.+|||+|+||||||+-+++.... +| .+++...-....
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~--~~~sg~~i~k~~ 90 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NF--KITSGPAIEKAG 90 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E--EEEECCC--SCH
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--Ce--EeccchhhhhHH
Confidence 344566677799999988887654443 245778999999999999999999998765 33 223221111112
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--c-------cccccc--ccCCC---------
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--N-------LAVSGI--PYGEE--------- 265 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~-------~~~l~~--~~~~~--------- 265 (997)
++ ..++..+ +++-+|++|++.... + .++... ....+
T Consensus 91 dl-~~il~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 91 DL-AAILTNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp HH-HHHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred HH-HHHHHhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 22 1122222 145566677774431 0 111100 00100
Q ss_pred -CCceEEEEeeCChhhhhcCCC---eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHc
Q 038902 266 -RKRCKVIVTSRRLDVCSKMSD---VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALR 341 (997)
Q Consensus 266 -~~gs~iivTtr~~~v~~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 341 (997)
.+-+-|=-|||...+..-+.. ...+++.++.+|-.++..+.+....-+-.++.+.+|++++.|-|--+.-+-...+
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 122345678888766665555 4668999999999999999887666666677899999999999976655444433
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2.3e-08 Score=113.86 Aligned_cols=174 Identities=29% Similarity=0.383 Sum_probs=112.2
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCc-cccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEE
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMR-EINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILI 594 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~ 594 (997)
..+.++.|++.+|.+..+++.. ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+| ..+.+++|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 4566777777777766666532 3342 677777777777777666777777777777777777777 334777777777
Q ss_pred ecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCE
Q 038902 595 LRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTV 674 (997)
Q Consensus 595 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 674 (997)
+++|++..+|..+..+..|+.|.+++|... ..+.. +.++.++..+.+.++ .....+..++.+++++.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n-----------~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNN-----------KLEDLPESIGNLSNLET 259 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCc-----------eeeeccchhccccccce
Confidence 777777777766666666777777777422 23322 566666666664432 11111344666777777
Q ss_pred EEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 675 LYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 675 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
|+++.|.+..++. ..+..+++.|+++++..
T Consensus 260 L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 260 LDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ecccccccccccc--ccccCccCEEeccCccc
Confidence 7777777666655 44556677776665544
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=7.6e-07 Score=101.08 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=119.0
Q ss_pred HHHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC------------------
Q 038902 129 ELMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA------------------ 189 (997)
Q Consensus 129 ~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~------------------ 189 (997)
.+.++++...+.+++|.+...+.|...+..+.+ ..+.++|++|+||||+|+.+++......
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 345667777888999999998888888877766 4578999999999999999998764311
Q ss_pred --CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--cccccccccc
Q 038902 190 --PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPY 262 (997)
Q Consensus 190 --~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~ 262 (997)
+.+...++.+....+..+ ..+.+.... .+++-++|+|+++.. ...+.+...+
T Consensus 83 g~~~dv~el~aa~~~gid~i---------------------R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L 141 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEI---------------------RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTL 141 (472)
T ss_pred CCCCccEEEeCcccCCHHHH---------------------HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHH
Confidence 011122222211111111 122222221 236679999999764 2334443333
Q ss_pred CCCCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC-chhHHHHHHH
Q 038902 263 GEERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS-LPNAIAIVAG 338 (997)
Q Consensus 263 ~~~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 338 (997)
........+|++|.+ ..+...+.. ..+++.+++.++....+++.+....-.-.++....|++.++| ++.|+..+..
T Consensus 142 E~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 142 EEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred HhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 332334455545443 444443333 789999999999999888877533323334567788888865 5777777765
Q ss_pred HH
Q 038902 339 AL 340 (997)
Q Consensus 339 ~l 340 (997)
+.
T Consensus 222 l~ 223 (472)
T PRK14962 222 VW 223 (472)
T ss_pred HH
Confidence 44
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.9e-09 Score=109.40 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=130.2
Q ss_pred CCCCCccEEEccCCCCCCCCh-hHhhcCccccEEEecCcccC---CCCccccccccCCEEEcCCCCccCCC---cccccC
Q 038902 516 PMCPQLLTLFLQHNAFDKIPP-GFFEHMREINFLDLSYTNIS---TLPGSIECLVKLRSLRAENTHLEKAP---LKKEFK 588 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~~l~~lp---~~~~l~ 588 (997)
.++.+|+.+.|.++.....+. .....|++++.||++.|-+. .+-.....|++|+.|+++.|.+.... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 378999999999988655443 45678999999999999665 33455678999999999999877653 445788
Q ss_pred cccEEEecCCccc--ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhh
Q 038902 589 ELVILILRGSSIR--ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEV 666 (997)
Q Consensus 589 ~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 666 (997)
+|+.|.++.|++. .+-.-...+++|..|++..|..+...... ...+..|++|+++++.. ........+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l---------i~~~~~~~~ 267 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL---------IDFDQGYKV 267 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc---------ccccccccc
Confidence 9999999999887 23334457899999999998422221111 34577899999987632 222333557
Q ss_pred hCCCCCCEEEEEecccccccccc------CCCCCCccEEEEEecCc-cc
Q 038902 667 ASLSRLTVLYIHINSTEVLSKQF------DGPWGNLKRFRVQVNDD-YW 708 (997)
Q Consensus 667 ~~l~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~-~~ 708 (997)
+.++.|+.|+++.+++..+..-. ...+++|+.|++..|.+ .|
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 88899999999988765443211 12357778887777766 44
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=6.8e-07 Score=105.38 Aligned_cols=204 Identities=13% Similarity=0.147 Sum_probs=120.5
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+.++++...+.+++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++........... .+..-...
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~------pCg~C~sC 79 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT------PCGVCSSC 79 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC------CCCCchHH
Confidence 3556677777799999999999999998777665 4899999999999999999887532111000 00000000
Q ss_pred HHHHHHhC-----CCCc-hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC
Q 038902 209 DKIAELLK-----FKIE-EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 209 ~~i~~~l~-----~~~~-~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
..|..... .+.. ....+. ++.+.+.+.. .+++-++|+|++... ...+.+...+-......++|++|.+
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 01110000 0000 000111 1111111111 257789999999876 3345544444333345566655554
Q ss_pred -hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHHHH
Q 038902 278 -LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAGAL 340 (997)
Q Consensus 278 -~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l 340 (997)
..+...+.. ..|++++++.++..+.+.+.+.........+....|++.++|.|- |+..+-..+
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAI 225 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444332222 789999999999999998877543334445678889999999774 444443333
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.60 E-value=1.4e-06 Score=100.79 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=113.8
Q ss_pred cCCCCccccccccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
.++...+.+++|++..++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+.+-++.+...+.. ..
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~ielnasd~r~~~-~i 81 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVIELNASDQRTAD-VI 81 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEEcccccccHH-HH
Confidence 34555666899999999999999853 2268899999999999999999999863 444555555443322 22
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc------ccccccccCCCCCceEEEEeeCChh-hh
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN------LAVSGIPYGEERKRCKVIVTSRRLD-VC 281 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtr~~~-v~ 281 (997)
..++....... .+.. .++-+||+|+++.... +..+...+. ..+..||+|+.+.. ..
T Consensus 82 ~~~i~~~~~~~--------------sl~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 82 ERVAGEAATSG--------------SLFG-ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHhhccC--------------cccC-CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 22222211100 0000 2678999999976522 233322222 22345666665432 11
Q ss_pred h-cCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 282 S-KMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 282 ~-~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
. .... ..+.+.+++.++....+.+.+....-.-..+....|++.++|..-.+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1222 6899999999999988888775333333356788999999996655443
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=3.8e-07 Score=95.01 Aligned_cols=166 Identities=14% Similarity=0.195 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchh
Q 038902 144 HSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEE 222 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (997)
+....++.+.+++.....+.+.|+|+.|+|||++|+.+++.... .... ++++++.-. ...
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~------~~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELA------QAD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHH------HhH-----------
Confidence 35567788888766666788999999999999999999988754 2223 666543221 100
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEccccccc---ccc-ccccccCC-CCCceEEEEeeCChh---------hhhcCCC-e
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVREKI---NLA-VSGIPYGE-ERKRCKVIVTSRRLD---------VCSKMSD-V 287 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~~-~ 287 (997)
..+...+. +.-+||+||++... .|. .+...+.. ...+.++|+||+... +...+.. .
T Consensus 82 ------~~~~~~~~---~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 82 ------PEVLEGLE---QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred ------HHHHhhcc---cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 01111222 33489999997653 222 23222211 122347888887532 2223332 5
Q ss_pred eEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 288 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 288 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
.++++++++++...++++.+......--++..+.+++.+.|.|..+..+.
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 89999999999999987755322222334566778888888887766553
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.59 E-value=6.4e-07 Score=99.71 Aligned_cols=200 Identities=13% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCH--HHHHH
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDL--RRIQD 209 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~--~~~~~ 209 (997)
++...+.+++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++..... .++. +.++++...+. ..+..
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhc
Confidence 4455556889999999999999987776678899999999999999999887532 2222 44444321100 00000
Q ss_pred --HHHHHhCCC-CchhhHHHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh-h
Q 038902 210 --KIAELLKFK-IEEEDELQRRATLAKRLRE----RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-D 279 (997)
Q Consensus 210 --~i~~~l~~~-~~~~~~~~~~~~l~~~l~~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~ 279 (997)
.....++.. ..........+.+.+.... .+.+-+||+||+.... ....+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 0000011122222222211 1245589999996542 1222332232233456777777543 2
Q ss_pred hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 280 VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 280 v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
+...+.. ..+++.+++.++...++.+.+......-..+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3232322 678999999999999988876533333345677888899988654443
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.4e-06 Score=96.91 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=116.2
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+.++++...+.+++|.+..++.+...+..+.+ ..+.++|+.|+||||+|+.+++.......... ..+..-...
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~------~pc~~c~~c 79 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS------NPCRKCIIC 79 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCCCHHH
Confidence 35566777777999999999999998877654 45789999999999999999988642111100 000000011
Q ss_pred HHHHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCC
Q 038902 209 DKIAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 209 ~~i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
..+......+. + .... .....+.+.+.. .+++-++|+|+++... .++.+...+.......++|++|.+
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v-~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKV-EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred HHHhcCCCCceEEecccccCCH-HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 11111100000 0 0001 111122222211 1356699999998764 344554444444456677776654
Q ss_pred h-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 278 L-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 278 ~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
. .+...... ..+++.+++.++..+.+.+.+......-.++.+..|++.++|.|-.
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 3 34333332 7899999999999998888765333333445678899999997753
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.58 E-value=3.8e-07 Score=99.80 Aligned_cols=183 Identities=11% Similarity=0.158 Sum_probs=111.8
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQD 209 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~ 209 (997)
++++...+.+++|.+..++.|.+++..+..+.+.++|++|+||||+|+.+++..... .|.. +-++.+....... .+
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr 82 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VR 82 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HH
Confidence 445666777899999999999988877777778899999999999999999986431 2322 2222222222221 11
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCCceEEEEeeCCh-hhhhcCCC
Q 038902 210 KIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD 286 (997)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~ 286 (997)
.++..+..... .+. .++.-++++|+++.... .+.+...+......+++|+++... .+......
T Consensus 83 ~~i~~~~~~~~-------------~~~-~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 83 NKIKMFAQKKV-------------TLP-PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHhccc-------------cCC-CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 11111100000 000 13567999999987522 222322222223456777777543 22222222
Q ss_pred --eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 287 --VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 287 --~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
..++++++++++....+.+.+..+.-.-.++....|++.++|..
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 67999999999999998887754333333556788899998865
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=8.5e-07 Score=101.01 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=116.8
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQ 208 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~ 208 (997)
++++...+.+++|.+..+..|...+..+.+ +.+.++|+.|+||||+|+.+++.......... .+..+... .-.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C 88 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNC 88 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHH
Confidence 345666677899999999999887766654 57889999999999999999988643211100 00000000 000
Q ss_pred HHHHHHhCCC-----C-chhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEE-eeC
Q 038902 209 DKIAELLKFK-----I-EEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIV-TSR 276 (997)
Q Consensus 209 ~~i~~~l~~~-----~-~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-Ttr 276 (997)
..|......+ . .....++.. .+.+.... .+++-++|+|+++.. ..++.+...+......+.+|+ ||+
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir-~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIR-RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHH-HHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 1111000000 0 000111111 11111111 246778999999875 346666555544445566665 444
Q ss_pred ChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHH
Q 038902 277 RLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIV 336 (997)
Q Consensus 277 ~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 336 (997)
...+...+.. ..+++.+++.++....+.+.+......-..+....|++.++|.+ .|+..+
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455443332 68999999999999999988864443334556778999999966 343433
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-06 Score=100.06 Aligned_cols=208 Identities=13% Similarity=0.153 Sum_probs=123.0
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRI 207 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~ 207 (997)
+.++++...+.+++|.+...+.|..++..+... .+.++|+.|+||||+|+.+++.......+.. .|.+.+... +...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~ 82 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRG 82 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcC
Confidence 445566677778999999999999998877654 5599999999999999999998764323332 333322110 0000
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC-hhhh
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR-LDVC 281 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~ 281 (997)
....+..+... ..... .....+.+.+.. .+++-++|+|+++.. ..++.+...+........+|++|.. ..+.
T Consensus 83 ~h~dv~el~~~-~~~~v-d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 83 AHPDVLEIDAA-SNNSV-EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred CCCceEEeccc-ccCCH-HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 00000000000 00011 111222333322 246678999999765 3355554444433445555555543 4443
Q ss_pred hcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHHHH
Q 038902 282 SKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAGAL 340 (997)
Q Consensus 282 ~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l 340 (997)
..+.. ..+++.+++.++....+.+.+....-.-.++....|++.++|.+- |+..+-..+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33333 789999999999999998877533333345678889999999874 444444433
No 62
>PTZ00202 tuzin; Provisional
Probab=98.56 E-value=9.2e-06 Score=87.53 Aligned_cols=162 Identities=13% Similarity=0.147 Sum_probs=106.3
Q ss_pred ccccccccHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 138 SVSDLTHSSKALNSIMKLLKD---DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
....|+||+.++..+...+.+ +..+++.|.|++|+|||||++.+..... +-...++.. +..++++.|+.+
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr---g~eElLr~LL~A 332 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR---GTEDTLRSVVKA 332 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC---CHHHHHHHHHHH
Confidence 355999999999999998854 2356999999999999999999996553 222333333 679999999999
Q ss_pred hCCCCchhhHHHHHHHHHHHHHh----cCCcEEEEEccccccccccccc---cccCCCCCceEEEEeeCChhhhhcCCC-
Q 038902 215 LKFKIEEEDELQRRATLAKRLRE----RTKKVLIILDDVREKINLAVSG---IPYGEERKRCKVIVTSRRLDVCSKMSD- 286 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~----~~k~~LlvlDdv~~~~~~~~l~---~~~~~~~~gs~iivTtr~~~v~~~~~~- 286 (997)
||.+.. .........|.+.+.. ++++.+||+- +.+-..+..+. ..+.....-|.|++----+.+......
T Consensus 333 LGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 333 LGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred cCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccC
Confidence 997432 2223444444444443 3678888874 33332222111 123344556777766544433221111
Q ss_pred ---eeEEcCCCCHHHHHHHHHHHcC
Q 038902 287 ---VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 287 ---~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
.-|-+++++.++|..+-++...
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhccc
Confidence 6788999999999999887653
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=7.7e-07 Score=101.46 Aligned_cols=208 Identities=12% Similarity=0.150 Sum_probs=119.2
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++-..+.+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.+-....-...-+. +..+..-....
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~sC~ 85 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCRACT 85 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccHHHH
Confidence 44566677779999999999999999877765 56889999999999999999887531100000000 00000001111
Q ss_pred HHHHH-----hCCCCc-hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEee-CC
Q 038902 210 KIAEL-----LKFKIE-EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTS-RR 277 (997)
Q Consensus 210 ~i~~~-----l~~~~~-~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~ 277 (997)
.|... +..+.. ....++.. .+.+.+.. .++.-++|+|+++.. ..++.+...+-.-....++|++| ..
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIR-eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMA-QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 11100 000000 00111111 12222211 356779999999876 33455544443333445555554 44
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH-HHHHHHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI-AIVAGAL 340 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai-~~~~~~l 340 (997)
..+...+.. ..+.++.++.++..+.+.+.+..+......+....|++.++|.|.-. ..+-..+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQai 230 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAI 230 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445443333 78999999999999998887754333333456688999999988544 3334433
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.9e-07 Score=101.35 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=119.8
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|.+..+..|..++..+.+. .+.++|+.|+||||+|+.+++........... .+..... ..
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~--pCg~C~s----C~ 82 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE--PCNECTS----CL 82 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc--ccCCCcH----HH
Confidence 44566677779999999999999999887764 57999999999999999999876432111000 0000111 11
Q ss_pred HHHHHhCCCC---ch--hhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeC-Ch
Q 038902 210 KIAELLKFKI---EE--EDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSR-RL 278 (997)
Q Consensus 210 ~i~~~l~~~~---~~--~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr-~~ 278 (997)
.|......+. +. ....+....+.+.+.. .++.-++|+|++... ..++++...+-.......+|++|. ..
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 2221111110 00 0001112222222221 346779999999876 345665444433334455554554 44
Q ss_pred hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHH
Q 038902 279 DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIV 336 (997)
Q Consensus 279 ~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 336 (997)
.+...... ..|.+.+++.++..+.+.+.+..+.-.-.++....|++.++|.+ -|+..+
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 44443333 67999999999999988887754433344567788999999987 344444
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-06 Score=100.09 Aligned_cols=201 Identities=12% Similarity=0.137 Sum_probs=118.3
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|.+...+.|..++..+.+ ..+.++|+.|+||||+|+.+++...... ++... .++.-...+
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~~-pCg~C~sC~ 79 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTST-PCEVCATCK 79 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCCC-CCccCHHHH
Confidence 4556677777999999999999999987764 5678999999999999999998764311 10000 000000111
Q ss_pred HHHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh
Q 038902 210 KIAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 210 ~i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
.|...-..+. + ....+. ...+...... .+++-++|+|+|.... ..+.+...+.....+.++|++|.+.
T Consensus 80 ~I~~g~hpDviEIDAAs~~~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRTKVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred HHhcCCCCceEEecccccCCHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 1111000000 0 001111 1111111111 2466789999998753 3444444443334556777777654
Q ss_pred h-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHH
Q 038902 279 D-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAG 338 (997)
Q Consensus 279 ~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 338 (997)
. +...... ..+++++++.++..+.+.+.+....-.-..+....|++.++|.+ -|+..+-.
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQ 222 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 2222112 78999999999999999888764444445567788999999966 44443333
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1e-08 Score=102.32 Aligned_cols=79 Identities=28% Similarity=0.272 Sum_probs=38.1
Q ss_pred cccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCc
Q 038902 544 EINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNI 622 (997)
Q Consensus 544 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~ 622 (997)
.|..||+|+|.|+.+..++.-.+.++.|+++.|++..+..+..+++|+.|||++|.+..+..+-.++.|.++|.+++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 3444555555555444444445555555555555444444444455555555555444443333344444555554443
No 67
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=4.1e-07 Score=85.55 Aligned_cols=115 Identities=24% Similarity=0.329 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC----CCceEEEEEccCCCHHHHHHHHHHHhCCCCch-hhHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA----PHDKAHVIVAESSDLRRIQDKIAELLKFKIEE-EDELQRRATLAKR 234 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 234 (997)
+.+.+.|+|++|+|||++++.+++...... +.+.+|+.+....+...+...|+.+++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999999875321 23339999988889999999999999887665 4556666888888
Q ss_pred HHhcCCcEEEEEcccccc-c--cccccccccCCCCCceEEEEeeCC
Q 038902 235 LRERTKKVLIILDDVREK-I--NLAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 235 l~~~~k~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
+.+ .+..+||+||++.. . .++.+... .+ ..+.+||+..+.
T Consensus 83 l~~-~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDR-RRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHH-CTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred HHh-cCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 887 34469999999875 2 22233222 22 556677777665
No 68
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=1.9e-06 Score=105.30 Aligned_cols=311 Identities=12% Similarity=0.104 Sum_probs=172.3
Q ss_pred ccccHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCce-EEEEEccCC---CHHHHHHHHHH
Q 038902 142 LTHSSKALNSIMKLLKD---DKVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDK-AHVIVAESS---DLRRIQDKIAE 213 (997)
Q Consensus 142 ~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~-~wv~v~~~~---~~~~~~~~i~~ 213 (997)
++||+.+++.|.+.+.. +...++.+.|..|||||+++++|......+ ..|-. .+-...... ...+.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999988853 456799999999999999999999887654 11111 110011111 12233344433
Q ss_pred Hh-------------------CCCC-----------------c------hhhHHHHHH-HHHHHH---HhcCCcEEEEEc
Q 038902 214 LL-------------------KFKI-----------------E------EEDELQRRA-TLAKRL---RERTKKVLIILD 247 (997)
Q Consensus 214 ~l-------------------~~~~-----------------~------~~~~~~~~~-~l~~~l---~~~~k~~LlvlD 247 (997)
++ +... + ......... .+.+.+ ..+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1100 0 000011111 111222 114679999999
Q ss_pred cc-cccccccccccccCCCC-----CceEEEE--eeCCh--hhhhcCCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhH
Q 038902 248 DV-REKINLAVSGIPYGEER-----KRCKVIV--TSRRL--DVCSKMSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFE 316 (997)
Q Consensus 248 dv-~~~~~~~~l~~~~~~~~-----~gs~iiv--Ttr~~--~v~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 316 (997)
|+ |-+..--.+...+.... .-..|.. |.+.. .+-..-.. ..+.|.||+..+.-.+.....+.. .....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-~~~~~ 240 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT-KLLPA 240 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-ccccc
Confidence 99 44322111111110000 0112322 22222 11122222 899999999999999998888642 22234
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhH
Q 038902 317 GAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKG 396 (997)
Q Consensus 317 ~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 396 (997)
+....|.++.+|+|+-+..+-..+.....- .-+.....|..-... ++. ....+.+...+..-.+.||...+.
T Consensus 241 p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i-~f~~~~~~w~~~~~~-i~~------~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 241 PLLELIFEKTKGNPFFIEEFLKALYEEGLL-VFNFDTGAWQCSIAS-LGI------LATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred hHHHHHHHHhcCCCccHHHHHHHHHhCCee-EecCCCcceeccHHh-cCC------chhhHHHHHHHHHHHhcCCHHHHH
Confidence 578899999999999999999888764210 000002344432222 111 112233555677788999999999
Q ss_pred HHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHHhccccccc-----cCCCe---E-EecchhH
Q 038902 397 CLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSIVEDLRNRKILSYR-----EGEGT---Y-RIHDNTR 467 (997)
Q Consensus 397 cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~---~-~mHdli~ 467 (997)
.....|++.. .|+.+.|...|-.. .... .....+.|....++... ..... | -.|+.++
T Consensus 313 Vl~~AA~iG~--~F~l~~La~l~~~~--------~~~~---a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIGN--RFDLDTLAALAEDS--------PALE---AAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhCc--cCCHHHHHHHHhhc--------hHHH---HHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999986 57777776655321 1111 22245555555554321 11111 2 3588888
Q ss_pred HHHHHhh
Q 038902 468 IVVKYFA 474 (997)
Q Consensus 468 ~~~~~~~ 474 (997)
+.+....
T Consensus 380 qaaY~~i 386 (849)
T COG3899 380 QAAYNLI 386 (849)
T ss_pred HHHhccC
Confidence 8877554
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1e-07 Score=108.63 Aligned_cols=177 Identities=28% Similarity=0.353 Sum_probs=146.8
Q ss_pred hcCceEEEcccCCCcCCCCCCCCC--CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEc
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCP--QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRA 573 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L 573 (997)
...+..+.+.++.+..++...... +|+.|++++|.+..++. .+..+++|+.|++++|.+.++|...+.+.+|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 356899999999999999877554 89999999999888752 357899999999999999999988889999999999
Q ss_pred CCCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccc
Q 038902 574 ENTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 574 ~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
++|.++.+| ....+..|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+++|+.|+++++..
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i---- 267 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQI---- 267 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccc----
Confidence 999999999 4567777999999999877888889999999999988887 4444444 78899999999987521
Q ss_pred ccCCCCCCCChHhhhCCCCCCEEEEEecccccccc
Q 038902 653 EETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSK 687 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 687 (997)
..+..++.+.+++.|+++++.....++
T Consensus 268 --------~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 --------SSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --------cccccccccCccCEEeccCccccccch
Confidence 122227888999999999987655443
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.1e-06 Score=98.45 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=118.7
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC-------------------
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA------------------- 189 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~------------------- 189 (997)
+.++++...+.+++|.+..++.|...+..+.+ ..+.++|+.|+||||+|+.+++......
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 34556667777899999999999999977655 4478999999999999999998764211
Q ss_pred CCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCC
Q 038902 190 PHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEER 266 (997)
Q Consensus 190 ~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~ 266 (997)
.|.. ++++......+.++ + +....+...- ..+++-++|+|++... ...+.+...+-...
T Consensus 86 ~~~dlieidaas~~gvd~i-r----------------~ii~~~~~~p-~~g~~kViIIDEa~~ls~~a~naLLK~LEepp 147 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEET-K----------------EILDNIQYMP-SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP 147 (546)
T ss_pred CCCceEEeecccccCHHHH-H----------------HHHHHHHhhh-hcCCcEEEEEechhhccHHHHHHHHHHHhcCC
Confidence 1111 33322221111111 1 1111111111 1247779999999765 33445544444333
Q ss_pred CceEEEEee-CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHHHH
Q 038902 267 KRCKVIVTS-RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAGAL 340 (997)
Q Consensus 267 ~gs~iivTt-r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 340 (997)
..+++|++| ....+...+.. ..+++++++.++....+.+.+....-...++....|++.++|.+ -|+..+-.++
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455566544 44444433332 78999999999988888876653333444556778999999955 5665554443
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.4e-06 Score=96.43 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=117.9
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhh--------------------hC
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDT--------------------IA 189 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~--------------------~~ 189 (997)
..+++...+.+++|.+...+.|...+..+.+. .+.++|+.|+||||+|+.++...-. ..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 34566677779999999999998888777654 7899999999999999999875421 11
Q ss_pred CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCC
Q 038902 190 PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERK 267 (997)
Q Consensus 190 ~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 267 (997)
+.|.+.++.+....+.++ +.|..... +..-.+++-++|+|++.... ..+.+...+....+
T Consensus 84 ~~Dv~eidaas~~~vddI-R~Iie~~~-----------------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDI-KVILENSC-----------------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred CCCEEEEecccCCCHHHH-HHHHHHHH-----------------hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 222344443333332222 11221110 00002366789999997653 34445444444445
Q ss_pred ceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh
Q 038902 268 RCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 268 gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl 331 (997)
.+++|++|.+ ..+...+.. ..+++.+++.++..+.+.+.+..+...-.++....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 6667666643 444443333 789999999999999998888654444455677889999998764
No 72
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.49 E-value=6.8e-07 Score=106.31 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=105.4
Q ss_pred HHhcCCCCccccccccHHHHH---HHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALN---SIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+.++.+...+.+|+|++..+. .+.+.+..+....+.++|++|+||||+|+.+++.... +|.. ++.+. ..+.+
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~--lna~~-~~i~d 92 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSS--LNAVL-AGVKD 92 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--ccee--ehhhh-hhhHH
Confidence 445556666778999988774 5667777777778899999999999999999987643 3322 11110 00110
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEe--eCCh--hh
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVT--SRRL--DV 280 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivT--tr~~--~v 280 (997)
.........+.+...+++.+||+||++.. ...+.+... ...|+.++|+ |.+. .+
T Consensus 93 -----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~---lE~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 -----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTITLIGATTENPYFEV 152 (725)
T ss_pred -----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH---hcCceEEEEEecCCChHhhh
Confidence 01111122222222246789999999764 334444322 2335555553 3332 12
Q ss_pred hhcCC--CeeEEcCCCCHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHHhCCch
Q 038902 281 CSKMS--DVTVQIEELGEEDRLKLFKQIAR-------LPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 281 ~~~~~--~~~~~l~~L~~~~~~~lf~~~~~-------~~~~~~~~~~~~~i~~~~~glP 330 (997)
..... ...+.+++++.++...++++.+. .....-.++....|++.+.|..
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 22222 26799999999999999987663 1122233556678888888853
No 73
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.1e-06 Score=96.65 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=121.3
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEE-EccCCCHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVI-VAESSDLRR 206 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~-v~~~~~~~~ 206 (997)
+.++++...+.+++|.+...+.|..++..+.+. .+.++|+.|+||||+|+.+++........+. .|.. +...+..=.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 456677777889999999999999999877665 4889999999999999999988754221111 1110 001111111
Q ss_pred HHHHHHHHhCCC-----CchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEee-
Q 038902 207 IQDKIAELLKFK-----IEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTS- 275 (997)
Q Consensus 207 ~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt- 275 (997)
..+.+......+ .......+.+..+.+.+.. .+++-++|+|++... ..++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 111111110000 0000001111223333321 235668899999765 34555555554444566666555
Q ss_pred CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHH
Q 038902 276 RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIV 336 (997)
Q Consensus 276 r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 336 (997)
+...+...... ..+++.++++++..+.+...+......-..+.+..|++.++|.+- |+..+
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43444433332 678999999999988888776433333445678889999999764 44433
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=2.2e-06 Score=94.58 Aligned_cols=182 Identities=11% Similarity=0.132 Sum_probs=110.7
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE--ccCCCHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV--AESSDLRRIQDK 210 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v--~~~~~~~~~~~~ 210 (997)
.++...+.+++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+++..... .+...++.+ +....... ..+
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~-~~~ 87 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGIDV-IRN 87 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchHH-HHH
Confidence 34555566899999999999999987777778999999999999999999886432 222223333 22211111 111
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh-hhhhcCCC
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD 286 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~ 286 (997)
.+..+. ....- ...+-++++|+++... ....+...+......+++|+++... .+......
T Consensus 88 ~i~~~~----------------~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 88 KIKEFA----------------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHH----------------hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 111110 00000 0246689999986542 2233333333333456777776432 22221111
Q ss_pred --eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 287 --VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 287 --~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
..++++++++++....+++.+......-.++....+++.++|.+--
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 5789999999999888888775333233355778889999997654
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=5.3e-07 Score=93.24 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=66.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC--CCHHHHHHHH-----HHHhCCCCchh-hHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES--SDLRRIQDKI-----AELLKFKIEEE-DELQRRA 229 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~ 229 (997)
..-..++|+|++|+|||||++.+++..... +|+. +|+.+... +++.++++++ +..++.+.... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999998765 8999 89998776 7999999999 44444321111 1111222
Q ss_pred HHHHHHHhcCCcEEEEEcccccc
Q 038902 230 TLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 230 ~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...+++.+.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 22333334589999999999765
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.44 E-value=6.2e-06 Score=92.43 Aligned_cols=188 Identities=14% Similarity=0.192 Sum_probs=114.7
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC--------------------C
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA--------------------P 190 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~ 190 (997)
++++.....+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++....... +
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 85 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSS 85 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 334455566889999999999999977654 4678899999999999999998864211 2
Q ss_pred CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCc
Q 038902 191 HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKR 268 (997)
Q Consensus 191 f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 268 (997)
++.++++-........ .+++...+... -. .+++-++|+|+++.. ...+.+...+......
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~---------------p~--~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 86 LDVIEIDAASNNGVDD-IREILDNVKYA---------------PS--SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred CCEEEeeccccCCHHH-HHHHHHHHhcC---------------cc--cCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 2323332221111111 11122111100 00 135568889998654 3344444444333446
Q ss_pred eEEEEeeCChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 269 CKVIVTSRRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 269 s~iivTtr~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
+.+|++|.+.. +...+.. ..+++.++++++..+.+..++....-.-.++.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 67777775543 3332222 688999999999988888766432222234678889999999886554443
No 77
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=5.9e-07 Score=83.73 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
-+++.|.|+.|+||||++++++++.. .-.. ++++..+....... .....+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~~~~~~~~~~~~-- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPDLLEYFLELIKP-- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhhhHHHHHHhhcc--
Confidence 36899999999999999999998875 1233 66665433211000 00011222223222
Q ss_pred CcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhc-----CCC--eeEEcCCCCHHHH
Q 038902 240 KKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSK-----MSD--VTVQIEELGEEDR 299 (997)
Q Consensus 240 k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-----~~~--~~~~l~~L~~~~~ 299 (997)
++.+|++|++....+|......+.+..+..+|++|+.+...... ... ..+++.||+-.|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78899999999998888766666555566799999987765532 222 6789999988773
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.4e-06 Score=98.00 Aligned_cols=201 Identities=13% Similarity=0.172 Sum_probs=115.0
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|.+..++.|..++..+.+ ..+.++|+.|+||||+|+.+++..-.......--++ ...++.-...+
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-~~pCg~C~~C~ 85 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-ATPCGVCQACR 85 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-CCCCCccHHHH
Confidence 4456667777899999999999999987766 456899999999999999998876431110000000 00111111112
Q ss_pred HHHHHhCCC---Cc---hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC-
Q 038902 210 KIAELLKFK---IE---EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR- 277 (997)
Q Consensus 210 ~i~~~l~~~---~~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~- 277 (997)
.|...-..+ .+ ....++ ...+.+.... .++.-++|+|+|+.. ..++.+...+.......++|++|.+
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHcCCCCceeecCcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 221100000 00 001111 1112222211 245668999999876 3344454444333345566655543
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai 333 (997)
..+...... ..+++++++.++..+.+.+.+....-.-..+....|++.++|.+--+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 333332222 78999999999999999887754333334557788999999966433
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.1e-06 Score=82.66 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=74.1
Q ss_pred cccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchh
Q 038902 143 THSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE 222 (997)
Q Consensus 143 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (997)
.|++..++.+...+.....+.+.|+|++|+||||+|+++++..... ....+++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 4788889999988877667899999999999999999999987531 2333666655443322221111100
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEcccccc-----ccccccccccCC---CCCceEEEEeeCChh
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGE---ERKRCKVIVTSRRLD 279 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~-----~~~~~l~~~~~~---~~~gs~iivTtr~~~ 279 (997)
............++.+||+||++.. ..+......... ...+.+||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111111247899999999853 222222122211 135778888888653
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.41 E-value=7.4e-07 Score=95.59 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=66.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC--CHHHHHHHHHHHhCCC-CchhhH-----HHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS--DLRRIQDKIAELLKFK-IEEEDE-----LQRRAT 230 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~--~~~~~~~~i~~~l~~~-~~~~~~-----~~~~~~ 230 (997)
.-+..+|+|++|+||||||+.+|+..... +|+. +||.+.+.+ ++.+++++|...+-.. .+.... ....-.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999998775 8999 999999887 8888888887432111 111111 122223
Q ss_pred HHHHHHhcCCcEEEEEcccccc
Q 038902 231 LAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 231 l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..+++...+++++|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 3444445689999999998654
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.2e-08 Score=97.62 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=80.9
Q ss_pred HHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeeecccc
Q 038902 728 WVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEEN 806 (997)
Q Consensus 728 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 806 (997)
.+...+.+|+.|.|.|.. +.+--...+.+-.+|+.|+|+.|. ++...-...+.++..|.+|+|+.|...++....
T Consensus 204 ~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--- 279 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--- 279 (419)
T ss_pred HHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---
Confidence 344446677777774443 222112234444667777777777 665544445667777777777777655443210
Q ss_pred chhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcch
Q 038902 807 EIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRL 882 (997)
Q Consensus 807 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 882 (997)
.-..--++|+.|++++|..--.......-...+|+|.+|++++|..|++- ....+..++.|++|.++.|..+
T Consensus 280 ---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 280 ---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCC
Confidence 11233457777777775422111111111235677777777777666652 2334455666777777777644
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=4.8e-06 Score=97.00 Aligned_cols=204 Identities=13% Similarity=0.147 Sum_probs=118.9
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+.++++...+.+++|.+..++.|...+..+.+.. +.++|+.|+||||+|+.+++..-....+. ...+..-...
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~------~~pCg~C~~C 79 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT------ATPCGECDNC 79 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC------CCCCCCCHHH
Confidence 3445666777799999999999999998776644 57999999999999999998764421100 0001111111
Q ss_pred HHHHHHhCC-----CCc-hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCC
Q 038902 209 DKIAELLKF-----KIE-EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 209 ~~i~~~l~~-----~~~-~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
+.|...-.. +.. ....+. ...+.+.+.. .+++-++|+|+++... ..+.+...+-......++|++|.+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 111110000 000 001111 1122222221 3577799999998763 344444444333345555555544
Q ss_pred -hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHHHH
Q 038902 278 -LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAGAL 340 (997)
Q Consensus 278 -~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l 340 (997)
..+...+.. ..|++++++.++....+.+.+........++....|++.++|.+- |+..+-.++
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqai 225 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAI 225 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444333222 789999999999999998876433333344567889999999665 444443433
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=4.3e-06 Score=96.76 Aligned_cols=189 Identities=14% Similarity=0.181 Sum_probs=116.1
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCC-------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAP------------------- 190 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~------------------- 190 (997)
.++++...+.+++|++..+..|..++..+.+. .+.++|+.|+||||+|+.+++.+-....
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR 86 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC
Confidence 44566777779999999999999999877654 6799999999999999999987532111
Q ss_pred -CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH---hcCCcEEEEEcccccccc--ccccccccCC
Q 038902 191 -HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLR---ERTKKVLIILDDVREKIN--LAVSGIPYGE 264 (997)
Q Consensus 191 -f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~~k~~LlvlDdv~~~~~--~~~l~~~~~~ 264 (997)
.+.+.++......+ +. ...+.+... ..+++-++|+|++..... .+.+...+..
T Consensus 87 ~~DvlEidaAs~~gV--------------------d~-IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE 145 (709)
T PRK08691 87 YVDLLEIDAASNTGI--------------------DN-IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE 145 (709)
T ss_pred ccceEEEeccccCCH--------------------HH-HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh
Confidence 11122221111111 11 111111111 124677899999976532 3334333332
Q ss_pred CCCceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHHHH
Q 038902 265 ERKRCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAGAL 340 (997)
Q Consensus 265 ~~~gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l 340 (997)
.....++|++|.+. .+...... ..+++.+++.++....+.+.+....-.-..+....|++.++|.+- |+..+-.++
T Consensus 146 Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23456677766543 23222212 678889999999999998877644434445677889999999774 444443333
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=4.9e-06 Score=95.39 Aligned_cols=201 Identities=13% Similarity=0.154 Sum_probs=115.2
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|++..++.+.+++..+.+ +.+.++|+.|+||||+|+.+++...... |.... .++.-...+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~~-~Cg~C~sCr 80 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDGD-CCNSCSVCE 80 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCC-CCcccHHHH
Confidence 4556777777999999999999999876654 4688999999999999999998864321 11110 111111111
Q ss_pred HHHHHhCCCC---ch---hhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEee-CC
Q 038902 210 KIAELLKFKI---EE---EDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTS-RR 277 (997)
Q Consensus 210 ~i~~~l~~~~---~~---~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~ 277 (997)
.+......+. +. ...+ ..+.+.+.... .+++-++|+|+++.. ..++.+...+........+|++| ..
T Consensus 81 ~i~~~~h~DiieIdaas~igVd-~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVD-EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHcCCCCceEEeccccccCHH-HHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1111110000 00 0001 11111111111 124446999999764 33445544443333455565555 43
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAG 338 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 338 (997)
..+...... ..+++.+++.++....+.+.+......-..+.+..+++.++|.+ .|+..+-.
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 334332222 68999999999999888887653332233456788999999955 45555444
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.2e-06 Score=94.56 Aligned_cols=204 Identities=10% Similarity=0.156 Sum_probs=120.5
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++..-.....+. ..++.=...+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~------~pCg~C~sC~ 80 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG------EPCNTCEQCR 80 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC------CCCcccHHHH
Confidence 445666677789999999999998887765 467788999999999999999988643211000 0001101111
Q ss_pred HHHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC-
Q 038902 210 KIAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR- 277 (997)
Q Consensus 210 ~i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~- 277 (997)
.|......+. + .... +....+.+.+.. .+++-+||+|+++.. ...+.+...+........+|++|.+
T Consensus 81 ~i~~g~hpDv~eId~a~~~~I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASNRGI-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHhcCCCCceEEEecccccCH-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 1111100000 0 0000 111122222221 246779999999765 3344454444322335566665554
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHHHHHc
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVAGALR 341 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~~l~ 341 (997)
..+...+.. ..+++++++.++..+.+.+.+......-..+.+..|++.++|. --|+..+...+.
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444433222 6789999999999998888765433333455788899999995 578877766553
No 86
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=2e-06 Score=86.47 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 141 DLTHSSKALNSIMKLLK---DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
.|+||+++++++...+. ....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 3457899999999999999999999998876
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=90.44 Aligned_cols=190 Identities=14% Similarity=0.200 Sum_probs=113.5
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhh------CCCce--EEEEEcc
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTI------APHDK--AHVIVAE 200 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~--~wv~v~~ 200 (997)
++++++...+.+++|.+...+.+.+++..+.. +.+.++|+.|+||||+|+.+++..... ..|.. +-++...
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc
Confidence 35566777777899999999999999977654 578899999999999999998876431 11222 2121111
Q ss_pred CCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeC-C
Q 038902 201 SSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSR-R 277 (997)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr-~ 277 (997)
..+..++ .+++.++.. ....+++-++++|++.... .++.+...+......+.+|++|. .
T Consensus 87 ~~~~~~i-~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 87 NNSVDDI-RNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred CCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 1111111 122221110 0001355689999987542 24444333322233455665553 3
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVA 337 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 337 (997)
..+...... ..++++++++++....+...+....-.-..+....+++.++|.+- |+..+-
T Consensus 149 ~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 333322221 678999999999998888766533322334677888889998654 444433
No 88
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.5e-06 Score=94.77 Aligned_cols=207 Identities=14% Similarity=0.148 Sum_probs=117.7
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEE-EccCCCHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVI-VAESSDLRR 206 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~-v~~~~~~~~ 206 (997)
+.++++...+.+++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++..-.....+. .|.. +...+..=.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 345567777779999999999999999877664 4889999999999999999988754222211 1110 001111111
Q ss_pred HHHHHHHHhCCCC---c--h-hhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEee
Q 038902 207 IQDKIAELLKFKI---E--E-EDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTS 275 (997)
Q Consensus 207 ~~~~i~~~l~~~~---~--~-~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 275 (997)
..+.+...-..+. + . ...++ +..+.+.+.. .+++-++|+|+++... ..+.+...+..-...+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 1111111100000 0 0 00111 1122222211 2356678999987653 3444544443333455555555
Q ss_pred -CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHH
Q 038902 276 -RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVA 337 (997)
Q Consensus 276 -r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 337 (997)
+...+...+.. ..+++.+++.++....+.+.+....-.-..+.+..|++.++|.. .|+..+-
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444443332 78999999999988888776643332334557788999999944 4544443
No 89
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.1e-05 Score=88.14 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=110.3
Q ss_pred cccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhh----hCCCce-EEEEE-ccCCCHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDT----IAPHDK-AHVIV-AESSDLRRIQDKIAE 213 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~-~wv~v-~~~~~~~~~~~~i~~ 213 (997)
+++|.+...+.+..++..+.. ....++|+.|+||||+|+.+++..-. ..+.|. .|... .....+.++ +++..
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 578999999999999977665 56689999999999999999987532 234555 34321 222233332 22222
Q ss_pred HhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccc--ccccccccccccCCCCCceEEEEeeCChh-hhhcCCC--ee
Q 038902 214 LLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVR--EKINLAVSGIPYGEERKRCKVIVTSRRLD-VCSKMSD--VT 288 (997)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~--~~ 288 (997)
.+.... . .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+ +...... ..
T Consensus 84 ~~~~~p---------------~--~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 84 EVNKKP---------------Y--EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHhcCc---------------c--cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 221110 0 1245555666654 44557777666665567888888887654 2222222 78
Q ss_pred EEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 289 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 289 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
+++.++++++....+.+..... ..+.+..++..++|.|.-+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999988887665311 123466788899998865543
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=7.1e-06 Score=85.08 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhh
Q 038902 144 HSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEED 223 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 223 (997)
|-...+..+.....+.....+.|+|+.|+|||+|++++++..... .....++.+.+ ....+.
T Consensus 24 ~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~~------~~~~~~----------- 85 (233)
T PRK08727 24 APDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQA------AAGRLR----------- 85 (233)
T ss_pred CcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHHH------hhhhHH-----------
Confidence 444444444444333334579999999999999999999987653 23336665322 111111
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccccccc---cccc-cccccCC-CCCceEEEEeeCCh---------hhhhcCCC-ee
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREKI---NLAV-SGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VT 288 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~ 288 (997)
...+.+. +.-+||+||+.... .|.. +...+.. ..+|..||+|++.. ++..++.. ..
T Consensus 86 ------~~~~~l~---~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 86 ------DALEALE---GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred ------HHHHHHh---cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 1122333 45689999997542 2321 2111111 12355699999843 23334433 58
Q ss_pred EEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH
Q 038902 289 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 289 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai 333 (997)
+++++++.++-.+++++++....-.-.++...-|++.+.|-.-.+
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 899999999999999987753333344557778888888754433
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=9.3e-06 Score=97.99 Aligned_cols=189 Identities=13% Similarity=0.179 Sum_probs=118.6
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhhC--------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIA-------------------- 189 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~-------------------- 189 (997)
.++++-..+.+++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+++.+-...
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 455667777799999999999999998877654 78999999999999999998874311
Q ss_pred --CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--cccccccccc
Q 038902 190 --PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPY 262 (997)
Q Consensus 190 --~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~ 262 (997)
+++.++++-.....+.++ ..+++.+.. .++.-++|||+++.. ...+.|...+
T Consensus 86 ~~~~dv~eidaas~~~Vd~i---------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~L 144 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDA---------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIV 144 (824)
T ss_pred CCCCcEEEecccccCCHHHH---------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 111222221111111111 111111111 235567889999876 3344554555
Q ss_pred CCCCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHH
Q 038902 263 GEERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAG 338 (997)
Q Consensus 263 ~~~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 338 (997)
..-...+.+|++|.+ ..+...+.. ..|++..++.++..+.+.+.+..+.-.-..+....|++.++|.+ .++..+-.
T Consensus 145 EEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 145 EEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444456666655543 445444443 78999999999998888877643333333456678899999977 34444434
Q ss_pred HH
Q 038902 339 AL 340 (997)
Q Consensus 339 ~l 340 (997)
++
T Consensus 225 Li 226 (824)
T PRK07764 225 LL 226 (824)
T ss_pred HH
Confidence 33
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.7e-08 Score=97.87 Aligned_cols=188 Identities=18% Similarity=0.143 Sum_probs=109.1
Q ss_pred ccccceecCCCCCCcccc-cccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhh
Q 038902 734 EKTEDLTLTRSRDLEDIG-AIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQ 812 (997)
Q Consensus 734 ~~L~~L~L~~~~~l~~~~-~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 812 (997)
+.|++|+|+. ..++.-. ...+..|..|+.|.|.++.+.+.+-. .+..-.+|+.|+|+.|..+++.. ...-.
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~------~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENA------LQLLL 256 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhH------HHHHH
Confidence 4588888843 2222111 12344577899999998887665332 24456788888888888765431 11234
Q ss_pred ccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCcc-CChHHHHhhcCCceEeecCCcchhhhhcCCCC
Q 038902 813 AGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNI-FSKTLALKLGKLEQLSFQKCDRLEEIVSSDEP 891 (997)
Q Consensus 813 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 891 (997)
.++..|..|+++.|.-.+..... ...+--++|..|++++|.+--.. -.......+|+|.+|++++|..++.-...
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv-~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~--- 332 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTV-AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--- 332 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhH-HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---
Confidence 67778888888877644443211 11123467888888887532111 11223456777888888887776641110
Q ss_pred CCcccccccCCCCCCcCCCccEEEEccccccccccchh--HHhhhcccceEEeeccccc
Q 038902 892 EEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLT--IVKGLKELKELNIVGCNEM 948 (997)
Q Consensus 892 ~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~--~~~~l~~L~~L~i~~C~~L 948 (997)
. ...|+.|+.|+++.|-.+. |.. .+...|+|.+|++.+|-.-
T Consensus 333 ---------~---~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 333 ---------E---FFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ---------H---HHhcchheeeehhhhcCCC---hHHeeeeccCcceEEEEeccccCc
Confidence 0 1236777788887776321 111 1345577777777777543
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.2e-05 Score=87.99 Aligned_cols=193 Identities=13% Similarity=0.192 Sum_probs=114.3
Q ss_pred cccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCC--CceEEEEEccCCCHHHHHHHHHHH---
Q 038902 141 DLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAP--HDKAHVIVAESSDLRRIQDKIAEL--- 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~wv~v~~~~~~~~~~~~i~~~--- 214 (997)
.++|.+...+.+...+..+.. ..+.|+|+.|+||||+|+.+++..-.... +... .....+..-...+.|...
T Consensus 24 ~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~--~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE--TLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc--ccCCCCCCCHHHHHHHcCCCC
Confidence 789999999999999987764 45889999999999999999988754211 1110 001111111223333222
Q ss_pred ----hCCCCchh-----h--HHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceE-EEEeeCC
Q 038902 215 ----LKFKIEEE-----D--ELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCK-VIVTSRR 277 (997)
Q Consensus 215 ----l~~~~~~~-----~--~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~-iivTtr~ 277 (997)
+..+.+.. . ..+.+..+.+++.. .+++-++|+|+++... ..+.+...+........ |++|++.
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 10000000 0 01223345555554 4577799999998753 23334333322223344 4555444
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
..+...... ..+.+.+++.++..+++.+.....+ -.++....+++.++|.|.....+.
T Consensus 182 ~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 182 GRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred hhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333333 7999999999999999987432221 224457789999999998665443
No 94
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=3.5e-07 Score=94.29 Aligned_cols=235 Identities=17% Similarity=0.121 Sum_probs=131.2
Q ss_pred CCCCccEEEccCCCCCC----CChhHhhcCccccEEEecCcccC----CCCc-------cccccccCCEEEcCCCCcc--
Q 038902 517 MCPQLLTLFLQHNAFDK----IPPGFFEHMREINFLDLSYTNIS----TLPG-------SIECLVKLRSLRAENTHLE-- 579 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~----~lp~-------~l~~l~~L~~L~L~~~~l~-- 579 (997)
....++.|++++|.+.. .....+.+.++|+..++++..-. ++|+ .+-.+++|++|+|++|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 44556666677666432 22233455667777777765322 3343 2344667888888887544
Q ss_pred CCC----cccccCcccEEEecCCccccc--------------CccccCCCCCcEEeccCCccCCCCCh----HHhhcCCC
Q 038902 580 KAP----LKKEFKELVILILRGSSIREL--------------PKGLERWINLKLLDLSNNIFLQGIPP----NIISKLCQ 637 (997)
Q Consensus 580 ~lp----~~~~l~~L~~L~L~~~~l~~l--------------p~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~ 637 (997)
.++ .+..+..|++|.|.+|++... ..-+.+-++|+.+...+|. +...+. ..+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccc
Confidence 222 455677788888877766522 1123345678888888876 444442 22456678
Q ss_pred CcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccc----cccCCCCCCccEEEEEecCcccccccc
Q 038902 638 LEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLS----KQFDGPWGNLKRFRVQVNDDYWEIAST 713 (997)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~L 713 (997)
|+++.+..+..... ........+..+++|+.|++..|.+..-. ......|++|+.|++.+|...
T Consensus 187 leevr~~qN~I~~e------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~------ 254 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPE------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE------ 254 (382)
T ss_pred cceEEEecccccCc------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc------
Confidence 88888765432111 11234456788888888888887643321 223344667777777766541
Q ss_pred ceEEeecCc-ccchHHHHHhhccccceecCCCCCCcccc----cccccCCCCccEEEEeccCC
Q 038902 714 RSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIG----AIEVQGLTALMTMHLRACSL 771 (997)
Q Consensus 714 ~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~----~~~~~~l~~L~~L~L~~~~l 771 (997)
... ..+-..+....++|+.|.+.++. ++.-. ...+...|.|..|+|++|.+
T Consensus 255 ------~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 ------NEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ------cccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111 12223333334566666663332 22111 11233467888888888886
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.4e-06 Score=93.77 Aligned_cols=187 Identities=12% Similarity=0.148 Sum_probs=115.3
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhhCCC------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIAPH------------------ 191 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~~f------------------ 191 (997)
.++++...+.+++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+++..-....+
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 455677777799999999999999998776654 6899999999999999999876432111
Q ss_pred -ce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCC
Q 038902 192 -DK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGE 264 (997)
Q Consensus 192 -~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~ 264 (997)
.. +.++.+....+.++ ..+.+.+.. .++.-++|+|+|+.. ...+.+...+..
T Consensus 87 ~~d~~eidaas~~~v~~i---------------------R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDT---------------------RELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred CceEEEEcccccCCHHHH---------------------HHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 11 22222111111111 111111111 246678999999875 334444444433
Q ss_pred CCCceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHH
Q 038902 265 ERKRCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAG 338 (997)
Q Consensus 265 ~~~gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~ 338 (997)
....+++|++|.+. .+...+.. ..+++++++.++....+.+.+....-.-.++....|++.++|.+- |+..+-.
T Consensus 146 pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq 223 (509)
T PRK14958 146 PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQ 223 (509)
T ss_pred cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34456676665543 33322222 678999999999888777766533333334566788899999764 4443433
No 96
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-05 Score=91.16 Aligned_cols=186 Identities=11% Similarity=0.118 Sum_probs=115.4
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhh--------------------C
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTI--------------------A 189 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~--------------------~ 189 (997)
.++++...+.+++|.+...+.|..++..+... ...++|+.|+||||+|+.+++..-.. .
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 45567777789999999999999999877665 55899999999999999999876321 1
Q ss_pred CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCC
Q 038902 190 PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERK 267 (997)
Q Consensus 190 ~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 267 (997)
+++.+.++.+....+.++.. ++.... +....+++-++|+|++.... ..+++...+-...+
T Consensus 85 h~dv~eldaas~~gId~IRe-lie~~~-----------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRE-LIEQTK-----------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred CCeEEEeccccccCHHHHHH-HHHHHh-----------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 12222222111111211111 111100 00001356688999997652 34444444433345
Q ss_pred ceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 268 RCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 268 gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
.+++|++|.+. .+...... ..+++.+++.++....+.+.+....-.-.++.+..|++.++|.+--+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 66777777653 22222222 789999999999999888777533333345678889999999874443
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.4e-05 Score=92.80 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=118.5
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhhCC-------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIAP------------------- 190 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~~------------------- 190 (997)
.++++...+.+++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+++.......
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 345666777799999999999999998877655 689999999999999999987643111
Q ss_pred ---CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--cccccccccc
Q 038902 191 ---HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPY 262 (997)
Q Consensus 191 ---f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~ 262 (997)
.+.+.++.+....+.+ ...+.+.+.. .+++-++|+|++... ...+.+...+
T Consensus 84 ~~~~dvieidaas~~gvd~---------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~L 142 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDD---------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIV 142 (584)
T ss_pred CCCceEEEeccccccCHHH---------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHH
Confidence 1112222111111111 1112222111 236668899998765 3344444444
Q ss_pred CCCCCceEEEEee-CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHH
Q 038902 263 GEERKRCKVIVTS-RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAG 338 (997)
Q Consensus 263 ~~~~~gs~iivTt-r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 338 (997)
........+|++| ....+...+.. ..+++..++.++..+.+.+.+......-..+....|++.++|.+ -|+..+-.
T Consensus 143 EEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 143 EEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4334455555555 44444443332 78999999999998888877653333334456788899999966 56666555
Q ss_pred HHc
Q 038902 339 ALR 341 (997)
Q Consensus 339 ~l~ 341 (997)
.+.
T Consensus 223 l~~ 225 (584)
T PRK14952 223 LLA 225 (584)
T ss_pred HHh
Confidence 443
No 98
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=1e-06 Score=93.91 Aligned_cols=291 Identities=17% Similarity=0.183 Sum_probs=180.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-E-EEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-A-HVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE 237 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~-wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (997)
..|-+.++|.|||||||++-.+.. .+. .|.. . .+....--+...+.-.....++.... +.+.....+..++.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--PGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccc--cchHHHHHHHHHHhh
Confidence 358899999999999999999998 555 5666 4 44555555666666666777776532 112234455667776
Q ss_pred cCCcEEEEEcccccccc-ccccccccCCCCCceEEEEeeCChhhhhcCCCeeEEcCCCCHH-HHHHHHHHHcCC--C---
Q 038902 238 RTKKVLIILDDVREKIN-LAVSGIPYGEERKRCKVIVTSRRLDVCSKMSDVTVQIEELGEE-DRLKLFKQIARL--P--- 310 (997)
Q Consensus 238 ~~k~~LlvlDdv~~~~~-~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~--~--- 310 (997)
+|.++|+||..+..+ -..+...+..+.+.-.|+.|+|..-... +...+.++.|+.. ++.++|...+.. .
T Consensus 88 --rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 --RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred --hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 999999999866522 1222223334455567888888763221 1256777777766 788898776641 1
Q ss_pred CChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccc
Q 038902 311 DSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNEL 390 (997)
Q Consensus 311 ~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 390 (997)
-..........|.++.+|.|++|...++..+.-...+..+...+.|.. +... ......-.......+.+||.-|
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~l-----l~~~-~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRL-----LTGG-ARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHH-----Hhcc-cccchhHHHhccchhhhhhHhh
Confidence 133445678899999999999999999999877664433333344432 2222 1111111245688899999999
Q ss_pred hhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHHhcccccccc--CCCeEEecchhHH
Q 038902 391 KMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSIVEDLRNRKILSYRE--GEGTYRIHDNTRI 468 (997)
Q Consensus 391 ~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~mHdli~~ 468 (997)
....+.-|.-++.|...+.-.. ..|.+.|--.. .+.+..+ ..+..+++.+++.-.+ ..-.|+.-+..|.
T Consensus 238 tgwe~~~~~rLa~~~g~f~~~l----~~~~a~g~~~~----~~~y~~~-~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 238 TGWERALFGRLAVFVGGFDLGL----ALAVAAGADVD----VPRYLVL-LALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred hhHHHHHhcchhhhhhhhcccH----HHHHhcCCccc----cchHHHH-HHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999998554432 23333332110 1122222 2466778888774322 2223555555555
Q ss_pred HHHHhh
Q 038902 469 VVKYFA 474 (997)
Q Consensus 469 ~~~~~~ 474 (997)
++...-
T Consensus 309 YalaeL 314 (414)
T COG3903 309 YALAEL 314 (414)
T ss_pred HHHHHH
Confidence 555443
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.5e-05 Score=93.73 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=117.9
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhh---------------------hC
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDT---------------------IA 189 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~---------------------~~ 189 (997)
++++...+.+++|.+...+.|..++..+.+. .+.++|+.|+||||+|+.++...-. ..
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCC
Confidence 4456667778999999999999999877665 4789999999999999999987632 12
Q ss_pred CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCC
Q 038902 190 PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERK 267 (997)
Q Consensus 190 ~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 267 (997)
+|+...++......+.++.. ++.++... ...+++=++|+|++.... .++.+...+.....
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~-li~~~~~~-----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRN-LIEQVRIP-----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred CCceEEecccccCCHHHHHH-HHHHHhhC-----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 34443333332222222221 11211100 001355688999987653 34555444443344
Q ss_pred ceEEEEee-CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHH
Q 038902 268 RCKVIVTS-RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIV 336 (997)
Q Consensus 268 gs~iivTt-r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 336 (997)
.+.+|++| +...+...+.. ..+++.++++++....+.+.+....-.-..+.+..|++.++|..- |+..+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56666555 44555544333 789999999999999888876533333334567889999999654 44433
No 100
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3.5e-06 Score=92.66 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=112.0
Q ss_pred ccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EE---EEEccCCCHHHHHHHHHHH
Q 038902 140 SDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AH---VIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~w---v~v~~~~~~~~~~~~i~~~ 214 (997)
.+++|.+...+.|.+.+..+.+. .+.++|+.|+||+|+|..+++..-....... .. ...-.....-...+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 37899999999999999877655 5889999999999999999988643221110 00 0000000000111111111
Q ss_pred hCCC-------Cchhh----H---HHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEee
Q 038902 215 LKFK-------IEEED----E---LQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTS 275 (997)
Q Consensus 215 l~~~-------~~~~~----~---~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 275 (997)
-..+ .++.. . -+.+..+.+.+.. .+++-++|+|+++... ..+.+...+.....++.+|++|
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t 178 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVS 178 (365)
T ss_pred CCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 0000 00000 0 1123333333332 3567799999997653 3344444443333456677777
Q ss_pred CCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 276 RRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 276 r~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
.+. .+...... ..+.+.+++.++..+.+.+....... +....++..++|.|.....+.
T Consensus 179 ~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~----~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 179 HAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPD----DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCH----HHHHHHHHHcCCCHHHHHHHh
Confidence 655 34333333 79999999999999999876532221 122678999999998665543
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=6.2e-07 Score=71.06 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=34.4
Q ss_pred CCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCC
Q 038902 519 PQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTH 577 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~ 577 (997)
|+|++|++++|.+..+++..|.++++|++|++++|.++.+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566666666666666556666666666666666665553 345555556655555554
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.4e-05 Score=92.56 Aligned_cols=189 Identities=14% Similarity=0.205 Sum_probs=116.1
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCC-------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAP------------------- 190 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~------------------- 190 (997)
.++++...+.+++|.+..++.+..++..+.+. .+.++|+.|+||||+|+.+++.......
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 44456666778999999999999999877665 4689999999999999999987643110
Q ss_pred Cce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccccc--ccccccccCC
Q 038902 191 HDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKIN--LAVSGIPYGE 264 (997)
Q Consensus 191 f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~~--~~~l~~~~~~ 264 (997)
|.. ++++.+....+.++ ++++ +.... .+++-++|+|+++.... .+.+...+..
T Consensus 87 ~~d~~ei~~~~~~~vd~i-r~l~--------------------~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe 145 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAM-RELL--------------------DNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE 145 (527)
T ss_pred CCceeEeeccccCCHHHH-HHHH--------------------HHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC
Confidence 111 22222111111111 1111 11111 24677999999976532 4444444433
Q ss_pred CCCceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHHHH
Q 038902 265 ERKRCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAGAL 340 (997)
Q Consensus 265 ~~~gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 340 (997)
....+.+|++|.+. .+...+.. ..+++++++.++..+.+.+.+..+.-...++....|++.++|.+ -|+..+-.++
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33456666655443 33322222 68999999999999888877643333334456788999999966 4555544443
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.4e-05 Score=88.96 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=115.0
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC--------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA-------------------- 189 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------- 189 (997)
.++++...+.+++|.+..++.+.+++..+.+ ..+.++|+.|+||||+|+.+++..-...
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 4556667777999999999999999987765 5678999999999999999998764321
Q ss_pred -CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccC
Q 038902 190 -PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYG 263 (997)
Q Consensus 190 -~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~ 263 (997)
+++.+++.-.......++ ..+.+.+.- .+++-++|+|+++... ..+.+...+.
T Consensus 88 ~~~d~~~i~g~~~~gid~i---------------------r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE 146 (451)
T PRK06305 88 TSLDVLEIDGASHRGIEDI---------------------RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE 146 (451)
T ss_pred CCCceEEeeccccCCHHHH---------------------HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh
Confidence 112122211111111111 111111111 1367788999987552 2334433343
Q ss_pred CCCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHH
Q 038902 264 EERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAG 338 (997)
Q Consensus 264 ~~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 338 (997)
.......+|++|.+ ..+...+.. ..+++.++++++....+.+.+....-.-.++.+..|++.++|.+ .|+..+-.
T Consensus 147 ep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 147 EPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred cCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33345566666643 333333222 68999999999998888877643332334557788999999965 45554443
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.24 E-value=1.5e-05 Score=82.82 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHH
Q 038902 146 SKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDEL 225 (997)
Q Consensus 146 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (997)
...+..+.++......+.+.|+|+.|+|||+|++.+++..... .....++.+.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh----------------------
Confidence 4455555555555556789999999999999999999987642 22225665532100
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc---ccccc-cccccCC-CCCc-eEEEEeeCCh---------hhhhcCCC-eeE
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK---INLAV-SGIPYGE-ERKR-CKVIVTSRRL---------DVCSKMSD-VTV 289 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~g-s~iivTtr~~---------~v~~~~~~-~~~ 289 (997)
....+.+.+. +--+|++||+... ..|+. +...+.. ...| .++|+||+.. ++..++.. .++
T Consensus 87 -~~~~~~~~~~---~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME---QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh---hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0011222333 2247889999664 33432 2111211 1123 3688998754 33445554 789
Q ss_pred EcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 290 QIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 290 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
+++++++++-.+++++++....-.--+++..-|++.+.|..-++.
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHH
Confidence 999999999999988766432233345677888888887654443
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.2e-05 Score=91.27 Aligned_cols=182 Identities=12% Similarity=0.158 Sum_probs=114.1
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhC--------------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIA-------------------- 189 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------- 189 (997)
..+++...+.+++|.+...+.|..++..+... .+.++|+.|+||||+|+.+++..-...
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCC
Confidence 45566777779999999999999999876654 578999999999999999998864311
Q ss_pred CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCC
Q 038902 190 PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGE 264 (997)
Q Consensus 190 ~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~ 264 (997)
+++.++++......+.++ ..+.+.+.. .+++-++|+|++.... .++.+...+..
T Consensus 87 ~~dv~~idgas~~~vddI---------------------r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe 145 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDV---------------------RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE 145 (563)
T ss_pred CCCeEEecCcccCCHHHH---------------------HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc
Confidence 122222211111111111 111111111 2466689999997653 34555444443
Q ss_pred CCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH
Q 038902 265 ERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 265 ~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai 333 (997)
......+|++|.+ ..+...+.. ..+++.+++.++..+.+.+.+....-.-.++.+..|++.++|.+-.+
T Consensus 146 pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 146 PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 3445666666543 334333222 67899999999998888877643333334567788999999976433
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.5e-05 Score=91.57 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=113.6
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCC-Cce-EE-EE---EccCCC
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDK-AH-VI---VAESSD 203 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~-~w-v~---v~~~~~ 203 (997)
..+++...+.+++|.+...+.|..++..+.+. ...++|+.|+||||+|+.+++..-.... ..+ .. .| ....++
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D 88 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD 88 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc
Confidence 34566667778999999999999999876654 5678999999999999999987543111 000 00 00 000000
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEE-EeeCC
Q 038902 204 LRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVI-VTSRR 277 (997)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~ 277 (997)
...+ .. ..... ...++.+.+.+.. .+++-++|+|++... ..+..+...+-.......+| +||+.
T Consensus 89 viei--------da-asn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 89 IIEM--------DA-ASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred EEEE--------ec-cccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 0000 00 00000 1112223333332 246678899999765 33444544333323344545 45444
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVA 337 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 337 (997)
..+...... ..+++.+++.++....+...+....-....+.+..|++.++|-+ .|+..+.
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444433222 68999999999999888876643322333456788999999865 4544444
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.6e-05 Score=91.14 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=117.3
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCc--e-EEEEEccCCCHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHD--K-AHVIVAESSDLRR 206 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~-~wv~v~~~~~~~~ 206 (997)
.++++...+.+++|++..++.|..++..+.+. -+.++|+.|+||||+|+.+++..-...... . .+- .+..-.
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~ 90 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGE 90 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccH
Confidence 44566677779999999999999999877654 688999999999999999998764321110 0 000 000001
Q ss_pred HHHHHHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEee
Q 038902 207 IQDKIAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTS 275 (997)
Q Consensus 207 ~~~~i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 275 (997)
-.+.|...-..+. + ....+ .+..+.+.+.. .+++-++|+|++.... ..+.+...+-.....+.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd-~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVD-DIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHH-HHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 1111211111100 0 00111 11122222222 2356679999997653 2444444443334456666555
Q ss_pred -CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 276 -RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 276 -r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
....+...+.. ..+++..++.++....+.+.+....-.-..+....|++.++|.+.-+.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33444433332 789999999999999998877543333344677889999999875543
No 108
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.3e-06 Score=69.24 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=29.6
Q ss_pred cccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEEEecCCc
Q 038902 544 EINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSS 599 (997)
Q Consensus 544 ~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~ 599 (997)
+|++|++++|.++.+| ..+..+++|++|++++|.++.++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555566665555554 24455555555555555555443 44555555555555543
No 109
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=6.1e-06 Score=89.26 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC--CCHHHHHHHHHHHh-----CCCCch-hhHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES--SDLRRIQDKIAELL-----KFKIEE-EDELQRRAT 230 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~--~~~~~~~~~i~~~l-----~~~~~~-~~~~~~~~~ 230 (997)
.-+.++|+|++|+|||||++.+++..... +|+. +|+.+.+. .++.++++++...+ +.+... .........
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45689999999999999999999988764 7998 99999866 78999999995433 221111 011222233
Q ss_pred HHHHHHhcCCcEEEEEcccccc
Q 038902 231 LAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 231 l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..+++...+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 3344444689999999998654
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=3.5e-05 Score=77.41 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=93.9
Q ss_pred HHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC--------------------CCceEEEEEcc-CCCHHHHH
Q 038902 151 SIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA--------------------PHDKAHVIVAE-SSDLRRIQ 208 (997)
Q Consensus 151 ~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~wv~v~~-~~~~~~~~ 208 (997)
.+.+.+..+++ ..+.++|+.|+||||+|+.+.+..-... +.|..++.... ....++ .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~-i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQ-V 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHH-H
Confidence 45566655655 6789999999999999999998865321 11222221111 111111 1
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh-hhhh
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-DVCS 282 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~ 282 (997)
+++. +.+.. .+.+-++|+||+.... ..+.+...+......+.+|++|++. .+..
T Consensus 82 ~~i~--------------------~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 82 RELV--------------------EFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHH--------------------HHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 1111 22211 2467789999987652 3444544444434466677777653 3333
Q ss_pred cCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh
Q 038902 283 KMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 283 ~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl 331 (997)
.+.. ..+++.+++.++..+.+.+. + -.++.+..|++.++|.|.
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CCHHHHHHHHHHcCCCcc
Confidence 2222 78999999999998888776 2 124568899999999875
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.8e-05 Score=90.79 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=119.0
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+.++++...+.+++|.+..++.|..++..+.+ ..+.++|+.|+||||+|+.+++.......... ...++.-...
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-----~~~c~~c~~c 80 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-----GRPCGTCEMC 80 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----CCCCccCHHH
Confidence 34556777777999999999999998877665 45689999999999999999987643111000 0011112223
Q ss_pred HHHHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC
Q 038902 209 DKIAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 209 ~~i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
+.|......+. + ....+. ...+.+.+.. .+++-++|+|++... ...+.+...+......+.+|++|.+
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 33332221110 0 011111 1222222222 246778999999755 3344454444333345666666644
Q ss_pred -hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 278 -LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 278 -~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
..+...... ..+++..++.++....+.+.+......-..+.+..|++.++|.+..+..
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 333332222 6788999999999988888775433333345788899999998854443
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.17 E-value=1.2e-05 Score=81.83 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=126.2
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQDK 210 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~~ 210 (997)
.++...+.+++|.+...+.|.+.+......+...+||+|.|||+-|++++...-....|.+ .-.++|......-+-..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 3455556689999999999999888777889999999999999999999988766556666 33355544332211101
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCc-EEEEEcccccc--ccccccccccCCCCCceEEEEeeCChh-hhhcCCC
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKK-VLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLD-VCSKMSD 286 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~-~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~ 286 (997)
+- +...............-++ -.+|||+++.. +.|.++..........+|.|+.+..-. +...+..
T Consensus 109 ik----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 IK----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred hc----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00 0000000000000000123 57899999876 668877666655566677666655433 2222222
Q ss_pred --eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHH
Q 038902 287 --VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVA 337 (997)
Q Consensus 287 --~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 337 (997)
.-+.+++|.+++...-++..+..+.-.-.++..+.|++.++|- --|+.++-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6789999999999999999887666566677889999999994 44544443
No 113
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.9e-06 Score=99.27 Aligned_cols=102 Identities=21% Similarity=0.338 Sum_probs=76.4
Q ss_pred cccEEEecCcccC-CCCccccccccCCEEEcCCCCcc-CCC-cccccCcccEEEecCCccc-ccCccccCCCCCcEEecc
Q 038902 544 EINFLDLSYTNIS-TLPGSIECLVKLRSLRAENTHLE-KAP-LKKEFKELVILILRGSSIR-ELPKGLERWINLKLLDLS 619 (997)
Q Consensus 544 ~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~l~-~lp-~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~ 619 (997)
.++.|+|+++.+. .+|..++.+.+|++|+|++|.+. .+| .++.+++|+.|+|++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677778877776 66777888888888888888776 456 7788888888888888776 567778888888888888
Q ss_pred CCccCCCCChHHhhc-CCCCcEEEeecC
Q 038902 620 NNIFLQGIPPNIISK-LCQLEELYIGNS 646 (997)
Q Consensus 620 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~ 646 (997)
+|.....+|.. ++. +.++..+++.++
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 88877777776 443 356667777654
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=3.8e-07 Score=91.53 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=37.5
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccce
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKE 799 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 799 (997)
|+++..+-+..|+--+.-...++..+|.+.-|+|..+++.++.....+..|+.|..|.+++.+.+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 5666666664443211122334455666667777777766665444455666666666666655443
No 115
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6e-05 Score=83.71 Aligned_cols=171 Identities=12% Similarity=0.100 Sum_probs=104.6
Q ss_pred ccccccHHHHHHHHHHhccCC----------ceEEEEEcCCCCcHHHHHHHHHHHHhhhC-------------------C
Q 038902 140 SDLTHSSKALNSIMKLLKDDK----------VNIIGLQGPGGIGKSTLMEQLAKQIDTIA-------------------P 190 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~ 190 (997)
.+++|.+..++.|..++..+. .+-+.++|+.|+|||++|+.+++..-... |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 368899999999999887653 45688999999999999999998753311 1
Q ss_pred CceEEEEEc-cCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCC
Q 038902 191 HDKAHVIVA-ESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGE 264 (997)
Q Consensus 191 f~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~ 264 (997)
-|..++... ....+. .+..+.+.+.. .+++-++|+|+++... ..+.+...+..
T Consensus 85 pD~~~i~~~~~~i~i~---------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PDVRVVAPEGLSIGVD---------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCEEEeccccccCCHH---------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 111111110 001111 11222222222 2455688889998752 23334333333
Q ss_pred CCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 265 ERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 265 ~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
..++..+|++|.+ ..+...+.. ..+.+++++.++..+.+.+..+. ..+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3445556666555 344444333 78999999999999888754431 1345778999999998755444
No 116
>PF14516 AAA_35: AAA-like domain
Probab=98.12 E-value=0.00021 Score=78.33 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=123.5
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-----CCHHHHHHHHH---
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-----SDLRRIQDKIA--- 212 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-----~~~~~~~~~i~--- 212 (997)
..+.|...-+++.+.+... -..+.|.|+-.+|||+|..++.+..+.. .+.++++++..- .+..+..+.++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred cccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 4678887777777777553 3689999999999999999999998764 566688888752 24555555444
Q ss_pred -HHhCCCCchh--------hHHHHHHHHHHHH-HhcCCcEEEEEcccccccccc----cccccc----------CCCCCc
Q 038902 213 -ELLKFKIEEE--------DELQRRATLAKRL-RERTKKVLIILDDVREKINLA----VSGIPY----------GEERKR 268 (997)
Q Consensus 213 -~~l~~~~~~~--------~~~~~~~~l~~~l-~~~~k~~LlvlDdv~~~~~~~----~l~~~~----------~~~~~g 268 (997)
++++.+..-. +......-+.+++ ....++++|++|+|+...... ++...+ +...+=
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 4454432100 1112222334433 335689999999997653211 111111 011111
Q ss_pred eEEEEeeCChhhhhc-----CCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcC
Q 038902 269 CKVIVTSRRLDVCSK-----MSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRG 342 (997)
Q Consensus 269 s~iivTtr~~~v~~~-----~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~ 342 (997)
+-|++.+........ ... ..++|++++.+|...|.+++-.....+ ..++|...++|+|.-+..++..+..
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~----~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQE----QLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHH----HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122222221111111 111 588999999999999998775332222 3888999999999999999999976
Q ss_pred CCc
Q 038902 343 KLA 345 (997)
Q Consensus 343 ~~~ 345 (997)
...
T Consensus 246 ~~~ 248 (331)
T PF14516_consen 246 EQI 248 (331)
T ss_pred ccC
Confidence 543
No 117
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.12 E-value=0.00017 Score=75.89 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=107.5
Q ss_pred cccccHHHHHHHHHHhccCC---ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhC-
Q 038902 141 DLTHSSKALNSIMKLLKDDK---VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLK- 216 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~- 216 (997)
.+.+|+.++..+...+..+. +.+|-|+|-+|.|||.+.+.+.+... -..+|+++-+.++.+.+..+|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n----~~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN----LENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC----CcceeeehHHhccHHHHHHHHHHHhcc
Confidence 57799999999998886543 34568999999999999999998872 23399999999999999999999985
Q ss_pred CCCchhhH-------HHHHHHHHH--HHHhcCCcEEEEEcccccccccccccccc------CCCCCceEEEEeeCCh--h
Q 038902 217 FKIEEEDE-------LQRRATLAK--RLRERTKKVLIILDDVREKINLAVSGIPY------GEERKRCKVIVTSRRL--D 279 (997)
Q Consensus 217 ~~~~~~~~-------~~~~~~l~~--~l~~~~k~~LlvlDdv~~~~~~~~l~~~~------~~~~~gs~iivTtr~~--~ 279 (997)
.+.+.... ......+.+ ...++++.++||||+++...+.+.+..+. ....+.. +|+++.-. .
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~ 161 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEK 161 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccHH
Confidence 22222111 122222333 22224579999999998876655432211 1122233 33333321 1
Q ss_pred h-hhcCCC---eeEEcCCCCHHHHHHHHHHHc
Q 038902 280 V-CSKMSD---VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 280 v-~~~~~~---~~~~l~~L~~~~~~~lf~~~~ 307 (997)
. ..+++. .++.++..+.+|..+++.+--
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1 222444 678889999999999886644
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=3.9e-05 Score=78.57 Aligned_cols=157 Identities=21% Similarity=0.279 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
...+-|+|+.|+|||.|.+++++......+ ...++++ ..++...++..+... ....+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC---
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh---
Confidence 457899999999999999999999876433 2236664 445566666555321 1223344444
Q ss_pred CcEEEEEcccccccc---ccc-cccccCC-CCCceEEEEeeCCh---------hhhhcCCC-eeEEcCCCCHHHHHHHHH
Q 038902 240 KKVLIILDDVREKIN---LAV-SGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VTVQIEELGEEDRLKLFK 304 (997)
Q Consensus 240 k~~LlvlDdv~~~~~---~~~-l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~~~l~~L~~~~~~~lf~ 304 (997)
.-=+|++||++.... |.. +...+.. ...|-+||+|++.. ++..++.. -++++++.++++-.++++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 455788999976522 221 2111111 12355899999643 23334444 689999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 305 QIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
+.+....-.--++++.-|++.+.+..-.+.
T Consensus 177 ~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 177 KKAKERGIELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHTT--S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHhhcCCHHHHH
Confidence 888644434445677777777776554443
No 119
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=3.3e-07 Score=94.48 Aligned_cols=233 Identities=18% Similarity=0.134 Sum_probs=126.5
Q ss_pred hhcCccccEEEecCcccC-----CCCccccccccCCEEEcCCCCcc----CCC--------cccccCcccEEEecCCccc
Q 038902 539 FEHMREINFLDLSYTNIS-----TLPGSIECLVKLRSLRAENTHLE----KAP--------LKKEFKELVILILRGSSIR 601 (997)
Q Consensus 539 ~~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~----~lp--------~~~~l~~L~~L~L~~~~l~ 601 (997)
+..+..+..++|++|.+. .+...+.+.++|+..++++-... .+| .+..+++|++|+|+.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 445788999999999876 34556777788888888875211 222 2334567778888777433
Q ss_pred -----ccCccccCCCCCcEEeccCCccCCCCChHHh-------------hcCCCCcEEEeecCCCCcccccCCCCCCCCh
Q 038902 602 -----ELPKGLERWINLKLLDLSNNIFLQGIPPNII-------------SKLCQLEELYIGNSFGNWELEETPNPKSAAF 663 (997)
Q Consensus 602 -----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 663 (997)
.+..-+.++..|++|.+.+|. ++......+ +.-+.|+++..++|.. .+ .......
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl----en--~ga~~~A 178 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL----EN--GGATALA 178 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc----cc--ccHHHHH
Confidence 222345567777777777776 332222211 1224444444433310 00 0001122
Q ss_pred HhhhCCCCCCEEEEEeccccccc----cccCCCCCCccEEEEEecCccccccccceEEeecCc-cc-chHHHH---Hhhc
Q 038902 664 KEVASLSRLTVLYIHINSTEVLS----KQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNIS-TP-LADWVK---LLLE 734 (997)
Q Consensus 664 ~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~---~~l~ 734 (997)
..++.++.|+.+.+..|.+..-. ...+. .++.|+.|+|..|. +. -...+. ..++
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~-----------------~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-----------------HCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHH-----------------hCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 23444455555555544422111 11122 34445555555544 11 001111 2257
Q ss_pred cccceecCCCCCCcccccccc-----cCCCCccEEEEeccCCcccc---chhhHHHhcCCcEEeeecccc
Q 038902 735 KTEDLTLTRSRDLEDIGAIEV-----QGLTALMTMHLRACSLQRIF---RSSFYARARNAEELNVEYCYS 796 (997)
Q Consensus 735 ~L~~L~L~~~~~l~~~~~~~~-----~~l~~L~~L~L~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~ 796 (997)
+|+.|+++.|. +..-+...| ...|+|+.|.+.+|.++.-. -.......|.|+.|+|++|..
T Consensus 242 ~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78889996665 444443333 23789999999999965421 112234579999999999874
No 120
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=5.8e-06 Score=98.69 Aligned_cols=78 Identities=31% Similarity=0.474 Sum_probs=51.0
Q ss_pred CCEEEcCCCCccC-CC-cccccCcccEEEecCCccc-ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEee
Q 038902 568 LRSLRAENTHLEK-AP-LKKEFKELVILILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIG 644 (997)
Q Consensus 568 L~~L~L~~~~l~~-lp-~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 644 (997)
++.|+|++|.+.. +| .++++++|+.|+|++|.+. .+|..+..+++|+.|++++|.....+|.. ++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 5666666666653 44 6666777777777776665 55666667777777777776655566655 5667777777766
Q ss_pred cC
Q 038902 645 NS 646 (997)
Q Consensus 645 ~~ 646 (997)
+|
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 54
No 121
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=1.9e-05 Score=81.19 Aligned_cols=139 Identities=15% Similarity=0.098 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
.+.+.|+|+.|+|||+|++.+++.... .+++.. .+...++. .+ +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~------~~i~~~------~~~~~~~~--------------------~~----~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA------LLIHPN------EIGSDAAN--------------------AA----A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC------EEecHH------HcchHHHH--------------------hh----h
Confidence 467999999999999999998876432 233221 11111111 11 1
Q ss_pred cEEEEEccccccc-cccccccccCC-CCCceEEEEeeCC---------hhhhhcCCC-eeEEcCCCCHHHHHHHHHHHcC
Q 038902 241 KVLIILDDVREKI-NLAVSGIPYGE-ERKRCKVIVTSRR---------LDVCSKMSD-VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 241 ~~LlvlDdv~~~~-~~~~l~~~~~~-~~~gs~iivTtr~---------~~v~~~~~~-~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
.-+|++||+.... .-+.+...+.. ...|..||+|++. ++...++.. .++++++++.++-.+++++.+.
T Consensus 88 ~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 88 EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 1378889996431 11112122211 1335678888873 334445555 7999999999999999998885
Q ss_pred CCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 309 LPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 309 ~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
...-.--+++..-|++++.|..-++..
T Consensus 168 ~~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 433334456788888888887766654
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=3.9e-05 Score=77.41 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=106.1
Q ss_pred CCCccccccccHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 135 DIHSVSDLTHSSKALNSIMKLLK-----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 135 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
+...+.+|+|.++-++++-=++. .+....|.++|++|.||||||.-+++...+. +.. .-.....-..=+.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~---tsGp~leK~gDla 95 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKI---TSGPALEKPGDLA 95 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEe---cccccccChhhHH
Confidence 34556689999988888865553 3457899999999999999999999998762 211 1110000111111
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------cccccccc-CCCCCce----------
Q 038902 210 KIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPY-GEERKRC---------- 269 (997)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~-~~~~~gs---------- 269 (997)
.|+..+. ..=++++|.+..... .+++.... -..++++
T Consensus 96 aiLt~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 96 AILTNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHHhcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 2222221 333445555433200 01110000 0112222
Q ss_pred -EEEEeeCChhhhhcCCC---eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 270 -KVIVTSRRLDVCSKMSD---VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 270 -~iivTtr~~~v~~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
-|=-|||.-.+..-+.. .+.+++..+.+|-.+...+.+..-.-+-.++-+.+|+++..|-|--..-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 34478886555443333 478899999999999999988754445556678999999999996555444433
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=8.9e-05 Score=86.74 Aligned_cols=197 Identities=15% Similarity=0.211 Sum_probs=112.3
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+..+++...+.+++|++...+.+..++..+.+ +...++|+.|+||||+|+.+++..-....-+ ...++.-...
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~pC~~C~~C 79 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GEPCNECEIC 79 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccHHH
Confidence 34456677777999999999999999977654 4567899999999999999998754211000 0001111111
Q ss_pred HHHHHHhCCCC---chh--hHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEee-CC
Q 038902 209 DKIAELLKFKI---EEE--DELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTS-RR 277 (997)
Q Consensus 209 ~~i~~~l~~~~---~~~--~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~ 277 (997)
+.|......+. +.. ........+.+.+.. .+++-++|+|++... ..+..+...+........+|++| ..
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 12211111000 000 001111222222221 346778899999765 33444443333223344555544 44
Q ss_pred hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 278 LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 278 ~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
..+...+.. ..+++.+++.++....+...+....-.-..+.+..|++.++|.+..
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 444333322 6789999999999888887775333233345677888888886643
No 124
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-07 Score=104.30 Aligned_cols=104 Identities=32% Similarity=0.420 Sum_probs=58.8
Q ss_pred hcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEecc
Q 038902 540 EHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLS 619 (997)
Q Consensus 540 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 619 (997)
..+.+|..|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++.+|.+..+. ++..+.+|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44556666666666666554445566666666666666666665666666666666666655542 33446666666666
Q ss_pred CCccCCCCCh-HHhhcCCCCcEEEeecC
Q 038902 620 NNIFLQGIPP-NIISKLCQLEELYIGNS 646 (997)
Q Consensus 620 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 646 (997)
+|. +..+.. . ...+.+|+.+.+.++
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCC
Confidence 665 333332 1 245555555555443
No 125
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=2.3e-05 Score=81.15 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=111.0
Q ss_pred HHHhcCCCCccccccccHHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 129 ELMASRDIHSVSDLTHSSKAL---NSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 129 ~~~~~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
.++++-+...+.++||.+..+ .-|...+..+.+.-+.+||++|+||||||+.++..-+... ..+|.+|....-.
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t 203 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKT 203 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccch
Confidence 346666666666777765443 3345566678889999999999999999999998876521 2566666543332
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEE--eeCChhh-
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIV--TSRRLDV- 280 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~~~v- 280 (997)
+=.+.|..+-.. ...+. ++|.+|++|+|..- .+-+-+ +|...+|+.++| ||.+..-
T Consensus 204 ~dvR~ife~aq~--------------~~~l~--krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 204 NDVRDIFEQAQN--------------EKSLT--KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQ 264 (554)
T ss_pred HHHHHHHHHHHH--------------HHhhh--cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccc
Confidence 333333332110 01223 48999999999754 333333 556677876665 5555431
Q ss_pred --hhcCCC-eeEEcCCCCHHHHHHHHHHHcC----------CCCCh---hhHHHHHHHHHHhCCch
Q 038902 281 --CSKMSD-VTVQIEELGEEDRLKLFKQIAR----------LPDSE---AFEGAAKVIVKACGSLP 330 (997)
Q Consensus 281 --~~~~~~-~~~~l~~L~~~~~~~lf~~~~~----------~~~~~---~~~~~~~~i~~~~~glP 330 (997)
+..+.. .++-|+.|+.++-..++.+... ..+++ -...+..-++..|.|-.
T Consensus 265 ln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 265 LNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 111112 6889999999999998877432 11111 23446667777788854
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00011 Score=84.11 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=110.4
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhC--C-----------------
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIA--P----------------- 190 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~--~----------------- 190 (997)
..+++...+.+++|.+...+.+..++..+.+. ...++|+.|+||||+|+.++....... .
T Consensus 7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 34455666668999999999999999876654 467899999999999999998764210 0
Q ss_pred Cce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCC
Q 038902 191 HDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGE 264 (997)
Q Consensus 191 f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~ 264 (997)
+.. ++++.+....+ +....+.+.+.. .+++-++|+|+++.. ...+.+...+..
T Consensus 87 ~~d~~eidaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 87 FPDLIEIDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred CCcEEEEeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 001 11211111111 111122222222 246779999999765 223444333433
Q ss_pred CCCceEEEEee-CChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 265 ERKRCKVIVTS-RRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 265 ~~~gs~iivTt-r~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
......+|++| +...+...... ..+++.+++.++....+.+++....-.-..+.+..|++.++|.+-.+.
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33345555555 43333332221 689999999999988888776533323334567788899999665443
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=3.5e-05 Score=86.14 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=97.2
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|++.+++++.+.+.. ...+-+.++|++|+|||++|+++++.... .| +.+. ...+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~----~~v~----~~~l 192 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF----IRVV----GSEL 192 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE----Eecc----hHHH
Confidence 788999999999876631 12456899999999999999999997653 22 2221 1111
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc----------------cccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~gs 269 (997)
.... ++ ........+.+.... ..+.+|++||++... .+..+...+. ....+.
T Consensus 193 ~~~~---~g------~~~~~i~~~f~~a~~-~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 262 (364)
T TIGR01242 193 VRKY---IG------EGARLVREIFELAKE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNV 262 (364)
T ss_pred HHHh---hh------HHHHHHHHHHHHHHh-cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 1110 11 011111222222222 467899999997531 0111111111 123467
Q ss_pred EEEEeeCChhhhh-----cCCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCS-----KMSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~-----~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
+||.||+..+... ...- ..+.++..+.++..++|+.++........ .-...+++.+.|..
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-~~~~~la~~t~g~s 328 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-CCHHHHHHHcCCCC
Confidence 8888888543221 1111 57899999999999999988753221110 11456777777754
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.04 E-value=3.7e-05 Score=81.59 Aligned_cols=130 Identities=12% Similarity=0.215 Sum_probs=71.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
...+.++|++|+||||+|+.+++.......-.. .++.++.. ++... ..+. ....+.+.+.. .
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~~g~---------~~~~~~~~~~~-a 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---YIGH---------TAQKTREVIKK-A 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---hccc---------hHHHHHHHHHh-c
Confidence 456889999999999999999987643221122 33333221 11111 0110 11222233332 1
Q ss_pred CcEEEEEccccccc----------cccccccccCCCCCceEEEEeeCChhh----------hhcCCCeeEEcCCCCHHHH
Q 038902 240 KKVLIILDDVREKI----------NLAVSGIPYGEERKRCKVIVTSRRLDV----------CSKMSDVTVQIEELGEEDR 299 (997)
Q Consensus 240 k~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtr~~~v----------~~~~~~~~~~l~~L~~~~~ 299 (997)
..-+|++|+++... ..+.+............+|+++...+. ..++ ...+.+++++.++-
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEEL 183 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHH
Confidence 34588999997531 222332222222333455666544322 2222 14688999999999
Q ss_pred HHHHHHHcC
Q 038902 300 LKLFKQIAR 308 (997)
Q Consensus 300 ~~lf~~~~~ 308 (997)
.+++++.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987774
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=85.86 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=114.5
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
++++...+.+++|.+...+.|..++..+.. ..+.++|+.|+||||+|+.+++..-........ ...+..-...+.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~ 83 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRA 83 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHH
Confidence 344555666899999999999999877654 577899999999999999999987532111000 011111122222
Q ss_pred HHHHhCCCC---c---hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC-h
Q 038902 211 IAELLKFKI---E---EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR-L 278 (997)
Q Consensus 211 i~~~l~~~~---~---~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~ 278 (997)
+......+. + .... +.++.+.+.+.. .+++-++|+|+++.. ...+.+...+........+|++|.+ .
T Consensus 84 i~~g~h~D~~ei~~~~~~~v-d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGV-DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCCccEEEEeccccCCH-HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 222211110 0 0011 111222222221 245668899999865 3345554444333334555555543 3
Q ss_pred hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 279 DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 279 ~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
.+...+.. ..+++..++.++....+.+.+......-..+.+..|++.++|.+..+..
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33333322 6788999999998888877665333222335678899999997754443
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=8.1e-05 Score=87.51 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=116.4
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.++++...+.+++|.+...+.|..++..+.+. .+.++|+.|+||||+|+.+++..-.....+. ..++.-....
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~------~~c~~c~~c~ 80 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA------EPCNVCPPCV 80 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC------CCCCccHHHH
Confidence 45566777779999999999999999877654 5689999999999999999988643211100 0000001111
Q ss_pred HHHHHhCCC---Cch--hhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEee-CCh
Q 038902 210 KIAELLKFK---IEE--EDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTS-RRL 278 (997)
Q Consensus 210 ~i~~~l~~~---~~~--~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-r~~ 278 (997)
.|...-..+ .+. ....+.+..+.+.+.. .+++-++|+|++.... ..+.+...+-.....+.+|++| ...
T Consensus 81 ~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 111000000 000 0000112222222222 2355678899997653 2344443343333455666555 444
Q ss_pred hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHHHH
Q 038902 279 DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAGAL 340 (997)
Q Consensus 279 ~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 340 (997)
.+...+.. ..+++.+++.++....+...+....-.-..+....|++.++|.. .|+..+-..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45443332 68899999999988888776653333334456788999999854 5655554443
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=5.5e-05 Score=83.19 Aligned_cols=152 Identities=13% Similarity=0.232 Sum_probs=89.1
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
++++...+.+++|.+...+.+.+++..+.. .++.++|++|+||||+|+.+++... .+...++.+. .....+...
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~----~~~~~i~~~~-~~~~~i~~~ 87 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG----AEVLFVNGSD-CRIDFVRNR 87 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----ccceEeccCc-ccHHHHHHH
Confidence 345556667899999999999999977654 5666799999999999999998753 2224444443 211111111
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--c-cccccccccCCCCCceEEEEeeCChh-hhhcCCC
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--I-NLAVSGIPYGEERKRCKVIVTSRRLD-VCSKMSD 286 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~-~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~ 286 (997)
+ ... .......+.+-++|+||+... . ....+...+.....+.++|+||.... +...+..
T Consensus 88 l-~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 88 L-TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred H-HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 1 110 001100125567899999755 1 11223222333345678898887543 1111111
Q ss_pred --eeEEcCCCCHHHHHHHHHH
Q 038902 287 --VTVQIEELGEEDRLKLFKQ 305 (997)
Q Consensus 287 --~~~~l~~L~~~~~~~lf~~ 305 (997)
..+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 4677777777777666543
No 132
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.96 E-value=8.3e-05 Score=77.28 Aligned_cols=169 Identities=12% Similarity=0.115 Sum_probs=97.0
Q ss_pred ccc-ccH-HHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 141 DLT-HSS-KALNSIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 141 ~~~-gr~-~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
+|+ |.. ..+..+.++... ...+.+.|+|+.|+|||+||+.+++..... .....+++..... .. +
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i~~~~~~------~~----~-- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GRNARYLDAASPL------LA----F-- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEehHHhH------HH----H--
Confidence 444 443 334445454432 345688999999999999999999986432 2333555543211 00 0
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccccc--ccccccCC-CCCce-EEEEeeCChhhh--------hcCC
Q 038902 218 KIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINLA--VSGIPYGE-ERKRC-KVIVTSRRLDVC--------SKMS 285 (997)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~--~l~~~~~~-~~~gs-~iivTtr~~~v~--------~~~~ 285 (997)
.... ..-+||+||+.....+. .+...+.. ...+. .||+|++..... .++.
T Consensus 86 ---------------~~~~---~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 ---------------DFDP---EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred ---------------hhcc---cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 0111 34478889997543222 22222211 12333 466666643321 1332
Q ss_pred C-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 286 D-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 286 ~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
. ..++++++++++-..++.+.+....-.--++....+++.+.|.+..+..+-..+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2 688999999988777776644322233344577788888999988877665544
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.95 E-value=0.00011 Score=90.04 Aligned_cols=178 Identities=13% Similarity=0.199 Sum_probs=103.2
Q ss_pred CCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce-EE-EEEccCCCHHHHHH
Q 038902 136 IHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK-AH-VIVAESSDLRRIQD 209 (997)
Q Consensus 136 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~w-v~v~~~~~~~~~~~ 209 (997)
...+..++||+.++.++++.|......-+.++|++|+||||+|+.++++...... .+. +| ++++. +
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l-- 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L-- 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h--
Confidence 3444488999999999999887766667789999999999999999998754211 112 22 22211 0
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-------ccc--ccccccCCCCCc-eEEEEeeCChh
Q 038902 210 KIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI-------NLA--VSGIPYGEERKR-CKVIVTSRRLD 279 (997)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-------~~~--~l~~~~~~~~~g-s~iivTtr~~~ 279 (997)
.. +... ..........+.+.+...+++.+|++|++.... .-+ .+..+. -.+| -++|-||...+
T Consensus 255 --~a--g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 --QA--GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred --hc--cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 00 0000 111122222333333322478999999986642 111 122222 2233 45666665432
Q ss_pred h----------hhcCCCeeEEcCCCCHHHHHHHHHHHcC---C-CCChhhHHHHHHHHHHhCCch
Q 038902 280 V----------CSKMSDVTVQIEELGEEDRLKLFKQIAR---L-PDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 280 v----------~~~~~~~~~~l~~L~~~~~~~lf~~~~~---~-~~~~~~~~~~~~i~~~~~glP 330 (997)
. ..++ ..+.+++++.++..++++.... . ..-.-.++....+++.+++..
T Consensus 328 ~~~~~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRF--QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhC--eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2 2222 6899999999999999755442 1 111223455666777776543
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00052 Score=74.33 Aligned_cols=200 Identities=12% Similarity=0.186 Sum_probs=126.4
Q ss_pred cccccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.++||+.|+..+.+|+.. ...+-+-|.|-+|.|||.+...++.+...... |..++++...-.....++..|...+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 688999999999988853 45788999999999999999999998876433 3337777766567888888888777
Q ss_pred C-CCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccC-CCCCceEEEEeeCCh--hhhh-------
Q 038902 216 K-FKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYG-EERKRCKVIVTSRRL--DVCS------- 282 (997)
Q Consensus 216 ~-~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~iivTtr~~--~v~~------- 282 (997)
- .........+....+.++..+...-+|+|+|+.+.... -..+...|. +.-+++|+|+.---. +..+
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhh
Confidence 2 11111222344455566666534579999999876421 112222232 234566665433211 1111
Q ss_pred ---cCCCeeEEcCCCCHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhCC----chhHHHHHHHHH
Q 038902 283 ---KMSDVTVQIEELGEEDRLKLFKQIARLPDS-EAFEGAAKVIVKACGS----LPNAIAIVAGAL 340 (997)
Q Consensus 283 ---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~i~~~~~g----lPlai~~~~~~l 340 (997)
.+....+.+++.+.++-.++|+.+....+. .......+.+|+|+.| +--|+.+.-+++
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 122278899999999999999988864332 2222344445555544 555555554443
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.93 E-value=0.00035 Score=74.67 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHh-CCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELL-KFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
.+.++|++|+||||+|+.+++.......... -++.++. .++ ...+ +.. .. .+.+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~----~~~~~~~~-a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----AP----KTKEILKR-AM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hH----HHHHHHHH-cc
Confidence 6889999999999999999887754322222 3554442 122 2221 211 11 12222332 24
Q ss_pred cEEEEEcccccc-----------ccccccccccCCCCCceEEEEeeCChhhhh--cCC-------CeeEEcCCCCHHHHH
Q 038902 241 KVLIILDDVREK-----------INLAVSGIPYGEERKRCKVIVTSRRLDVCS--KMS-------DVTVQIEELGEEDRL 300 (997)
Q Consensus 241 ~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~~--~~~-------~~~~~l~~L~~~~~~ 300 (997)
.-+|++|++... +.++.+...+.....+.+||+++.....-. ... ...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999632 112233333333344667777775432211 111 257899999999999
Q ss_pred HHHHHHcC
Q 038902 301 KLFKQIAR 308 (997)
Q Consensus 301 ~lf~~~~~ 308 (997)
+++.+.+.
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887763
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00063 Score=72.65 Aligned_cols=129 Identities=14% Similarity=0.181 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
..+.++|++|+||||+|+.+++.......-.. -|+.++. .++.... .+.. . ....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-----~----~~~~~~l~~-a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-----A----PKTKEVLKK-AM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-----h----HHHHHHHHH-cc
Confidence 35889999999999999999987653222222 3555542 1222211 1111 0 111222322 13
Q ss_pred cEEEEEcccccc-----------ccccccccccCCCCCceEEEEeeCChhhh----------hcCCCeeEEcCCCCHHHH
Q 038902 241 KVLIILDDVREK-----------INLAVSGIPYGEERKRCKVIVTSRRLDVC----------SKMSDVTVQIEELGEEDR 299 (997)
Q Consensus 241 ~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~----------~~~~~~~~~l~~L~~~~~ 299 (997)
.-+|++|++... +..+.+...........+||+++....+. .++ ...+.+++++.++.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el 201 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEEL 201 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHH
Confidence 459999999652 11122222233334456777877644332 222 15899999999999
Q ss_pred HHHHHHHcC
Q 038902 300 LKLFKQIAR 308 (997)
Q Consensus 300 ~~lf~~~~~ 308 (997)
.+++.+.+.
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 998877764
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.92 E-value=0.00016 Score=88.25 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=89.8
Q ss_pred ccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC---C-Cce-EEEEEccCCCHHHHHHHHH
Q 038902 138 SVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA---P-HDK-AHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---~-f~~-~wv~v~~~~~~~~~~~~i~ 212 (997)
.+..++||+.+++++++.|......-+.++|++|+|||++|+.++++..... . .+. +|.- +...+ .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l----~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL----L 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH----h
Confidence 3347899999999999988776666778999999999999999999874321 0 123 3321 11111 1
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------ccccccccCCCCCc-eEEEEeeCChh--
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------LAVSGIPYGEERKR-CKVIVTSRRLD-- 279 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------~~~l~~~~~~~~~g-s~iivTtr~~~-- 279 (997)
.. ... ..........+.+.+.. .++.+|++|++..... ...+..+.. .+| -++|-+|...+
T Consensus 251 a~--~~~-~g~~e~~l~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 251 AG--TKY-RGDFEERLKAVVSEIEK-EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred hh--ccc-cchHHHHHHHHHHHHhc-cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHH
Confidence 10 000 01122233333333332 3689999999974421 111212211 223 34555554322
Q ss_pred --------hhhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 280 --------VCSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 280 --------v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
...++ ..+.++..+.++..+++++..
T Consensus 325 ~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 12222 578999999999999998655
No 138
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=1.2e-06 Score=99.84 Aligned_cols=190 Identities=23% Similarity=0.259 Sum_probs=120.3
Q ss_pred CceEEEcccCCCcCCCC-CCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPD-EPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 576 (997)
.+..+++..|.+..+-. ...+++|..|++..|.+..+... +..+.+|++|++++|.|+.+ ..+..+..|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccC
Confidence 33344455555554222 23678888888888887776542 46688999999999998877 34677788999999999
Q ss_pred CccCCCcccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 577 HLEKAPLKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 577 ~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
.++.++.+..+..|+.+++++|.+..+... ...+.+|+.+.+.+|. +..+.. +..+..+..+++..+.
T Consensus 151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~-------- 219 (414)
T KOG0531|consen 151 LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNK-------- 219 (414)
T ss_pred cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhccccc--------
Confidence 998888888899999999999988877553 5788888989888886 333322 2233333333333221
Q ss_pred CCCCCCChHhhhCCC--CCCEEEEEeccccccccccCCCCCCccEEEEEecC
Q 038902 656 PNPKSAAFKEVASLS--RLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVND 705 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (997)
...+..+..+. +|+.+++.++.+...+ .....+..+..|++..+.
T Consensus 220 ----i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 220 ----ISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ----ceeccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcc
Confidence 11112222222 2777777777765442 112233555555554443
No 139
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=9.1e-05 Score=84.27 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
..-+.|+|..|+|||+|++++++....... ...+++. ..++...+...++... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc---
Confidence 356899999999999999999997654322 2225443 3456667666654210 12233444444
Q ss_pred CcEEEEEccccccc---cc-cccccccCC-CCCceEEEEeeCCh---------hhhhcCCC-eeEEcCCCCHHHHHHHHH
Q 038902 240 KKVLIILDDVREKI---NL-AVSGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VTVQIEELGEEDRLKLFK 304 (997)
Q Consensus 240 k~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~~~l~~L~~~~~~~lf~ 304 (997)
+.-+||+||+.... .+ +.+...+.. ...|..||+|+... .+..++.. -++++++++.++-.++++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 44588899996542 12 222222211 12344688887633 23334443 678899999999999999
Q ss_pred HHcCCCC--ChhhHHHHHHHHHHhCCchhHHHHHHH
Q 038902 305 QIARLPD--SEAFEGAAKVIVKACGSLPNAIAIVAG 338 (997)
Q Consensus 305 ~~~~~~~--~~~~~~~~~~i~~~~~glPlai~~~~~ 338 (997)
+++.... ..-.+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8885321 134467889999999999877665543
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=58.33 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=23.5
Q ss_pred cccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC
Q 038902 544 EINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP 582 (997)
Q Consensus 544 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp 582 (997)
+|++|++++|.|+.+|..+++|++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666665666666666666666665544
No 141
>PRK05642 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.0001 Score=76.41 Aligned_cols=147 Identities=17% Similarity=0.245 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
...+.|+|+.|+|||.|++++++....+ .-.+++++..+ +... ...+.+.+.+ -
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~--~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ--Y 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh--C
Confidence 3678999999999999999999887542 22236665432 2111 0123444443 3
Q ss_pred cEEEEEcccccc---ccccc-cccccCC-CCCceEEEEeeCChh---------hhhcCCC-eeEEcCCCCHHHHHHHHHH
Q 038902 241 KVLIILDDVREK---INLAV-SGIPYGE-ERKRCKVIVTSRRLD---------VCSKMSD-VTVQIEELGEEDRLKLFKQ 305 (997)
Q Consensus 241 ~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~~-~~~~l~~L~~~~~~~lf~~ 305 (997)
. ++|+||+... ..|.. +...+.. ...|.+||+|++... +..++.. .+++++++++++-.+.+++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 6788999643 23432 3222221 123567888887432 2223333 6789999999999999986
Q ss_pred HcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 306 IARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
++....-.--+++..-|++++.|..-++.
T Consensus 178 ka~~~~~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 178 RASRRGLHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 65422222235677888888888654444
No 142
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.87 E-value=3.5e-06 Score=99.13 Aligned_cols=247 Identities=21% Similarity=0.218 Sum_probs=130.6
Q ss_pred CCCCCCEEEEEecc-cccc-ccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCC
Q 038902 668 SLSRLTVLYIHINS-TEVL-SKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSR 745 (997)
Q Consensus 668 ~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~ 745 (997)
.+++|+.|.+..+. +... .......++.|+.|.+.++...+. ........+...+.+|+.|++..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT-----------LSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc-----------cchhHhhhhhhhcCCcCccchhhhh
Confidence 46777777777653 2211 112223456666666654211000 0011112234447889999998888
Q ss_pred CCcccccccccC-CCCccEEEEeccC-CccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeec
Q 038902 746 DLEDIGAIEVQG-LTALMTMHLRACS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELIL 823 (997)
Q Consensus 746 ~l~~~~~~~~~~-l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 823 (997)
.+++.+...+.. +++|+.|.+.+|. +++..-......+++|++|+++.|..+++-. .......+|+|+.|.+
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~------l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG------LEALLKNCPNLRELKL 328 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH------HHHHHHhCcchhhhhh
Confidence 777776555544 7899999988888 6665444556678899999999988763311 1122445777777665
Q ss_pred CCcc---CcceecccCCCcccC-CCccEEEEeecCCCCccCChHHHHhhcCCc-eEeecCCcch-hhhhcCCCCCCcccc
Q 038902 824 EGLP---KLLTIWKGNHSKAHV-ENLEIMRVKECGKLKNIFSKTLALKLGKLE-QLSFQKCDRL-EEIVSSDEPEEKPEA 897 (997)
Q Consensus 824 ~~~~---~l~~~~~~~~~~~~l-~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~-~L~l~~c~~l-~~l~~~~~~~~~~~~ 897 (997)
..+. .++...-... .... ..+..+.+.+|++++++. ..... ..... .+.+.+|+.+ ..+....
T Consensus 329 ~~~~~c~~l~~~~l~~~-~~~~~d~~~~~~~~~~~~l~~~~-l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~-------- 397 (482)
T KOG1947|consen 329 LSLNGCPSLTDLSLSGL-LTLTSDDLAELILRSCPKLTDLS-LSYCG-ISDLGLELSLRGCPNLTESLELRL-------- 397 (482)
T ss_pred hhcCCCccHHHHHHHHh-hccCchhHhHHHHhcCCCcchhh-hhhhh-ccCcchHHHhcCCcccchHHHHHh--------
Confidence 5543 2333210000 0011 145555555555555441 11111 22222 4556666655 2221111
Q ss_pred cccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccce
Q 038902 898 AVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMER 950 (997)
Q Consensus 898 ~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~ 950 (997)
..+..|+.|++..|..++..........+..++.+.+.+|+.+..
T Consensus 398 --------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 398 --------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred --------ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 113337888888887666543332222266677777777776664
No 143
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=3.4e-05 Score=84.12 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=38.9
Q ss_pred CCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCC
Q 038902 758 LTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNH 837 (997)
Q Consensus 758 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 837 (997)
+++++.|++++|.++.+ |. -.++|++|.+++|..++.++. .-.++|++|.+++|.++..++
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~----LP~sLtsL~Lsnc~nLtsLP~----------~LP~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV----LPNELTEITIENCNNLTTLPG----------SIPEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC----CCCCCcEEEccCCCCcccCCc----------hhhhhhhheEccCcccccccc----
Confidence 45566666666665555 21 233566666666666655431 112467777777766555431
Q ss_pred CcccCCCccEEEEe
Q 038902 838 SKAHVENLEIMRVK 851 (997)
Q Consensus 838 ~~~~l~~L~~L~l~ 851 (997)
++|+.|++.
T Consensus 112 -----~sLe~L~L~ 120 (426)
T PRK15386 112 -----ESVRSLEIK 120 (426)
T ss_pred -----cccceEEeC
Confidence 346666654
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.81 E-value=0.00037 Score=86.13 Aligned_cols=152 Identities=18% Similarity=0.256 Sum_probs=88.5
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-C---Cce-EEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-P---HDK-AHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~-~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.++||+++++++++.|......-+.++|++|+|||++|+.++.+..... + -+. +|. + +...++ .
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c--
Confidence 5799999999999999776666678999999999999999999865311 1 123 443 1 111111 1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCCceEEEEeeCChhhhh----
Q 038902 216 KFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPYGEERKRCKVIVTSRRLDVCS---- 282 (997)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~iivTtr~~~v~~---- 282 (997)
+.... ....+....+.+.+.. .++.+|++|++..... ...+..+....+ .-++|-+|...+...
T Consensus 249 g~~~~-ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 GTKYR-GEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred cCCCc-cHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhc
Confidence 11111 1222233333344433 4789999999964311 111212211111 235555555443211
Q ss_pred --cCCC--eeEEcCCCCHHHHHHHHHHH
Q 038902 283 --KMSD--VTVQIEELGEEDRLKLFKQI 306 (997)
Q Consensus 283 --~~~~--~~~~l~~L~~~~~~~lf~~~ 306 (997)
.+.. ..+.++..+.++...+++..
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1112 67888999999988887654
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=7.8e-07 Score=99.60 Aligned_cols=125 Identities=24% Similarity=0.248 Sum_probs=99.3
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
|..+...++++|.+..+.... -++.|+.|+|++|+++... .+..+++|+.|||++|.+..+|..-..=.+|..|+++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 667788888888877666555 5688999999999887655 6788999999999999998887532222349999999
Q ss_pred CCCccCCCcccccCcccEEEecCCcccccC--ccccCCCCCcEEeccCCc
Q 038902 575 NTHLEKAPLKKEFKELVILILRGSSIRELP--KGLERWINLKLLDLSNNI 622 (997)
Q Consensus 575 ~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~ 622 (997)
+|.++.+-.+.+|.+|+.||+++|-+.... ..++.|..|+.|.|.||.
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999889999999999999998655331 335678889999999987
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.75 E-value=0.0006 Score=78.53 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=100.0
Q ss_pred HHHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhH
Q 038902 148 ALNSIMKLLKDD--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDE 224 (997)
Q Consensus 148 ~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 224 (997)
......++.... ...-+.|+|+.|+|||+|++++++.......-.. ++++. .++...+...+...
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------ 200 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN------ 200 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------
Confidence 344444444332 2356899999999999999999999875322222 55543 23344444444221
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccccc---c-cccccccCC-CCCceEEEEeeCChh---------hhhcCCC-eeE
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREKIN---L-AVSGIPYGE-ERKRCKVIVTSRRLD---------VCSKMSD-VTV 289 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~~-~~~ 289 (997)
....+.+.++ +.-+||+||+..... + +.+...+.. ...|..||+|+.... +..++.. ..+
T Consensus 201 --~~~~~~~~~~---~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v 275 (450)
T PRK00149 201 --TMEEFKEKYR---SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTV 275 (450)
T ss_pred --cHHHHHHHHh---cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeE
Confidence 1123344444 344889999965311 1 122121111 122445788776431 2334444 689
Q ss_pred EcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 290 QIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 290 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
++++.+.++-..++++.+......--+++..-|++.+.|..-.
T Consensus 276 ~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 276 DIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHH
Confidence 9999999999999998885433334456788899998887653
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.0003 Score=79.97 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
...+.|+|+.|+|||+|++++++....... ...++++ ..++...+...+... ....+.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRS-- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHh--
Confidence 356899999999999999999998865321 2225554 334444555544321 12233444443
Q ss_pred CcEEEEEcccccccc---c-cccccccCC-CCCceEEEEeeCCh-h--------hhhcCCC-eeEEcCCCCHHHHHHHHH
Q 038902 240 KKVLIILDDVREKIN---L-AVSGIPYGE-ERKRCKVIVTSRRL-D--------VCSKMSD-VTVQIEELGEEDRLKLFK 304 (997)
Q Consensus 240 k~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtr~~-~--------v~~~~~~-~~~~l~~L~~~~~~~lf~ 304 (997)
.-+|++||++.... + +.+...+.. ...|..+|+|+... . +..++.. ..+.+++.+.++-..+++
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 34788999975421 1 112111111 12344577877642 1 2233333 578999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 305 QIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
+.+......-.+++...|++.+.|.+-.
T Consensus 279 ~~~~~~~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 279 KKAEEEGLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 8886433333456788888888886654
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=0.00035 Score=78.39 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=95.5
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|++.+++++.+.+.. ...+-|.++|++|+|||++|+++++.... + ++.++. .++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~----~i~v~~----~~l 201 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T----FIRVVG----SEL 201 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C----EEEeeh----HHH
Confidence 678999999998876621 23567899999999999999999987643 2 222221 111
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc------------c----ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs 269 (997)
... ..+ .. ......+.+.... ..+.+|++||++... . +..+...+. ....+.
T Consensus 202 ~~~---~~g-----~~-~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 202 VQK---FIG-----EG-ARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred hHh---hcc-----ch-HHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 111 011 01 1111222222222 367899999997531 0 111111111 112356
Q ss_pred EEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 270 KVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
+||.||...+.... . +. ..+.++..+.++-.++|+.+.....-... .....+++.+.|.
T Consensus 272 ~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-~~~~~la~~t~g~ 336 (389)
T PRK03992 272 KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-VDLEELAELTEGA 336 (389)
T ss_pred EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-CCHHHHHHHcCCC
Confidence 78888876543221 1 11 57999999999999999988753221110 1135566677664
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00063 Score=77.45 Aligned_cols=167 Identities=15% Similarity=0.265 Sum_probs=98.1
Q ss_pred HHHHHHhccC-CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHH
Q 038902 150 NSIMKLLKDD-KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQR 227 (997)
Q Consensus 150 ~~l~~~l~~~-~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 227 (997)
....++.... ...-+.|+|+.|+|||+|++++++.......-.. +|++. .++...+...+... .
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~---- 183 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K---- 183 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----c----
Confidence 3444444322 2456999999999999999999998765321122 66643 34556665555321 1
Q ss_pred HHHHHHHHHhcCCcEEEEEccccccc---cc-cccccccCC-CCCceEEEEeeC-Chh--------hhhcCCC-eeEEcC
Q 038902 228 RATLAKRLRERTKKVLIILDDVREKI---NL-AVSGIPYGE-ERKRCKVIVTSR-RLD--------VCSKMSD-VTVQIE 292 (997)
Q Consensus 228 ~~~l~~~l~~~~k~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr-~~~--------v~~~~~~-~~~~l~ 292 (997)
...+.+.+.. +.-+|++||+.... .+ ..+...+.. ...|..||+||. ... +..++.. ..++++
T Consensus 184 ~~~f~~~~~~--~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~ 261 (440)
T PRK14088 184 LNEFREKYRK--KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_pred HHHHHHHHHh--cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC
Confidence 1123333333 45689999997431 11 112111211 122446888875 322 2223333 588999
Q ss_pred CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 293 ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 293 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
+.+.+.-.+++++.+....-.--+++..-|++.+.|..-.
T Consensus 262 ~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 262 PPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence 9999999999988875333333456788888888875433
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00065 Score=73.43 Aligned_cols=192 Identities=11% Similarity=0.127 Sum_probs=110.9
Q ss_pred cccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhC-----------CCce---EEEEEccCCCHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIA-----------PHDK---AHVIVAESSDLR 205 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----------~f~~---~wv~v~~~~~~~ 205 (997)
+++|.+...+.+...+..+.+ ...-++|+.|+||+++|..+++..-... .+.+ .|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 678999999999999987764 7889999999999999999998763321 1122 333211000000
Q ss_pred HHHHHHHHHhCCCCc--hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh
Q 038902 206 RIQDKIAELLKFKIE--EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
.+-.+-+...+.... ..=.-+.++.+.+.+.. .+++-++|+|+++... ..+.+...+-...+..-|++|++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~ 164 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPE 164 (314)
T ss_pred ccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence 011111111110000 00001223345555544 3577788999987653 2334433332222333444555444
Q ss_pred hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 279 DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 279 ~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
.+...+.. ..+++.++++++..+.+.+........ .....++..++|.|..+..
T Consensus 165 ~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 165 SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIA 220 (314)
T ss_pred hCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHH
Confidence 45554444 799999999999999998875322111 1135788999999966544
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.1e-05 Score=95.92 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=89.9
Q ss_pred hcCceEEEcccCCCc--CCCC--CCCCCCccEEEccCCCCCCC-ChhHhhcCccccEEEecCcccCCCCccccccccCCE
Q 038902 496 LKEYKKISLMDSGIN--KLPD--EPMCPQLLTLFLQHNAFDKI-PPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRS 570 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~--~l~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~ 570 (997)
..++++|++.+...- ..+. +..+|.|++|.+.+-.+... ....+.++++|+.||+|+++++.+ ..+++|+||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 356777777653311 1111 12678888888887664332 345567788888888888888877 66788888888
Q ss_pred EEcCCCCccCCC---cccccCcccEEEecCCcccccC-------ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcE
Q 038902 571 LRAENTHLEKAP---LKKEFKELVILILRGSSIRELP-------KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEE 640 (997)
Q Consensus 571 L~L~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 640 (997)
|.+++=.+..-. .+.+|++|++||++.......+ +.-..|++||.||.+++..-..+-...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 888776665533 6777888888888875332221 111247778888877665333333332333344544
Q ss_pred EE
Q 038902 641 LY 642 (997)
Q Consensus 641 L~ 642 (997)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.002 Score=73.20 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=85.7
Q ss_pred cccccHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
+=.|.+.-.++|++++- +-+-+++..+||+|||||.+|+.++..... .| +-++|..-.|..+|-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kF--fRfSvGG~tDvAeIk------ 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KF--FRFSVGGMTDVAEIK------ 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ce--EEEeccccccHHhhc------
Confidence 44588888899988873 224679999999999999999999998754 23 344555444444441
Q ss_pred hCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEccccccc------cccccccccCCC-------------CCceEEEEe
Q 038902 215 LKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKI------NLAVSGIPYGEE-------------RKRCKVIVT 274 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~------~~~~l~~~~~~~-------------~~gs~iivT 274 (997)
|... ......-.++.+.|+. ...+=|+.+|.|+..- .-.++..-+.+. --=|+|++.
T Consensus 482 -GHRR--TYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 482 -GHRR--TYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred -ccce--eeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 1110 0011111233444444 3467788999986531 001111111100 112566543
Q ss_pred eCCh-------hhhhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 275 SRRL-------DVCSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 275 tr~~-------~v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
..-. ...++| .+|++.+...+|=.++-.++.
T Consensus 559 cTAN~idtIP~pLlDRM--EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM--EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhh--heeeccCccHHHHHHHHHHhh
Confidence 3211 122222 789999999888776655554
No 153
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.71 E-value=0.00078 Score=70.30 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=109.2
Q ss_pred HHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHHHHhhhC-----CCceEEEEEccCCCHHHHHHHHHHHhCCCCc
Q 038902 149 LNSIMKLLKDD---KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-----PHDKAHVIVAESSDLRRIQDKIAELLKFKIE 220 (997)
Q Consensus 149 ~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 220 (997)
++++-+.+... ...-+.|||..|+|||++++++........ .+..+.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 44444444432 356789999999999999999998764321 1223566667889999999999999998764
Q ss_pred h-hhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCCceEEEEeeCC--------hhhhh
Q 038902 221 E-EDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPYGEERKRCKVIVTSRR--------LDVCS 282 (997)
Q Consensus 221 ~-~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~iivTtr~--------~~v~~ 282 (997)
. .+.......+.+.++. -+-=+||+|++.+.-. .+.+ ..+...-.-+-|.|-|++ .+.+.
T Consensus 126 ~~~~~~~~~~~~~~llr~-~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRR-LGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred CCCCHHHHHHHHHHHHHH-cCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 3 3344444555566665 4556788999976411 1111 122223334566777764 33444
Q ss_pred cCCCeeEEcCCCCHH-HHHHHHHHHcC----CCC-ChhhHHHHHHHHHHhCCchh
Q 038902 283 KMSDVTVQIEELGEE-DRLKLFKQIAR----LPD-SEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 283 ~~~~~~~~l~~L~~~-~~~~lf~~~~~----~~~-~~~~~~~~~~i~~~~~glPl 331 (997)
++. .+.++.-..+ +...|+..... ..+ .-...++++.|...++|+.=
T Consensus 204 RF~--~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 204 RFE--PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred ccC--CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 443 3444443333 44445433322 222 33456789999999999863
No 154
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.0016 Score=79.93 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=82.3
Q ss_pred cccccHHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
+.+|.+..++++.+++.. ....++.++|++|+|||++|+.+++.... +|- -++++...+..++...-...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~--~~~--~i~~~~~~~~~~i~g~~~~~ 396 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR--KFV--RFSLGGVRDEAEIRGHRRTY 396 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC--CeE--EEeCCCcccHHHHcCCCCce
Confidence 577888888888886631 13458999999999999999999998753 332 23333322332221100000
Q ss_pred hCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc------ccccccc--------cCCC-------CCceEEEE
Q 038902 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN------LAVSGIP--------YGEE-------RKRCKVIV 273 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~------~~~l~~~--------~~~~-------~~gs~iiv 273 (997)
.+ .......+.+.+.- ..+-+|+||+++.... ...+... |.+. ..+..+|.
T Consensus 397 ~g-----~~~g~i~~~l~~~~---~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 397 VG-----AMPGRIIQGLKKAK---TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred eC-----CCCchHHHHHHHhC---cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 00 01111122222221 1334789999866521 0111110 1111 12344566
Q ss_pred eeCChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHc
Q 038902 274 TSRRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 274 Ttr~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~ 307 (997)
||.... +...+-. ..+++.+++.++-.+++++..
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 665542 1111111 688999999998888876654
No 155
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.69 E-value=9.2e-06 Score=95.56 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=73.7
Q ss_pred hccccceecCCCCCCcccc-cccccCCCCccEEEEecc-C-Ccccc--chhhHHHhcCCcEEeeecccccceeeeccccc
Q 038902 733 LEKTEDLTLTRSRDLEDIG-AIEVQGLTALMTMHLRAC-S-LQRIF--RSSFYARARNAEELNVEYCYSMKEVFCLEENE 807 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~-~~~~~~l~~L~~L~L~~~-~-l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 807 (997)
+++|+.|.+.+|..+.+.+ ......++.|+.|+++++ . ..... .......+++|+.|+++.|..+++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------ 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence 4666666666666655532 123334666777777652 2 11111 11233455677777777666543331
Q ss_pred hhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC---cchhh
Q 038902 808 IEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC---DRLEE 884 (997)
Q Consensus 808 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c---~~l~~ 884 (997)
...-...+|+|+.|.+.+|..+++-. -......+++|++|+++.|..+++........++++|+.|.+..+ ..++.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 11122336677777766666543311 011123566677777777776655322333455665555444433 34554
Q ss_pred h
Q 038902 885 I 885 (997)
Q Consensus 885 l 885 (997)
+
T Consensus 340 ~ 340 (482)
T KOG1947|consen 340 L 340 (482)
T ss_pred H
Confidence 3
No 156
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.69 E-value=0.00083 Score=81.58 Aligned_cols=154 Identities=17% Similarity=0.239 Sum_probs=86.4
Q ss_pred cccccHHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
+.+|.+..+++|++++.. ....++.++|++|+||||+|+.++..... +| +-+..+...+..++...-...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~--~~i~~~~~~d~~~i~g~~~~~ 398 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KY--VRMALGGVRDEAEIRGHRRTY 398 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE--EEEEcCCCCCHHHhccchhcc
Confidence 578999999999988742 23568999999999999999999987643 23 233334333333332211111
Q ss_pred hCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEcccccccc------ccccccccCC---------------CCCceEEE
Q 038902 215 LKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKIN------LAVSGIPYGE---------------ERKRCKVI 272 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~------~~~l~~~~~~---------------~~~gs~ii 272 (997)
.+.. .... .+.+.. ...+-+|+||+++.... .+.+...+.. .-...-+|
T Consensus 399 ~g~~-----~G~~----~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 399 IGSM-----PGKL----IQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred CCCC-----CcHH----HHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1110 0111 222222 11344788999865421 1112111111 11334456
Q ss_pred EeeCChhhhhcCCC--eeEEcCCCCHHHHHHHHHHHc
Q 038902 273 VTSRRLDVCSKMSD--VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 273 vTtr~~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~ 307 (997)
.|+++..+...+-. .++++.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 66665544332222 688999999999888877665
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=3.1e-06 Score=75.30 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=58.0
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEe
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILIL 595 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L 595 (997)
...+|...++++|.+...++.+-..++.+..|++++|.|+++|..+..++.|+.|+++.|.+...| .+..+.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 345566666667666666666656666667777777777777766666777777777766666666 4555666666666
Q ss_pred cCCcccccCcc
Q 038902 596 RGSSIRELPKG 606 (997)
Q Consensus 596 ~~~~l~~lp~~ 606 (997)
.+|.+..+|-.
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 66655555543
No 158
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=1e-06 Score=98.76 Aligned_cols=97 Identities=25% Similarity=0.321 Sum_probs=47.9
Q ss_pred ccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCcc
Q 038902 545 INFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIF 623 (997)
Q Consensus 545 L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 623 (997)
|.+.++++|.+..+..++.-++.|+.|||+.|.+++...+..|++|++|||++|.+..+|.- ...+ +|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~- 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA- 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-
Confidence 44445555555544445555555555555555555554555555555555555555544421 1122 25555555554
Q ss_pred CCCCChHHhhcCCCCcEEEeec
Q 038902 624 LQGIPPNIISKLCQLEELYIGN 645 (997)
Q Consensus 624 ~~~~~~~~l~~l~~L~~L~l~~ 645 (997)
+.++-. +.+|.+|+.|+++.
T Consensus 244 l~tL~g--ie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 244 LTTLRG--IENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhh--HHhhhhhhccchhH
Confidence 333332 44555555555544
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.64 E-value=0.00012 Score=80.99 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=72.2
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCC
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKI 219 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~ 219 (997)
++++.+..++.+...+... +.|.++|++|+|||++|+++++.......|+. .||.++..++..+++..+.-. +...
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe
Confidence 5677888899999888643 57888999999999999999998876567777 899999888777765432110 1000
Q ss_pred chhhHHHH-HHHHHHHHHhcCCcEEEEEcccccc
Q 038902 220 EEEDELQR-RATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 220 ~~~~~~~~-~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.-.... .+.+.+...+..+++++|+|++...
T Consensus 253 --~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 --RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred --EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000111 1112222222347899999999765
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.00031 Score=82.19 Aligned_cols=201 Identities=14% Similarity=0.180 Sum_probs=105.4
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccC-----CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEc---cCC
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDD-----KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVA---ESS 202 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~---~~~ 202 (997)
++++...+.+++|.+..++++..|+... ..+++.|+|++|+||||+++.++..... +. -|++-. ...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----QVQEWSNPTLPDFQK 151 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----HHHHHhhhhhhcccc
Confidence 3445556669999999999999998642 3467999999999999999999987642 22 332211 001
Q ss_pred CHHHHHHHHHHHhCCCCch-hhHHHHHHHHHHHHH-----hcCCcEEEEEccccccc-----ccccccc-ccCCCCCceE
Q 038902 203 DLRRIQDKIAELLKFKIEE-EDELQRRATLAKRLR-----ERTKKVLIILDDVREKI-----NLAVSGI-PYGEERKRCK 270 (997)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~-----~~~k~~LlvlDdv~~~~-----~~~~l~~-~~~~~~~gs~ 270 (997)
+...+...+..++...... ...........+.+. ..+++.+|++|++.+.. .+..+.. .+...+.-.-
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pL 231 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPL 231 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceE
Confidence 1111222233332211110 011111111111110 02477899999994431 1223322 1212222234
Q ss_pred EEEeeCC-------------------hhhhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCC----Ch---hhHHHHHHHHH
Q 038902 271 VIVTSRR-------------------LDVCSKMSDVTVQIEELGEEDRLKLFKQIARLPD----SE---AFEGAAKVIVK 324 (997)
Q Consensus 271 iivTtr~-------------------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~----~~---~~~~~~~~i~~ 324 (997)
|++||-+ +++....+...+.+.+++..+-.+.+.+.+..+. .. ...+....|+.
T Consensus 232 I~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~ 311 (637)
T TIGR00602 232 VFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ 311 (637)
T ss_pred EEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH
Confidence 4555522 1122222336789999999997777766664211 11 12356667777
Q ss_pred HhCCc-hhHHHHH
Q 038902 325 ACGSL-PNAIAIV 336 (997)
Q Consensus 325 ~~~gl-Plai~~~ 336 (997)
.++|- --||..+
T Consensus 312 ~s~GDiRsAIn~L 324 (637)
T TIGR00602 312 GCSGDIRSAINSL 324 (637)
T ss_pred hCCChHHHHHHHH
Confidence 77774 4444444
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.63 E-value=0.00075 Score=83.68 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=89.2
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce-EEEEEccCCCHHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK-AHVIVAESSDLRRIQDKIAE 213 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~wv~v~~~~~~~~~~~~i~~ 213 (997)
+..++||+.++.++++.|......-+.++|++|+|||++|+.++++...... .+. +|.- ++..+. .
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h
Confidence 3368999999999999987766667779999999999999999998643211 122 3321 111111 0
Q ss_pred HhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCCc-eEEEEeeCChhh---
Q 038902 214 LLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPYGEERKR-CKVIVTSRRLDV--- 280 (997)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~g-s~iivTtr~~~v--- 280 (997)
+.... .........+.+.+...+++.+|++|++..... ...+..+.. .+| -++|-+|...+.
T Consensus 243 --~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 --GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKY 317 (852)
T ss_pred --cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHH
Confidence 10101 112223333333443324689999999975421 111222222 223 345555544432
Q ss_pred -------hhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 281 -------CSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 281 -------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
..++ ..+.++..+.++..++++...
T Consensus 318 ~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRF--QPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHHH
Confidence 1122 567889899999999887654
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=4e-05 Score=91.10 Aligned_cols=127 Identities=18% Similarity=0.140 Sum_probs=87.4
Q ss_pred CCCccEEEccCCC--CCCCChhHhhcCccccEEEecCcccC--CCCccccccccCCEEEcCCCCccCCCcccccCcccEE
Q 038902 518 CPQLLTLFLQHNA--FDKIPPGFFEHMREINFLDLSYTNIS--TLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVIL 593 (997)
Q Consensus 518 ~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L 593 (997)
-.+|+.|+++|.. ..+.+...-.-+|.|+.|.+++-.+. ++.....++++|+.||+++++++.+..+++|++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 4678888888865 22333333445889999999887654 3344456788999999999998888888899999999
Q ss_pred EecCCcccccC--ccccCCCCCcEEeccCCccCCCCChHH------hhcCCCCcEEEeec
Q 038902 594 ILRGSSIRELP--KGLERWINLKLLDLSNNIFLQGIPPNI------ISKLCQLEELYIGN 645 (997)
Q Consensus 594 ~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~------l~~l~~L~~L~l~~ 645 (997)
.+++-.+..-. ..+.+|++|++||+|....... +..+ ...||+|+.|+.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCC
Confidence 88876665322 4567888999999887653322 2110 12356666666654
No 163
>PRK06620 hypothetical protein; Validated
Probab=97.60 E-value=0.00018 Score=73.17 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
+.+.|+|+.|+|||+|++.+++.... .++. ..+. .. +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~-------------------~~--------~~~~---~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFF-------------------NE--------EILE---KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhh-------------------ch--------hHHh---cC
Confidence 66899999999999999998775431 1111 0000 00 1112 33
Q ss_pred EEEEEccccccccccccccccC-CCCCceEEEEeeCChh-------hhhcCCC-eeEEcCCCCHHHHHHHHHHHcCCCCC
Q 038902 242 VLIILDDVREKINLAVSGIPYG-EERKRCKVIVTSRRLD-------VCSKMSD-VTVQIEELGEEDRLKLFKQIARLPDS 312 (997)
Q Consensus 242 ~LlvlDdv~~~~~~~~l~~~~~-~~~~gs~iivTtr~~~-------v~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~ 312 (997)
-++++||+....+. .+...+. -...|..||+|++... ...++.. -+++++++++++-..++++.+....-
T Consensus 87 d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 87 NAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred CEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 56888999743221 1111111 0134668899887432 2233333 58999999999988888777642222
Q ss_pred hhhHHHHHHHHHHhCCchh
Q 038902 313 EAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 313 ~~~~~~~~~i~~~~~glPl 331 (997)
.--+++..-|++.+.|.--
T Consensus 166 ~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYS 184 (214)
T ss_pred CCCHHHHHHHHHHccCCHH
Confidence 2335577777777777543
No 164
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.59 E-value=0.00051 Score=74.19 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=71.1
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCceEEEEEccC-CCHHHHHHHHHHHhCCCCchhh---
Q 038902 150 NSIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHDKAHVIVAES-SDLRRIQDKIAELLKFKIEEED--- 223 (997)
Q Consensus 150 ~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~--- 223 (997)
.++++.+.- +.-+.+.|+|..|+|||||++.+++...... .-.++|+.+.+. .++.++.+.+...+.....+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 446666642 3456789999999999999999999876532 112367677654 5788899999887765432111
Q ss_pred ---HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ---ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ---~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.......+.+++.+.+++++||+|++...
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 12234455666666799999999998654
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.58 E-value=0.0012 Score=81.40 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=88.2
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce--EEEEEccCCCHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK--AHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~--~wv~v~~~~~~~~~~~~i~ 212 (997)
+..++||+.++.++++.|......-+.++|++|+|||++|+.++.+...... .+. +.++++. ++.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a--- 247 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA--- 247 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh---
Confidence 3378999999999999987766667789999999999999999998743210 122 2322221 110
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCCc-eEEEEeeCChhhhh
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPYGEERKR-CKVIVTSRRLDVCS 282 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~g-s~iivTtr~~~v~~ 282 (997)
+.... .........+.+.+...+++.+|++|++..... ...+..+.. .+| -++|-+|...+...
T Consensus 248 ---g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ---GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQ 321 (857)
T ss_pred ---ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHH
Confidence 00101 111222333333333224789999999976521 112222221 223 35665555443211
Q ss_pred ------cCCC--eeEEcCCCCHHHHHHHHHHHc
Q 038902 283 ------KMSD--VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 283 ------~~~~--~~~~l~~L~~~~~~~lf~~~~ 307 (997)
.... ..+.+..-+.++..++++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111 456677778899988886554
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.00012 Score=70.26 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcccc-ccccCCEEEcCCCCccCCC---cccccCcccEEEecC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIE-CLVKLRSLRAENTHLEKAP---LKKEFKELVILILRG 597 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~lp---~~~~l~~L~~L~L~~ 597 (997)
..++|+.|.+..++. |..++.|..|.+++|.|+.+...+. .+++|..|.|.+|++..+. .+..+++|++|.+-+
T Consensus 45 d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 334444444333322 3344444444444444444433332 2334455555554443332 344445555555555
Q ss_pred CcccccC----ccccCCCCCcEEeccC
Q 038902 598 SSIRELP----KGLERWINLKLLDLSN 620 (997)
Q Consensus 598 ~~l~~lp----~~~~~l~~L~~L~l~~ 620 (997)
|.+...+ --+..+++|++||+.+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 5444322 1244666677776654
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.58 E-value=0.0064 Score=67.95 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=93.5
Q ss_pred cccccHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLK----D---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++.... .| +.+..+ .+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f--i~i~~s------~l 215 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF--IRVVGS------EF 215 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE--EEEehH------HH
Confidence 67888888888776552 1 23577899999999999999999987543 22 222211 11
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc------------c----ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs 269 (997)
... .++ ... .....+...... ..+.+|++|+++... . +..+...+. ....+.
T Consensus 216 ~~k---~~g-----e~~-~~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 216 VQK---YLG-----EGP-RMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHH---hcc-----hhH-HHHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 111 111 011 111222222222 478999999986431 0 111111111 123456
Q ss_pred EEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIARLPD---SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~i~~~~~glP 330 (997)
.||.||...+.... . +. ..++++.-+.++..++|+.+..... ..+ ...+++...|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 78888886553321 1 12 6788998888888888887664222 222 345566666653
No 168
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00011 Score=70.41 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=42.6
Q ss_pred ceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC--ccccccccCCEEEcCCC
Q 038902 499 YKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP--GSIECLVKLRSLRAENT 576 (997)
Q Consensus 499 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~l~~l~~L~~L~L~~~ 576 (997)
...+++.+|.+..++....++.|.+|.+.+|.++.+.+..-..+++|.+|.+.+|+|.++. .-+..|+.|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3334444444444444444444444444444444444444334444444444444444321 12333444444444444
Q ss_pred CccCCC-----cccccCcccEEEecC
Q 038902 577 HLEKAP-----LKKEFKELVILILRG 597 (997)
Q Consensus 577 ~l~~lp-----~~~~l~~L~~L~L~~ 597 (997)
.++..+ -+..+++|++||+.+
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhh
Confidence 443322 234444444444443
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.004 Score=62.63 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=103.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEc-cCCCHHHHHHHHHHHhCCCCchhhHH----HHHHHHH
Q 038902 158 DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVA-ESSDLRRIQDKIAELLKFKIEEEDEL----QRRATLA 232 (997)
Q Consensus 158 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l~ 232 (997)
.++-+++.++|.-|.|||++.++....... -+.+-+.+. .......+...|...+..+ +..... .....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHH
Confidence 345679999999999999999966554432 223223333 4467788888888888762 222222 2222333
Q ss_pred HHHHhcCCc-EEEEEcccccc--ccccccccccC---CCCCceEEEEeeCCh-------hhhhcCCC--e-eEEcCCCCH
Q 038902 233 KRLRERTKK-VLIILDDVREK--INLAVSGIPYG---EERKRCKVIVTSRRL-------DVCSKMSD--V-TVQIEELGE 296 (997)
Q Consensus 233 ~~l~~~~k~-~LlvlDdv~~~--~~~~~l~~~~~---~~~~gs~iivTtr~~-------~v~~~~~~--~-~~~l~~L~~ 296 (997)
...+ +++| ..+++||..+. +..+.+..-.. .+..--+|+..-..+ .+...... . .|.+.|++.
T Consensus 124 al~~-~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVK-KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHH-hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 4677 99999998664 22332221111 111111233322211 11111111 3 399999999
Q ss_pred HHHHHHHHHHcC---CCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 297 EDRLKLFKQIAR---LPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 297 ~~~~~lf~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
++...+++.+.. ..++-..++....|..+..|.|.+|..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 999988887764 23333345567889999999999998765
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.57 E-value=0.00069 Score=77.19 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=89.6
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCC---Cce-EEEEEccCCC
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP---HDK-AHVIVAESSD 203 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~-~wv~v~~~~~ 203 (997)
++.|.+.+++++.+.+.- ...+-+.++|++|+|||++|+++++....... ... .++++...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 677899998888776531 13566899999999999999999998754211 122 45554432
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc---------c-----ccccccccCC--CCC
Q 038902 204 LRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI---------N-----LAVSGIPYGE--ERK 267 (997)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~---------~-----~~~l~~~~~~--~~~ 267 (997)
++.... .+. .........+..++... .+++++|++|+++... + ...+...+.. ...
T Consensus 261 --eLl~ky---vGe--te~~ir~iF~~Ar~~a~-~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 261 --ELLNKY---VGE--TERQIRLIFQRAREKAS-DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred --hhcccc---cch--HHHHHHHHHHHHHHHhh-cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 111100 000 00001111222222222 2578999999997531 0 1122122211 123
Q ss_pred ceEEEEeeCChhhhh-c-CC--C--eeEEcCCCCHHHHHHHHHHHcC
Q 038902 268 RCKVIVTSRRLDVCS-K-MS--D--VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 268 gs~iivTtr~~~v~~-~-~~--~--~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
+..||.||...+... . .. . ..++++..+.++..++|+++..
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 556677776554332 1 11 1 5689999999999999998874
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0019 Score=70.23 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCC--------------------ceEEEEEccCCCHHHHHHHHHHHhCCCCc
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPH--------------------DKAHVIVAESSDLRRIQDKIAELLKFKIE 220 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--------------------~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 220 (997)
...+.++|+.|+||||+|+.++...-...+. |..|+.-.... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~-----------------~ 84 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD-----------------K 84 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC-----------------C
Confidence 4568899999999999999999886432111 11222110000 0
Q ss_pred hhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh-hhhhcCCC--eeEEcC
Q 038902 221 EEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD--VTVQIE 292 (997)
Q Consensus 221 ~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~--~~~~l~ 292 (997)
.-.. +.+..+.+.+.. .+++-++|+|+++.. ...+.+...+-.-..++.+|+||.+. .+...... ..+.+.
T Consensus 85 ~i~i-d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 85 TIKV-DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCCH-HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 0011 112223333322 234445567999875 33444444443333466777777665 44444333 789999
Q ss_pred CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 293 ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 293 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
+++.+++.+.+....... ..+.+..++..++|.|..+..+
T Consensus 164 ~~~~~~~~~~L~~~~~~~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPES----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccC----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999887764211 2234567788999999765544
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.00025 Score=66.56 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=41.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEE
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVL 243 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~L 243 (997)
|.|+|+.|+||||+|+.+++... +..+.++.+...+ ........... .+.+......++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~--------------~~~~~~~~~i~-~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELIS--------------SYAGDSEQKIR-DFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHT--------------SSTTHHHHHHH-HHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----ccccccccccccc--------------ccccccccccc-ccccccccccccee
Confidence 57899999999999999999874 2224444332110 01111222222 22223333123899
Q ss_pred EEEcccccc
Q 038902 244 IILDDVREK 252 (997)
Q Consensus 244 lvlDdv~~~ 252 (997)
|++||++..
T Consensus 62 l~iDe~d~l 70 (132)
T PF00004_consen 62 LFIDEIDKL 70 (132)
T ss_dssp EEEETGGGT
T ss_pred eeeccchhc
Confidence 999999764
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00079 Score=81.05 Aligned_cols=151 Identities=21% Similarity=0.283 Sum_probs=89.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-C---Cce-EEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-P---HDK-AHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~-~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.++||+.++.++++.|......-+.++|++|+|||++|+.+++...... + .++ +|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 5899999999999988765455667899999999999999998753321 2 233 4421 11111 11
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc----------cccccccccCCCCCceEEEEeeCChhh-----
Q 038902 216 KFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI----------NLAVSGIPYGEERKRCKVIVTSRRLDV----- 280 (997)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtr~~~v----- 280 (997)
+... ..........+.+.+.. .++.+|++|++.... +...+..++.. ...-+||-+|...+.
T Consensus 256 G~~~-~Ge~e~rl~~l~~~l~~-~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 256 GTKY-RGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred ccch-hhhHHHHHHHHHHHHHh-cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhh
Confidence 1111 11222233334444443 367899999997531 11112222222 223455555554332
Q ss_pred -----hhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 281 -----CSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 281 -----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
..++ ..+.++..+.++..++++...
T Consensus 333 ~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRF--QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhC--cEEEeCCCCHHHHHHHHHHHH
Confidence 2222 679999999999999988654
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=1.2e-05 Score=71.69 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=77.6
Q ss_pred CccEEEccCCCCCCCCh--hHhhcCccccEEEecCcccCCCCccccc-cccCCEEEcCCCCccCCC-cccccCcccEEEe
Q 038902 520 QLLTLFLQHNAFDKIPP--GFFEHMREINFLDLSYTNISTLPGSIEC-LVKLRSLRAENTHLEKAP-LKKEFKELVILIL 595 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~~l~~-l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L 595 (997)
.+..++|++|.+..+.. ..+....+|...++++|.++.+|..+.. .+.+.+|++.+|.++++| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455666666543332 2345567777788888888888776643 457888888888888888 7778888888888
Q ss_pred cCCcccccCccccCCCCCcEEeccCCccCCCCChH
Q 038902 596 RGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPN 630 (997)
Q Consensus 596 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 630 (997)
+.|.+...|..+..|.+|-.|+..++. ...+|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888888777777778888888877776 4455544
No 175
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.53 E-value=0.00064 Score=66.38 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=46.0
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++...+.++||-+..++++.-...+++..-+.|.||+|+||||-+..+++.+-
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 344455558999999999998888888999999999999999999999998753
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00047 Score=77.91 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=121.3
Q ss_pred HhcCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 131 MASRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
..+++...+.+++|.+.-...|...+..+.+ .--...|+-|+||||+|+-++.-+-... | ...+.++.=...+
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~-~~~ePC~~C~~Ck 80 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-----G-PTAEPCGKCISCK 80 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-----C-CCCCcchhhhhhH
Confidence 4456667777889999999999988876643 3456799999999999999998764321 1 1111222222223
Q ss_pred HHHHHhCCCCc--hhhHHHHHHHHHHHHHh------cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh-
Q 038902 210 KIAELLKFKIE--EEDELQRRATLAKRLRE------RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL- 278 (997)
Q Consensus 210 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~~------~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~- 278 (997)
.|...-..+.- +......++.+++...+ .++-=+.|+|+|... ..|.++...+-.-....+.|+.|++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 33332111110 11111233334433333 456668889999875 45666655543333455666666654
Q ss_pred hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 279 DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 279 ~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
.+....-+ ..|.++.++.++-...+...+..+.-...++....|++..+|-.
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 34433322 78999999999999999998877666667777888888888853
No 177
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00036 Score=76.28 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=30.7
Q ss_pred CccccEEEecCcccCCCCccccccccCCEEEcCCC-CccCCC-cccccCcccEEEecCC-cccccCc
Q 038902 542 MREINFLDLSYTNISTLPGSIECLVKLRSLRAENT-HLEKAP-LKKEFKELVILILRGS-SIRELPK 605 (997)
Q Consensus 542 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~-~l~~lp-~~~~l~~L~~L~L~~~-~l~~lp~ 605 (997)
+++++.|++++|.++.+|. -..+|+.|.+++| .++.+| .+ ..+|++|++++| ++..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 4556666666665555551 1224666666554 444445 22 245666666665 4555543
No 178
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=9.1e-05 Score=53.57 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=19.3
Q ss_pred cCCEEEcCCCCccCCCc-ccccCcccEEEecCCccccc
Q 038902 567 KLRSLRAENTHLEKAPL-KKEFKELVILILRGSSIREL 603 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp~-~~~l~~L~~L~L~~~~l~~l 603 (997)
+|++|++++|.++++|. +++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555553 55555555555555555443
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0068 Score=69.55 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
+=.|-++-.++|+++|- +-+-.++.+|||+|||||.|++.+++.... .| +-+.+..-.|..+|-.-=-..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R--kf--vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR--KF--VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC--CE--EEEecCccccHHHhccccccc
Confidence 44588888999998883 124579999999999999999999998765 34 344444444444432111111
Q ss_pred hCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEcccccccc------ccccccccCCC-------------CCceEEE--
Q 038902 215 LKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKIN------LAVSGIPYGEE-------------RKRCKVI-- 272 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~------~~~l~~~~~~~-------------~~gs~ii-- 272 (997)
+| + .-.++.+.++. ..++=+++||.++.... -.++..-+.+. --=|.|+
T Consensus 400 IG------a---mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 400 IG------A---MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cc------c---CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 11 0 11122223322 34778999999865411 11111111100 0124443
Q ss_pred EeeCChh-hhh-cCCC-eeEEcCCCCHHHHHHHHHHHc
Q 038902 273 VTSRRLD-VCS-KMSD-VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 273 vTtr~~~-v~~-~~~~-~~~~l~~L~~~~~~~lf~~~~ 307 (997)
-|..+-+ +.. .+.. .++++.+.+++|=.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444433 222 1222 789999999999888777665
No 180
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0014 Score=74.53 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
..-+.|+|+.|+|||+|++++++..... ....+++. ...+...+...+... ....+++.+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~---~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR---N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc---c
Confidence 3568899999999999999999988642 22225554 234444555554321 1122333333 4
Q ss_pred cEEEEEccccccccc----cccccccCC-CCCceEEEEeeCCh---------hhhhcCCC-eeEEcCCCCHHHHHHHHHH
Q 038902 241 KVLIILDDVREKINL----AVSGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VTVQIEELGEEDRLKLFKQ 305 (997)
Q Consensus 241 ~~LlvlDdv~~~~~~----~~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~~~l~~L~~~~~~~lf~~ 305 (997)
.-++++||+...... +.+...+.. ...|-.||+||... .+..++.. ..+++.+++.++-..++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 458888998664221 112222210 11345688888542 22334443 6889999999999999988
Q ss_pred HcCCCCChhhHHHHHHHHHHhCCc
Q 038902 306 IARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
.+......--+++..-|++.+.|.
T Consensus 283 k~~~~~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCC
Confidence 875333333345666677777654
No 181
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.0012 Score=76.11 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
..+.|+|..|+|||.|++++++...... .+..+++. ..++..++...+... ....+++++. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~---~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR---E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh---c
Confidence 4589999999999999999999876422 22235554 334444444443211 1223334444 3
Q ss_pred cEEEEEccccccc---ccc-ccccccCC-CCCceEEEEeeCCh---------hhhhcCCC-eeEEcCCCCHHHHHHHHHH
Q 038902 241 KVLIILDDVREKI---NLA-VSGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VTVQIEELGEEDRLKLFKQ 305 (997)
Q Consensus 241 ~~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~~~l~~L~~~~~~~lf~~ 305 (997)
-=+|+|||+.... .|. .+...+.. ...|..|||||+.. .+..++.. -++++...+.+.-.+++++
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 3578889996542 222 12122211 12245688888752 23344544 7889999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 306 IARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
++......--+++..-|++++.+..-.
T Consensus 458 ka~~r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 458 KAVQEQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence 886433333456777788877765433
No 182
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.48 E-value=0.0045 Score=70.62 Aligned_cols=197 Identities=17% Similarity=0.196 Sum_probs=126.3
Q ss_pred cccccHHHHHHHHHHhc----c-CCceEEEEEcCCCCcHHHHHHHHHHHHh------hhCCCceEEEEEccCCCHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK----D-DKVNIIGLQGPGGIGKSTLMEQLAKQID------TIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~------~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
.+-+|+.+..+|-+.+. + +....+-|.|-+|+|||..+..|.+.++ ....|+.+.|+.-+--...++..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 57799999999987774 2 2345899999999999999999998654 23468888888888788999999
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHH---hcCCcEEEEEcccccccc--ccccccccC-CCCCceEEEEeeCC------
Q 038902 210 KIAELLKFKIEEEDELQRRATLAKRLR---ERTKKVLIILDDVREKIN--LAVSGIPYG-EERKRCKVIVTSRR------ 277 (997)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~~k~~LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~iivTtr~------ 277 (997)
.|..++....... ......+..+.. ...+..++++|+++..-. -+-+...|. ...++||++|.+-.
T Consensus 477 ~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 477 KIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 9999986543322 222333444444 245789999999865421 112222233 35678887766532
Q ss_pred -----hhhhhcCCCeeEEcCCCCHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHhCCchhHHHHHHHH
Q 038902 278 -----LDVCSKMSDVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPNAIAIVAGA 339 (997)
Q Consensus 278 -----~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~i~~~~~glPlai~~~~~~ 339 (997)
..|+.+++-..+.+.+.++++-.+....+.... .+...+-++++|+.-.|-.-.|+.+.-++
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 124445555788888889888777776665421 12333334455555444444444444333
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00036 Score=66.32 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
+.+.|+|++|+||||+|+.++....... ...+.++.+........... ...................+.+.... .+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARK-LKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHh-cCC
Confidence 5789999999999999999999876532 12355555544332222211 11111111112222233344444443 234
Q ss_pred EEEEEcccccccc
Q 038902 242 VLIILDDVREKIN 254 (997)
Q Consensus 242 ~LlvlDdv~~~~~ 254 (997)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987644
No 184
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.47 E-value=0.0012 Score=74.20 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=86.4
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|.+.+++++.+.+.- ...+-+.++|++|+|||++|+++++.... .| +.+..+. +
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f--i~V~~se------L 253 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF--LRVVGSE------L 253 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE--EEEecch------h
Confidence 677888888888776631 13457889999999999999999997643 23 2222111 1
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs 269 (997)
.... .+ .. ......+.+... .+.+.+|+||+++.... +..+...+. ....+.
T Consensus 254 ~~k~---~G-----e~-~~~vr~lF~~A~-~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 254 IQKY---LG-----DG-PKLVRELFRVAE-ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhhh---cc-----hH-HHHHHHHHHHHH-hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1110 11 01 111122222222 24788999999864310 001111111 123356
Q ss_pred EEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHcC
Q 038902 270 KVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
+||.||...+.... . +. ..++++..+.++..++|+.++.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 78888886554332 1 12 6889999999999999998775
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=6.4e-05 Score=75.98 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCCccEEEccCCCCCCCC--hhHhhcCccccEEEecCcccCCCCccc-cccccCCEEEcCCCCcc--CCC-cccccCcc
Q 038902 517 MCPQLLTLFLQHNAFDKIP--PGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRAENTHLE--KAP-LKKEFKEL 590 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~l~--~lp-~~~~l~~L 590 (997)
.++.++.|++.+|.++... ..++.++++|++|+++.|.+...-..+ ..+.+|++|-|.++.+. ... .+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5677777777777765543 245567777777777777655222222 34567777777776432 232 55566666
Q ss_pred cEEEecCCccc
Q 038902 591 VILILRGSSIR 601 (997)
Q Consensus 591 ~~L~L~~~~l~ 601 (997)
+.|.++.|++.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 66666655443
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0015 Score=73.32 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=85.5
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhh
Q 038902 144 HSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEED 223 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 223 (997)
.|..-+.++.+.+..... ++.|.|+-++||||+++.+....... .+.+...+... +
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~-------------------~ 76 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRL-------------------D 76 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhc-------------------c
Confidence 445566677776654433 99999999999999997777665432 23333221110 0
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhh-----hcCCC--eeEEcCCCC
Q 038902 224 ELQRRATLAKRLRE-RTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVC-----SKMSD--VTVQIEELG 295 (997)
Q Consensus 224 ~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-----~~~~~--~~~~l~~L~ 295 (997)
.....+.++.+... ..++.+|+||.|....+|......+.+.++. +|++|+-+.... ..... ..+++.||+
T Consensus 77 ~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 77 RIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred hhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 01111222222222 1167899999999999998766666666655 888888765433 23333 788999999
Q ss_pred HHHHHHHH
Q 038902 296 EEDRLKLF 303 (997)
Q Consensus 296 ~~~~~~lf 303 (997)
-.|-..+-
T Consensus 156 F~Efl~~~ 163 (398)
T COG1373 156 FREFLKLK 163 (398)
T ss_pred HHHHHhhc
Confidence 99987653
No 187
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.39 E-value=0.00068 Score=79.08 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=47.3
Q ss_pred HHhcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 130 LMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 130 ~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.++++...+.+++|++..++.+...+.......+.|+|+.|+|||++|+.+++..+
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 355567777778999999999999887666667788999999999999999987643
No 188
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.0011 Score=69.67 Aligned_cols=105 Identities=20% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 038902 154 KLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAK 233 (997)
Q Consensus 154 ~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (997)
+|+. +..-+.++|++|+|||.||.++++..... .+...++. ..+++..+...... . ......+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~------~~~L~~~l~~a~~~----~----~~~~~l~ 163 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTR------TTDLVQKLQVARRE----L----QLESAIA 163 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeee------HHHHHHHHHHHHhC----C----cHHHHHH
Confidence 4654 33569999999999999999999887542 23335554 34555555433110 1 1112233
Q ss_pred HHHhcCCcEEEEEcccccc--ccc-c-ccccccCCCCCceEEEEeeCCh
Q 038902 234 RLRERTKKVLIILDDVREK--INL-A-VSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~--~~~-~-~l~~~~~~~~~gs~iivTtr~~ 278 (997)
.+. +-=|||+||+... ..+ . .+...+.....+..+||||+..
T Consensus 164 ~l~---~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 164 KLD---KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHh---cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 343 4559999999543 111 1 1212222111123588888754
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.0076 Score=60.98 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=59.0
Q ss_pred cccccHHHHHHHHHHh----ccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhC
Q 038902 141 DLTHSSKALNSIMKLL----KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLK 216 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~ 216 (997)
.++|.+.+++.|++-. .+....-+.+||..|+|||++++++.+....+. ...+-| .+.
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-LRlIev--~k~--------------- 89 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG-LRLIEV--SKE--------------- 89 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-ceEEEE--CHH---------------
Confidence 7899999988887644 345677889999999999999999999887632 111222 211
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccc
Q 038902 217 FKIEEEDELQRRATLAKRLRERTKKVLIILDDVR 250 (997)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~ 250 (997)
.......+.+.+++++.||+|++||+.
T Consensus 90 -------~L~~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 90 -------DLGDLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred -------HhccHHHHHHHHhcCCCCEEEEecCCC
Confidence 112223344455555699999999985
No 190
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.00013 Score=71.17 Aligned_cols=34 Identities=38% Similarity=0.452 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCce-EE
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDK-AH 195 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~-~w 195 (997)
+.|.|+|++|+||||||+.+++..... .+||. +|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987653 45776 65
No 191
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.31 E-value=0.017 Score=71.56 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=37.1
Q ss_pred cccccHHHHHHHHHHhcc--------C-CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD--------D-KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--------~-~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++...
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999998888877742 1 135788999999999999999998763
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0013 Score=67.33 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEE
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVI 197 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~ 197 (997)
.+.+|......++.++.+. ..|.+.|++|+|||+||.+++.+.-....|+.+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 4678888888899888664 599999999999999999999863322356664443
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.24 E-value=0.0047 Score=72.08 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
.+-+.++|++|+|||++|+.+++.... +| +.++. .++.... .+. ........+..... ..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~--~~----~~i~~----~~~~~~~---~g~-----~~~~l~~~f~~a~~--~~ 147 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGV--PF----FSISG----SDFVEMF---VGV-----GASRVRDLFEQAKK--NA 147 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC--Ce----eeccH----HHHHHHH---hcc-----cHHHHHHHHHHHHh--cC
Confidence 456889999999999999999987543 22 22221 1111110 010 11111122222222 36
Q ss_pred cEEEEEcccccccc------------c----cccccccC--CCCCceEEEEeeCChhhhh----c-CCC-eeEEcCCCCH
Q 038902 241 KVLIILDDVREKIN------------L----AVSGIPYG--EERKRCKVIVTSRRLDVCS----K-MSD-VTVQIEELGE 296 (997)
Q Consensus 241 ~~LlvlDdv~~~~~------------~----~~l~~~~~--~~~~gs~iivTtr~~~v~~----~-~~~-~~~~l~~L~~ 296 (997)
+.+|++||++.... + ..+...+. ....+-.||.||...+..+ + ..- ..+.++..+.
T Consensus 148 p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 148 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCH
Confidence 78999999965310 0 11111111 1233456777776553222 1 112 6788998888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 297 EDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 297 ~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
++-.++|+.+........ ......+++.+.|.
T Consensus 228 ~~R~~il~~~l~~~~~~~-~~~l~~la~~t~G~ 259 (495)
T TIGR01241 228 KGREEILKVHAKNKKLAP-DVDLKAVARRTPGF 259 (495)
T ss_pred HHHHHHHHHHHhcCCCCc-chhHHHHHHhCCCC
Confidence 888888888775322111 11244788888874
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0071 Score=66.47 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh--c
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE--R 238 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~ 238 (997)
...+.+.|++|+|||+||..++..- .|..+-+. | ++++ -..++......+++...+ +
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKii-S----pe~m------------iG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS----DFPFVKII-S----PEDM------------IGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEe-C----hHHc------------cCccHHHHHHHHHHHHHHhhc
Confidence 4567789999999999999998653 45543332 1 1111 122444556666666665 3
Q ss_pred CCcEEEEEcccccccccccccccc---------------CCCCCceEEEEeeCChhhhhcCCC-----eeEEcCCCCH-H
Q 038902 239 TKKVLIILDDVREKINLAVSGIPY---------------GEERKRCKVIVTSRRLDVCSKMSD-----VTVQIEELGE-E 297 (997)
Q Consensus 239 ~k~~LlvlDdv~~~~~~~~l~~~~---------------~~~~~gs~iivTtr~~~v~~~~~~-----~~~~l~~L~~-~ 297 (997)
..--.||+||+....+|..++..| |+.+..--|+-||-...|...|+- ..|.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 466789999999888887665443 222333345556667778887764 6899999988 7
Q ss_pred HHHHHHHHHc-CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 298 DRLKLFKQIA-RLPDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 298 ~~~~lf~~~~-~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
+..+.++..- |. +...+.++.+.+.+| +-.+|+.+-..+
T Consensus 677 ~~~~vl~~~n~fs--d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 677 QLLEVLEELNIFS--DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHHHHHccCCC--cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7777776544 22 233444566666666 333344443333
No 195
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.0013 Score=68.73 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
...-+.++|++|+|||+||..+....... .+...++ +..++...+..... .. .....+ ..+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f~------t~~~l~~~l~~~~~----~~---~~~~~l-~~l~--- 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLFA------TAAQWVARLAAAHH----AG---RLQAEL-VKLG--- 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhhh------hHHHHHHHHHHHHh----cC---cHHHHH-HHhc---
Confidence 34578999999999999999999887542 2333332 33445554443211 00 111112 2222
Q ss_pred CcEEEEEccccccc--cc-c-ccccccCC-CCCceEEEEeeCCh
Q 038902 240 KKVLIILDDVREKI--NL-A-VSGIPYGE-ERKRCKVIVTSRRL 278 (997)
Q Consensus 240 k~~LlvlDdv~~~~--~~-~-~l~~~~~~-~~~gs~iivTtr~~ 278 (997)
+.-+||+||+.... .+ . .+...+.. ...++ +|+||+..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 55689999996431 11 1 12111211 12244 88888764
No 196
>CHL00176 ftsH cell division protein; Validated
Probab=97.21 E-value=0.0047 Score=73.14 Aligned_cols=167 Identities=18% Similarity=0.267 Sum_probs=90.6
Q ss_pred cccccHHHHHH---HHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 141 DLTHSSKALNS---IMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 141 ~~~gr~~~~~~---l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
++.|.++..++ +++++... ..+-|.++|++|+|||++|+++++.... + ++.++.. ++.
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p----~i~is~s----~f~ 253 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P----FFSISGS----EFV 253 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C----eeeccHH----HHH
Confidence 56666555444 44444332 2456899999999999999999987543 2 2322211 111
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc------------c----ccccccccC--CCCCceE
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG--EERKRCK 270 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs~ 270 (997)
... .+. ........+.+... ..+.+|++||++... . +..+...+. ....+-.
T Consensus 254 ~~~---~g~-----~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 254 EMF---VGV-----GAARVRDLFKKAKE--NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHh---hhh-----hHHHHHHHHHHHhc--CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 100 010 01111111222222 478999999996431 0 112211111 1234567
Q ss_pred EEEeeCChhhhhc-C---CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC
Q 038902 271 VIVTSRRLDVCSK-M---SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS 328 (997)
Q Consensus 271 iivTtr~~~v~~~-~---~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g 328 (997)
||.||...+..+. + +. ..+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCC
Confidence 7778876543331 1 11 57788888888888899888753221 112345678888887
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.012 Score=69.76 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=63.6
Q ss_pred cccccHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDK 210 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~ 210 (997)
.++|.+..++.+.+.+.- ..+.....+||.|||||.||++++..+-... +. +-++.|+-. =-.+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~----EkHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYM----EKHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHH----HHHH
Confidence 589999999999887732 2356788899999999999999998763210 23 544444321 1123
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCcE-EEEEcccccc
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKKV-LIILDDVREK 252 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~-LlvlDdv~~~ 252 (997)
+.+-+|.+...-.-++ -..+-+.+++ ++| +|.||+|...
T Consensus 566 VSrLIGaPPGYVGyee-GG~LTEaVRr--~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVGYEE-GGQLTEAVRR--KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCceecc-ccchhHhhhc--CCCeEEEechhhhc
Confidence 3344454432111111 2234455555 766 8999999654
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0067 Score=66.51 Aligned_cols=159 Identities=11% Similarity=0.108 Sum_probs=86.2
Q ss_pred ccc-cHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCC-
Q 038902 142 LTH-SSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFK- 218 (997)
Q Consensus 142 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~- 218 (997)
++| .+..++.+.+.+..+.+. ...++|+.|+||||+|+.+++..-.....+.. .+..-...+.+...-..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~------~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE------PCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC------CCCcCHHHHHHhcCCCCCE
Confidence 455 666778888888766654 56899999999999999999876432111000 000000000000000000
Q ss_pred ----Cc-hhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh-hhhhcCCC-
Q 038902 219 ----IE-EEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD- 286 (997)
Q Consensus 219 ----~~-~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~- 286 (997)
.+ ..-.-+.+..+.+.+.. .+++=++|+|++.... ..+.+...+-....++.+|++|.+. .+......
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 00 00001112222233321 2355678899987653 2344444444344566777777654 34443333
Q ss_pred -eeEEcCCCCHHHHHHHHHHH
Q 038902 287 -VTVQIEELGEEDRLKLFKQI 306 (997)
Q Consensus 287 -~~~~l~~L~~~~~~~lf~~~ 306 (997)
..+++.+++.++..+.+...
T Consensus 161 c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 161 CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceeeeCCCCCHHHHHHHHHHc
Confidence 78999999999998888653
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.01 Score=67.16 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++|+|+|++|+||||++..++.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887654
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0074 Score=61.59 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEE
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHV 196 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv 196 (997)
-.++|+|+.|+||||++..+...... .|++ +++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEE
Confidence 46789999999999999999987765 6777 544
No 201
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.14 E-value=0.033 Score=69.40 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=38.3
Q ss_pred cccccHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5889999999998887431 245788999999999999999998764
No 202
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0045 Score=61.77 Aligned_cols=168 Identities=17% Similarity=0.271 Sum_probs=100.6
Q ss_pred cccccHHHHH---HHHHHhccC------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALN---SIMKLLKDD------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~---~l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
+++|.++... -|+++|.+. .++-|..+|++|.|||-+|+++++..++ +| +.|. ..++ |
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~--l~vk------at~l---i 188 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL--LLVK------ATEL---I 188 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce--EEec------hHHH---H
Confidence 7889887764 356777653 4789999999999999999999998765 32 2221 1111 1
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--------------ccccccccccC--CCCCceEEEEee
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--------------INLAVSGIPYG--EERKRCKVIVTS 275 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--------------~~~~~l~~~~~--~~~~gs~iivTt 275 (997)
-...| +....++.+.+.-+. .-++.+++|.++-. +..+++...+. ..+.|...|-.|
T Consensus 189 GehVG------dgar~Ihely~rA~~-~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaT 261 (368)
T COG1223 189 GEHVG------DGARRIHELYERARK-AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAAT 261 (368)
T ss_pred HHHhh------hHHHHHHHHHHHHHh-cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeec
Confidence 11111 223344455544443 57899999987542 11122222221 234576677777
Q ss_pred CChhhhhc-CCC---eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 276 RRLDVCSK-MSD---VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 276 r~~~v~~~-~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
.+.+..+. ... .-|++..=+++|-.+++...+..-+-+- +.-.+.++.+.+|.
T Consensus 262 N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~ 318 (368)
T COG1223 262 NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGM 318 (368)
T ss_pred CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCC
Confidence 77665442 222 5777777788899999988885332111 11145566666665
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.016 Score=63.56 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC--CHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS--DLRRIQDKIAELLKFKIEEE-DELQRRATLAKRLR 236 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~ 236 (997)
-++++++|+.|+||||++..++........... ..+. ...+ ...+-++...+.++.+.... +..... .....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHH-HHHHHhc
Confidence 479999999999999999999988654222223 4343 3333 33444455566666654321 111222 2222333
Q ss_pred hcCCcEEEEEccccc
Q 038902 237 ERTKKVLIILDDVRE 251 (997)
Q Consensus 237 ~~~k~~LlvlDdv~~ 251 (997)
++=+|++|....
T Consensus 215 ---~~DlVLIDTaG~ 226 (374)
T PRK14722 215 ---NKHMVLIDTIGM 226 (374)
T ss_pred ---CCCEEEEcCCCC
Confidence 445566998743
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.07 E-value=0.012 Score=62.23 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 148 ALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 148 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
-++++..++..+ +.|.+.|++|+|||++|+.+++... ...+.++.....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC----CCEEEEeCCccCCHHHHh
Confidence 345555555443 4667899999999999999997442 223556655555555554
No 205
>PRK08116 hypothetical protein; Validated
Probab=97.06 E-value=0.0014 Score=69.36 Aligned_cols=102 Identities=22% Similarity=0.174 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
.-+.++|..|+|||.||.++++..... ....++++ ..+++..+......... .....+.+.+.+ -.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~--~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLVN--AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhcC--CC
Confidence 458899999999999999999998753 22225554 34455555544332111 112223344553 33
Q ss_pred EEEEEccccc--cccccc--cccccCC-CCCceEEEEeeCCh
Q 038902 242 VLIILDDVRE--KINLAV--SGIPYGE-ERKRCKVIVTSRRL 278 (997)
Q Consensus 242 ~LlvlDdv~~--~~~~~~--l~~~~~~-~~~gs~iivTtr~~ 278 (997)
||||||+.. ..+|.. +...+.. ...|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999943 233432 2222211 12455689999754
No 206
>PRK07261 topology modulation protein; Provisional
Probab=97.06 E-value=0.0019 Score=63.47 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.|+|++|+||||||+.+.....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987754
No 207
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.016 Score=61.04 Aligned_cols=175 Identities=21% Similarity=0.306 Sum_probs=101.1
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-++++++|.+.+.- +.++=|.++|++|.|||-||++|+++-.. .++.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvgS------ 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVGS------ 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc------eEEEeccH------
Confidence 566888888888877632 24677899999999999999999997643 23443322
Q ss_pred HHHHHHH-hCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccCCC--CCc
Q 038902 208 QDKIAEL-LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYGEE--RKR 268 (997)
Q Consensus 208 ~~~i~~~-l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~g 268 (997)
++++. +| ........+.+.-+. ..+..|++|.++.... .-++...+..+ ...
T Consensus 220 --ElVqKYiG------EGaRlVRelF~lAre-kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 --ELVQKYIG------EGARLVRELFELARE-KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHhc------cchHHHHHHHHHHhh-cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 12221 11 111222333333332 5788999998854300 11122222222 335
Q ss_pred eEEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHH-HHHHHHHcC---CCCChhhHHHHHHHHHHhCCch----hHHH
Q 038902 269 CKVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDR-LKLFKQIAR---LPDSEAFEGAAKVIVKACGSLP----NAIA 334 (997)
Q Consensus 269 s~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~-~~lf~~~~~---~~~~~~~~~~~~~i~~~~~glP----lai~ 334 (997)
-|||..|...++..- + +. ..++++ +++.++ .++|+-|+. ..+.-+++ .+++.+.|.- .|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHH
Confidence 699999987776541 2 22 577777 555555 457777775 23344444 4555565543 4566
Q ss_pred HHHHHHc
Q 038902 335 IVAGALR 341 (997)
Q Consensus 335 ~~~~~l~ 341 (997)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 6666664
No 208
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.05 E-value=0.003 Score=65.72 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC--------Cchh-----hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK--------IEEE-----DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~~-----~~ 224 (997)
+-+.++|+|..|+|||||++.+++..+.++ -+. +++-+.+. ..+.++..++...-..+ .++. ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~-~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAH-GGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999999887632 233 66766554 45566666665432211 1111 11
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRER-TKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~-~k~~LlvlDdv~~~ 252 (997)
....-.+.++++++ ++++|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 23445677888875 89999999998655
No 209
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.05 E-value=0.014 Score=62.47 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCceEEEEEc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDKAHVIVA 199 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~wv~v~ 199 (997)
+.++++|+|++|+||||++..++...... ..+....++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45799999999999999999999887653 23444555543
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.05 E-value=0.0044 Score=60.14 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhC-------------------CCceEEEEEccC--
Q 038902 144 HSSKALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIA-------------------PHDKAHVIVAES-- 201 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~wv~v~~~-- 201 (997)
|.++..+.|.+.+..+.+. .+.++|+.|+||+|+|..+++..-... +-|..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888777654 679999999999999999998753322 222344433222
Q ss_pred -CCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh
Q 038902 202 -SDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 202 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
..+.++. ++...+..... .+++=++|+||++.. +...++...+-.....+++|++|++.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 2232222 33333322110 236778899999875 34555555554445678888888876
Q ss_pred h-hhhcCCC--eeEEcCCCC
Q 038902 279 D-VCSKMSD--VTVQIEELG 295 (997)
Q Consensus 279 ~-v~~~~~~--~~~~l~~L~ 295 (997)
. +...... ..+.+.+++
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 4 3333222 566666553
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0031 Score=67.86 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=99.1
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce------EEEEEccCCCHHHHHHHHHHHhCCCC
Q 038902 147 KALNSIMKLLKDDKVN-IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK------AHVIVAESSDLRRIQDKIAELLKFKI 219 (997)
Q Consensus 147 ~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~------~wv~v~~~~~~~~~~~~i~~~l~~~~ 219 (997)
...+.+...+..+.+. .+.++|+.|+||+++|..+++..-......+ -|+....++|..-+... -..-+.+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcccccc
Confidence 4456667777666554 5889999999999999999987643211110 01111111111000000 00000000
Q ss_pred chhhHHHHHHHHHHHHHh---cCCcEEEEEcccccccc--ccccccccCCCCCceEEEEeeCC-hhhhhcCCC--eeEEc
Q 038902 220 EEEDELQRRATLAKRLRE---RTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIVTSRR-LDVCSKMSD--VTVQI 291 (997)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~--~~~~l 291 (997)
...-.-+.+..+.+.+.. .+++-++|+|+++.... -+++...+-.-..++.+|++|.+ ..+...+.. ..+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 000001222333333333 35677899999987632 33333333333346666666654 445554444 78899
Q ss_pred CCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 292 EELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 292 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
.+.+.+++.+.+... +. + ...+..++..++|.|+.+..+.
T Consensus 170 ~~~~~~~~~~~L~~~-~~-~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQ-GV-S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHc-CC-C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999888653 21 1 2235678999999998765443
No 212
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.04 E-value=0.00019 Score=71.74 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=113.0
Q ss_pred CCCccEEEccCCCCCCCCh----hHhhcCccccEEEecCcccC----CCC-------ccccccccCCEEEcCCCCccC-C
Q 038902 518 CPQLLTLFLQHNAFDKIPP----GFFEHMREINFLDLSYTNIS----TLP-------GSIECLVKLRSLRAENTHLEK-A 581 (997)
Q Consensus 518 ~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~i~----~lp-------~~l~~l~~L~~L~L~~~~l~~-l 581 (997)
+..+..+++++|.+..--. ..+.+-++|++.+++.-... ++| +.+-+|++|+..+|+.|.+.. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4455666666666432222 22345567777777654332 222 234567777777777775542 2
Q ss_pred C-----cccccCcccEEEecCCcccccC--------------ccccCCCCCcEEeccCCccCCCCChHH----hhcCCCC
Q 038902 582 P-----LKKEFKELVILILRGSSIRELP--------------KGLERWINLKLLDLSNNIFLQGIPPNI----ISKLCQL 638 (997)
Q Consensus 582 p-----~~~~l~~L~~L~L~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~l~~L 638 (997)
| .++.-..|.+|.+++|++..+. .-..+-+.|+......|. +...+... +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 2 3555667777777777654221 111233566666666665 33333321 1112456
Q ss_pred cEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccc----cccCCCCCCccEEEEEecCccccccccc
Q 038902 639 EELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLS----KQFDGPWGNLKRFRVQVNDDYWEIASTR 714 (997)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~L~ 714 (997)
+++.+..+.... .+ ...-....+..+.+|+.|++..|.++... ......|+.|..|.+.+|-..
T Consensus 188 k~vki~qNgIrp--eg---v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls------- 255 (388)
T COG5238 188 KEVKIQQNGIRP--EG---VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS------- 255 (388)
T ss_pred eeEEeeecCcCc--ch---hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc-------
Confidence 666654432110 00 00111234456667777777666433221 122233445555555444220
Q ss_pred eEEeecCc-ccchHHHH-HhhccccceecCCCCC----Cccccccc--ccCCCCccEEEEeccCCccc
Q 038902 715 SMHLKNIS-TPLADWVK-LLLEKTEDLTLTRSRD----LEDIGAIE--VQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 715 ~L~l~~~~-~~~~~~~~-~~l~~L~~L~L~~~~~----l~~~~~~~--~~~l~~L~~L~L~~~~l~~~ 774 (997)
... ..+-..+. ...++|..|....... +..+.... -.++|-|..|.+.+|.+...
T Consensus 256 -----~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 256 -----NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred -----cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 000 01111111 1135555555522211 22211111 23577888888888886654
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0042 Score=66.97 Aligned_cols=173 Identities=9% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCc---e------EEEEEccCCCHHHHHHHHHHHhCC
Q 038902 148 ALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHD---K------AHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 148 ~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~---~------~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
..+.+.+.+..+.+ .-..+.|+.|+||+++|+.++...-...... | -++....++|+..+... -+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~~~ 85 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI----DNK 85 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc----cCC
Confidence 44566666666554 5677899999999999999998764321110 0 01111111221111000 000
Q ss_pred CCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCCh-hhhhcCCC--eeE
Q 038902 218 KIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD--VTV 289 (997)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~--~~~ 289 (997)
.. . -+.+..+.+.+.. .+++=++|+|+++... ..+++...+-.-..++.+|++|.+. .+...... ..+
T Consensus 86 ~I---~-id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 86 DI---G-VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred CC---C-HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 00 1 1222233344432 3566788899998763 3444444443334566677666654 45544443 789
Q ss_pred EcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH
Q 038902 290 QIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 290 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai 333 (997)
.+.++++++..+.+....... ...+...+..++|.|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE-----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC-----hHHHHHHHHHcCCCHHHH
Confidence 999999999999888765221 113556788899999644
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.99 E-value=0.028 Score=60.62 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCC
Q 038902 144 HSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKI 219 (997)
Q Consensus 144 gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 219 (997)
+|....+...+++.. ...+-+.++|+.|+|||.||.++++..... .+...+++++ .++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~------~l~~~lk~~~~~~- 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFP------EFIRELKNSISDG- 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHH------HHHHHHHHHHhcC-
Confidence 455555555666642 134678999999999999999999998642 4445666543 4555555544211
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccc--ccccc-CCC-CCceEEEEeeCC
Q 038902 220 EEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAV--SGIPY-GEE-RKRCKVIVTSRR 277 (997)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~--l~~~~-~~~-~~gs~iivTtr~ 277 (997)
+ .....+.+. +-=||||||+... ..|.. +...+ ... ..+-.+|+||.-
T Consensus 207 ---~----~~~~l~~l~---~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ---S----VKEKIDAVK---EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---c----HHHHHHHhc---CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 112223333 6678999999643 44542 32222 211 234467888864
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.02 Score=64.78 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-hhCCCceEEEEEccCCCH--HHHHHHHHHHhCCCCch-hhHHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID-TIAPHDKAHVIVAESSDL--RRIQDKIAELLKFKIEE-EDELQRRATLAKRLR 236 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 236 (997)
.+++.++|++|+||||++..++.... ....+....++... +.. .+-+....+.++.+... .+..+. ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l----~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKEL----AKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhH----HHHHH
Confidence 46999999999999999999988775 32233345555432 221 12223334445544321 122222 22332
Q ss_pred hcCCcEEEEEccc
Q 038902 237 ERTKKVLIILDDV 249 (997)
Q Consensus 237 ~~~k~~LlvlDdv 249 (997)
.....=+|++|..
T Consensus 296 ~~~~~DlVlIDt~ 308 (424)
T PRK05703 296 QLRDCDVILIDTA 308 (424)
T ss_pred HhCCCCEEEEeCC
Confidence 2124567888865
No 216
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.021 Score=65.36 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=88.8
Q ss_pred cccccHHHHHHHHHHh---cc-------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLL---KD-------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l---~~-------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+++++.... +| +-++.+. +..
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~--~~l~~~~------l~~- 297 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL--LRLDVGK------LFG- 297 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE--EEEEhHH------hcc-
Confidence 5667665555444321 10 23567899999999999999999997643 22 2333221 111
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----c----------cccccccCCCCCceEEEEeeC
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----L----------AVSGIPYGEERKRCKVIVTSR 276 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----~----------~~l~~~~~~~~~gs~iivTtr 276 (997)
..-..++....+.+ +..+ ...+++|++|+++.... . ..+...+.....+--||.||.
T Consensus 298 -------~~vGese~~l~~~f-~~A~-~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 298 -------GIVGESESRMRQMI-RIAE-ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred -------cccChHHHHHHHHH-HHHH-hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 00111122222222 2222 24899999999974311 0 001111112233445667776
Q ss_pred Chhhhh-cC---CC--eeEEcCCCCHHHHHHHHHHHcCCCCChh-hHHHHHHHHHHhCCch
Q 038902 277 RLDVCS-KM---SD--VTVQIEELGEEDRLKLFKQIARLPDSEA-FEGAAKVIVKACGSLP 330 (997)
Q Consensus 277 ~~~v~~-~~---~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~i~~~~~glP 330 (997)
+.+... .+ +. ..+.++.-+.++-.++|+.+.....+.. ...-...+++.+.|.-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 554222 11 12 5778888888888889988775322111 1122456666776653
No 217
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.89 E-value=0.035 Score=61.26 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhh--CCCceEEEEEccCCC----HHHHHHHHHHHh
Q 038902 146 SKALNSIMKLLKD---DKVNIIGLQGPGGIGKSTLMEQLAKQIDTI--APHDKAHVIVAESSD----LRRIQDKIAELL 215 (997)
Q Consensus 146 ~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~wv~v~~~~~----~~~~~~~i~~~l 215 (997)
+...+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+..+.. ..+-.++++.....+ ...++.+|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4455666776754 467899999999999999999999998775 122225555443333 334444444443
No 218
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.88 E-value=0.00032 Score=70.09 Aligned_cols=152 Identities=27% Similarity=0.205 Sum_probs=73.4
Q ss_pred hcCccccEEEecCcccC-----CCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEecCCcccccCccccCCCCC
Q 038902 540 EHMREINFLDLSYTNIS-----TLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINL 613 (997)
Q Consensus 540 ~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L 613 (997)
.-+..+..++||+|.|. .+...+.+-.+|+..+++.-...... .+ ..++.-+-+.+-+|++|
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~------------~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDEL------------YSNLVMLLKALLKCPRL 94 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHH------------HHHHHHHHHHHhcCCcc
Confidence 34678888999999876 34455566677777777654221110 00 00011112233455556
Q ss_pred cEEeccCCccCCCCChH---HhhcCCCCcEEEeecCCCCcccccCCCCCC------CChHhhhCCCCCCEEEEEeccccc
Q 038902 614 KLLDLSNNIFLQGIPPN---IISKLCQLEELYIGNSFGNWELEETPNPKS------AAFKEVASLSRLTVLYIHINSTEV 684 (997)
Q Consensus 614 ~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~ 684 (997)
+..++|.|.+....|+. .++.-+.|++|.+++|.-....++ ... +.......-|.|++..+..|++..
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~---rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG---RIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchh---HHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 66666655544444432 133445566666655422111111 001 011223455677777777666543
Q ss_pred cccc----cCCCCCCccEEEEEecCc
Q 038902 685 LSKQ----FDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 685 ~~~~----~~~~~~~L~~L~l~~~~~ 706 (997)
.+.. .+....+|+.+.+..|++
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCc
Confidence 3321 122234566666665554
No 219
>PRK04132 replication factor C small subunit; Provisional
Probab=96.87 E-value=0.012 Score=71.17 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=92.8
Q ss_pred Ec--CCCCcHHHHHHHHHHHHhhh-CCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEE
Q 038902 167 QG--PGGIGKSTLMEQLAKQIDTI-APHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVL 243 (997)
Q Consensus 167 ~G--~~GiGKTtLa~~~~~~~~~~-~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~L 243 (997)
-| |.++||||+|.+++++.-.. ..++.+-++.+....+..+. +++..+....+ +. ..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~-~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IG-GASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cC-CCCCEE
Confidence 36 78999999999999986321 12333777777655555443 22222110000 00 025679
Q ss_pred EEEccccccc--cccccccccCCCCCceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHH
Q 038902 244 IILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGA 318 (997)
Q Consensus 244 lvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 318 (997)
+|+|+++... ..+.+...+-......++|++|.+. .+...... ..+++.+++.++-.+.+.+.+..+.-.-.++.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~ 713 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 713 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 9999998763 3444443333333456666666554 34443333 78999999999998888877643322223557
Q ss_pred HHHHHHHhCCchhHH
Q 038902 319 AKVIVKACGSLPNAI 333 (997)
Q Consensus 319 ~~~i~~~~~glPlai 333 (997)
...|++.++|.+-.+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 889999999977443
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.86 E-value=0.0014 Score=64.62 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
+..-+.++|+.|+|||.||.++.+.... ..+...++.+ .+++..+-. ...... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~--- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLK--- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHH---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeec------Cceeccccc----cccccc----hhhhcCccc---
Confidence 3467999999999999999999998765 3444566653 344444432 211111 112334455
Q ss_pred CcEEEEEcccccc
Q 038902 240 KKVLIILDDVREK 252 (997)
Q Consensus 240 k~~LlvlDdv~~~ 252 (997)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4457779998543
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0039 Score=65.25 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=56.2
Q ss_pred cHHHHHHH---HHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch
Q 038902 145 SSKALNSI---MKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE 221 (997)
Q Consensus 145 r~~~~~~l---~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 221 (997)
+...+..+ .+++. ...-+.++|++|+|||.||.++.++.. +..+.+.+++ ..+++.++......
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~------~~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT------APDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE------HHHHHHHHHHHHhc----
Confidence 44444444 34443 567889999999999999999999988 4455555554 44555555554432
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 222 EDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 222 ~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......+.+.+. +-=||||||+...
T Consensus 155 ---~~~~~~l~~~l~---~~dlLIiDDlG~~ 179 (254)
T COG1484 155 ---GRLEEKLLRELK---KVDLLIIDDIGYE 179 (254)
T ss_pred ---CchHHHHHHHhh---cCCEEEEecccCc
Confidence 112223333343 4558999998553
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.85 E-value=0.012 Score=71.89 Aligned_cols=102 Identities=19% Similarity=0.355 Sum_probs=60.4
Q ss_pred cccccHHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------D--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++.... ..+.++.++-.+.. .+
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~----~~~~~d~se~~~~~----~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV----HLERFDMSEYMEKH----TV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC----CeEEEeCchhhhcc----cH
Confidence 678999999988877742 1 2346889999999999999999987631 12566655422211 12
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...++....... .+....+.+.++. ...-+++||+++..
T Consensus 527 ~~lig~~~gyvg-~~~~~~l~~~~~~-~p~~VvllDEieka 565 (731)
T TIGR02639 527 SRLIGAPPGYVG-FEQGGLLTEAVRK-HPHCVLLLDEIEKA 565 (731)
T ss_pred HHHhcCCCCCcc-cchhhHHHHHHHh-CCCeEEEEechhhc
Confidence 222332211000 0111223444444 34569999999754
No 223
>PRK09183 transposase/IS protein; Provisional
Probab=96.84 E-value=0.0037 Score=65.81 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+.|+|++|+|||+||..++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999887543
No 224
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.83 E-value=0.024 Score=70.04 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=38.0
Q ss_pred cccccHHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD-------D--KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||.+|+.+++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999887731 1 245789999999999999999998864
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.046 Score=67.87 Aligned_cols=104 Identities=15% Similarity=0.285 Sum_probs=60.1
Q ss_pred cccccHHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------D--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDK 210 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~ 210 (997)
.++|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..-.. -.. +-++.++-.+...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~---- 583 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT---- 583 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc----
Confidence 688999999999877742 1 13467789999999999999999876321 122 5555544322111
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
+..-+|.+..... ......+.+.++. ...-+++||++...
T Consensus 584 ~~~l~g~~~gyvg-~~~~~~l~~~~~~-~p~~VvllDeieka 623 (821)
T CHL00095 584 VSKLIGSPPGYVG-YNEGGQLTEAVRK-KPYTVVLFDEIEKA 623 (821)
T ss_pred HHHhcCCCCcccC-cCccchHHHHHHh-CCCeEEEECChhhC
Confidence 1112232211000 0011234455555 23468999999754
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.011 Score=65.20 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=82.0
Q ss_pred cccccHHHHHHHHHHhcc-CCceE-EEEEcCCCCcHHHHHHHHHHHHhhhC--------------------CCceEEEEE
Q 038902 141 DLTHSSKALNSIMKLLKD-DKVNI-IGLQGPGGIGKSTLMEQLAKQIDTIA--------------------PHDKAHVIV 198 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~wv~v 198 (997)
+++|.+....++..+... ++... +.++|+.|+||||+|.++++..-... +.+...++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356778888888888873 44555 99999999999999999999876322 223344444
Q ss_pred ccCCC---HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCCceEEEE
Q 038902 199 AESSD---LRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIV 273 (997)
Q Consensus 199 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iiv 273 (997)
+.... ..+.++++.+....... .++.-++++|+++.... -.++....-.....+++|+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 44433 23333333333221110 25788999999987632 2333333333355677887
Q ss_pred eeCC-hhhhhcCCC--eeEEcCC
Q 038902 274 TSRR-LDVCSKMSD--VTVQIEE 293 (997)
Q Consensus 274 Ttr~-~~v~~~~~~--~~~~l~~ 293 (997)
+|.+ ..+...... ..+++.+
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EcCChhhccchhhhcceeeecCC
Confidence 7774 334443333 5677766
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.012 Score=67.04 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC--CCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES--SDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRER 238 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (997)
.-|.|.|+.|+|||+||+++++... +....+ ..++.+.- .....+++.+-.- +.+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~-- 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW-- 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh--
Confidence 5688999999999999999999887 334444 55555432 1223332222111 112222
Q ss_pred CCcEEEEEcccccc--------cccc-----------ccccccCCCCCceEEEEeeCChhhhh-cCC---C--eeEEcCC
Q 038902 239 TKKVLIILDDVREK--------INLA-----------VSGIPYGEERKRCKVIVTSRRLDVCS-KMS---D--VTVQIEE 293 (997)
Q Consensus 239 ~k~~LlvlDdv~~~--------~~~~-----------~l~~~~~~~~~gs~iivTtr~~~v~~-~~~---~--~~~~l~~ 293 (997)
-.+-+|||||++-. .+|. ++...+...++.-++|.|..+..-.. ... . .+..+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 38899999998542 1121 11112222222224555555443222 111 1 6778888
Q ss_pred CCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 294 LGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 294 L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
+...+-.++++......-.....+...-++.+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 888887777766554222111222233378888884
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.77 E-value=0.011 Score=71.44 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=60.8
Q ss_pred cccccHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++|.+..++.+.+.+.. .....+.++|+.|+|||++|+.++..... +| +.++.+.-.+.. .+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~--~~--i~id~se~~~~~----~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--EL--LRFDMSEYMERH----TV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC--Cc--EEeechhhcccc----cH
Confidence 578999999999887751 12457889999999999999999987732 22 555554332111 12
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..-+|.+..... ......+.+.++. ...-+|+||++...
T Consensus 531 ~~LiG~~~gyvg-~~~~g~L~~~v~~-~p~sVlllDEieka 569 (758)
T PRK11034 531 SRLIGAPPGYVG-FDQGGLLTDAVIK-HPHAVLLLDEIEKA 569 (758)
T ss_pred HHHcCCCCCccc-ccccchHHHHHHh-CCCcEEEeccHhhh
Confidence 222333211100 0111123344444 34569999999765
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.022 Score=69.92 Aligned_cols=169 Identities=16% Similarity=0.154 Sum_probs=91.8
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|.+..++.|.+.+.- ...+-+.++|++|+|||++|+++++.... +| +.+..+ +
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f--i~v~~~------~- 522 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF--IAVRGP------E- 522 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE--EEEehH------H-
Confidence 566777776666555421 23456889999999999999999997642 22 333221 1
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--------------ccccccccCC--CCCceEE
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--------------LAVSGIPYGE--ERKRCKV 271 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--------------~~~l~~~~~~--~~~gs~i 271 (997)
++... -..++. ....+.+..+. ..+.+|++|+++.... ...+...+.. ...+-.|
T Consensus 523 ---l~~~~----vGese~-~i~~~f~~A~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ---ILSKW----VGESEK-AIREIFRKARQ-AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ---Hhhcc----cCcHHH-HHHHHHHHHHh-cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 11110 111111 22222222222 4789999999864310 1112111211 2234567
Q ss_pred EEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 272 IVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 272 ivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
|.||...+.... . +. ..+.++..+.++-.++|+.+....+.... .-...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~-~~l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED-VDLEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc-CCHHHHHHHcCCCC
Confidence 777766554331 1 12 67888888888888898876642221111 11355677777753
No 230
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.017 Score=63.54 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRER 238 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (997)
....+-|+|..|.|||.|++++.+..... ... ..+.++ .......++..+.. ...+.+++.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~----se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLT----SEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEecc----HHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 36789999999999999999999998763 332 333332 23333344333321 1222223222 2
Q ss_pred CCcEEEEEcccccccc---cc-ccccccCC-CCCceEEEEeeCCh---------hhhhcCCC-eeEEcCCCCHHHHHHHH
Q 038902 239 TKKVLIILDDVREKIN---LA-VSGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-VTVQIEELGEEDRLKLF 303 (997)
Q Consensus 239 ~k~~LlvlDdv~~~~~---~~-~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~~~~l~~L~~~~~~~lf 303 (997)
-=++++||++-... |+ .+...|.. ...|-.||+|++.. .+..++.. -++++.+.+.+.....+
T Consensus 176 --~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred --cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 22788999976422 22 12122211 12233789998632 34445555 78999999999999999
Q ss_pred HHHcC
Q 038902 304 KQIAR 308 (997)
Q Consensus 304 ~~~~~ 308 (997)
.+.+.
T Consensus 254 ~kka~ 258 (408)
T COG0593 254 RKKAE 258 (408)
T ss_pred HHHHH
Confidence 88775
No 231
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0028 Score=69.61 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHhccCC---------ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 145 SSKALNSIMKLLKDDK---------VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 145 r~~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
-..|+++|+++|.+.. ++=|.++|++|.|||-||++++-+..+
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3457888899997641 567889999999999999999987665
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.011 Score=59.28 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK 218 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~ 218 (997)
+++|.+||+.|+||||.+..++...+.+ ......++.... ....+=++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4789999999999999999999988764 333355554322 23444456777777765
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.061 Score=57.99 Aligned_cols=174 Identities=10% Similarity=0.082 Sum_probs=96.2
Q ss_pred HHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCc--e------EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 148 ALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHD--K------AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 148 ~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~------~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
..+++.+.+..+. ...+-+.|+.|+||+++|+.+++..-....-+ | -++....++|...+... .-+..
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~~ 87 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE---KEGKS 87 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC---cCCCc
Confidence 3455666665555 45788999999999999999997653211100 0 00001111111100000 00000
Q ss_pred CchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCC-hhhhhcCCC--eeEE
Q 038902 219 IEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRR-LDVCSKMSD--VTVQ 290 (997)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~--~~~~ 290 (997)
. .. +.+..+.+.+.. .+++=++|+|+++... ..+++...+-.-.+++.+|++|.+ ..+...... ..+.
T Consensus 88 I---~v-dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 88 I---TV-EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred C---CH-HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 0 11 112223333322 2456688889987763 344454444333455666666554 455555444 7899
Q ss_pred cCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 291 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 291 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
+.+++.+++.+.+.... .. ....++..++|.|+.+..+
T Consensus 164 ~~~~~~~~~~~~L~~~~-~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQG-IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCCCHHHHHHHHHHcC-Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 99999999999886542 11 2356788999999877654
No 234
>PRK06921 hypothetical protein; Provisional
Probab=96.68 E-value=0.0029 Score=66.74 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
...-+.++|..|+|||+||.++++....+..+..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 356799999999999999999999876532344466653
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=96.68 E-value=0.07 Score=60.03 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
....+|.++|++|+||||+|..++..+...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 347899999999999999999998877653
No 236
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.68 E-value=0.0027 Score=68.43 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=41.3
Q ss_pred cccccHHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 141 DLTHSSKALNSIMKLLKD------DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+++|.++.++++++++.. ..-+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999853 23578999999999999999999998865
No 237
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0015 Score=60.17 Aligned_cols=23 Identities=48% Similarity=0.806 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+|+|+|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 238
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.66 E-value=0.11 Score=57.24 Aligned_cols=191 Identities=15% Similarity=0.215 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC---CCHHHHHHHHHHHhCC---
Q 038902 145 SSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES---SDLRRIQDKIAELLKF--- 217 (997)
Q Consensus 145 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~---~~~~~~~~~i~~~l~~--- 217 (997)
|.+.+++|..||.+..-..|.|.||-|.||+.|+ .++.++.+. ...+++.+- .+-..+++.++.++|=
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~-----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~Pv 75 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN-----VLVIDCDQIVKARGDAAFIKNLASQVGYFPV 75 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC-----EEEEEChHhhhccChHHHHHHHHHhcCCCcc
Confidence 6678899999999887889999999999999999 777654322 255555432 3344555555555542
Q ss_pred ---------------------CCc--hhhHHHHH-------HHHHH-------------------HHHh-cCCcEEEEEc
Q 038902 218 ---------------------KIE--EEDELQRR-------ATLAK-------------------RLRE-RTKKVLIILD 247 (997)
Q Consensus 218 ---------------------~~~--~~~~~~~~-------~~l~~-------------------~l~~-~~k~~LlvlD 247 (997)
+.. +..+.+.. ..+++ +|.. ...+=+||+|
T Consensus 76 Fsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVId 155 (431)
T PF10443_consen 76 FSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVID 155 (431)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEc
Confidence 110 11111111 11111 1111 1225689999
Q ss_pred cccccc-----------cccccccccCCCCCceEEEEeeCChhhhh----cCCC---eeEEcCCCCHHHHHHHHHHHcCC
Q 038902 248 DVREKI-----------NLAVSGIPYGEERKRCKVIVTSRRLDVCS----KMSD---VTVQIEELGEEDRLKLFKQIARL 309 (997)
Q Consensus 248 dv~~~~-----------~~~~l~~~~~~~~~gs~iivTtr~~~v~~----~~~~---~~~~l~~L~~~~~~~lf~~~~~~ 309 (997)
+..... +|... + ...+-.+||++|-+..... .+.. ..+.|...+.+.|.++...+...
T Consensus 156 nF~~k~~~~~~iy~~laeWAa~---L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 156 NFLHKAEENDFIYDKLAEWAAS---L-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred chhccCcccchHHHHHHHHHHH---H-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 985542 23321 1 2244568999997654433 3433 78999999999999999888753
Q ss_pred CC-C-------------------hhhHHHHHHHHHHhCCchhHHHHHHHHHcCCC
Q 038902 310 PD-S-------------------EAFEGAAKVIVKACGSLPNAIAIVAGALRGKL 344 (997)
Q Consensus 310 ~~-~-------------------~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~ 344 (997)
.. . ....+-....++..||=-.-+..+++.++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe 286 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE 286 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 21 0 12444566788899999999999999998543
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.042 Score=61.92 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK 218 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~ 218 (997)
..+.+|.++|++|+||||+|..++..++.. .+....|++... ....+-++.++.+++.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 347899999999999999999999888753 333344443221 12234455566666554
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.0083 Score=65.48 Aligned_cols=176 Identities=11% Similarity=0.094 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCc---e------EEEEEccCCCHHHHHHHHHHHhC
Q 038902 147 KALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHD---K------AHVIVAESSDLRRIQDKIAELLK 216 (997)
Q Consensus 147 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~---~------~wv~v~~~~~~~~~~~~i~~~l~ 216 (997)
..-+++.+.+..+. ..-+.+.|+.|+||+|+|.+++...-....-+ | -++....++|+..+..+ -+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~~ 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE----KG 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc----cc
Confidence 34566777776655 45677999999999999999998763321110 0 11111112222111000 00
Q ss_pred CCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCC-hhhhhcCCC--ee
Q 038902 217 FKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRR-LDVCSKMSD--VT 288 (997)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~--~~ 288 (997)
. ..-. -+.+..+.+.+.. .+++=++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+...+.. ..
T Consensus 85 ~--~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 85 K--SSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred c--ccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 0001 1222333444433 3577789999997763 334444444333456666666665 445544433 67
Q ss_pred EEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 289 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 289 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
+.+.+++.+++.+.+....+ . + .+.+..++..++|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~-~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT-M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC-C-C---HHHHHHHHHHcCCCHHHHH
Confidence 89999999999988865432 1 1 2236678999999996443
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.052 Score=56.19 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=51.5
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHH
Q 038902 148 ALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDEL 225 (997)
Q Consensus 148 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (997)
.+....++... .+...+.++|.+|+|||+||.++++...... ...++++ ..++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~it------~~~l~~~l~~~~~~--~~~--- 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLIIT------VADIMSAMKDTFSN--SET--- 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEE------HHHHHHHHHHHHhh--ccc---
Confidence 44455554432 2245789999999999999999999886531 1224443 44555554443321 111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....+.+.+. +-=+||+||+...
T Consensus 152 -~~~~~l~~l~---~~dlLvIDDig~~ 174 (244)
T PRK07952 152 -SEEQLLNDLS---NVDLLVIDEIGVQ 174 (244)
T ss_pred -cHHHHHHHhc---cCCEEEEeCCCCC
Confidence 1122334444 4447888999654
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.067 Score=63.83 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCC--HHHHHHHHHHHhCCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSD--LRRIQDKIAELLKFKI 219 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~--~~~~~~~i~~~l~~~~ 219 (997)
.++++++|+.|+||||++..++........... ..+.. +.+. ..+-++.....++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCc
Confidence 479999999999999999999987743211123 33333 2333 3333445555555543
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.015 Score=59.39 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQD 209 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~ 209 (997)
.-+++.|+|++|+|||++|.+++..... .... +|++... +...++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHH
Confidence 3579999999999999999999887654 2344 9999875 66655544
No 244
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00018 Score=72.13 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=41.3
Q ss_pred CccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccC--ccccCCCCCcEEecc
Q 038902 542 MREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELP--KGLERWINLKLLDLS 619 (997)
Q Consensus 542 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~ 619 (997)
+.+.+.|++.+|.+..+. ...+++.|++|.|+-|.|+.+..+..|.+|+.|+|+.|.|..+. ..+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334455555555555431 22345555555555555555555555555555555555544332 233455555555555
Q ss_pred CCccC
Q 038902 620 NNIFL 624 (997)
Q Consensus 620 ~~~~~ 624 (997)
.|...
T Consensus 97 ENPCc 101 (388)
T KOG2123|consen 97 ENPCC 101 (388)
T ss_pred cCCcc
Confidence 54433
No 245
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.054 Score=59.29 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=82.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEE
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVL 243 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~L 243 (997)
=.++||+|.|||+++.++++.+ .|+..=...+...+-.+ +++.|..-..+-.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~d------------------------Lr~LL~~t~~kSI 289 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSD------------------------LRHLLLATPNKSI 289 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHH------------------------HHHHHHhCCCCcE
Confidence 4589999999999999999987 46653333333222222 2223332236666
Q ss_pred EEEcccccccc-----------cc---------cccccc--CCCCC-ceE-EEEeeCChhhhh--cCC---C-eeEEcCC
Q 038902 244 IILDDVREKIN-----------LA---------VSGIPY--GEERK-RCK-VIVTSRRLDVCS--KMS---D-VTVQIEE 293 (997)
Q Consensus 244 lvlDdv~~~~~-----------~~---------~l~~~~--~~~~~-gs~-iivTtr~~~v~~--~~~---~-~~~~l~~ 293 (997)
||+.|++-..+ .+ -+...+ .|... +-| ||+||...+-.+ .+. . ..+.+..
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC
Confidence 77777753311 00 010011 12222 234 567887665333 111 1 5788999
Q ss_pred CCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCchhHHHHHH-HHHcCC
Q 038902 294 LGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLPNAIAIVA-GALRGK 343 (997)
Q Consensus 294 L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~-~~l~~~ 343 (997)
-+.+....||+...+... ++ +..+|.+.-.|.-+.=..+| .+|..+
T Consensus 370 Ctf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 999999999999987543 44 44444445555544444444 444555
No 246
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0087 Score=61.80 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhh--CCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTI--APHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE 237 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (997)
-|+|.++||+|.|||+|.++++++..++ ..+.. ..+.+... .++.+...+-| .-.....+.|.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsESg-----KlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSESG-----KLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhhh-----hHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998664 34444 55555433 23332222211 1223445555666666
Q ss_pred cCCcEEEEEcccccc
Q 038902 238 RTKKVLIILDDVREK 252 (997)
Q Consensus 238 ~~k~~LlvlDdv~~~ 252 (997)
++.=+++.+|+|...
T Consensus 248 ~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESL 262 (423)
T ss_pred CCcEEEEEeHHHHHH
Confidence 556677788988543
No 247
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.46 E-value=0.015 Score=67.00 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCCCccccccccHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEE
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKD-----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVI 197 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~ 197 (997)
+....+.++.-..+.++++..||.+ ...+++.+.||+|+||||.++.+++... |+. -|.+
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3344444666667778888888854 2357899999999999999999998863 555 5654
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.074 Score=59.43 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+..+++++|+.|+||||++..++....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~ 216 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV 216 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999987643
No 249
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.081 Score=57.56 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFKIE-EEDELQRRATLAKRLRE 237 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 237 (997)
..++++++|+.|+||||++..++.....+ .....+++..... ...+-++..+..++.+.. ..+..+....+ +.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHHh
Confidence 46899999999999999999999876543 2333556554322 223334455555665432 22333333333 33331
Q ss_pred cCCcEEEEEccccc
Q 038902 238 RTKKVLIILDDVRE 251 (997)
Q Consensus 238 ~~k~~LlvlDdv~~ 251 (997)
....=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 12456777786643
No 250
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.43 E-value=0.035 Score=58.04 Aligned_cols=164 Identities=21% Similarity=0.277 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHH-HHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRR-IQDKIAE 213 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~-~~~~i~~ 213 (997)
.++|-..+..++..|+.. ++..-+.|+||.|.|||+|...+..+.+ .+.- .-|.........+ .++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 688888888888888743 5667889999999999999988887732 3443 4455544333222 3445555
Q ss_pred HhCCCC-----chhhHHHHHHHHHHHHHh----cCCcEEEEEcccccccc-------ccccccccCCCCCceEEEEeeCC
Q 038902 214 LLKFKI-----EEEDELQRRATLAKRLRE----RTKKVLIILDDVREKIN-------LAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l~~----~~k~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
++.... ...+..+....+...|+. .+-++..|+|+.+-... ++-+-..-....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 543221 112334445555556654 33467888887754311 11111111234566778899985
Q ss_pred h-------hhhhcCCC-eeEEcCCCCHHHHHHHHHHHc
Q 038902 278 L-------DVCSKMSD-VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 278 ~-------~v~~~~~~-~~~~l~~L~~~~~~~lf~~~~ 307 (997)
. .|-.+..- .++-++.++-++...+++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3 23333333 355556666666666666655
No 251
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.43 E-value=0.015 Score=60.55 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh--hCCCce-EEEEEccC-CCHHHHHHHHHHHhCCCC-------chhh-----
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT--IAPHDK-AHVIVAES-SDLRRIQDKIAELLKFKI-------EEED----- 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~~----- 223 (997)
+-+.++|+|-.|+|||+|+..+.++... +.+-+. +++-+.+. .+..++..++...-..+. .+++
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4578899999999999999999887541 112345 88877655 466777777765432211 1111
Q ss_pred -HHHHHHHHHHHHHhc-CCcEEEEEcccccc
Q 038902 224 -ELQRRATLAKRLRER-TKKVLIILDDVREK 252 (997)
Q Consensus 224 -~~~~~~~l~~~l~~~-~k~~LlvlDdv~~~ 252 (997)
.....-.+.++++++ ++++|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 123445678898885 89999999998665
No 252
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00024 Score=71.29 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=36.2
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC---cccccCcccEEEec
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP---LKKEFKELVILILR 596 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp---~~~~l~~L~~L~L~ 596 (997)
+.+.|++.+|.+..+. ++.+++.|.+|.|+-|.|+.+ ..+..|.+|+.|+|+.|.|.++. -+.++++|++|=|.
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4444455554444332 244555555555555555544 22445555555555555544443 33444455555444
Q ss_pred CC
Q 038902 597 GS 598 (997)
Q Consensus 597 ~~ 598 (997)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 43
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.42 E-value=0.041 Score=67.60 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=89.7
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|.+..++++.+++.. ...+-|.++|++|+||||+|+.+++.... +| +.++.+ .+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~--i~i~~~------~i 248 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF--ISINGP------EI 248 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE--EEEecH------HH
Confidence 678999888888776631 23467889999999999999999987642 11 333221 11
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCC-CCCceEEEE
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYGE-ERKRCKVIV 273 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~-~~~gs~iiv 273 (997)
... ............+..... ..+.+|++|+++.... ...+...+.. ...+..++|
T Consensus 249 ----~~~----~~g~~~~~l~~lf~~a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 249 ----MSK----YYGESEERLREIFKEAEE--NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred ----hcc----cccHHHHHHHHHHHHHHh--cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 110 001111112222222222 3678999999865310 1112111111 122333444
Q ss_pred -eeCChh-hhhcC---CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh
Q 038902 274 -TSRRLD-VCSKM---SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 274 -Ttr~~~-v~~~~---~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl 331 (997)
||+... +...+ +. ..+.++..+.++-.++++......... .......+++.+.|.--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCH
Confidence 555432 21111 11 567778788888888887655322111 11124667788888643
No 254
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.11 Score=60.39 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=92.1
Q ss_pred cccccHHHHHHHHHHhcc---------CCc---eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD---------DKV---NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~---------~~~---~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
++.|-++.+.+|.+-+.- .+. .=|.++|++|.|||-+|++|+.+.. ..+++|..+ +++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKGP----ELL 742 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKGP----ELL 742 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecCH----HHH
Confidence 778888888888876632 222 3577899999999999999998643 345555433 111
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------------cccccccc---CC-CCCce
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------------LAVSGIPY---GE-ERKRC 269 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------------~~~l~~~~---~~-~~~gs 269 (997)
.- .+| ++++ ...++.++-++ ..+++|++|+++.... ..++...+ .+ ...+-
T Consensus 743 NM---YVG-----qSE~-NVR~VFerAR~-A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 743 NM---YVG-----QSEE-NVREVFERARS-AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HH---Hhc-----chHH-HHHHHHHHhhc-cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 11 111 1222 22333333333 5999999999876410 11122222 11 33455
Q ss_pred EEEEeeCChhhhhc--CC--C--eeEEcCCCCHHHHHH-HHHH---HcCCCCChhhHHHHHHHHHHhCCc
Q 038902 270 KVIVTSRRLDVCSK--MS--D--VTVQIEELGEEDRLK-LFKQ---IARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~~--~--~~~~l~~L~~~~~~~-lf~~---~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
-||=.|...+..+. +. . ..+.+++=.++++.. .++. ...-.++-++ .+|+++|.-.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL----~eiAk~cp~~ 878 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL----VEIAKKCPPN 878 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH----HHHHhhCCcC
Confidence 66767776665441 22 2 567777777666654 3332 2223334443 4566677554
No 255
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.15 Score=55.70 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=57.7
Q ss_pred CCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCC-hhhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCCh
Q 038902 239 TKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRR-LDVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSE 313 (997)
Q Consensus 239 ~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~ 313 (997)
+++=++|+|+++.. ...+.+...+-.-.+++.+|++|.+ ..+...+.. ..+.+.+++.++..+.+.... .. +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~~--~ 207 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-VA--D 207 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-CC--h
Confidence 45668888999876 3345554444444456656555554 445544433 789999999999999887652 11 1
Q ss_pred hhHHHHHHHHHHhCCchhHHHHHH
Q 038902 314 AFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 314 ~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
...++..++|.|..+..+.
T Consensus 208 -----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 -----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -----HHHHHHHcCCCHHHHHHHH
Confidence 1235778899997655443
No 256
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.35 E-value=0.025 Score=59.02 Aligned_cols=91 Identities=26% Similarity=0.289 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce-EEEEEccCCCHHHHHHHHHHHhCCCCc-------------h
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK-AHVIVAESSDLRRIQDKIAELLKFKIE-------------E 221 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~ 221 (997)
.-.++.|+|++|+|||++|.+++-....... ... +|++....++..++. ++++..+...+ .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 3579999999999999999999865432211 134 999988877665543 34444332211 1
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 222 EDELQRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 222 ~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
.........+.+.+.+.++--+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 111233344555555522677888887754
No 257
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.0015 Score=65.75 Aligned_cols=58 Identities=29% Similarity=0.284 Sum_probs=25.5
Q ss_pred ccCcccEEEecCCccccc--CccccCCCCCcEEeccCCccCC--CCChHHhhcCCCCcEEEe
Q 038902 586 EFKELVILILRGSSIREL--PKGLERWINLKLLDLSNNIFLQ--GIPPNIISKLCQLEELYI 643 (997)
Q Consensus 586 ~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l 643 (997)
++++|++|++++|+++-+ -..+..+.+|..|++.+|.... .-...++..+++|..|+-
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 334445555554443321 1223445555555555554221 111233445566655553
No 258
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0059 Score=63.01 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 144 HSSKALNSIMKLLK---DDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 144 gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.|...+++|.+.+. .+...+|+|.|.+|+||||+|+.+++.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666777777774 356789999999999999999999998864
No 259
>PRK12377 putative replication protein; Provisional
Probab=96.32 E-value=0.039 Score=57.28 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTK 240 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 240 (997)
...+.++|+.|+|||+||.++++..... ...++++++ .++...|-...... .. ...+.+.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~------~~l~~~l~~~~~~~---~~----~~~~l~~l~---~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTV------PDVMSRLHESYDNG---QS----GEKFLQELC---K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEH------HHHHHHHHHHHhcc---ch----HHHHHHHhc---C
Confidence 4678999999999999999999998753 222355544 34444444333211 01 112333343 7
Q ss_pred cEEEEEccccc
Q 038902 241 KVLIILDDVRE 251 (997)
Q Consensus 241 ~~LlvlDdv~~ 251 (997)
-=||||||+..
T Consensus 164 ~dLLiIDDlg~ 174 (248)
T PRK12377 164 VDLLVLDEIGI 174 (248)
T ss_pred CCEEEEcCCCC
Confidence 77999999944
No 260
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.016 Score=59.45 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=66.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhC-----------CC---ce-EEEEEccCC--------CH-------------
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIA-----------PH---DK-AHVIVAESS--------DL------------- 204 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----------~f---~~-~wv~v~~~~--------~~------------- 204 (997)
-..++|+||+|.|||||.+.+..-.+... .+ .. .|| .+.. ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV--PQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV--PQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc--CcccccCCCCCcCHHHHHHccCccccc
Confidence 47899999999999999999986332100 00 11 222 1110 11
Q ss_pred ---------HHHHHHHHHHhCCC------CchhhH-HHHHHHHHHHHHhcCCcEEEEEccccc------ccccccccccc
Q 038902 205 ---------RRIQDKIAELLKFK------IEEEDE-LQRRATLAKRLRERTKKVLIILDDVRE------KINLAVSGIPY 262 (997)
Q Consensus 205 ---------~~~~~~i~~~l~~~------~~~~~~-~~~~~~l~~~l~~~~k~~LlvlDdv~~------~~~~~~l~~~~ 262 (997)
++...+.+++++.. ..+-+. +...-.+.+.|.+ +.=|++||+=-. .....++...+
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~~lL~~l 185 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 23444555555542 112222 2334456788887 899999997322 22233343343
Q ss_pred CCCCCceEEEEeeCChhhhhcCCC
Q 038902 263 GEERKRCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 263 ~~~~~gs~iivTtr~~~v~~~~~~ 286 (997)
... |.-|+++|-+-........
T Consensus 186 ~~e--g~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 186 RQE--GKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred HHC--CCEEEEEeCCcHHhHhhCC
Confidence 332 7778888888665444333
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.047 Score=61.45 Aligned_cols=93 Identities=20% Similarity=0.375 Sum_probs=59.1
Q ss_pred cccccccHHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKD------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+.++.|.+..+.++.+++.. ...+=|.++||+|+|||.||++++++..+ +| +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf----~~isAp----- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF----LSISAP----- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce----Eeecch-----
Confidence 34788999888888776632 13567899999999999999999998876 43 333322
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
+|+.... .+++........+... .-++++++|+++-
T Consensus 258 ---eivSGvS----GESEkkiRelF~~A~~--~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS----GESEKKIRELFDQAKS--NAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC----cccHHHHHHHHHHHhc--cCCeEEEeecccc
Confidence 2222221 1222222222222223 4899999999854
No 262
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.013 Score=54.55 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE 221 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 221 (997)
+|.|.|++|+||||+|+.++++..-. ..+.-.++++|++..|.+..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~------------~vsaG~iFR~~A~e~gmsl~e 48 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK------------LVSAGTIFREMARERGMSLEE 48 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc------------eeeccHHHHHHHHHcCCCHHH
Confidence 68999999999999999999987531 113446899999999987543
No 263
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.28 E-value=0.01 Score=66.63 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce
Q 038902 116 LSELAKDKITKIDELMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK 193 (997)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 193 (997)
+..++.++.+.+.. .++||+..++.+...+..+ ..|.|.|++|+|||++|+.+.........|..
T Consensus 7 ~~~~i~~l~~~l~~-----------~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~ 71 (498)
T PRK13531 7 LAERISRLSSALEK-----------GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY 71 (498)
T ss_pred HHHHHHHHHHHHhh-----------hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCccee
Confidence 34455555555555 7999999999998888655 57889999999999999999997654334543
No 264
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0024 Score=64.29 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=56.2
Q ss_pred cccccCCEEEcCCCCccCCCcccccCcccEEEecCC--ccc-ccCccccCCCCCcEEeccCCcc--CCCCChHHhhcCCC
Q 038902 563 ECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGS--SIR-ELPKGLERWINLKLLDLSNNIF--LQGIPPNIISKLCQ 637 (997)
Q Consensus 563 ~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~ 637 (997)
-.+..|+.|.+.++.++.+..+-.|++|++|.++.| ++. .++....++++|++|++++|.. ++++++ +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 344556666666666666666667778888888887 333 4555556779999999999863 344444 567777
Q ss_pred CcEEEeecC
Q 038902 638 LEELYIGNS 646 (997)
Q Consensus 638 L~~L~l~~~ 646 (997)
|..|++.+|
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 777877766
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.26 E-value=0.016 Score=62.11 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLA 232 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (997)
.-+++-|+|++|+||||||.+++..... .-.. +|++..+.++.. .+++++.+.+ ....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3579999999999999999998877654 2234 888877666553 4556665421 122233333444
Q ss_pred HHHHhcCCcEEEEEccccc
Q 038902 233 KRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~ 251 (997)
..+++ +.--+||+|.|..
T Consensus 127 ~li~~-~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRS-GAVDIIVVDSVAA 144 (321)
T ss_pred HHhhc-cCCcEEEEcchhh
Confidence 44433 5677999999854
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0057 Score=56.82 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEE
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHV 196 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv 196 (997)
...|.|.||+|+||||+++.+++.++.. .|.. +|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEe
Confidence 3578999999999999999999999875 3665 444
No 267
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.23 E-value=0.016 Score=65.17 Aligned_cols=92 Identities=24% Similarity=0.319 Sum_probs=63.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC--------Cchh-----hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK--------IEEE-----DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~~-----~~ 224 (997)
+-+.++|+|.+|+|||||+..+++..... +-+. +++-+.+. ..+.++..++...-..+ .++. ..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 45789999999999999999999887643 4566 77666544 45666766666542221 1111 11
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRER-TKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~-~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++. ++++|+++|++...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 33455678899885 89999999999554
No 268
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.12 Score=58.77 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-CceEEEEEccCCC--HHHHHHHHHHHhCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-HDKAHVIVAESSD--LRRIQDKIAELLKFK 218 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~wv~v~~~~~--~~~~~~~i~~~l~~~ 218 (997)
.+|++++|+.|+||||++..++.....+.. .....+.. +.+. ..+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCC
Confidence 479999999999999999999987754322 22244433 2332 223334445555544
No 269
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.15 E-value=0.016 Score=58.61 Aligned_cols=89 Identities=22% Similarity=0.411 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------CchhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (997)
+-+.++|+|.+|+|||+|+..+.+... -+. +++.+.+. ..+.++.+++...-..+ ...+..
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 347899999999999999999998874 234 77777655 45666666664431111 011111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++||+...
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHH
Confidence 2233456788887899999999998544
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.14 E-value=0.02 Score=61.49 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLA 232 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (997)
.-+++-|+|++|+||||||.+++..... .-.. +|++....++.. .+++++.+.+ ..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 3578899999999999999999877654 2334 899887766643 4555555321 112233333443
Q ss_pred HHHHhcCCcEEEEEccccc
Q 038902 233 KRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~ 251 (997)
..+++ +.--+||+|.|..
T Consensus 127 ~li~s-~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRS-GAVDLIVVDSVAA 144 (325)
T ss_pred HHHhc-cCCCEEEEcchHh
Confidence 33333 5678999998754
No 271
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.033 Score=56.91 Aligned_cols=167 Identities=19% Similarity=0.166 Sum_probs=92.8
Q ss_pred cccccHHHHHHHHHHh----------ccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 141 DLTHSSKALNSIMKLL----------KDD--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l----------~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
++-|-+...+.|.+.+ ... .-+-|.++|++|.||+.||++|+..... .+++||.. ++.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS------TFFSvSSS----DLv 203 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSS----DLV 203 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC------ceEEeehH----HHH
Confidence 3445555555555443 222 2467889999999999999999987643 34555543 121
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc---------ccccccccc-------cCCCCCceEEE
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK---------INLAVSGIP-------YGEERKRCKVI 272 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~---------~~~~~l~~~-------~~~~~~gs~ii 272 (997)
...+ | ..+.+...+.+.-++ .|+-.|++|.|+.. +.-..+... ......|.-|+
T Consensus 204 SKWm---G------ESEkLVknLFemARe-~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 204 SKWM---G------ESEKLVKNLFEMARE-NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHh---c------cHHHHHHHHHHHHHh-cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 1111 1 111222223332232 69999999998643 111112111 22334466666
Q ss_pred EeeCChhhhhc-----CCCeeEEcCCCCHHHHHH-HHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 273 VTSRRLDVCSK-----MSDVTVQIEELGEEDRLK-LFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 273 vTtr~~~v~~~-----~~~~~~~l~~L~~~~~~~-lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
=.|.-..+... +. ..|-+ +|++..|.. +|+-+.|..++.-.++-.++++++..|.
T Consensus 274 gATNiPw~LDsAIRRRFe-kRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFE-KRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred ecCCCchhHHHHHHHHhh-cceec-cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 67776655442 22 23333 466666654 7888888666555555566667777665
No 272
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.12 E-value=0.0076 Score=61.46 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE----EEDELQRRATLAKRLR 236 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~ 236 (997)
.+++.|+|+.|.||||+.+.+....... +-.. |+... ... .....++...++.... .........++...+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la-~~G~-~v~a~-~~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~ 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA-HIGS-FVPAD-SAT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH-hCCC-eeEcC-CcE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH
Confidence 4899999999999999999998542110 1111 11111 100 0122222222222111 0111222233333333
Q ss_pred hcCCcEEEEEccccccccc---c----ccccccCCC-CCceEEEEeeCChhhhhcC
Q 038902 237 ERTKKVLIILDDVREKINL---A----VSGIPYGEE-RKRCKVIVTSRRLDVCSKM 284 (997)
Q Consensus 237 ~~~k~~LlvlDdv~~~~~~---~----~l~~~~~~~-~~gs~iivTtr~~~v~~~~ 284 (997)
...++-|+++|+.....+. . .+...+... ..+..+|+||.+.+++...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2348899999998654221 1 122222222 2245799999988876643
No 273
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.12 E-value=0.047 Score=54.35 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=72.1
Q ss_pred cccccHHHHHHHHHHh----ccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhC
Q 038902 141 DLTHSSKALNSIMKLL----KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLK 216 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~ 216 (997)
.++|.+...+.+++-. .+-...-|.+||--|+|||.|++++.+.+..+ .-. -|.|.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr-LVEV~k---------------- 121 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR-LVEVDK---------------- 121 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe-EEEEcH----------------
Confidence 7889888888887533 34456789999999999999999999998763 222 222221
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc---ccccccccccC---CCCCceEEEEeeCCh
Q 038902 217 FKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK---INLAVSGIPYG---EERKRCKVIVTSRRL 278 (997)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~---~~~~~l~~~~~---~~~~gs~iivTtr~~ 278 (997)
++......+.+.|+..++||.|+.||+.-+ ..+..++..+. ...+..-++..|.++
T Consensus 122 ------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 112233445666666779999999999543 23444444442 123334455555443
No 274
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.048 Score=61.37 Aligned_cols=149 Identities=19% Similarity=0.308 Sum_probs=86.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
...=|.+|||+|+|||-||++|+|..+. +| ++|... +++..- .| +++....+...+.-. .
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~--NF----isVKGP----ELlNkY---VG-----ESErAVR~vFqRAR~--s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGA--NF----ISVKGP----ELLNKY---VG-----ESERAVRQVFQRARA--S 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccC--ce----EeecCH----HHHHHH---hh-----hHHHHHHHHHHHhhc--C
Confidence 3566889999999999999999998765 33 444322 111111 11 122222222222222 4
Q ss_pred CcEEEEEccccccc-------c------ccccccccC--CCCCceEEEEeeCChhhhhc--C--CC--eeEEcCCCCHHH
Q 038902 240 KKVLIILDDVREKI-------N------LAVSGIPYG--EERKRCKVIVTSRRLDVCSK--M--SD--VTVQIEELGEED 298 (997)
Q Consensus 240 k~~LlvlDdv~~~~-------~------~~~l~~~~~--~~~~gs~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~ 298 (997)
-+++|++|.++... . ..++...+. ....|..||-.|...++... + +. ...-++.=+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 89999999986531 1 122322332 24567788888887766441 1 22 566667777788
Q ss_pred HHHHHHHHcCC-----CCChhhHHHHHHHHHHhCCch
Q 038902 299 RLKLFKQIARL-----PDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 299 ~~~lf~~~~~~-----~~~~~~~~~~~~i~~~~~glP 330 (997)
-..+++..... ..+-+++++++. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887762 124455555542 3555653
No 275
>PRK09354 recA recombinase A; Provisional
Probab=96.11 E-value=0.019 Score=62.12 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLA 232 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (997)
.-+++-|+|++|+||||||.+++..... .-.. +||+....++. ..+++++.+.+ ..+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3578999999999999999999877654 2344 99988877765 34566665421 112233333444
Q ss_pred HHHHhcCCcEEEEEccccc
Q 038902 233 KRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~ 251 (997)
..+++ +.--+||+|-|-.
T Consensus 132 ~li~s-~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRS-GAVDLIVVDSVAA 149 (349)
T ss_pred HHhhc-CCCCEEEEeChhh
Confidence 44443 5677999999854
No 276
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.11 E-value=0.023 Score=63.70 Aligned_cols=92 Identities=23% Similarity=0.292 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------Cchhh------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEED------E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~------~ 224 (997)
.-+.++|+|..|+|||||+..++........ +. +++-+.+. ..+.++..++...-..+ ..+++ .
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999877654322 34 66666544 45677777776543221 11111 1
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++ +++++|+++|++...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2345568899988 899999999999655
No 277
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.10 E-value=0.017 Score=64.56 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCC-------CCchh-----hHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKF-------KIEEE-----DELQ 226 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~-------~~~~~-----~~~~ 226 (997)
.-.+++|+|+.|+|||||++.++...+. ... ++..-.+..++.++....+..... ..++. ....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468999999999999999988765432 223 444333455566555544443211 11111 1123
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 227 RRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 227 ~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..-.+.+++++.++++|+++||+...
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 44567888888899999999998654
No 278
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.09 E-value=0.022 Score=61.14 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++.++|||+.|+|||.+|++++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999998764
No 279
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.06 E-value=0.022 Score=63.57 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCCC-------chhh------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFKI-------EEED------E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~~------~ 224 (997)
.-+.++|+|..|+|||||++.+++.... +. +.+-+.+. ..+.++....+..-+.+. .+++ .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999976542 34 55555544 345555555544322210 1111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 3345567888888899999999999654
No 280
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.05 E-value=0.018 Score=59.40 Aligned_cols=130 Identities=23% Similarity=0.375 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh-------------------------------CCCce-EEEEEc--cC----
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-------------------------------APHDK-AHVIVA--ES---- 201 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-------------------------------~~f~~-~wv~v~--~~---- 201 (997)
+-.+++|+|++|+|||||.+.++.-.+.. ..|.. +.-.|. +.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 35799999999999999999999533210 01111 111110 00
Q ss_pred ----CCH--HHHHHHHHHHhCCC------CchhhHH-HHHHHHHHHHHhcCCcEEEEEccccccccc----c--cccccc
Q 038902 202 ----SDL--RRIQDKIAELLKFK------IEEEDEL-QRRATLAKRLRERTKKVLIILDDVREKINL----A--VSGIPY 262 (997)
Q Consensus 202 ----~~~--~~~~~~i~~~l~~~------~~~~~~~-~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~----~--~l~~~~ 262 (997)
.+. .++..+.++.++.. ..+-+.. .....+.+.|.+ +.=+|+||+=.+.-+. + ++...+
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 011 12344445555442 1222333 333456778887 8888889975433211 1 111111
Q ss_pred CCCCCceEEEEeeCChhhhhcCCCeeEEcC
Q 038902 263 GEERKRCKVIVTSRRLDVCSKMSDVTVQIE 292 (997)
Q Consensus 263 ~~~~~gs~iivTtr~~~v~~~~~~~~~~l~ 292 (997)
....|--||+++-+-..|.+.+.+.+-++
T Consensus 185 -~~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 185 -NREKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred -HHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 12346679999999988887766555443
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.019 Score=56.77 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHV 196 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv 196 (997)
...+|.++|+.|+||||+|+.+++.+.. ++.. +++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 4569999999999999999999999865 3444 444
No 282
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.98 E-value=0.019 Score=63.83 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCCC-------chhh------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFKI-------EEED------E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~~------~ 224 (997)
.-..++|+|..|+|||||++.++.... .+. +.+-+.+. ..+.++..+++..-+... .+++ .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999986432 345 55656544 345666666654432211 1111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...+-.+.++++++++++|+++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 2344567888888899999999998654
No 283
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.41 Score=53.63 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
...+|.++|+.|+||||+|..++..++.. .+....|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcC
Confidence 46899999999999999999999877643 333344443
No 284
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.97 E-value=0.017 Score=53.77 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=46.0
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEE
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVIL 593 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L 593 (997)
.|++|+.+.+.. .+..+....|..++.|+.+.+.++ +..++ ..+..+.+|+++.+.+ .+..++ .+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 455666666653 355555666666666777766654 44443 2345555666666654 333333 45556666666
Q ss_pred EecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCC
Q 038902 594 ILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQL 638 (997)
Q Consensus 594 ~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 638 (997)
++..+ +..++ ..+.++ +|+.+.+..+ +..++...+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 66543 44342 234444 6666655432 344555445555444
No 285
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.97 E-value=0.039 Score=52.92 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC---------------------C----------------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES---------------------S---------------- 202 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~---------------------~---------------- 202 (997)
+-..+-++|+.|.||||+.+.+|...+.. -..+|+.-.+- +
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 44678999999999999999999876542 22244432110 0
Q ss_pred -----CHHHHHH---HHHHHhCCCCc------h-hhHHHHHHHHHHHHHhcCCcEEEEEccc----cccccccccccccC
Q 038902 203 -----DLRRIQD---KIAELLKFKIE------E-EDELQRRATLAKRLRERTKKVLIILDDV----REKINLAVSGIPYG 263 (997)
Q Consensus 203 -----~~~~~~~---~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~~~k~~LlvlDdv----~~~~~~~~l~~~~~ 263 (997)
...++.+ +.++..+.... + ...++..-.|.+.+-+ ++-+++=|+= +..-.|+-+...-.
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1222222 22333333211 1 1223344456667776 8888888863 33333443222112
Q ss_pred CCCCceEEEEeeCChhhhhcCCC
Q 038902 264 EERKRCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 264 ~~~~gs~iivTtr~~~v~~~~~~ 286 (997)
-+..|.-|+++|.+.++.+.+..
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccC
Confidence 34568999999999998887765
No 286
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.94 E-value=0.027 Score=60.60 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEc-cCCCHHHHHHHHHHHhCCC--------Cchh-----hHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVA-ESSDLRRIQDKIAELLKFK--------IEEE-----DEL 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~-~~~~~~~~~~~i~~~l~~~--------~~~~-----~~~ 225 (997)
.-.+++|+|..|+|||||++.+...... ...+..-+. +..++.++.......-+.. .++. ...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA---DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999999876542 222333333 3445666666665543321 1111 112
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...-.+.+++++.++++|+++||+...
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 345567788888899999999998654
No 287
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.046 Score=64.37 Aligned_cols=171 Identities=20% Similarity=0.234 Sum_probs=96.5
Q ss_pred cccccH---HHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 141 DLTHSS---KALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 141 ~~~gr~---~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
++.|-+ .|++++++.|..+ -++=+-++||+|+|||-||++++-...+ +| +.++.+-
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--PF----~svSGSE------ 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PF----FSVSGSE------ 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--ce----eeechHH------
Confidence 445554 5566667777653 2566889999999999999999988765 43 3333221
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-----------------ccccccccCCCC--Cce
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-----------------LAVSGIPYGEER--KRC 269 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~--~gs 269 (997)
.+..+... ...+...+...-+ ...+..|.+|+++...- +.++......+. .+-
T Consensus 380 --FvE~~~g~-----~asrvr~lf~~ar-~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 380 --FVEMFVGV-----GASRVRDLFPLAR-KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHhccc-----chHHHHHHHHHhh-ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 11111000 0111222222222 24778888888754311 222222222222 233
Q ss_pred EEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhCCchhH
Q 038902 270 KVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIARLPDS-EAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~i~~~~~glPla 332 (997)
-++-+|+..++... + +. ..+.++.=+.....++|..++..... .+..++++ |+...-|.+=|
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 45556666665441 1 22 56677777777888899988874332 34555666 88888888755
No 288
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.92 E-value=0.042 Score=56.87 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
.-.++.|+|++|+|||++|.+++...... ...++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC-CCCHHHH
Confidence 35699999999999999999999876542 2333999887 5555444
No 289
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.90 E-value=0.063 Score=58.48 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHHHHHHhccC----CceEEEEEcCCCCcHHHHHHHHHHHHh-hhCCCceEEEEEccCCCH--HHHHHHHHHHhCCCCc
Q 038902 149 LNSIMKLLKDD----KVNIIGLQGPGGIGKSTLMEQLAKQID-TIAPHDKAHVIVAESSDL--RRIQDKIAELLKFKIE 220 (997)
Q Consensus 149 ~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~ 220 (997)
...+..++.++ +-++|++|||.||||||....++.++. .........|+.. .+.+ .+=++.-++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec-cchhhHHHHHHHHHHHhCCceE
Confidence 34444444443 378999999999999876666666654 3334444445443 2222 2223445556666644
No 290
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.89 E-value=0.011 Score=67.06 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=42.0
Q ss_pred ccccccHHHHHHHHHHh------ccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 140 SDLTHSSKALNSIMKLL------KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l------~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+++|.++.+++|++.+ .+..-+++.++||+|+||||||+.+++-...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 37899999999999988 3345689999999999999999999998765
No 291
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.86 E-value=0.042 Score=57.22 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC-------CchhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK-------IEEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (997)
+-+.++|+|..|+|||+|| ..+.+... ..+.++++-+.+. ..+.++...+...-..+ ..+++.
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~--~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG--KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC--CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 4578999999999999995 66665432 1333366666555 45666766666432211 111111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc-cccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK-INLAVS 258 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~-~~~~~l 258 (997)
....-.+.+++++.++++|+++||+... ..+.++
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1234567788888889999999999665 334443
No 292
>PRK08149 ATP synthase SpaL; Validated
Probab=95.85 E-value=0.029 Score=62.60 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEc-cCCCHHHHHHHHHHHhCCC--------Cchh-----hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVA-ESSDLRRIQDKIAELLKFK--------IEEE-----DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~-~~~~~~~~~~~i~~~l~~~--------~~~~-----~~ 224 (997)
+-..++|+|..|+|||||++.++.... -+. +...+. +..++.++..+........ .++. ..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456899999999999999999987543 233 333343 3345666666666543321 1111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......+.+++++.++++|+++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 3345567888888899999999999654
No 293
>PRK05922 type III secretion system ATPase; Validated
Probab=95.85 E-value=0.032 Score=62.31 Aligned_cols=91 Identities=24% Similarity=0.320 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHHHhCCCC-------chh------hH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAELLKFKI-------EEE------DE 224 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~~-------~~~------~~ 224 (997)
..-..++|+|..|+|||||++.+...... +..+.+-+.+ .....+.+.+.......+. .++ ..
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~~---d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSKS---TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCC---CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999999875432 2224444433 3344455555544332211 111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++||+...
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2345567889988899999999999665
No 294
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.81 E-value=0.023 Score=63.48 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCC--------Cchhh-----HH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFK--------IEEED-----EL 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~--------~~~~~-----~~ 225 (997)
.-..++|+|..|+|||||++.++...+. ... +...-.+...+.++....+..-+.+ .++.. ..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999988875432 222 3323334455666666555443221 11111 12
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...-.+.+++++.++++|+++||+...
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 344567888888899999999998654
No 295
>PRK06547 hypothetical protein; Provisional
Probab=95.80 E-value=0.014 Score=57.16 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 152 IMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 152 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+...+......+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445566788999999999999999999998754
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.80 E-value=0.028 Score=53.41 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRER 238 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (997)
.-.+++|+|+.|.|||||++.+...... ..- ++++-.. .++.-..-.......-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~- 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLE- 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhc-
Confidence 3478999999999999999999876542 222 4442100 000000011112233334555655
Q ss_pred CCcEEEEEcccccccc---ccccccccCCCCCceEEEEeeCChhhhhcCCCeeE
Q 038902 239 TKKVLIILDDVREKIN---LAVSGIPYGEERKRCKVIVTSRRLDVCSKMSDVTV 289 (997)
Q Consensus 239 ~k~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~ 289 (997)
++=++++|+--..-+ ...+...+... +..||++|.+.+........++
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 777888998643311 12222222111 2358888887766554433333
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.80 E-value=0.051 Score=52.86 Aligned_cols=39 Identities=38% Similarity=0.392 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS 202 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~ 202 (997)
++.|+|++|+||||++..++..... .....+++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 4689999999999999999988754 12223777765554
No 298
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.79 E-value=0.036 Score=62.07 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------Cchh------hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEE------DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~------~~ 224 (997)
+-+.++|.|.+|+|||+|+..+....... +-+. +++-+.+. ..+.++..++...-..+ ..++ ..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 45789999999999999999998875432 2355 88877655 45666666666542211 1111 11
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++ .++++|+++||+...
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2345567889987 889999999999654
No 299
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.78 E-value=0.024 Score=56.26 Aligned_cols=122 Identities=22% Similarity=0.321 Sum_probs=65.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEcc--CCCHHHHHH------HHHHHhCCCC------chhhH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAE--SSDLRRIQD------KIAELLKFKI------EEEDE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~--~~~~~~~~~------~i~~~l~~~~------~~~~~ 224 (997)
+-.+++|+|+.|.|||||++.++..... ..- ++++-.. ..+...... ++++.++... ..-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4569999999999999999999976532 222 4432111 112222211 2444554421 11122
Q ss_pred -HHHHHHHHHHHHhcCCcEEEEEcccccccc---ccccccccCCC-CC-ceEEEEeeCChhhhhcCCC
Q 038902 225 -LQRRATLAKRLRERTKKVLIILDDVREKIN---LAVSGIPYGEE-RK-RCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 225 -~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---~~~l~~~~~~~-~~-gs~iivTtr~~~v~~~~~~ 286 (997)
....-.+.+.+.. .+=++++|+-...-+ .+.+...+... .. +..||++|.+.+....+..
T Consensus 101 G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 101 GERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 2233345566665 888999998754322 12222222111 12 5678888887765544333
No 300
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.77 E-value=0.081 Score=54.46 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=32.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSD 203 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~ 203 (997)
.-.++.|.|.+|+||||+|.+++...... ....+|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCH
Confidence 35789999999999999999999876532 33348887655543
No 301
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.77 E-value=0.019 Score=65.92 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
.-++.-++|++|.||||||+-++++. -|..+=|++|...+...+-..|...+.... .+...+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GYsVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GYSVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----CceEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCC
Confidence 45789999999999999999999875 366688899988888887777766654321 121013
Q ss_pred CcEEEEEcccccc
Q 038902 240 KKVLIILDDVREK 252 (997)
Q Consensus 240 k~~LlvlDdv~~~ 252 (997)
++.-+|+|+++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7778888988765
No 302
>PTZ00494 tuzin-like protein; Provisional
Probab=95.75 E-value=1.9 Score=47.46 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=98.1
Q ss_pred cccccccHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHh
Q 038902 139 VSDLTHSSKALNSIMKLLK---DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
...++.|+.+=..+.+.|. -..++++.+.|.-|.||++|.+....+.. -..++|+|... ++-++.|.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~----~paV~VDVRg~---EDtLrsVVKAL 442 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG----VALVHVDVGGT---EDTLRSVVRAL 442 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC----CCeEEEEecCC---cchHHHHHHHh
Confidence 3378899888666666654 34689999999999999999998887653 23488888654 45678899999
Q ss_pred CCCCchh--hHHHHH-HHHHHHHH-hcCCcEEEEEccccccccccccc---cccCCCCCceEEEEeeCChhhhhcCCC--
Q 038902 216 KFKIEEE--DELQRR-ATLAKRLR-ERTKKVLIILDDVREKINLAVSG---IPYGEERKRCKVIVTSRRLDVCSKMSD-- 286 (997)
Q Consensus 216 ~~~~~~~--~~~~~~-~~l~~~l~-~~~k~~LlvlDdv~~~~~~~~l~---~~~~~~~~gs~iivTtr~~~v~~~~~~-- 286 (997)
+.+.-+. +..+.+ +.....-. ..++.=+||+- +.+-..+..+. ..+.....-+.|++----+.+.-....
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LP 521 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSR 521 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCc
Confidence 9875321 222222 22221111 12355555553 33322222111 122334456677765544332221111
Q ss_pred --eeEEcCCCCHHHHHHHHHHHcC
Q 038902 287 --VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 287 --~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
.-|-+++++.++|.++-++...
T Consensus 522 RLDFy~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 522 RLDFYCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred cceeEecCCcCHHHHHHHHhcccc
Confidence 6788999999999999887663
No 303
>PRK04040 adenylate kinase; Provisional
Probab=95.73 E-value=0.028 Score=55.93 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
..+|+|+|++|+||||+++.+.+.... .+.. ++ ..++...++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~--~~~~--~~------~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE--DYKI--VN------FGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc--CCeE--Ee------cchHHHHHHHHcCC
Confidence 368999999999999999999998741 2222 22 23455666666654
No 304
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.72 E-value=0.06 Score=60.57 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCH--HHHHHHHHHHhCCCCc----hhhHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDL--RRIQDKIAELLKFKIE----EEDELQRRATLA 232 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 232 (997)
..+.++.++|++|+||||+|..++..+..+..+...-|+.. .+.. .+-+...+.+.+.+.. ..+.........
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 34789999999999999999999988653223333444433 2222 2223344455554321 122223333333
Q ss_pred HHHHhcCCcE-EEEEcccc
Q 038902 233 KRLRERTKKV-LIILDDVR 250 (997)
Q Consensus 233 ~~l~~~~k~~-LlvlDdv~ 250 (997)
+.... +.+ +||+|-.-
T Consensus 176 ~~~~~--~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKE--NGFDVVIVDTAG 192 (428)
T ss_pred HHHHh--cCCCEEEEeCCC
Confidence 33433 444 67777553
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.72 E-value=0.013 Score=57.18 Aligned_cols=119 Identities=24% Similarity=0.236 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC--CHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS--DLRRIQDKIAELLKFKIEEEDELQRRATLAKRLR 236 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 236 (997)
+-.+++|+|+.|.|||||.+.++.... +..- +++.-.... +..+. ..+.++.-..-.......-.+.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh
Confidence 346899999999999999999987643 2233 554321111 11111 11111111111112223334555666
Q ss_pred hcCCcEEEEEcccccccc---ccccccccCC-CCCceEEEEeeCChhhhhcCCC
Q 038902 237 ERTKKVLIILDDVREKIN---LAVSGIPYGE-ERKRCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 237 ~~~k~~LlvlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtr~~~v~~~~~~ 286 (997)
. ++=++++|+-...-+ ...+...+.. ...|.-||++|.+.........
T Consensus 99 ~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 99 R--NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred c--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 5 788888998754322 1122222211 1235568888888765444333
No 306
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.72 E-value=0.03 Score=63.45 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCceEEEEEccCC-CHHHHHHHHHHHhC-CCCch-----hhHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDKAHVIVAESS-DLRRIQDKIAELLK-FKIEE-----EDELQRRATL 231 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~wv~v~~~~-~~~~~~~~i~~~l~-~~~~~-----~~~~~~~~~l 231 (997)
.-+...|+|++|+|||||++.+++..... ...+++.+-|.+.. .+.++.+.+-..+- ...+. ....+..-.+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999876542 12222444444433 34444443311111 11111 1223455567
Q ss_pred HHHHHhcCCcEEEEEcccccc
Q 038902 232 AKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 232 ~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.+++.+.++.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 788888899999999998654
No 307
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.015 Score=68.79 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=90.4
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH-HHHHHHHHhCCCC
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR-IQDKIAELLKFKI 219 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~-~~~~i~~~l~~~~ 219 (997)
.++||+.|++++++.|.-..-.--.++|.+|||||++|.-++.+..... |.....-.+ +.-++..-.....
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~--------VP~~L~~~~i~sLD~g~LvAGak 242 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGD--------VPESLKDKRIYSLDLGSLVAGAK 242 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCC--------CCHHHcCCEEEEecHHHHhcccc
Confidence 5789999999999999654333346789999999999999998865421 000000000 0011222221122
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--------ccc--cccccCCCCCceEEEEeeCChh--hhh-----
Q 038902 220 EEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--------LAV--SGIPYGEERKRCKVIVTSRRLD--VCS----- 282 (997)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--------~~~--l~~~~~~~~~gs~iivTtr~~~--v~~----- 282 (997)
-..+.+++...+.+.+...+ ++.+++|.+..... .++ +..|-...+.--.|--||-++. ...
T Consensus 243 yRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHH
Confidence 22344556666666666634 99999999866411 221 2122112222234556665432 111
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 283 KMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 283 ~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
.-.-..+.+..-+.+++...++-..
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1111788889999999998886554
No 308
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.044 Score=59.73 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
+.++|+++|++|+||||++..++...... .+....++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~a 277 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITT 277 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEec
Confidence 45799999999999999999999877642 333344444
No 309
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.70 E-value=0.058 Score=60.56 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhh------hCCCceEEEEEccCCC-HHHHHHHHHHHhC-CCC-------chhh
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDT------IAPHDKAHVIVAESSD-LRRIQDKIAELLK-FKI-------EEED 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~------~~~f~~~wv~v~~~~~-~~~~~~~i~~~l~-~~~-------~~~~ 223 (997)
.-+.++|.|..|+|||+|| ..+.+.... ...+-++++-+.+..+ +.+ +.+.+.+-+ .+. ..++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 3568899999999999997 667776522 1224348888876643 344 333333333 110 1111
Q ss_pred H------HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 E------LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~------~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
. ....-.+.+++++.++.+|+|+||+...
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1234457788888899999999998654
No 310
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.68 E-value=0.044 Score=58.01 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=76.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHH-HhhhCCCceEEEEEc-----cC---------CCHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQ-IDTIAPHDKAHVIVA-----ES---------SDLR 205 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~-~~~~~~f~~~wv~v~-----~~---------~~~~ 205 (997)
++-+|..+..--+++|.++++..|.+.|.+|.|||-||-+..=. .-.++.|..+-|.=. +. ..+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 45577777777788999999999999999999999999876532 223335555333211 11 0122
Q ss_pred HHHHHHHHHhCC--CCchhhHHHHHHHH----------HHHHHh-cCCcEEEEEccccccccccccccccCCCCCceEEE
Q 038902 206 RIQDKIAELLKF--KIEEEDELQRRATL----------AKRLRE-RTKKVLIILDDVREKINLAVSGIPYGEERKRCKVI 272 (997)
Q Consensus 206 ~~~~~i~~~l~~--~~~~~~~~~~~~~l----------~~~l~~-~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ii 272 (997)
-....|...+.. ..+... ....+.+ ..+++. +-.+-+||+|+..+... .++...+.-.+.||||+
T Consensus 305 PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIV 382 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIV 382 (436)
T ss_pred chHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEE
Confidence 223333333211 011111 1111111 122332 22467999999987632 12223344467899999
Q ss_pred EeeCChh
Q 038902 273 VTSRRLD 279 (997)
Q Consensus 273 vTtr~~~ 279 (997)
.|-.-.+
T Consensus 383 l~gd~aQ 389 (436)
T COG1875 383 LTGDPAQ 389 (436)
T ss_pred EcCCHHH
Confidence 8875443
No 311
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.68 E-value=0.064 Score=57.99 Aligned_cols=90 Identities=21% Similarity=0.190 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh----CCCce-EEEEEccCCCHHHHHHHHHHHhCCCCch----------hhH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI----APHDK-AHVIVAESSDLRRIQDKIAELLKFKIEE----------EDE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 224 (997)
.-+++-|+|++|+|||+++..++-..... ..-.. +||+....|+.+++. +++++++.+.+. .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 34688899999999999999877543211 11224 999999989888875 467777654221 011
Q ss_pred H---HHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 225 L---QRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 225 ~---~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
+ +....+...+.+ .+--|||+|.+..
T Consensus 174 e~~~~~l~~l~~~i~~-~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSE-EPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEEcchH
Confidence 1 222333334443 3455788887643
No 312
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.66 E-value=0.018 Score=59.65 Aligned_cols=29 Identities=41% Similarity=0.705 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+...+|+|.|++|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999998875
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.65 E-value=0.11 Score=46.84 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHhcc-------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|..-..+.+++.+.+ +++-|++..|++|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 678888777777666632 356799999999999999999999984
No 314
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.025 Score=55.53 Aligned_cols=24 Identities=50% Similarity=0.713 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.|.|++|+||||+|+.+.++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999854
No 315
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.64 E-value=0.04 Score=61.67 Aligned_cols=90 Identities=17% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEcc-CCCHHHHHHHHHHHhCCC--------Cc-----hhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAE-SSDLRRIQDKIAELLKFK--------IE-----EED 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~-~~~~~~~~~~i~~~l~~~--------~~-----~~~ 223 (997)
.+-++++|+|..|+|||||++.+...... +. +...+.. ..+..++....+.+-+.. .+ ...
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 34578999999999999999998875432 23 2233322 233444443444332221 01 112
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..+....+.++.++.++++|+++||+...
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 23445566777777789999999998665
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.056 Score=59.78 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCC--HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSD--LRRIQDKIAELLKFKIEEEDELQRRATLAKRLRER 238 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (997)
..++.++|++|+||||++..++........+....++. +.+. ....++..+..++.+..... ....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~~~---~~~~l~~~l~~- 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAIEQLKRYADTMGMPFYPVK---DIKKFKETLAR- 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHHHHHHHHHHhcCCCeeehH---HHHHHHHHHHh-
Confidence 46899999999999999999998653322332333332 2222 22233344455555432111 12334444443
Q ss_pred CCcEEEEEcc
Q 038902 239 TKKVLIILDD 248 (997)
Q Consensus 239 ~k~~LlvlDd 248 (997)
...=+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2334488883
No 317
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.34 Score=48.32 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=79.3
Q ss_pred cccc-cHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 141 DLTH-SSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 141 ~~~g-r~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+++| -++++++|.+.+.- .+++-+.++|++|.|||-||++|++.- +|.++.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgse---- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSE---- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechHH----
Confidence 4554 45666666655521 246778899999999999999999743 34667776431
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHH--HhcCCcEEEEEcccccccc------------c----cccccccC--CCC
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRL--RERTKKVLIILDDVREKIN------------L----AVSGIPYG--EER 266 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~~k~~LlvlDdv~~~~~------------~----~~l~~~~~--~~~ 266 (997)
+.+..+.. ....+++.+ +...-+-.|++|+++..-. . -++...+. ...
T Consensus 217 lvqk~ige------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 217 LVQKYIGE------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHhhh------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 21111110 111111111 1113566777777754310 0 00111111 123
Q ss_pred CceEEEEeeCChhhhhc--C--CC--eeEEcCCCCHHHHHHHHHHHc
Q 038902 267 KRCKVIVTSRRLDVCSK--M--SD--VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 267 ~gs~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~~~~lf~~~~ 307 (997)
+.-+||..|..-++.+. . +. .-+++++=+++.-.++++-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 45688888876665441 1 22 567888877777777776554
No 318
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.022 Score=61.92 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
.-+.++|+.|+|||+||.++++..... .+..+++++ .+++..+...-. ... . ..... .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~------~~l~~~l~~~~~-~~~--~--~~~~~-~~~l~---~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTA------DELIEILREIRF-NND--K--ELEEV-YDLLI---NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEH------HHHHHHHHHHHh-ccc--h--hHHHH-HHHhc---cC
Confidence 779999999999999999999988653 233355543 334444433211 100 0 11111 33343 33
Q ss_pred EEEEEcccccc--cccc--ccccccCCC-CCceEEEEeeCCh
Q 038902 242 VLIILDDVREK--INLA--VSGIPYGEE-RKRCKVIVTSRRL 278 (997)
Q Consensus 242 ~LlvlDdv~~~--~~~~--~l~~~~~~~-~~gs~iivTtr~~ 278 (997)
=||||||+... ..|. .+...+... ..+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 48999999544 2222 222222111 1234588888753
No 319
>PHA00729 NTP-binding motif containing protein
Probab=95.61 E-value=0.017 Score=58.23 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 151 SIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 151 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+++.+...+...|.|.|.+|+||||||..++++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555666899999999999999999999863
No 320
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.61 E-value=0.056 Score=60.49 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------Cchhh------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEED------E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~------~ 224 (997)
+-+.++|.|..|+|||||+..+........ =+. +++-+.+. ..+.+++.++...-... ..+++ .
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998765422 234 77766544 45677777775542221 11111 1
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++ +++++|+++||+...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2345567889988 789999999999665
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.59 E-value=0.015 Score=70.78 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH-hhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCC----chhhHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI-DTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKI----EEEDELQRRATLAKRL 235 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 235 (997)
.++++|+|++|.||||+.+.+.-.. ..+.- .+|.+.... .-..+.++...++... ...........+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G---~~Vpa~~~~-~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSG---IPIPANEHS-EIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhC---CCccCCccc-cccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999998662 11101 111111100 0001111111111110 0001111111223333
Q ss_pred HhcCCcEEEEEcccccccc---cccc----ccccCCCCCceEEEEeeCChhhhhcCCC----eeEEcCCCCHHHHHHHHH
Q 038902 236 RERTKKVLIILDDVREKIN---LAVS----GIPYGEERKRCKVIVTSRRLDVCSKMSD----VTVQIEELGEEDRLKLFK 304 (997)
Q Consensus 236 ~~~~k~~LlvlDdv~~~~~---~~~l----~~~~~~~~~gs~iivTtr~~~v~~~~~~----~~~~l~~L~~~~~~~lf~ 304 (997)
....++-|+++|+.....+ -..+ ...+ ...|+.+|+||...++...... ....+. ++. +... |.
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~ 472 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PT 472 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eE
Confidence 3224789999999865422 1122 1222 1357889999998876442211 111111 111 1111 11
Q ss_pred HHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCc
Q 038902 305 QIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLA 345 (997)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~ 345 (997)
.+.-..-+ -...|-.|++++ |+|-.+..-|..+.+...
T Consensus 473 Ykl~~G~~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~ 510 (771)
T TIGR01069 473 YKLLKGIP--GESYAFEIAQRY-GIPHFIIEQAKTFYGEFK 510 (771)
T ss_pred EEECCCCC--CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhH
Confidence 11111111 123577788777 788888877777765444
No 322
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.58 E-value=0.046 Score=60.92 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh------------hCCCceEEEEEccCCCHHHHHHHHHHHhC-CCC-------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT------------IAPHDKAHVIVAESSDLRRIQDKIAELLK-FKI------- 219 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~------------~~~f~~~wv~v~~~~~~~~~~~~i~~~l~-~~~------- 219 (997)
.-+.++|.|-+|+|||||+..+++..+. ...|-++.+-+.+.....+.+...+..-+ .+.
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4578999999999999999999987651 11222377777777766666666666554 211
Q ss_pred chhhH------HHHHHHHHHHHH-hcCCcEEEEEcccccc
Q 038902 220 EEEDE------LQRRATLAKRLR-ERTKKVLIILDDVREK 252 (997)
Q Consensus 220 ~~~~~------~~~~~~l~~~l~-~~~k~~LlvlDdv~~~ 252 (997)
.+++. ....-.+.++++ ++++++|+++||+...
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 233455788998 4789999999999554
No 323
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.58 E-value=0.076 Score=55.03 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC-----CCceEEEEEccCCCHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-----PHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~wv~v~~~~~~~~~~ 208 (997)
.-.++.|+|++|+|||++|..++....... ...++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 357999999999999999999987754321 1334999988777765553
No 324
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.55 E-value=0.032 Score=55.69 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+|.|+|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 325
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.55 E-value=0.11 Score=62.59 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
+-|.++|++|+|||++|+.+++.... +| +.++.+. +.. + ..+. ........+...-. ..+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f--~~is~~~------~~~-~--~~g~-----~~~~~~~~f~~a~~--~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF--FTISGSD------FVE-M--FVGV-----GASRVRDMFEQAKK--AAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE--EEEehHH------hHH-h--hhcc-----cHHHHHHHHHHHHh--cCC
Confidence 45899999999999999999987643 22 3332221 111 0 0010 11111112222222 378
Q ss_pred EEEEEcccccccc----------------ccccccccC--CCCCceEEEEeeCChhhhhc--C--CC--eeEEcCCCCHH
Q 038902 242 VLIILDDVREKIN----------------LAVSGIPYG--EERKRCKVIVTSRRLDVCSK--M--SD--VTVQIEELGEE 297 (997)
Q Consensus 242 ~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~ 297 (997)
.+|++|+++.... ...+...+. ....+.-||.||...+.... . +. ..+.++.-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 8999999865410 111111111 11234556668877654331 1 11 57778888888
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCc
Q 038902 298 DRLKLFKQIARLPD-SEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 298 ~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~gl 329 (997)
+-.++++.+....+ .++. -...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 88888887775322 1111 123466666663
No 326
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.55 E-value=0.33 Score=59.36 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=35.5
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|+...+..+.+.+.. ..-.-|.|+|..|+|||++|+.+.+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 578888888877665532 334578999999999999999998764
No 327
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.52 E-value=0.045 Score=55.55 Aligned_cols=212 Identities=10% Similarity=0.140 Sum_probs=111.5
Q ss_pred ccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh----hCCCce-EEEEEccCC----------
Q 038902 138 SVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT----IAPHDK-AHVIVAESS---------- 202 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~-~wv~v~~~~---------- 202 (997)
.+..+.++++....+......++.....++|+.|.||-|.+..+.++.-. +-+-+. .|..-+...
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 33457778888888887776677899999999999999999888877422 112223 444333220
Q ss_pred -----------CHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcE-EEEEcccccc--ccccccccccCCCCCc
Q 038902 203 -----------DLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKV-LIILDDVREK--INLAVSGIPYGEERKR 268 (997)
Q Consensus 203 -----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~-LlvlDdv~~~--~~~~~l~~~~~~~~~g 268 (997)
.-+-+.++|+++..-.... ..+..+.| ++|+..+++. +.-.++....-...+.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 1112222333222211000 00011222 3444444332 1111121111112334
Q ss_pred eEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch-hHHHHHHHHH-cCC
Q 038902 269 CKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-NAIAIVAGAL-RGK 343 (997)
Q Consensus 269 s~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l-~~~ 343 (997)
+|+|+...+. .+...... -.+++..-+++|....+++.+..+.-.--++++..|+++++|.- -|+-++-..- .+.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 5666655432 22222222 57889999999999999988865443333779999999999953 4443332211 111
Q ss_pred Cccc-chhhhhhhhHHHHHH
Q 038902 344 LANE-SNESLVNIWNDAVEE 362 (997)
Q Consensus 344 ~~~~-~~~~~~~~w~~~l~~ 362 (997)
..+. .......+|+-.+..
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred cccccCCCCCCccHHHHHHH
Confidence 1100 012224578877666
No 328
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.52 E-value=0.091 Score=57.38 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh-----CCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-----APHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-----~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.-.++-|+|++|+||||++.+++-..... ..-..+||+....++..++. +++..++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35788999999999999999998775421 12233999998888887764 44555554
No 329
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.51 E-value=0.038 Score=62.03 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHHHHHHHhCCCC-------chhh------
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQDKIAELLKFKI-------EEED------ 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~~i~~~l~~~~-------~~~~------ 223 (997)
.+-.+++|+|..|+|||||++.++..... +. ++..-.+...+.++.+.+...-+... .+++
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 34578999999999999999999865432 33 33333344556666666654432210 1111
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++++|+++||+...
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12344567888888899999999998654
No 330
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.51 E-value=0.05 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988765
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.51 E-value=0.025 Score=55.56 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=59.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEE------EccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVI------VAESSDLRRIQDKIAELLKFKIEEEDELQRRATLA 232 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~------v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (997)
+.-.+++|+|+.|+|||||++.++...... -..+++. +.+... -.......-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~q~~~-----------------LSgGq~qrv~la 83 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGITPVYKPQYID-----------------LSGGELQRVAIA 83 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEEEEEEcccCC-----------------CCHHHHHHHHHH
Confidence 345699999999999999999999765421 1123321 111111 111122333455
Q ss_pred HHHHhcCCcEEEEEcccccccc---ccccccccCC--CCCceEEEEeeCChhhhhcCCCeeEEc
Q 038902 233 KRLRERTKKVLIILDDVREKIN---LAVSGIPYGE--ERKRCKVIVTSRRLDVCSKMSDVTVQI 291 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~~~~---~~~l~~~~~~--~~~gs~iivTtr~~~v~~~~~~~~~~l 291 (997)
+.+.. ++-++++|+-...-+ ...+...+.. ...+.-||++|.+......+....+.+
T Consensus 84 ral~~--~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 84 AALLR--NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred HHHhc--CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 55665 778899998644321 1111111111 112245777777766555444434443
No 332
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.50 E-value=0.026 Score=56.13 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=37.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE 220 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 220 (997)
.|+|+|-||+||||+|..++.+...+..|+..-|+....++ +..+||.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~n-------L~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSN-------LPEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCC-------hHHhcCCCCC
Confidence 68999999999999999977777665446666667666554 4456676654
No 333
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.49 E-value=0.051 Score=61.35 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh---CCCceEEEEEccC-CCHHHHHHHHHHHhCCCC-------chh------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI---APHDKAHVIVAES-SDLRRIQDKIAELLKFKI-------EEE------ 222 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~---~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~------ 222 (997)
.-+.++|.|..|+|||||+..+++..... .+|-++.+-+.+. ..+.++...+...-..+. .++
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 45789999999999999999999876432 2233367766544 456777777665432211 111
Q ss_pred hHHHHHHHHHHHHH-hcCCcEEEEEcccccc
Q 038902 223 DELQRRATLAKRLR-ERTKKVLIILDDVREK 252 (997)
Q Consensus 223 ~~~~~~~~l~~~l~-~~~k~~LlvlDdv~~~ 252 (997)
........+.++++ ++++++|+++||+...
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 11234556889999 5799999999999654
No 334
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.49 E-value=0.012 Score=59.37 Aligned_cols=25 Identities=48% Similarity=0.900 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
||+|.|++|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999999875
No 335
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.48 E-value=0.012 Score=54.82 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~ 185 (997)
|+|.|+.|+||||+|+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 336
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.48 E-value=0.039 Score=61.86 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC--------Cchh-----hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK--------IEEE-----DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~~-----~~ 224 (997)
.-.+++|+|..|+|||||++.+..... .+. +...+... .+..++...+...-+.. .++. ..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 346899999999999999998876432 233 33334333 34555555555443321 1111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......+.++++++++++|+++||+...
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 2344567888988899999999998654
No 337
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.48 E-value=0.013 Score=47.40 Aligned_cols=23 Identities=48% Similarity=0.767 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 338
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.47 E-value=0.16 Score=53.33 Aligned_cols=89 Identities=29% Similarity=0.329 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhh----CCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc-------------hh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTI----APHDK-AHVIVAESSDLRRIQDKIAELLKFKIE-------------EE 222 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~~ 222 (997)
-.++=|+|++|+|||.|+..++-..... ..=.. +|++....|...++. +|+++.+.+.+ ..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4588999999999999999888654321 11223 999999999888875 56666543211 11
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
........+...+.+ .+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~-~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSE-SKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccc-cceEEEEecchHH
Confidence 112233333444444 4556888887643
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=95.45 E-value=0.13 Score=55.92 Aligned_cols=57 Identities=23% Similarity=0.186 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCH--HHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDL--RRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~--~~~~~~i~~~l~~~ 218 (997)
+..+|.++|++|+||||++..++..+... .+..+.+.. ..+.. .+-++..+..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~-Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAG-DTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecC-CcCcHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999999877653 344444432 33322 22234556666654
No 340
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0024 Score=61.67 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=47.6
Q ss_pred HHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeec
Q 038902 865 ALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVG 944 (997)
Q Consensus 865 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 944 (997)
+..+++++.|.+.+|..+.+. +++.+. +.+++|+.|+|++|+.+++ ..-..+..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~------------~L~~l~--~~~~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDW------------CLERLG--GLAPSLQDLDLSGCPRITD-GGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhH------------HHHHhc--ccccchheeeccCCCeech-hHHHHHHHhhhhHHHHhcC
Confidence 345677777888888877662 222222 2478888888888888887 4445667778888888877
Q ss_pred ccccc
Q 038902 945 CNEME 949 (997)
Q Consensus 945 C~~L~ 949 (997)
-+.+.
T Consensus 186 l~~v~ 190 (221)
T KOG3864|consen 186 LPYVA 190 (221)
T ss_pred chhhh
Confidence 66554
No 341
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.44 E-value=0.013 Score=59.92 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH-HhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCC----chhhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ-IDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKI----EEEDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~-~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~ 233 (997)
..+++.|.|+.|.||||+.+.+.-. ... +-.+ +|..-..- ..+.+|...++... ..........++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHH
Confidence 3568899999999999999999873 221 1122 23211100 11112222222111 11122333444555
Q ss_pred HHHhcCCcEEEEEcccccccc-------ccccccccCCCCCceEEEEeeCChhhhhc
Q 038902 234 RLRERTKKVLIILDDVREKIN-------LAVSGIPYGEERKRCKVIVTSRRLDVCSK 283 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtr~~~v~~~ 283 (997)
.++..+++-|+++|+.....+ ...+...+.. ..++.+|++|.+.+++..
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 565555899999999733211 1112222222 247889999999887653
No 342
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.43 E-value=0.069 Score=56.27 Aligned_cols=125 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhC--------CCCc
Q 038902 150 NSIMKLLK-DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLK--------FKIE 220 (997)
Q Consensus 150 ~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~--------~~~~ 220 (997)
+.++..+. .+...-++|+|+.|+|||||++.++...... ...+++.-.+-... +-..+++.... ...+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecc-hhHHHHHHHhccccccccccccc
Confidence 33344443 3446789999999999999999999876531 11144321111000 11123332221 1111
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhh
Q 038902 221 EEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVC 281 (997)
Q Consensus 221 ~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~ 281 (997)
..+.......+...+.. -.+=+|++|++...+.+..+.... ..|..||+||.+..+.
T Consensus 176 v~~~~~k~~~~~~~i~~-~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRS-MSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccchHHHHHHHHHHh-CCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 11111122234444443 378899999998776665554443 2467799999876553
No 343
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.05 Score=55.84 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-----CCCHHHHHHHHHHHhCCCCc-------hhhH-HH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-----SSDLRRIQDKIAELLKFKIE-------EEDE-LQ 226 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~-~~ 226 (997)
+-.+++|||..|+||||+++.+..-.+. -...+++.-.+ .....+-..+++...+...+ +-+. +.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4579999999999999999999977653 23334444221 12234445666777665422 1122 22
Q ss_pred HHHHHHHHHHhcCCcEEEEEccccccccc------cccccccCCCCCceEEEEeeCChhhhhcCCC
Q 038902 227 RRATLAKRLRERTKKVLIILDDVREKINL------AVSGIPYGEERKRCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 227 ~~~~l~~~l~~~~k~~LlvlDdv~~~~~~------~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~ 286 (997)
..-.+.+.|.- ++-+||.|+--..-+. -.+...+ ....|-..++.|-+-.|+..+..
T Consensus 116 QRi~IARALal--~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALAL--NPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcc
Confidence 33446777776 9999999986544221 1111111 12335668888888888777665
No 344
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.42 E-value=0.013 Score=59.17 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHH-HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLR-RIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
.+|.|+|+.|+||||++..+...... +... +++ +..+.... .-...+..+-... .+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~vg---~~~~~~~~~i~~aLr~-- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREVG---LDTLSFENALKAALRQ-- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeecccC---CCccCHHHHHHHHhcC--
Confidence 47899999999999999998877653 2222 333 22221100 0000111110000 0112234456666766
Q ss_pred CcEEEEEccccccccccccccccCCCCCceEEEEeeCChh
Q 038902 240 KKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLD 279 (997)
Q Consensus 240 k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~ 279 (997)
..=.|++|++.+.+........ ...|-.++.|+-...
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~ 110 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNS 110 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCc
Confidence 6669999999877654432222 123445666665443
No 345
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.41 E-value=0.15 Score=53.90 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=42.9
Q ss_pred cccccHHHHH---HHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce
Q 038902 141 DLTHSSKALN---SIMKLLKDD--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK 193 (997)
Q Consensus 141 ~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 193 (997)
++||..+..+ -+++++..+ .-+.|.|+|++|.|||+||-.+++.+...-+|..
T Consensus 40 G~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 40 GLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred cccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 7899877654 467777665 3578999999999999999999999987667643
No 346
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.40 E-value=0.048 Score=60.89 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------Cchhh------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEED------E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~------~ 224 (997)
+-..++|+|..|+|||||.+.+++... -+. +.+-+.+. ..+.++....+..-+.+ ..+++ .
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999998654 245 67766554 34555554444332221 01111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++|++...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2344567889988899999999999654
No 347
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.40 E-value=0.043 Score=61.38 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEcc-CCCHHHHHHHHHHHhCCC-------Cchh------h
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAE-SSDLRRIQDKIAELLKFK-------IEEE------D 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~-~~~~~~~~~~i~~~l~~~-------~~~~------~ 223 (997)
..-.+++|+|..|+|||||++.+++... .+. ++..+.+ ...+.++..+....-... ...+ .
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3457899999999999999999886543 344 5555544 344545555543321110 0111 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++++|+++||+...
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 12345567888988899999999999654
No 348
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.39 E-value=0.14 Score=56.03 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC-----CCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-----PHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.-.++-|+|++|+|||+++.+++-...... ....+||+....++..++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 357889999999999999999987653211 2233999998888887765 44455544
No 349
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.18 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+-|..+||+|+|||++|+++++..+.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 4678999999999999999999998764
No 350
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.36 E-value=0.1 Score=56.79 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh----hCCCce-EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT----IAPHDK-AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
-.++-|+|++|+|||+|+..++-.... ...-.. +||+....|...++.. +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 468889999999999999998744321 111234 9999999999888755 66666654
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.34 E-value=0.16 Score=52.92 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.-.++.|.|++|+|||++|.++....-.. .-.++|++..+ +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeC--CHHHHHHHH
Confidence 45799999999999999999987654321 22238887654 455555553
No 352
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.048 Score=60.98 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCC-------chh------hHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKI-------EEE------DEL 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~-------~~~------~~~ 225 (997)
.-++++|+|..|+|||||++.++...+. ... +...-.+.....+.....+..-+... .+. ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4568899999999999999999876542 112 33222344667777666665433221 111 113
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..+..+.++++++++++||++||+...
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 344567788888899999999999665
No 353
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.32 E-value=0.04 Score=61.61 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC--------Cchh-----h
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK--------IEEE-----D 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~~-----~ 223 (997)
..-+.++|+|..|+|||||++.++..... +. +..-+.+. ....++....+.+-+.. .++. .
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 34578999999999999999988875432 33 33333332 34555555444332211 1111 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++++|+++||+...
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 12345567788888899999999998654
No 354
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.051 Score=61.31 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHH--hCC------CCch-----hhH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAEL--LKF------KIEE-----EDE 224 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~--l~~------~~~~-----~~~ 224 (997)
..-.+++|+|..|+|||||++.+...... -.. +++.-.+..++.++....+.. +.. ..++ ...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 45679999999999999999998875432 112 443323344455554432221 111 0111 111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++||+...
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 3345567888888899999999998554
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.32 E-value=0.1 Score=52.46 Aligned_cols=52 Identities=31% Similarity=0.427 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCC---------ceEEEEEccCCCHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPH---------DKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f---------~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.++.|+|++|+||||++..++........| ..+|++.... ..++.+.+....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~ 93 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALL 93 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHh
Confidence 588999999999999999999887653222 2266665544 445555554433
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.31 E-value=0.017 Score=59.02 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.+..+|+|+|++|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999986
No 357
>PRK04296 thymidine kinase; Provisional
Probab=95.30 E-value=0.018 Score=57.68 Aligned_cols=109 Identities=16% Similarity=0.068 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch---hhHHHHHHHHHHHHHhc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE---EDELQRRATLAKRLRER 238 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~ 238 (997)
.++.|+|+.|.||||+|..++.+.... -..+.+. ...++.+.....++.+++.+.+. ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~-k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~- 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF-KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG- 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE-eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC-
Confidence 477899999999999999999987653 2232222 12222222244556666654332 122333333333 22
Q ss_pred CCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh
Q 038902 239 TKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 239 ~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 34458999999543 2122222221 24577899998875
No 358
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.11 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.++++|+|.+|+||||+.+.+.... .. + +--+.-.+.-+++...|.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~--------~ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--H--------KIVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--c--------eeeeHhHHHHHHHHHhCC
Confidence 4799999999999999999988876 11 1 011344566666666654
No 359
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.27 E-value=0.013 Score=59.48 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.+++|+|+.|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999943
No 360
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.26 E-value=0.058 Score=61.00 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCCC-------chhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFKI-------EEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~~-------~~~~~------ 224 (997)
.-+.++|.|..|+|||||| ..+.+.... ..-++++-+.+. ..+.++...+...-..+. .+++.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~~--dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKGR--NVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcCC--CcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 3568999999999999996 577775421 222477777665 456677777665533211 11111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.++++++++++|||+||+...
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 2234457888888899999999999654
No 361
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.26 E-value=0.023 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
++++|+|+.|.||||+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 362
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.25 E-value=0.12 Score=56.71 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.++|+...+.++.+.+.. ..-.-|.|+|..|+||+++|+.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478888888888777642 23456889999999999999999854
No 363
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.079 Score=58.76 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCc-e-EEEEEccCCCHHHH--HHHHHHHhCCCCchh-hHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHD-K-AHVIVAESSDLRRI--QDKIAELLKFKIEEE-DELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~-~-~wv~v~~~~~~~~~--~~~i~~~l~~~~~~~-~~~~~~~~l~~ 233 (997)
..++|.++|+.|+||||.+..++..+.... .-. . ..+++ ..+..... ++..++.++.+.... .... +..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~----l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKD----LKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHH----HHH
Confidence 467999999999999999999998775421 112 2 33443 34333222 445566666653322 2222 233
Q ss_pred HHHhcCCcEEEEEccccc
Q 038902 234 RLRERTKKVLIILDDVRE 251 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~ 251 (997)
.+....+.-+|++|....
T Consensus 248 ~L~~~~~~DlVLIDTaGr 265 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHHhCCCCEEEEcCCCC
Confidence 232222566888887743
No 364
>PRK08233 hypothetical protein; Provisional
Probab=95.23 E-value=0.016 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.22 E-value=0.037 Score=52.28 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
|.++|+.|+|||+||+.+++... -...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh----cceEEEEeccccccccceee
Confidence 67899999999999999999872 22255677777777777553
No 366
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.0053 Score=59.32 Aligned_cols=44 Identities=14% Similarity=0.367 Sum_probs=20.0
Q ss_pred cCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhh
Q 038902 841 HVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEE 884 (997)
Q Consensus 841 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 884 (997)
.+++++.|.+.+|..+.+.......+-.++|+.|+|++|+.|++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34445555555555444432222222334555555555555544
No 367
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.20 E-value=0.053 Score=60.66 Aligned_cols=89 Identities=20% Similarity=0.359 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC-------Cchh------hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK-------IEEE------DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~------~~ 224 (997)
.-.+++|+|..|+|||||++.+....+ -+. +...+.+. ..+.++.......-..+ ..++ ..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 456899999999999999998886543 234 44445443 34555555554432211 1111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+++||+...
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 2344567888888899999999998654
No 368
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.061 Score=53.93 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=36.9
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++.|=.++++++.+...- +.++-|..+|++|.|||-+|++|+|+-..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 556778888888776532 34677889999999999999999997543
No 369
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.19 E-value=0.019 Score=58.51 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998765
No 370
>PRK06762 hypothetical protein; Provisional
Probab=95.15 E-value=0.019 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|.|+|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 371
>PRK07667 uridine kinase; Provisional
Probab=95.15 E-value=0.029 Score=56.39 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=29.4
Q ss_pred HHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 150 NSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 150 ~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+.+.+.+.. +...+|+|.|.+|+||||+|+.+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444432 34579999999999999999999998764
No 372
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.1 Score=54.74 Aligned_cols=89 Identities=25% Similarity=0.342 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHH-hCCC-CchhhHHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAEL-LKFK-IEEEDELQRRATLAKRLR 236 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~ 236 (997)
.-+++=|+|+.|+||||+|.+++-.... .-.. +|++....+++..+.. ++.. +..- .......+.+..+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 3578899999999999999999877655 3335 9999999898877744 3333 2211 011111122222233332
Q ss_pred hcC--CcEEEEEccccc
Q 038902 237 ERT--KKVLIILDDVRE 251 (997)
Q Consensus 237 ~~~--k~~LlvlDdv~~ 251 (997)
... +--|+|+|.|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 212 467889987643
No 373
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.14 Score=59.93 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
..+.+-++|++|.|||.||+++++..+. +| +.+... .+ ... .-.+++...........+ .
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~f----i~v~~~----~l----~sk----~vGesek~ir~~F~~A~~--~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RF----ISVKGS----EL----LSK----WVGESEKNIRELFEKARK--L 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eE----EEeeCH----HH----hcc----ccchHHHHHHHHHHHHHc--C
Confidence 4568899999999999999999996543 33 222111 11 110 011122222222222333 4
Q ss_pred CcEEEEEcccccccccc-------------ccccccC--CCCCceEEEEeeCChhhhhc--C--CC--eeEEcCCCCHHH
Q 038902 240 KKVLIILDDVREKINLA-------------VSGIPYG--EERKRCKVIVTSRRLDVCSK--M--SD--VTVQIEELGEED 298 (997)
Q Consensus 240 k~~LlvlDdv~~~~~~~-------------~l~~~~~--~~~~gs~iivTtr~~~v~~~--~--~~--~~~~l~~L~~~~ 298 (997)
.+..|++|+++....+. .+...+. ....+..||-||...+.... . +. ..+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999996542221 1212222 12233445666665544331 1 12 688899999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHHhCC
Q 038902 299 RLKLFKQIARLPDSE-AFEGAAKVIVKACGS 328 (997)
Q Consensus 299 ~~~lf~~~~~~~~~~-~~~~~~~~i~~~~~g 328 (997)
..+.|+.+....... ...-....+++...|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 999999998633221 222233444444444
No 374
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.12 E-value=0.088 Score=57.07 Aligned_cols=90 Identities=26% Similarity=0.386 Sum_probs=66.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEc-cCCCHHHHHHHHHHHhCCCC--------chh-----h
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVA-ESSDLRRIQDKIAELLKFKI--------EEE-----D 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~-~~~~~~~~~~~i~~~l~~~~--------~~~-----~ 223 (997)
+.-+.|+|..-+|+|||||.-.+++.- .+|. +-.-+. +...+++.+.+.+..-+... ++. .
T Consensus 161 G~GQRiGIFAgsGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~ 236 (441)
T COG1157 161 GKGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLK 236 (441)
T ss_pred ccCceeEEEecCCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHH
Confidence 456789999999999999999999854 4676 444444 44678888888877665431 111 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....+..+.++.++++|++|+++|-|...
T Consensus 237 aa~~At~IAEyFRDqG~~VLL~mDSlTRf 265 (441)
T COG1157 237 AAFTATTIAEYFRDQGKRVLLIMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeecHHHH
Confidence 23456778999999999999999998554
No 375
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.04 Score=54.13 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS 202 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~ 202 (997)
..+|+|-||-|+||||||+.++++.+ |..+.-.+.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~----~~~~~E~vednp 41 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG----FKVFYELVEDNP 41 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC----CceeeecccCCh
Confidence 46899999999999999999999886 333444444443
No 376
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.12 E-value=0.16 Score=55.12 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh----CCCce-EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI----APHDK-AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
.-.++.|+|.+|+||||++..++...... ..-.. +|++....+...++ .++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 35789999999999999999988643211 11134 99998888777764 4456665543
No 377
>PTZ00035 Rad51 protein; Provisional
Probab=95.09 E-value=0.22 Score=54.58 Aligned_cols=58 Identities=22% Similarity=0.162 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh---h-CCCce-EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT---I-APHDK-AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~---~-~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
.-.++.|+|++|+|||||+..++-.... . ..-.. +|++....++..++ .++++.++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 3578999999999999999998765431 0 01223 79998887777774 4556666543
No 378
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.046 Score=52.89 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=63.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERT 239 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 239 (997)
-.+++|+|..|.|||||++.++..... ..- +++.-...... ........++.-..-.......-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~-- 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVPQLSGGQRQRVALARALLL-- 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEeeCCHHHHHHHHHHHHHhc--
Confidence 469999999999999999999976542 222 44432211110 0011111121111111122333345566665
Q ss_pred CcEEEEEcccccccc---ccccccccCC-CCCceEEEEeeCChhhhhcCCCeeEE
Q 038902 240 KKVLIILDDVREKIN---LAVSGIPYGE-ERKRCKVIVTSRRLDVCSKMSDVTVQ 290 (997)
Q Consensus 240 k~~LlvlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 290 (997)
+.=++++|+....-+ ...+...+.. ...+.-++++|.+.+.......+.+.
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 788999999754322 1222111111 11245688888877666654333443
No 379
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.08 E-value=0.059 Score=60.64 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC-------CchhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK-------IEEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (997)
.-+.++|.|..|+|||||| ..+.+... ....|+++-+.+. ..+.++...+...-..+ ..+++.
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~--~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKG--QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhccc--CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 4578999999999999995 45555432 1333477777644 45667777666543221 111111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+|+||+...
T Consensus 218 p~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 218 PYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 1233457788888899999999999654
No 380
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.08 E-value=0.14 Score=57.28 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=30.6
Q ss_pred HHHHHHHHHhc-----cC--CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 147 KALNSIMKLLK-----DD--KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 147 ~~~~~l~~~l~-----~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+.+.++..||. .+ +-+++.|.|++|+||||.++.++.....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 33455555554 22 4579999999999999999999987643
No 381
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.07 E-value=0.082 Score=59.93 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh---CCCceEEEEEccC-CCHHHHHHHHHHHhCCC-------Cchhh-----
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI---APHDKAHVIVAES-SDLRRIQDKIAELLKFK-------IEEED----- 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~---~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~----- 223 (997)
.-+.++|.|..|+|||||+..+++..... ..+-++++-+.+. ..+.++..++...-..+ ..+++
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 45789999999999999999999876532 2333377777554 45677777776643221 11111
Q ss_pred -HHHHHHHHHHHHH-hcCCcEEEEEcccccc
Q 038902 224 -ELQRRATLAKRLR-ERTKKVLIILDDVREK 252 (997)
Q Consensus 224 -~~~~~~~l~~~l~-~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.++++ +.++++|+++||+...
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 1234556889998 5899999999999654
No 382
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.087 Score=51.92 Aligned_cols=123 Identities=20% Similarity=0.325 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCC---C---Cch--------hh-
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKF---K---IEE--------ED- 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~---~---~~~--------~~- 223 (997)
.-.+++|+|+.|.|||||++.++..... ..- ++++-....+.. ..+...++. . ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 3468999999999999999999875432 222 443211110000 011111110 0 000 11
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccccccccc---cccccccCC-CCCceEEEEeeCChhhhhcCCCeeEE
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREKINL---AVSGIPYGE-ERKRCKVIVTSRRLDVCSKMSDVTVQ 290 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~---~~l~~~~~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 290 (997)
.....-.+...+.. ++=++++|+-...-+. ..+...+.. ...|.-||++|.+......+....+.
T Consensus 99 G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 99 GMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 12233345666665 8889999997544221 112111111 12256788888887766544443333
No 383
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.03 E-value=1.4 Score=47.80 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=32.8
Q ss_pred eEEcCCCCHHHHHHHHHHHcCC---CCChhhHHHHHHHHHHhCCchhHH
Q 038902 288 TVQIEELGEEDRLKLFKQIARL---PDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 288 ~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~i~~~~~glPlai 333 (997)
.+++++++.+|+..++...... ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998876641 112344455666666779998543
No 384
>PTZ00301 uridine kinase; Provisional
Probab=95.03 E-value=0.023 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+|+|.|.+|+||||+|+.+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987743
No 385
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.02 E-value=0.019 Score=54.64 Aligned_cols=24 Identities=54% Similarity=0.775 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 386
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.02 E-value=0.037 Score=58.24 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 148 ALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 148 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++..+++...+..+|.|+|.+|+|||||+..+.+..+.
T Consensus 91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3455666777778999999999999999999999998765
No 387
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.01 E-value=0.07 Score=56.70 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+.+|+|.|+.|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998877665
No 388
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.01 E-value=0.03 Score=53.14 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
..+|.|.|..|+||||||+++.+++...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999863
No 389
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.00 E-value=0.066 Score=60.49 Aligned_cols=90 Identities=22% Similarity=0.367 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHHHhCCC-------Cchhh------HH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAELLKFK-------IEEED------EL 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~-------~~~~~------~~ 225 (997)
+-..++|+|..|+|||||++.+...... +..+...+.. ..++.++.......-+.+ ..++. ..
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~---~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEA---DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 4568899999999999999998876432 2223333333 334455544443321111 01111 12
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...-.+.+++++.++++|+++||+...
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslTr~ 265 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVTRF 265 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 334456788878899999999999654
No 390
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.032 Score=54.00 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+.|.+.|++|+||||+|++++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46788999999999999999998876
No 391
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.96 E-value=0.29 Score=57.35 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=44.5
Q ss_pred ccccccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC
Q 038902 138 SVSDLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES 201 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~ 201 (997)
....++|+...++++.+.+.. ..-.-|.|+|..|+|||++|+.+.+..... .-..+.|++..-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-~~p~v~v~c~~~ 249 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-DKPLVYLNCAAL 249 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-CCCeEEEEcccC
Confidence 344789999999888887743 334678899999999999999999864421 111155555543
No 392
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.94 E-value=0.1 Score=53.56 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+|+|.|+.|+||||+|+.+......
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999998753
No 393
>PRK03839 putative kinase; Provisional
Probab=94.94 E-value=0.022 Score=56.64 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.|+|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999864
No 394
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.025 Score=56.34 Aligned_cols=28 Identities=43% Similarity=0.725 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++.+|||.|.+|+||||+|+.+++.+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998875
No 395
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.93 E-value=0.12 Score=58.51 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHh-----C--C--C-----Cchhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELL-----K--F--K-----IEEED 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l-----~--~--~-----~~~~~ 223 (997)
.-+.++|.|..|+|||||+..+....... +=+. +++-+.+. ..+.++...+...- + . . ..+++
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 45789999999999999999998874321 1256 77777655 45677777776621 1 0 0 00111
Q ss_pred ------HHHHHHHHHHHHHhcCC-cEEEEEcccccc
Q 038902 224 ------ELQRRATLAKRLRERTK-KVLIILDDVREK 252 (997)
Q Consensus 224 ------~~~~~~~l~~~l~~~~k-~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++ ++||++||+...
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 12345567889988554 999999999665
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.93 E-value=0.023 Score=56.93 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+..+|.|+|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.92 E-value=0.081 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998876
No 398
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.92 E-value=0.099 Score=51.08 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEE-------EEccCCCHHHHHHHHHHHhCC-CCchhhH-HHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHV-------IVAESSDLRRIQDKIAELLKF-KIEEEDE-LQRRAT 230 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv-------~v~~~~~~~~~~~~i~~~l~~-~~~~~~~-~~~~~~ 230 (997)
.-.+++|+|+.|.|||||++.++...... -..+++ .+.+..... ...+.+.+.. ....-+. ....-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 44689999999999999999999765421 111222 122322111 0122222221 1111222 233334
Q ss_pred HHHHHHhcCCcEEEEEcccccccc---ccccccccCCCCCceEEEEeeCChhhhhcCCCeeEEc
Q 038902 231 LAKRLRERTKKVLIILDDVREKIN---LAVSGIPYGEERKRCKVIVTSRRLDVCSKMSDVTVQI 291 (997)
Q Consensus 231 l~~~l~~~~k~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~l 291 (997)
+.+.+.. ++=++++|+-...-+ ...+...+... +..||++|.+..... ...+++.+
T Consensus 102 laral~~--~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~~d~i~~l 160 (166)
T cd03223 102 FARLLLH--KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-FHDRVLDL 160 (166)
T ss_pred HHHHHHc--CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-hCCEEEEE
Confidence 5556665 778888998644322 11121222111 345777777766543 33344443
No 399
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.59 Score=47.01 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.2
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++.|-+++++++++.+-- ..++-+..+|++|.|||-+|++.+.+-.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 677889999999887621 2356788999999999999999987654
No 400
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.90 E-value=0.11 Score=55.66 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAKR 234 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 234 (997)
-+++-|+|+.|+||||||..+....... ...++||+....++. ..+..+|.+.+ ....++....+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 4799999999999999999999877542 233399998777654 34555665432 12223333444444
Q ss_pred HHhcCCcEEEEEcccccc
Q 038902 235 LRERTKKVLIILDDVREK 252 (997)
Q Consensus 235 l~~~~k~~LlvlDdv~~~ 252 (997)
++. +.--++|+|-|-..
T Consensus 127 irs-g~~~lVVvDSv~al 143 (322)
T PF00154_consen 127 IRS-GAVDLVVVDSVAAL 143 (322)
T ss_dssp HHT-TSESEEEEE-CTT-
T ss_pred hhc-ccccEEEEecCccc
Confidence 444 55568899987544
No 401
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.89 E-value=0.07 Score=52.87 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 446899999999999999999997643
No 402
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.099 Score=58.56 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC-CHHHHHHHHHHH-hCCC------Cchh-----hH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS-DLRRIQDKIAEL-LKFK------IEEE-----DE 224 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~-~~~~~~~~i~~~-l~~~------~~~~-----~~ 224 (997)
..-++++|+|..|+|||||++.++.... -+. +...+.+.. ...+.....+.. +... .++. -.
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence 4457899999999999999999986542 234 444444433 223333322211 1110 0111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......+.+++++.++++|+++||+...
T Consensus 231 ~~~a~~iAEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 2235567888888899999999999654
No 403
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.87 E-value=0.081 Score=60.13 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCC--------CchhhH-----
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFK--------IEEEDE----- 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~--------~~~~~~----- 224 (997)
.-+.++|.|..|+|||||| ..+.+... ....++++-+.+.. .+.++...+...-..+ .++...
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~~~--~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~a 238 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKD--SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLA 238 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhhcC--CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHH
Confidence 3568999999999999995 66665422 12333677776553 5666666665542221 111111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.++++++++++|+|+||+...
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 239 PFAGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 1233457788888899999999999654
No 404
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.87 E-value=0.094 Score=64.15 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH--h------------hhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI--D------------TIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDEL 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~--~------------~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (997)
+.+++.|.|+++.||||+.+.+.-.. . .-..|+.++..+....++..-... ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lSt-------------fS 392 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLST-------------FS 392 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhH-------------HH
Confidence 45789999999999999999997441 0 011233344443333222211111 11
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccccccccc---cccccc-cC-CCCCceEEEEeeCChhhhhcCCC----eeEEcCCCCH
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREKINL---AVSGIP-YG-EERKRCKVIVTSRRLDVCSKMSD----VTVQIEELGE 296 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~---~~l~~~-~~-~~~~gs~iivTtr~~~v~~~~~~----~~~~l~~L~~ 296 (997)
.....+...+..-..+-|+++|+.....+. ..+... +. -...|+.+|+||...++...... ....+.. +
T Consensus 393 ~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d- 470 (782)
T PRK00409 393 GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF-D- 470 (782)
T ss_pred HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-e-
Confidence 111222222222237789999998654221 122111 10 11347789999999877654322 1111211 1
Q ss_pred HHHHH-HHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCc
Q 038902 297 EDRLK-LFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLA 345 (997)
Q Consensus 297 ~~~~~-lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~ 345 (997)
++... .++-..|... ...|-.|++++ |+|-.+..-|..+.....
T Consensus 471 ~~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~ 515 (782)
T PRK00409 471 EETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDK 515 (782)
T ss_pred cCcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhh
Confidence 11111 0111112211 23577788877 788888877777765544
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.081 Score=52.01 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|.|||||++.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456999999999999999999997654
No 406
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.84 E-value=0.21 Score=51.70 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.-.++.|.|++|+||||+|.+++...... ....++++. ..+..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 34699999999999999987776654321 233366663 33456666665 34443
No 407
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.83 E-value=0.032 Score=49.87 Aligned_cols=25 Identities=52% Similarity=0.696 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
|-|+|++|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999887653
No 408
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.82 E-value=0.048 Score=51.26 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEcc
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAE 200 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~ 200 (997)
++|.|+|+.|+|||||++.+.+.+..+ .+.. +..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998753 4555 5666655
No 409
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.82 E-value=0.16 Score=54.56 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHH----hCCC----------Cchhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAEL----LKFK----------IEEED 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~----l~~~----------~~~~~ 223 (997)
+-+.++|.|..|+|||+|++.+++... -+. +++-+.+. ..+.+++.++-.. .+.. ...+.
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p 231 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP 231 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC
Confidence 446899999999999999999998542 345 77777554 4455666654321 1110 01111
Q ss_pred ------HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ------ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ------~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++++|+++|++...
T Consensus 232 ~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~ 266 (369)
T cd01134 232 VAAREASIYTGITIAEYFRDMGYNVALMADSTSRW 266 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHH
Confidence 12344557788888899999999997543
No 410
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.82 E-value=0.21 Score=54.48 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh----CCCce-EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI----APHDK-AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
.-.++-|+|.+|+|||+++..++-..... ..-.. +|++....|..+++ .+|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35788899999999999999888543311 11124 99999999988877 4567766654
No 411
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.80 E-value=0.094 Score=51.07 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=49.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCc
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKK 241 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~ 241 (997)
++.|.|..|+|||++|..+.... ... +++.-.+.++. ++.+.|..............+....+.+.+.+..+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 36799999999999999998651 224 77777777655 355555443322222222233344555556541133
Q ss_pred EEEEEcccc
Q 038902 242 VLIILDDVR 250 (997)
Q Consensus 242 ~LlvlDdv~ 250 (997)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 379999973
No 412
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.79 E-value=0.047 Score=50.69 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=55.1
Q ss_pred CChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccC-ccccC
Q 038902 534 IPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLER 609 (997)
Q Consensus 534 ~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~ 609 (997)
++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++ .+.++.+|+.+.+.. .+..++ ..+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3445677788888888875 455554 44677778888888774 66655 677777788888865 444444 33445
Q ss_pred CCCCcEEeccCCccCCCCChHHhhcCCCCcEEEee
Q 038902 610 WINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIG 644 (997)
Q Consensus 610 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 644 (997)
+.+|+.+.+..+ +..++...+.++ +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 777777777543 344555445555 66666654
No 413
>PRK04328 hypothetical protein; Provisional
Probab=94.75 E-value=0.14 Score=53.63 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.-.++.|.|++|+|||+||.++....-.. .-.++|++..+. ..++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~--~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEH--PVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCC--HHHHHH-HHHHcCC
Confidence 45789999999999999999987664321 222388887664 344333 3444443
No 414
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.73 E-value=0.063 Score=60.01 Aligned_cols=90 Identities=19% Similarity=0.307 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHHHhCCC-------CchhhH------H
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAELLKFK-------IEEEDE------L 225 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~-------~~~~~~------~ 225 (997)
.-++++|+|..|+|||||++.++..... +..+...+.. ..++.++...+...-... ..+++. .
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~~---d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~ 250 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQA---DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGA 250 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCCC---CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999999875432 2112223322 234455544443321111 011111 2
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...-.+.+++++.++++|+++||+...
T Consensus 251 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 251 AYATRIAEDFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhHH
Confidence 334557888888899999999998654
No 415
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.73 E-value=0.27 Score=46.95 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 416
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.72 E-value=0.1 Score=54.97 Aligned_cols=25 Identities=44% Similarity=0.680 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.|.++|++|+||||+|+.+++.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 417
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=94.71 E-value=0.086 Score=60.31 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC-------CchhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK-------IEEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (997)
.-+.++|.|..|+|||||| ..+.+... ....++++-+.+. ..+.++...+...-..+ ..+++.
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~~--~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a 237 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQKD--SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLA 237 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhcC--CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHH
Confidence 3468999999999999996 66666532 1232366777654 45667777766543221 111111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|||+||+...
T Consensus 238 ~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 238 PYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 2344567788888899999999999654
No 418
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.71 E-value=2.2 Score=47.02 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC--CHHHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS--DLRRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~--~~~~~~~~i~~~l~~~ 218 (997)
.+.+|-.||.=|.||||.|-.+++.++. ..+.. -+...+.+ ...+=++.++.+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKV-LLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCce-EEEecccCChHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999999886 33433 22222333 2333355666776654
No 419
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.70 E-value=0.039 Score=56.67 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..|.|+|++|+||||+|+.+++...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998764
No 420
>PRK00625 shikimate kinase; Provisional
Probab=94.70 E-value=0.027 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.++||.|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 421
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.68 E-value=0.043 Score=54.79 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEE
Q 038902 144 HSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHV 196 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv 196 (997)
++..+....++.+. ...++.+.|++|.|||.||-+.+-+.-...+|+. +++
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44555566666665 4679999999999999999999977655578888 555
No 422
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.67 E-value=0.055 Score=59.56 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=36.3
Q ss_pred cccccHHHHHHHHHHhccC--------------CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 141 DLTHSSKALNSIMKLLKDD--------------KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.++|+++.+..+.-.+... ..+.|.++|++|+|||++|+.++.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788888877775444321 2468899999999999999999998754
No 423
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.61 E-value=0.12 Score=59.11 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCCC-------chhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFKI-------EEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~------ 224 (997)
.-+.++|.|..|+|||+|| ..+.+... ..+-++++-+.+.. .+.++...+...-..+. .+++.
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~~~--~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a 238 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQKG--KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA 238 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHhcC--CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence 3468999999999999994 55555432 23444777776553 45666666655422210 11111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++++|+|+||+...
T Consensus 239 ~~~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 239 PYAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCchHH
Confidence 2234557788888899999999999654
No 424
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.60 E-value=0.25 Score=52.34 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEc
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVA 199 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~ 199 (997)
.+.++|.++|++|+||||++..++...... .+...+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 457899999999999999999999887642 2333555543
No 425
>PRK06820 type III secretion system ATPase; Validated
Probab=94.58 E-value=0.15 Score=57.23 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC-CHHHHHHHHHHHhCC--------CCchh-----hH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS-DLRRIQDKIAELLKF--------KIEEE-----DE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~-~~~~~~~~i~~~l~~--------~~~~~-----~~ 224 (997)
.-..++|+|..|+|||||++.++.... -+. +..-+.+.. ++.++.......-.. ..++. ..
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 446899999999999999998886442 233 444554442 223332222211000 01111 11
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...+..+.+++++.++++|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 238 LSTATTIAEYFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 2344567888888899999999998654
No 426
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.57 E-value=0.13 Score=56.96 Aligned_cols=86 Identities=27% Similarity=0.273 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHHhc
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE--DELQRRATLAKRLRER 238 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 238 (997)
-.++.|.|.+|+|||||+.+++...... ....+|++..+. ..++. .-++.++...+.- ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~- 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEE- 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh-
Confidence 4689999999999999999999877542 122377765433 33332 2244555432211 001112334444443
Q ss_pred CCcEEEEEccccc
Q 038902 239 TKKVLIILDDVRE 251 (997)
Q Consensus 239 ~k~~LlvlDdv~~ 251 (997)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 3667889997754
No 427
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.13 Score=59.39 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=35.6
Q ss_pred cccccHHHHHH---HHHHhccCC---------ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 141 DLTHSSKALNS---IMKLLKDDK---------VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 141 ~~~gr~~~~~~---l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+.-|.++.+++ +++.|.+.. ++=|..+|++|.|||.||++++....+
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 56677766554 455555432 466889999999999999999988766
No 428
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.53 E-value=0.4 Score=52.23 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=77.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC-C---ce------EEEEEccCCCHHHHHHHHH-HHhCCCCchhhHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP-H---DK------AHVIVAESSDLRRIQDKIA-ELLKFKIEEEDELQRRA 229 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f---~~------~wv~v~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~ 229 (997)
..-+.++|+.|+||||+|+.++...-.... - .| -++....++|...+..+=. ..-+.....-.. +.+.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~i-d~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKI-DAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCH-HHHH
Confidence 456889999999999999999987532110 0 00 0111111111111100000 000000000011 1222
Q ss_pred HHHHHHHh---cCCcEEEEEcccccccc--ccccccccCCCCCceEEEEeeCCh-hhhhcCCC--eeEEcCCCCHHHHHH
Q 038902 230 TLAKRLRE---RTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSD--VTVQIEELGEEDRLK 301 (997)
Q Consensus 230 ~l~~~l~~---~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~--~~~~l~~L~~~~~~~ 301 (997)
.+.+.+.. .+++=++|+|++...+. -..+...+.....+..+|++|.+. .+...+.. ..+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 23333332 23444556688766422 222222222112345566666654 45444333 788999999999998
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 302 LFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 302 lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
.+.... . +... . .+..++|-|+.
T Consensus 180 ~L~~~~-~--~~~~----~-~l~~~~g~p~~ 202 (325)
T PRK08699 180 YLRERG-V--AEPE----E-RLAFHSGAPLF 202 (325)
T ss_pred HHHhcC-C--CcHH----H-HHHHhCCChhh
Confidence 886542 1 1111 1 13467898854
No 429
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.52 E-value=0.37 Score=45.37 Aligned_cols=106 Identities=7% Similarity=0.020 Sum_probs=71.8
Q ss_pred HHHHHHHhhhhhhhhhhhcceecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 038902 13 PVASRTVDGLGNRVEEQIGYLLDYDDNLEGFRTRAGQLEARKNDVLGQVDKARDNNEKIKEAVLLWLAKAIQIEIDKEMM 92 (997)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~w~~~~~~~~~~~e~~ 92 (997)
||+|.+++.+...+.+...-...++.-++.+.+-++.+......|+..= ...+..-+.-++++.+...+++++
T Consensus 9 aalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~-------~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 9 AALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN-------VELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh-------hhcCCchhHHHHHHHHHHHHHHHH
Confidence 3666667777788887777777777777777777777777766654432 122333366778888888888889
Q ss_pred HHHHhhcCCCCcCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 038902 93 EEKIEKNKGPCHTWQLDWRFRCQLSELAKDKITKIDELM 131 (997)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 131 (997)
++.+..-. + -++...++.+++|+++.+.+....
T Consensus 82 V~k~sk~~-r-----~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 82 VEKCSKVR-R-----WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHhcccc-H-----HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 88865421 1 133445667888888888877653
No 430
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.50 E-value=0.064 Score=49.46 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 147 KALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 147 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++.+++-+.+.. ..-.+|.+.|.-|+||||+++.+++....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344444444432 23468999999999999999999998754
No 431
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.45 E-value=0.066 Score=59.67 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEEEcccccccccccc---ccccCCCCCceEEEEeeCChhhhhcCCCeeEEc
Q 038902 230 TLAKRLRERTKKVLIILDDVREKINLAVS---GIPYGEERKRCKVIVTSRRLDVCSKMSDVTVQI 291 (997)
Q Consensus 230 ~l~~~l~~~~k~~LlvlDdv~~~~~~~~l---~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~l 291 (997)
.+.+.|-. ++-|+.||+=.+.-+++++ -..+.....+ .++|++|+++-.+.++++++++
T Consensus 231 aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 231 ALARALFQ--KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred HHHHHHhc--CCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhee
Confidence 34455555 8999999997665443322 2223233333 6899999998887777755544
No 432
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.45 E-value=0.13 Score=58.01 Aligned_cols=91 Identities=20% Similarity=0.331 Sum_probs=57.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHHHhCCC-------CchhhH------
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAELLKFK-------IEEEDE------ 224 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (997)
..-..++|+|..|+|||||.+.++..... ...+.+.+.. ..++.+...+........ ....+.
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~---~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~ 219 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGASA---DVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKA 219 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHH
Confidence 44578899999999999999999975532 2223344433 445555655544432211 001111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......+.+++++.++++|+++|++...
T Consensus 220 ~~~a~~~AE~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 220 AYTATAIAEYFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCchHH
Confidence 2344456778877789999999999654
No 433
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.43 E-value=0.075 Score=54.05 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 114 CQLSELAKDKITKIDELMASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 114 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+.+++..+++.++.+.+. |. ..... -..+....|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~--~~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 9 RLIRERIAKLRRELEKVKKQ-----------RE--LQRRR--RKRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------HH--HHHHh--hhhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 44566777777777666442 11 11111 123456799999999999999999998763
No 434
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.15 Score=50.86 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEccccccccccccccc---cC-CCCCceEEEEeeCChhhhhcCCC
Q 038902 227 RRATLAKRLRERTKKVLIILDDVREKINLAVSGIP---YG-EERKRCKVIVTSRRLDVCSKMSD 286 (997)
Q Consensus 227 ~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~---~~-~~~~gs~iivTtr~~~v~~~~~~ 286 (997)
...++.+.+.- ++-+.|||.-++--+.+++... .. -..+|+-+++.|..+.++.....
T Consensus 151 KR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 151 KRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred HHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence 34556666666 8889999998887555544211 11 12336667888888888887765
No 435
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.43 E-value=0.028 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
++.|.|++|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999843
No 436
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.41 E-value=0.038 Score=54.56 Aligned_cols=26 Identities=42% Similarity=0.354 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...|.++|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 437
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=1.1 Score=47.96 Aligned_cols=164 Identities=10% Similarity=0.084 Sum_probs=91.4
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhh--------h-CCCceEEEEE-ccCCCHHHHHHHHHHHhCC
Q 038902 149 LNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDT--------I-APHDKAHVIV-AESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 149 ~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~--------~-~~f~~~wv~v-~~~~~~~~~~~~i~~~l~~ 217 (997)
++.+...+..+.. .+.-++|..|.||+++|+.+.+..-. . .+++..+++. .....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4455555655554 45569999999999999999988721 1 1233344322 1112222222 22222211
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCCceEEEEeeC-ChhhhhcCCC--eeEEcC
Q 038902 218 KIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIVTSR-RLDVCSKMSD--VTVQIE 292 (997)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr-~~~v~~~~~~--~~~~l~ 292 (997)
.. .. .+++=++|+|++..... .+++...+-...+.+.+|++|. ...+...... ..+++.
T Consensus 84 ~~---------------~~-~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 84 SS---------------FV-QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred CC---------------cc-cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 10 00 13677788888865532 3344444444455666666554 4444444332 789999
Q ss_pred CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 293 ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 293 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
++++++..+.+... + .+ ++.+..++...+|.=-|+..
T Consensus 148 ~l~~~~l~~~l~~~-~--~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK-N--KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc-C--CC---hhHHHHHHHHcCCHHHHHHH
Confidence 99999988877654 2 11 23456666667764345544
No 438
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.032 Score=51.07 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES 201 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~ 201 (997)
.-|.|.|.+|+||||+|.+++... +.-|+++++-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~------~~~~i~isd~ 41 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT------GLEYIEISDL 41 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh------CCceEehhhH
Confidence 457899999999999999999643 3357777654
No 439
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.40 E-value=0.03 Score=56.62 Aligned_cols=23 Identities=43% Similarity=0.816 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 440
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.38 E-value=0.18 Score=55.76 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=47.5
Q ss_pred cccccHHHHHHHHHHhcc---------C-----CceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCce-EEEEE-ccCCC
Q 038902 141 DLTHSSKALNSIMKLLKD---------D-----KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDK-AHVIV-AESSD 203 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~---------~-----~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~-~wv~v-~~~~~ 203 (997)
.++|.+..++.+..++.. + ..+.|.++|+.|+||||+|+.++...... .+++. -|... ....+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 588888888888766632 0 14689999999999999999999886531 11222 11111 11235
Q ss_pred HHHHHHHHHHH
Q 038902 204 LRRIQDKIAEL 214 (997)
Q Consensus 204 ~~~~~~~i~~~ 214 (997)
...+.+.+...
T Consensus 96 ~e~~ir~L~~~ 106 (443)
T PRK05201 96 VESIIRDLVEI 106 (443)
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.37 E-value=0.3 Score=50.84 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch------------------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE------------------ 221 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------------------ 221 (997)
.-.++.|+|.+|+|||++|.++....... .-.++|+...+. ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 45799999999999999999997654321 233388888654 45555553 333332110
Q ss_pred ---hhHHHHHHHHHHHHHhcCCcEEEEEcccc
Q 038902 222 ---EDELQRRATLAKRLRERTKKVLIILDDVR 250 (997)
Q Consensus 222 ---~~~~~~~~~l~~~l~~~~k~~LlvlDdv~ 250 (997)
.........+.+.+.+ .+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~-~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKS-KREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHh-cCCCEEEEecHH
Confidence 1123445555555554 345578899875
No 442
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.37 E-value=0.062 Score=52.51 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSD 203 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~ 203 (997)
..++.+.|+.|+|||.+|+.+++.... ..... +-++.+.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 457889999999999999999998863 13344 6666665443
No 443
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.35 E-value=0.055 Score=54.65 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE----EEDELQRRATLAKRL 235 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 235 (997)
..+++.|.|+.|.||||+.+.++.-.--. +.. ..+.. .+..-.+.+.|...++.... ..........+...+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la-~~G-~~vpa--~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA-QIG-CFVPA--EYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH-HcC-CCcch--hhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 34789999999999999999987543110 111 11111 11111233333333333211 011111122233333
Q ss_pred HhcCCcEEEEEcccccc---cc----ccccccccCCCCCceEEEEeeCChhhhhcCC
Q 038902 236 RERTKKVLIILDDVREK---IN----LAVSGIPYGEERKRCKVIVTSRRLDVCSKMS 285 (997)
Q Consensus 236 ~~~~k~~LlvlDdv~~~---~~----~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~ 285 (997)
....++-|+++|+.... .+ ...+...+. ..|..+|+||-+.+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 32347889999997332 11 111222222 23778999999988777544
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.31 E-value=0.037 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 445
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.24 E-value=0.35 Score=56.26 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCch----------------h
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEE----------------E 222 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------------~ 222 (997)
.-.++.|.|++|+|||||+.+++..... +-.. +++...+ +..++...+ +.++.+.+. .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 3578999999999999999999988754 2234 6665443 455665553 455543211 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEcccc
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVR 250 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~ 250 (997)
..++....+.+.+.+ .+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~-~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIAD-FKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHH-cCCCEEEEcCHH
Confidence 224455556666654 344467777654
No 446
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.23 E-value=0.048 Score=52.90 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+++|+|+.|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988865
No 447
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.22 E-value=0.036 Score=52.88 Aligned_cols=24 Identities=50% Similarity=0.846 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+|.|+|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 448
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.22 E-value=0.24 Score=49.42 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
++.|.|++|+|||++|.++....... .-.++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999988775431 22237776543 35555444
No 449
>PRK13949 shikimate kinase; Provisional
Probab=94.22 E-value=0.04 Score=53.87 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 450
>PRK14528 adenylate kinase; Provisional
Probab=94.20 E-value=0.13 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.|.|.|++|+||||+|+.+++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987753
No 451
>PHA02774 E1; Provisional
Probab=94.20 E-value=0.28 Score=56.21 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccC-CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEc
Q 038902 147 KALNSIMKLLKDD-KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVA 199 (997)
Q Consensus 147 ~~~~~l~~~l~~~-~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~ 199 (997)
.-+..+..++... +-..+.|+|++|+|||.+|..+.+-.. -.. .|++..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 3455566666442 346899999999999999999998864 223 566653
No 452
>PRK14532 adenylate kinase; Provisional
Probab=94.20 E-value=0.13 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~ 185 (997)
|.|+|++|+||||+|+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999754
No 453
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.18 E-value=0.063 Score=54.34 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLA 182 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~ 182 (997)
++++|.|++|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 454
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.17 E-value=0.18 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999997653
No 455
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.15 E-value=0.075 Score=57.93 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=39.8
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+..++|.+..+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34688999999888776767667788899999999999999998765
No 456
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.15 E-value=0.18 Score=52.05 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=69.3
Q ss_pred HHHHHHHhhhhhhhhhhhcceecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 038902 13 PVASRTVDGLGNRVEEQIGYLLDYDDNLEGFRTRAGQLEARKNDVLGQVDKARDNNEKIKEAVLLWLAKAIQIEIDKEMM 92 (997)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~w~~~~~~~~~~~e~~ 92 (997)
|.+..++..|-+.-......+.-++..++-++.|++.|+.|+..+ +++.....++ .+.+..++...||++|.+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYV 368 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYV 368 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeee
Confidence 455666666766666666667777778888888888888887764 2322223344 899999999999999999
Q ss_pred HHHHhhcCCCCcCCCcchhHH---HHhhHHHHHHHHHH
Q 038902 93 EEKIEKNKGPCHTWQLDWRFR---CQLSELAKDKITKI 127 (997)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~ 127 (997)
+|. |.....|.|... +.+.++|+-+++++
T Consensus 369 VDa------Ci~k~~P~Wcl~~WL~dIieei~~ik~~i 400 (402)
T PF12061_consen 369 VDA------CISKSVPHWCLERWLLDIIEEITCIKAKI 400 (402)
T ss_pred eeh------hhcCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 885 555555655443 34555666666554
No 457
>PRK05439 pantothenate kinase; Provisional
Probab=94.14 E-value=0.27 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+..-+|+|.|..|+||||+|+.+......
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987754
No 458
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.13 E-value=0.063 Score=57.60 Aligned_cols=60 Identities=28% Similarity=0.418 Sum_probs=41.2
Q ss_pred cccccHHHHHH---HHHHhccCC--ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC
Q 038902 141 DLTHSSKALNS---IMKLLKDDK--VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS 202 (997)
Q Consensus 141 ~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~ 202 (997)
++||+.+..+. +++++..++ -+.|.+.|++|.|||+||-.+++.+...-+| +-++.|+-+
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF--~~isgSEiy 89 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF--VSISGSEIY 89 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E--EEEEGGGG-
T ss_pred cccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe--eEcccceee
Confidence 88998876554 577777664 5899999999999999999999998864444 334444443
No 459
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.12 E-value=0.1 Score=61.85 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=58.4
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCC
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKI 219 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~ 219 (997)
+++|++..++.|...+... +.+.++|++|+||||+|+.+++..... +++. +|..- ...+...+++.++.++|...
T Consensus 32 ~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~-~~~~~~~~~n-p~~~~~~~~~~v~~~~G~~~ 107 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKE-ELQDILVYPN-PEDPNNPKIRTVPAGKGKQI 107 (637)
T ss_pred HcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChH-hHHHheEeeC-CCcchHHHHHHHHHhcCHHH
Confidence 7889999888888777654 578999999999999999999886432 4566 88654 44477888888888777643
No 460
>PRK06217 hypothetical protein; Validated
Probab=94.12 E-value=0.044 Score=54.62 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..|.|.|++|+||||+|+++.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998864
No 461
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.22 Score=53.91 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHHhc
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE--DELQRRATLAKRLRER 238 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 238 (997)
-.+|.|-|-+|||||||.-+++.+..... ...+|+-.+.. .++ +--+++++...+.- -.+...+.|.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 46899999999999999999999988643 34777654443 332 22355666443211 112233344455554
Q ss_pred CCcEEEEEcccccc
Q 038902 239 TKKVLIILDDVREK 252 (997)
Q Consensus 239 ~k~~LlvlDdv~~~ 252 (997)
.+.-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 58899999987554
No 462
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.07 E-value=0.058 Score=53.29 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998864
No 463
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.05 E-value=0.12 Score=52.72 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=35.5
Q ss_pred HHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCH
Q 038902 148 ALNSIMKLLK--DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDL 204 (997)
Q Consensus 148 ~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~ 204 (997)
+..++++.+. .++..+|+|.|++|+|||||..++...+.... ... +=|+=|.+++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCC
Confidence 4455555553 34678999999999999999999999987642 223 33343445543
No 464
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.03 E-value=0.09 Score=52.59 Aligned_cols=23 Identities=52% Similarity=0.653 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 465
>PF13245 AAA_19: Part of AAA domain
Probab=94.02 E-value=0.13 Score=42.37 Aligned_cols=26 Identities=35% Similarity=0.601 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKS-TLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKT-tLa~~~~~~~ 185 (997)
+.+++.|.|++|.||| |+++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567888999999999 5555555554
No 466
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.02 E-value=0.04 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.01 E-value=0.06 Score=54.81 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=28.3
Q ss_pred HHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 154 KLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 154 ~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.+.+.++++|+++|+.|+|||||..++.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345556899999999999999999999998764
No 468
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.00 E-value=0.33 Score=48.91 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..|+|.|..|+||||+|+.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999998865
No 469
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.97 E-value=0.027 Score=57.80 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIE----EEDELQRRATLAKR 234 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 234 (997)
+.+++.|.|+.|.||||+.+.+..-.-- +.. .+|.... ....+...++..++.... ..........+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4679999999999999999998743110 111 1111110 011122223333332211 11112223333344
Q ss_pred HHhcCCcEEEEEccc---cccccccc----cccccCCCCCceEEEEeeCChhhhhcCCC----eeEEcCCCCHH--HHHH
Q 038902 235 LRERTKKVLIILDDV---REKINLAV----SGIPYGEERKRCKVIVTSRRLDVCSKMSD----VTVQIEELGEE--DRLK 301 (997)
Q Consensus 235 l~~~~k~~LlvlDdv---~~~~~~~~----l~~~~~~~~~gs~iivTtr~~~v~~~~~~----~~~~l~~L~~~--~~~~ 301 (997)
++.-.++-|+++|+. .+..+-.. +...+. ...|+.+|+||-..++...+.. ...++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~-~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~- 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIA-TQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL- 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHH-hcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE-
Confidence 422247889999998 33322111 111221 1346789999987666543321 22222221111 111
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHc
Q 038902 302 LFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALR 341 (997)
Q Consensus 302 lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 341 (997)
.|..+.-.... ....|-.+++++ |+|-.+..-|..+.
T Consensus 182 ~~~Y~l~~G~~--~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 TMLYKVEKGAC--DQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred eEEEEEeeCCC--CCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 12222211111 123567777766 88888877776554
No 470
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.95 E-value=0.075 Score=54.33 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
++++|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999964
No 471
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.94 E-value=0.074 Score=51.04 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEE
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVI 197 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~ 197 (997)
|++|+|+.|+||||++.++....+.+ .+.. +.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 58999999999999999999998753 4555 4443
No 472
>PRK13947 shikimate kinase; Provisional
Probab=93.93 E-value=0.048 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999875
No 473
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.92 E-value=0.048 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.849 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+|+|.|..|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 474
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.92 E-value=0.029 Score=33.58 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=12.9
Q ss_pred cccEEEecCcccCCCCccccc
Q 038902 544 EINFLDLSYTNISTLPGSIEC 564 (997)
Q Consensus 544 ~L~~L~l~~~~i~~lp~~l~~ 564 (997)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.90 E-value=0.48 Score=49.17 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
.-..+.|.|.+|+||||+|.+++...-. .-.. +|++.... ..++... +++++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~--~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES--RESIIRQ-AAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC--HHHHHHH-HHHhCC
Confidence 4579999999999999999998765432 2234 78876433 3444433 444443
No 476
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.89 E-value=0.073 Score=57.98 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=44.4
Q ss_pred CCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 136 IHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 136 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+++..++|.+..+..|+..+.+..+.-|.|.|..|+||||+|+.+++-...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4456689999999999988887877887889999999999999999877643
No 477
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.86 E-value=0.22 Score=59.80 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLA 232 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (997)
.-+++-|+|+.|+||||||.+++..... .-.. +|++....++. ..+++++.+.+ ....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 3578899999999999999887765543 2234 99988877763 36777776532 122233344444
Q ss_pred HHHHhcCCcEEEEEccccc
Q 038902 233 KRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~ 251 (997)
..+.+ ++--|||+|.+..
T Consensus 132 ~lv~~-~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRS-GALDIVVIDSVAA 149 (790)
T ss_pred HHhhc-CCCeEEEEcchhh
Confidence 44444 5677899998854
No 478
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.86 E-value=0.3 Score=52.25 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
-.++.|.|++|+||||++.+++...........+|++... ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 4588999999999999999998876543234448887655 345666665544
No 479
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.36 Score=46.02 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=27.7
Q ss_pred hccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 156 LKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 156 l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+...+..+|.+.|..|.||||+|.++++.+..
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999875
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.85 E-value=0.044 Score=54.44 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.84 E-value=0.055 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999998753
No 482
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.82 E-value=0.36 Score=62.43 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.++=|.++|++|+|||.||+++|.+...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999988654
No 483
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.82 E-value=0.045 Score=52.49 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
++.++|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 484
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.81 E-value=0.24 Score=47.35 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc---CCCHHHHHHHHHHHh-----CCC-----CchhhH----
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE---SSDLRRIQDKIAELL-----KFK-----IEEEDE---- 224 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~---~~~~~~~~~~i~~~l-----~~~-----~~~~~~---- 224 (997)
..|-|++..|.||||+|-..+-+.... .+...++-.-+ ......+++.+ ..+ +.. .+....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888888999999999999876543 33333333222 23333333333 000 110 011111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc-----ccccccccccCCCCCceEEEEeeCChh
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGEERKRCKVIVTSRRLD 279 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~~ 279 (997)
.......++.+.. ++-=|+|||++-.. .+.+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~-~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIAS-GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233344443 55679999998554 223334333444455678999999853
No 485
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.80 E-value=0.12 Score=53.61 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHH
Q 038902 150 NSIMKLLK--DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQD 209 (997)
Q Consensus 150 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~ 209 (997)
.+++..+. .++..+|+|.|.+|+|||||...+...+..+.+--. +=|+-|.+++--.++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 44444443 457889999999999999999999999876544222 5555566665444443
No 486
>PRK14530 adenylate kinase; Provisional
Probab=93.80 E-value=0.054 Score=55.55 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.|.|+|++|+||||+|+.+++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998763
No 487
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.77 E-value=0.058 Score=54.55 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
...+|.++||+|.||||..++++.....+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 35688899999999999999999887763
No 488
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.76 E-value=0.087 Score=57.30 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=39.4
Q ss_pred CccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 137 HSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 137 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+..++|.+..++.+.-.+.+.+..-+.+.|+.|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3455789999998888755544445679999999999999999998775
No 489
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.76 E-value=0.12 Score=57.51 Aligned_cols=100 Identities=19% Similarity=0.372 Sum_probs=56.4
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH--HHHHHHHhCCCCchhhH-
Q 038902 148 ALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI--QDKIAELLKFKIEEEDE- 224 (997)
Q Consensus 148 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~--~~~i~~~l~~~~~~~~~- 224 (997)
..+.+++.+.......+-|.|+||+|||++.+++.+..+.. -..+-+.++.......+ -..+-+.++........
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~ 86 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKS 86 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cceEEEecchHHHHHhccCCcchHHhcCccccccccc
Confidence 34555666665667889999999999999999999988752 22233333332222222 11223333333221111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 ---LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ---~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.......++.++ +-=+||+|++...
T Consensus 87 ~~~~~~~~~~~~~l~---~~~~lIiDEism~ 114 (364)
T PF05970_consen 87 QCKISKNSRLRERLR---KADVLIIDEISMV 114 (364)
T ss_pred cccccccchhhhhhh---hheeeecccccch
Confidence 112234445555 4458899998654
No 490
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.75 E-value=0.058 Score=52.98 Aligned_cols=26 Identities=50% Similarity=0.592 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+.|.|+|+.|+||||+|+.+++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998753
No 491
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.38 Score=48.08 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHh-------------ccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 141 DLTHSSKALNSIMKLL-------------KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l-------------~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++.|-+-+.+++.+.. .-+.++-|..+|++|.|||-||++|+++-..
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 5566666666665544 2245788899999999999999999987543
No 492
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.73 E-value=0.44 Score=50.28 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE 200 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~ 200 (997)
.-.++.|.|++|+|||++|.+++...... ...+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 35689999999999999999987765332 22338888764
No 493
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.72 E-value=0.15 Score=52.70 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc-------------------
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------------------- 220 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------------------- 220 (997)
.-.++.|.|++|+|||++|.++....-....-.+++++..+. ..++.+.+. .++.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 357999999999999999999876543320122377776444 455555433 3333110
Q ss_pred --hhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 221 --EEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 221 --~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..+.......+.+.+.+ .+.-.+|+|.+...
T Consensus 95 ~~~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEE-LKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHH-HTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHh-cCCCEEEEECHHHH
Confidence 12334555666666665 34468888877543
No 494
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.72 E-value=0.16 Score=55.60 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.2
Q ss_pred ccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 142 LTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 142 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|+...+.++.+.+.. ..-.-|.|+|..|+||+++|+.+.+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 45666677777666632 2345679999999999999999987543
No 495
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.033 Score=33.35 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=11.3
Q ss_pred cccEEEecCCcccccCcccc
Q 038902 589 ELVILILRGSSIRELPKGLE 608 (997)
Q Consensus 589 ~L~~L~L~~~~l~~lp~~~~ 608 (997)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666665655444
No 496
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.66 E-value=0.22 Score=56.77 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=67.2
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHH-HHHHHHHHHhhhCCCce-EEEEEccCCCH--HHHHHHHHHHhCCCCch---
Q 038902 149 LNSIMKLLKDDKVNIIGLQGPGGIGKST-LMEQLAKQIDTIAPHDK-AHVIVAESSDL--RRIQDKIAELLKFKIEE--- 221 (997)
Q Consensus 149 ~~~l~~~l~~~~~~vi~I~G~~GiGKTt-La~~~~~~~~~~~~f~~-~wv~v~~~~~~--~~~~~~i~~~l~~~~~~--- 221 (997)
.++|++.+.+ -+||.|||-.|.|||| ||+.+|++- |.. -.|-+.++..+ ..+.+.+++.++.....
T Consensus 361 R~~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 361 RDQLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 3455555543 3799999999999988 666666552 433 45556665544 34456677777543210
Q ss_pred ------------------hhHHHHHHHHHHHHHhcCCcEEEEEccccccc-ccccccccc---CCCCCceEEEEeeCCh
Q 038902 222 ------------------EDELQRRATLAKRLRERTKKVLIILDDVREKI-NLAVSGIPY---GEERKRCKVIVTSRRL 278 (997)
Q Consensus 222 ------------------~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-~~~~l~~~~---~~~~~gs~iivTtr~~ 278 (997)
.+..-+...+.+..-+ |=-.||+|...+.. +.+-+...+ ......-|+|||+-..
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~--kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLD--KYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhh--heeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 0111223333333333 66689999987652 222111111 1223456899998643
No 497
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.34 Score=56.49 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCce-EEEEEccCCCHHHHHHHHH
Q 038902 144 HSSKALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDK-AHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~-~wv~v~~~~~~~~~~~~i~ 212 (997)
+++.-+-.+.+.+.-. .-.++.+.|..|+||||+++.++.....+ ..++| =.++-+...+..++.....
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~ 484 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFS 484 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHH
Confidence 4555555566666432 13578899999999999999999987652 12233 2222222222222221111
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc-------cc------cccc-c-cccCCCCCceEEEEeeCC
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK-------IN------LAVS-G-IPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~-------~~------~~~l-~-~~~~~~~~gs~iivTtr~ 277 (997)
+. -. -....|.+-+++-. ++ .+.. . ..++...++..+|.||.+
T Consensus 485 ~a--------------------~~--~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 485 RA--------------------RR--CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS 542 (953)
T ss_pred HH--------------------hh--cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccc
Confidence 11 11 13333333332110 00 0000 0 112222344455555543
Q ss_pred -hhhhhcCCC---eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh
Q 038902 278 -LDVCSKMSD---VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 278 -~~v~~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl 331 (997)
+++...+.. +.++++.+++++-.++|+.......-. .+.-.+++++++.|.-+
T Consensus 543 ~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 543 IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSF 599 (953)
T ss_pred cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCH
Confidence 344443333 789999999999999999887533311 12234667788887643
No 498
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.62 E-value=0.06 Score=51.85 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
|.|+|++|+||||+|+.+++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 499
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=93.58 E-value=0.28 Score=55.61 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCCC------chhhH------
Q 038902 159 DKVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFKI------EEEDE------ 224 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~~------~~~~~------ 224 (997)
..-+.++|.|..|+||||+| ..+.+... ..+.|+++-+.+. ..+.++...+...-..+. ..++.
T Consensus 141 grGQR~~Ifg~~gtGKT~lal~~I~~q~~--~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~a 218 (507)
T PRK07165 141 GKGQRELIIGDRQTGKTHIALNTIINQKN--TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLA 218 (507)
T ss_pred ccCCEEEeecCCCCCccHHHHHHHHHhcC--CCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHH
Confidence 34578999999999999995 56666532 2455577777655 456666666655422210 11111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++. +++|+|+||+...
T Consensus 219 p~~a~tiAEyfrd~-~dVLlv~DdLTr~ 245 (507)
T PRK07165 219 PYVAMAHAENISYN-DDVLIVFDDLTKH 245 (507)
T ss_pred HHHHHHHHHHHHhc-CceEEEEcChHHH
Confidence 22344577888886 9999999998654
No 500
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.54 E-value=0.053 Score=50.96 Aligned_cols=24 Identities=50% Similarity=0.935 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|+|+|+.|+|||||++.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998653
Done!