Query 038902
Match_columns 997
No_of_seqs 452 out of 4783
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.1E-44 1.1E-48 422.7 25.3 305 143-479 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-37 4.3E-42 366.7 14.4 285 141-471 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2E-35 6.8E-40 387.4 24.0 307 141-477 125-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.6E-33 1.6E-37 333.5 27.8 306 138-474 122-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-31 4.7E-36 322.6 28.6 458 490-980 25-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.7E-31 2.6E-35 316.1 28.3 465 490-980 26-559 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-30 8.9E-35 315.8 32.6 156 490-646 18-181 (680)
8 3rgz_A Protein brassinosteroid 100.0 8.3E-31 2.8E-35 322.9 26.5 357 496-881 177-550 (768)
9 2z63_A TOLL-like receptor 4, v 100.0 2.3E-30 7.8E-35 309.8 27.1 443 490-980 21-530 (570)
10 3rgz_A Protein brassinosteroid 100.0 3.2E-30 1.1E-34 317.7 26.0 440 497-985 77-555 (768)
11 3t6q_A CD180 antigen; protein- 100.0 7.1E-30 2.4E-34 307.7 26.5 353 499-879 14-410 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-29 9.7E-34 302.4 30.4 426 499-980 13-509 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-29 3.6E-34 302.4 25.2 452 490-980 19-509 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 4.5E-29 1.5E-33 298.6 26.0 426 500-985 10-510 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-28 4.3E-33 293.1 28.8 403 496-948 49-510 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-29 9.8E-34 296.3 20.3 436 500-980 3-480 (520)
17 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-29 2.3E-33 309.1 24.2 441 490-979 18-537 (844)
18 4eco_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 300.3 18.2 387 557-982 197-633 (636)
19 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-28 1.6E-32 295.8 27.5 281 500-795 7-307 (680)
20 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-28 7.4E-33 304.6 22.7 441 496-980 47-559 (844)
21 4ecn_A Leucine-rich repeat pro 100.0 2.1E-28 7.3E-33 298.4 20.1 387 557-982 439-873 (876)
22 4eco_A Uncharacterized protein 100.0 5E-28 1.7E-32 291.1 18.8 363 537-949 200-633 (636)
23 1o6v_A Internalin A; bacterial 99.9 3.9E-26 1.3E-30 264.8 28.5 325 490-879 39-363 (466)
24 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-26 2.3E-30 267.4 30.8 412 522-986 3-461 (520)
25 4ecn_A Leucine-rich repeat pro 99.9 6.3E-27 2.2E-31 285.4 22.4 353 507-920 435-838 (876)
26 1o6v_A Internalin A; bacterial 99.9 4.1E-26 1.4E-30 264.7 27.1 343 517-946 44-386 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-26 2.3E-30 269.7 25.2 421 498-980 32-509 (562)
28 4g8a_A TOLL-like receptor 4; l 99.9 8.5E-26 2.9E-30 274.0 22.1 146 490-636 45-197 (635)
29 4fmz_A Internalin; leucine ric 99.9 2E-24 6.7E-29 240.7 23.4 302 496-880 43-344 (347)
30 4g8a_A TOLL-like receptor 4; l 99.9 5.5E-24 1.9E-28 258.1 27.7 144 501-646 35-183 (635)
31 4fmz_A Internalin; leucine ric 99.9 9E-24 3.1E-28 235.3 26.0 189 496-705 65-254 (347)
32 2id5_A Lingo-1, leucine rich r 99.9 1.2E-23 4E-28 245.2 26.7 281 500-794 14-306 (477)
33 3v47_A TOLL-like receptor 5B a 99.9 5.9E-24 2E-28 246.4 23.9 367 501-924 14-410 (455)
34 3bz5_A Internalin-J, INLJ; leu 99.9 7E-24 2.4E-28 243.6 24.2 140 496-646 41-180 (457)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.9E-24 2.3E-28 252.3 24.6 408 490-947 45-509 (562)
36 3o6n_A APL1; leucine-rich repe 99.9 3.6E-23 1.2E-27 234.2 26.3 305 516-920 42-350 (390)
37 3bz5_A Internalin-J, INLJ; leu 99.9 9.8E-24 3.4E-28 242.4 20.3 310 517-919 40-349 (457)
38 1jl5_A Outer protein YOPM; leu 99.9 1.8E-23 6.2E-28 240.0 18.2 260 496-794 10-287 (454)
39 3v47_A TOLL-like receptor 5B a 99.9 1.8E-23 6.2E-28 242.3 17.7 366 490-881 24-407 (455)
40 2id5_A Lingo-1, leucine rich r 99.9 9.4E-23 3.2E-27 237.6 23.3 292 490-795 25-331 (477)
41 1jl5_A Outer protein YOPM; leu 99.9 2.7E-23 9.3E-28 238.5 18.1 299 517-879 9-327 (454)
42 3oja_B Anopheles plasmodium-re 99.9 7.2E-23 2.5E-27 244.8 22.3 305 516-880 48-356 (597)
43 3o6n_A APL1; leucine-rich repe 99.9 8.7E-23 3E-27 231.1 20.2 301 496-854 44-350 (390)
44 3ogk_B Coronatine-insensitive 99.9 2E-23 6.9E-28 250.6 12.3 380 517-946 110-524 (592)
45 3oja_B Anopheles plasmodium-re 99.9 3.5E-22 1.2E-26 238.8 20.9 301 496-854 50-356 (597)
46 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-21 1.5E-25 211.8 20.5 290 520-879 34-330 (332)
47 1xku_A Decorin; proteoglycan, 99.9 1.7E-20 6E-25 206.9 24.4 239 520-826 32-273 (330)
48 1xku_A Decorin; proteoglycan, 99.9 1.4E-20 4.7E-25 207.7 20.6 290 497-826 31-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 6.7E-21 2.3E-25 210.3 16.3 289 497-827 33-331 (332)
50 2p1m_B Transport inhibitor res 99.8 4.5E-22 1.5E-26 239.0 6.9 129 517-646 103-245 (594)
51 2p1m_B Transport inhibitor res 99.8 1.2E-21 3.9E-26 235.5 8.5 396 496-942 104-538 (594)
52 3ogk_B Coronatine-insensitive 99.8 5.6E-22 1.9E-26 238.1 5.1 401 496-944 111-547 (592)
53 2z80_A TOLL-like receptor 2, v 99.8 1.7E-20 5.9E-25 209.0 16.6 195 501-706 35-234 (353)
54 4fcg_A Uncharacterized protein 99.8 5E-20 1.7E-24 202.2 18.5 89 542-630 80-169 (328)
55 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-20 9.8E-25 203.0 14.4 247 519-829 50-304 (313)
56 3zyj_A Leucine-rich repeat-con 99.8 8.1E-20 2.8E-24 210.0 17.9 196 498-706 44-243 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 9.1E-20 3.1E-24 210.4 17.7 196 498-706 55-254 (452)
58 1ogq_A PGIP-2, polygalacturona 99.8 4.1E-20 1.4E-24 201.7 13.6 245 497-797 50-304 (313)
59 1z7x_W Ribonuclease inhibitor; 99.8 5.1E-21 1.7E-25 222.1 3.8 159 519-683 3-183 (461)
60 2z80_A TOLL-like receptor 2, v 99.8 6.8E-19 2.3E-23 196.1 20.4 277 516-854 28-312 (353)
61 4fcg_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 194.0 17.5 146 497-645 81-238 (328)
62 2z66_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 196.7 13.4 195 500-705 10-210 (306)
63 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-18 7.9E-23 203.4 24.1 252 497-795 40-295 (622)
64 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.5E-23 185.7 19.2 188 500-699 14-206 (285)
65 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-18 1.8E-22 200.2 21.9 256 519-854 40-295 (622)
66 1ozn_A Reticulon 4 receptor; N 99.8 1E-18 3.5E-23 188.3 13.7 206 490-706 25-237 (285)
67 3zyj_A Leucine-rich repeat-con 99.8 3.3E-18 1.1E-22 196.5 18.7 230 490-773 57-293 (440)
68 3zyi_A Leucine-rich repeat-con 99.8 3.6E-18 1.2E-22 197.0 18.9 233 490-776 68-307 (452)
69 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-19 3.6E-24 211.0 4.5 355 497-880 3-409 (461)
70 2z66_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 189.8 12.1 169 522-704 10-185 (306)
71 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-19 5.5E-24 197.6 4.0 170 517-705 32-202 (317)
72 3o53_A Protein LRIM1, AGAP0063 99.7 2.1E-19 7.3E-24 196.6 1.1 264 521-831 12-277 (317)
73 2o6q_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 172.2 19.2 198 497-706 16-217 (270)
74 2z62_A TOLL-like receptor 4, v 99.7 2.1E-17 7.3E-22 177.0 13.7 205 490-706 21-236 (276)
75 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5.2E-21 172.8 19.0 192 494-706 38-229 (308)
76 3oja_A Leucine-rich immune mol 99.7 6E-18 2E-22 196.1 8.3 170 517-705 32-202 (487)
77 3rfs_A Internalin B, repeat mo 99.7 1.1E-17 3.7E-22 178.7 9.5 147 496-645 40-190 (272)
78 2z62_A TOLL-like receptor 4, v 99.7 2.3E-16 8E-21 168.9 19.7 223 501-774 11-239 (276)
79 1p9a_G Platelet glycoprotein I 99.7 2.2E-16 7.4E-21 169.8 17.9 197 496-706 9-207 (290)
80 2xwt_C Thyrotropin receptor; s 99.7 5.8E-17 2E-21 169.5 12.9 131 506-639 20-158 (239)
81 1h6u_A Internalin H; cell adhe 99.7 6.8E-17 2.3E-21 175.6 13.9 151 516-685 38-188 (308)
82 2o6q_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 165.4 18.0 156 519-688 16-175 (270)
83 1wwl_A Monocyte differentiatio 99.7 5.1E-18 1.8E-22 185.2 1.9 180 497-686 43-244 (312)
84 1p9a_G Platelet glycoprotein I 99.7 8.4E-16 2.9E-20 165.2 15.6 176 517-706 8-184 (290)
85 2xwt_C Thyrotropin receptor; s 99.6 4.3E-16 1.5E-20 162.8 10.8 199 490-703 25-235 (239)
86 3oja_A Leucine-rich immune mol 99.6 2.3E-16 7.8E-21 182.8 8.9 207 496-722 33-248 (487)
87 4ay9_X Follicle-stimulating ho 99.6 1.3E-15 4.5E-20 168.9 14.4 237 522-825 12-255 (350)
88 3m19_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 155.7 17.6 173 498-682 15-191 (251)
89 1h6t_A Internalin B; cell adhe 99.6 1.3E-15 4.4E-20 163.9 12.9 171 495-684 44-214 (291)
90 1w5s_A Origin recognition comp 99.6 1.2E-14 4E-19 165.6 21.3 304 140-466 22-387 (412)
91 1h6t_A Internalin B; cell adhe 99.6 6.6E-15 2.3E-19 158.4 17.7 188 498-706 25-212 (291)
92 3rfs_A Internalin B, repeat mo 99.6 1E-14 3.6E-19 155.4 17.9 211 498-722 20-233 (272)
93 1wwl_A Monocyte differentiatio 99.6 3.3E-16 1.1E-20 170.8 6.1 197 497-706 63-286 (312)
94 2ast_B S-phase kinase-associat 99.6 7E-16 2.4E-20 170.5 7.1 122 521-646 49-178 (336)
95 2qen_A Walker-type ATPase; unk 99.6 8.3E-14 2.8E-18 154.8 20.9 284 141-470 13-348 (350)
96 1m9s_A Internalin B; cell inva 99.6 1.3E-14 4.5E-19 171.2 15.1 175 495-688 41-215 (605)
97 3m19_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 149.3 16.9 156 490-646 28-189 (251)
98 4ay9_X Follicle-stimulating ho 99.6 3.3E-14 1.1E-18 157.6 16.5 223 589-878 31-255 (350)
99 1m9s_A Internalin B; cell inva 99.6 6.5E-15 2.2E-19 173.8 11.0 194 492-706 16-209 (605)
100 1xeu_A Internalin C; cellular 99.5 1E-14 3.5E-19 154.2 11.3 177 491-687 13-189 (263)
101 2ca6_A RAN GTPase-activating p 99.5 7E-16 2.4E-20 173.9 1.7 85 517-601 30-135 (386)
102 3goz_A Leucine-rich repeat-con 99.5 7.8E-15 2.7E-19 163.6 9.3 121 525-646 4-148 (362)
103 2o6s_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 145.1 12.7 165 500-683 10-178 (208)
104 3e6j_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 144.3 15.3 147 498-646 20-169 (229)
105 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.1E-19 157.5 10.5 159 519-685 64-239 (310)
106 2ast_B S-phase kinase-associat 99.5 7.4E-15 2.5E-19 162.2 6.8 174 497-680 70-257 (336)
107 2v9t_B SLIT homolog 2 protein 99.5 9.2E-14 3.1E-18 142.6 14.1 145 500-646 14-162 (220)
108 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.6E-18 159.8 16.7 183 497-706 59-242 (571)
109 4glp_A Monocyte differentiatio 99.5 2.8E-14 9.6E-19 155.3 9.5 148 498-646 92-261 (310)
110 4ezg_A Putative uncharacterize 99.5 6.5E-14 2.2E-18 141.2 11.5 149 517-682 42-193 (197)
111 2fna_A Conserved hypothetical 99.5 7.6E-13 2.6E-17 147.4 19.5 287 141-469 14-355 (357)
112 4ezg_A Putative uncharacterize 99.5 2.7E-13 9.2E-18 136.7 13.9 149 492-646 39-191 (197)
113 3cvr_A Invasion plasmid antige 99.5 3.2E-13 1.1E-17 157.4 16.4 190 519-777 59-248 (571)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 2.7E-13 9.3E-18 139.1 14.0 145 500-646 14-163 (220)
115 2ca6_A RAN GTPase-activating p 99.5 5.9E-14 2E-18 158.1 8.2 140 537-683 26-200 (386)
116 1xeu_A Internalin C; cellular 99.4 6.9E-13 2.4E-17 140.1 14.5 143 496-646 40-182 (263)
117 3goz_A Leucine-rich repeat-con 99.4 2.5E-13 8.7E-18 151.3 10.0 203 496-705 21-264 (362)
118 2xot_A Amphoterin-induced prot 99.4 6.5E-13 2.2E-17 147.7 12.8 145 500-646 21-173 (361)
119 2v9t_B SLIT homolog 2 protein 99.4 1E-12 3.5E-17 134.8 13.3 120 522-645 14-137 (220)
120 2o6s_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 136.0 11.0 121 522-646 10-134 (208)
121 2xot_A Amphoterin-induced prot 99.4 7.6E-13 2.6E-17 147.2 12.5 156 490-646 32-199 (361)
122 2v1u_A Cell division control p 99.4 8.2E-12 2.8E-16 140.7 19.9 290 140-453 19-350 (387)
123 3e6j_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 131.7 14.7 137 490-626 33-174 (229)
124 1dce_A Protein (RAB geranylger 99.3 1.6E-14 5.3E-19 169.6 -6.0 178 497-687 349-550 (567)
125 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 126.8 9.8 125 519-646 24-157 (168)
126 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4.1E-17 125.3 8.1 122 519-643 17-147 (149)
127 2ell_A Acidic leucine-rich nuc 99.3 2.4E-12 8.2E-17 126.0 9.8 131 496-629 23-164 (168)
128 2v70_A SLIT-2, SLIT homolog 2 99.3 6.3E-12 2.1E-16 128.9 13.1 137 490-626 25-168 (220)
129 2qby_B CDC6 homolog 3, cell di 99.3 6.9E-11 2.4E-15 132.9 21.4 282 140-453 20-338 (384)
130 1fnn_A CDC6P, cell division co 99.3 9.9E-11 3.4E-15 131.9 22.8 289 140-454 17-351 (389)
131 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.7E-17 128.2 7.1 128 516-646 16-150 (176)
132 3qfl_A MLA10; coiled-coil, (CC 99.3 3.9E-12 1.3E-16 113.4 6.7 81 13-100 1-82 (115)
133 2je0_A Acidic leucine-rich nuc 99.3 6.1E-12 2.1E-16 120.3 8.7 123 496-620 16-149 (149)
134 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.5E-16 121.8 12.0 119 523-645 14-135 (193)
135 2qby_A CDC6 homolog 1, cell di 99.3 6.5E-11 2.2E-15 133.2 17.1 290 140-453 20-347 (386)
136 1w8a_A SLIT protein; signaling 99.2 3.2E-11 1.1E-15 120.7 12.2 126 500-626 11-141 (192)
137 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4E-16 122.1 8.4 125 496-622 18-151 (176)
138 2wfh_A SLIT homolog 2 protein 99.2 6.2E-11 2.1E-15 118.5 13.7 122 500-623 13-138 (193)
139 4b8c_D Glucose-repressible alc 99.2 3.1E-12 1.1E-16 155.0 4.9 105 517-622 222-327 (727)
140 2o6r_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 117.3 12.6 125 500-625 10-138 (177)
141 3sb4_A Hypothetical leucine ri 99.2 6.9E-12 2.4E-16 137.6 6.4 264 490-790 18-327 (329)
142 4b8c_D Glucose-repressible alc 99.2 2E-11 6.7E-16 148.0 10.5 149 496-647 172-327 (727)
143 1dce_A Protein (RAB geranylger 99.2 5.2E-11 1.8E-15 139.6 12.6 120 520-642 442-566 (567)
144 1njg_A DNA polymerase III subu 99.2 1.8E-10 6.2E-15 120.5 15.4 201 134-340 17-231 (250)
145 1w8a_A SLIT protein; signaling 99.2 5E-11 1.7E-15 119.2 10.4 121 522-646 11-136 (192)
146 2chg_A Replication factor C sm 99.2 4.2E-10 1.4E-14 115.8 16.5 184 137-337 14-204 (226)
147 1ds9_A Outer arm dynein; leuci 99.1 1.5E-12 5.3E-17 131.2 -3.3 106 538-646 43-150 (198)
148 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.1E-15 112.8 12.5 122 521-646 9-134 (177)
149 4fdw_A Leucine rich hypothetic 99.1 5.6E-10 1.9E-14 124.9 16.7 241 518-795 112-356 (401)
150 1ds9_A Outer arm dynein; leuci 99.1 2.5E-12 8.4E-17 129.7 -4.1 143 498-642 24-180 (198)
151 3sb4_A Hypothetical leucine ri 99.1 4.4E-10 1.5E-14 123.1 11.7 57 518-575 100-157 (329)
152 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 106.9 10.8 98 522-622 15-116 (174)
153 1sxj_B Activator 1 37 kDa subu 99.0 2.3E-09 7.9E-14 117.2 12.5 191 134-339 15-212 (323)
154 4fdw_A Leucine rich hypothetic 99.0 2.9E-09 9.9E-14 119.1 13.3 256 497-793 113-379 (401)
155 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 5.8E-14 105.9 10.0 103 500-603 15-120 (174)
156 3g39_A Variable lymphocyte rec 98.9 2.5E-09 8.5E-14 104.4 10.6 99 521-622 11-113 (170)
157 3g39_A Variable lymphocyte rec 98.9 2E-09 7E-14 105.0 10.0 101 500-601 12-115 (170)
158 1hqc_A RUVB; extended AAA-ATPa 98.9 6.3E-09 2.2E-13 113.7 13.4 179 135-341 7-215 (324)
159 1iqp_A RFCS; clamp loader, ext 98.9 2.6E-09 8.8E-14 117.0 9.4 189 133-340 18-215 (327)
160 3te6_A Regulatory protein SIR3 98.9 2.3E-08 7.9E-13 106.3 15.7 167 142-308 22-212 (318)
161 4fs7_A Uncharacterized protein 98.8 1.1E-08 3.7E-13 115.1 12.6 55 734-792 230-284 (394)
162 4fs7_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 111.2 14.5 281 517-852 69-375 (394)
163 2chq_A Replication factor C sm 98.7 1E-07 3.5E-12 103.7 14.4 185 133-337 10-204 (319)
164 1jr3_A DNA polymerase III subu 98.7 2.8E-07 9.7E-12 102.7 16.8 199 133-337 9-221 (373)
165 1jbk_A CLPB protein; beta barr 98.6 1.2E-07 4.2E-12 94.5 10.9 151 139-303 21-194 (195)
166 3un9_A NLR family member X1; l 98.6 5.5E-09 1.9E-13 115.7 0.1 134 543-683 101-252 (372)
167 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.8E-12 104.8 9.4 97 524-622 13-114 (347)
168 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.2E-12 103.8 9.2 98 546-646 11-113 (347)
169 1d2n_A N-ethylmaleimide-sensit 98.5 4.4E-06 1.5E-10 88.3 20.2 194 141-367 34-264 (272)
170 1sxj_D Activator 1 41 kDa subu 98.5 5.4E-07 1.8E-11 99.6 12.9 198 132-336 29-234 (353)
171 3bos_A Putative DNA replicatio 98.5 1.9E-07 6.6E-12 96.9 8.3 171 139-336 27-216 (242)
172 3e4g_A ATP synthase subunit S, 98.5 8.1E-08 2.8E-12 92.0 4.7 93 843-950 61-154 (176)
173 4gt6_A Cell surface protein; l 98.5 1.5E-06 5E-11 97.6 15.4 296 520-851 65-386 (394)
174 3e4g_A ATP synthase subunit S, 98.5 4.6E-08 1.6E-12 93.7 2.5 89 817-924 62-154 (176)
175 3pfi_A Holliday junction ATP-d 98.4 3.4E-06 1.2E-10 92.3 17.3 176 132-336 21-226 (338)
176 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-06 3.6E-11 97.2 11.7 197 132-336 6-236 (354)
177 1sxj_A Activator 1 95 kDa subu 98.4 7.1E-07 2.4E-11 103.4 10.7 196 134-339 33-255 (516)
178 3pvs_A Replication-associated 98.4 6.4E-06 2.2E-10 92.8 17.8 178 131-334 17-212 (447)
179 3d8b_A Fidgetin-like protein 1 98.4 1.3E-05 4.5E-10 88.0 19.6 184 134-338 78-296 (357)
180 3un9_A NLR family member X1; l 98.3 6.2E-08 2.1E-12 107.2 0.2 151 496-647 71-250 (372)
181 3syl_A Protein CBBX; photosynt 98.3 3.3E-06 1.1E-10 91.2 12.9 150 141-308 32-218 (309)
182 4gt6_A Cell surface protein; l 98.3 5E-06 1.7E-10 93.2 14.6 304 531-880 51-368 (394)
183 3h4m_A Proteasome-activating n 98.3 1.1E-05 3.8E-10 85.9 16.3 175 139-334 16-228 (285)
184 3eie_A Vacuolar protein sortin 98.3 2.7E-05 9.3E-10 84.3 19.2 178 139-337 17-228 (322)
185 3uk6_A RUVB-like 2; hexameric 98.3 8.4E-06 2.9E-10 90.5 15.5 191 139-334 43-300 (368)
186 1sxj_C Activator 1 40 kDa subu 98.3 6.8E-06 2.3E-10 89.9 14.1 179 133-332 18-207 (340)
187 2z4s_A Chromosomal replication 98.2 3.8E-06 1.3E-10 94.9 11.7 178 141-334 106-303 (440)
188 2qp9_X Vacuolar protein sortin 98.2 3.2E-05 1.1E-09 84.8 18.3 179 138-337 49-261 (355)
189 1xwi_A SKD1 protein; VPS4B, AA 98.2 2.9E-05 1E-09 83.8 17.0 179 140-338 12-224 (322)
190 2qz4_A Paraplegin; AAA+, SPG7, 98.2 6.6E-05 2.3E-09 78.6 19.1 176 141-336 7-221 (262)
191 3u61_B DNA polymerase accessor 98.2 1E-05 3.6E-10 87.9 12.8 175 133-332 19-211 (324)
192 1a5t_A Delta prime, HOLB; zinc 98.1 2.9E-05 1E-09 84.4 16.1 166 145-336 7-204 (334)
193 2p65_A Hypothetical protein PF 98.1 9.4E-06 3.2E-10 80.1 10.6 49 139-187 21-69 (187)
194 3vfd_A Spastin; ATPase, microt 98.1 4.8E-05 1.6E-09 84.7 17.2 179 138-337 113-326 (389)
195 3b9p_A CG5977-PA, isoform A; A 98.1 7.3E-05 2.5E-09 80.0 18.0 180 137-337 18-233 (297)
196 1l8q_A Chromosomal replication 98.1 2E-05 6.8E-10 85.6 13.5 167 145-331 19-202 (324)
197 2ra8_A Uncharacterized protein 98.0 4.5E-06 1.5E-10 91.4 5.9 58 537-596 166-227 (362)
198 2zan_A Vacuolar protein sortin 98.0 0.00016 5.3E-09 81.8 18.2 179 139-337 133-345 (444)
199 3pxg_A Negative regulator of g 97.9 5.4E-05 1.9E-09 86.2 13.1 147 139-308 179-339 (468)
200 4h09_A Hypothetical leucine ri 97.9 9.4E-05 3.2E-09 82.3 14.8 86 733-832 262-347 (379)
201 4h09_A Hypothetical leucine ri 97.9 0.00017 5.9E-09 80.1 16.4 109 733-859 239-347 (379)
202 3ec2_A DNA replication protein 97.9 2E-05 6.7E-10 77.3 7.2 117 145-278 19-143 (180)
203 1qvr_A CLPB protein; coiled co 97.8 5.7E-05 1.9E-09 93.1 11.8 171 141-326 171-368 (854)
204 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.6E-10 79.5 4.0 62 518-579 35-106 (185)
205 3n70_A Transport activator; si 97.8 1.9E-05 6.4E-10 74.2 5.0 109 141-277 2-115 (145)
206 3rw6_A Nuclear RNA export fact 97.8 1.2E-05 4.1E-10 83.2 3.8 78 564-642 168-257 (267)
207 2ra8_A Uncharacterized protein 97.7 3.1E-05 1.1E-09 84.7 6.0 59 586-646 250-317 (362)
208 1io0_A Tropomodulin; LRR prote 97.7 2.1E-05 7.3E-10 77.3 3.9 86 537-622 30-134 (185)
209 1ofh_A ATP-dependent HSL prote 97.7 0.00041 1.4E-08 74.6 14.3 46 141-186 16-75 (310)
210 1in4_A RUVB, holliday junction 97.6 0.00044 1.5E-08 75.1 14.2 173 134-335 19-221 (334)
211 3cf0_A Transitional endoplasmi 97.6 0.00024 8.3E-09 75.8 12.0 168 141-332 16-223 (301)
212 3pxi_A Negative regulator of g 97.6 0.00022 7.5E-09 86.8 12.7 147 139-308 179-339 (758)
213 4b4t_J 26S protease regulatory 97.6 0.0017 5.9E-08 70.6 18.0 166 141-330 149-354 (405)
214 3hu3_A Transitional endoplasmi 97.6 0.0012 4.1E-08 75.0 17.1 175 140-335 204-413 (489)
215 2gno_A DNA polymerase III, gam 97.6 0.00055 1.9E-08 72.7 13.4 146 144-307 1-152 (305)
216 4b4t_K 26S protease regulatory 97.6 0.0014 4.8E-08 72.4 16.9 165 141-329 173-378 (428)
217 2w58_A DNAI, primosome compone 97.6 0.00012 4.1E-09 73.2 7.6 114 147-278 36-159 (202)
218 4fcw_A Chaperone protein CLPB; 97.5 0.00045 1.5E-08 74.3 12.3 105 141-252 18-131 (311)
219 4b4t_L 26S protease subunit RP 97.5 0.002 6.9E-08 71.3 17.4 166 141-330 182-387 (437)
220 4b4t_H 26S protease regulatory 97.5 0.0014 4.9E-08 72.2 16.0 168 141-330 210-415 (467)
221 4b4t_I 26S protease regulatory 97.5 0.0033 1.1E-07 68.6 18.5 166 141-330 183-388 (437)
222 3rw6_A Nuclear RNA export fact 97.5 9.6E-05 3.3E-09 76.4 5.6 79 540-618 167-258 (267)
223 4b4t_M 26S protease regulatory 97.4 0.0031 1.1E-07 69.7 17.8 165 141-329 182-386 (434)
224 2c9o_A RUVB-like 1; hexameric 97.4 0.001 3.4E-08 75.6 14.1 46 141-186 38-88 (456)
225 2ce7_A Cell division protein F 97.4 0.0016 5.5E-08 73.3 15.3 170 139-330 15-221 (476)
226 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0011 3.9E-08 80.7 15.1 151 141-307 187-362 (758)
227 1lv7_A FTSH; alpha/beta domain 97.4 0.0022 7.5E-08 66.6 15.3 175 138-334 10-222 (257)
228 2bjv_A PSP operon transcriptio 97.2 0.00034 1.2E-08 73.3 6.4 60 141-201 7-68 (265)
229 3co5_A Putative two-component 97.2 6.9E-05 2.3E-09 70.1 0.6 45 141-185 5-51 (143)
230 2kjq_A DNAA-related protein; s 97.2 0.00034 1.2E-08 65.7 5.2 40 160-200 35-74 (149)
231 3pxi_A Negative regulator of g 97.0 0.0008 2.7E-08 81.9 7.8 145 141-307 492-675 (758)
232 1ojl_A Transcriptional regulat 97.0 0.00068 2.3E-08 72.3 5.9 45 141-185 3-49 (304)
233 2r62_A Cell division protease 97.0 0.00035 1.2E-08 73.3 3.6 48 140-187 11-70 (268)
234 1qvr_A CLPB protein; coiled co 96.9 0.01 3.4E-07 73.1 16.5 46 141-186 559-613 (854)
235 3m6a_A ATP-dependent protease 96.8 0.0089 3.1E-07 69.1 14.4 152 141-307 82-266 (543)
236 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0042 1.4E-07 75.7 10.5 102 141-252 459-569 (758)
237 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.002 6.8E-08 67.6 5.7 70 161-252 123-194 (331)
238 3ice_A Transcription terminati 96.5 0.0026 8.9E-08 68.0 6.1 90 159-252 172-273 (422)
239 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0092 3.1E-07 60.7 10.1 114 161-278 23-168 (235)
240 2x8a_A Nuclear valosin-contain 96.5 0.047 1.6E-06 56.9 15.5 126 163-308 46-192 (274)
241 1ixz_A ATP-dependent metallopr 96.4 0.055 1.9E-06 55.8 15.4 146 163-329 51-220 (254)
242 3cf2_A TER ATPase, transitiona 96.4 0.011 3.8E-07 70.5 11.0 169 141-330 205-407 (806)
243 1n0w_A DNA repair protein RAD5 96.3 0.018 6.2E-07 58.9 10.9 90 161-252 24-131 (243)
244 1ypw_A Transitional endoplasmi 96.2 0.025 8.4E-07 68.7 13.4 149 140-308 204-386 (806)
245 1iy2_A ATP-dependent metallopr 96.2 0.045 1.6E-06 57.3 13.6 147 163-330 75-245 (278)
246 1sky_E F1-ATPase, F1-ATP synth 96.2 0.016 5.6E-07 64.2 10.3 90 162-251 152-256 (473)
247 1jr3_D DNA polymerase III, del 96.1 0.024 8.2E-07 61.6 11.6 160 154-335 11-183 (343)
248 3io5_A Recombination and repai 96.1 0.018 6E-07 60.1 9.4 86 162-252 29-123 (333)
249 3hr8_A Protein RECA; alpha and 96.1 0.018 6.3E-07 61.9 9.8 85 161-252 61-151 (356)
250 2z43_A DNA repair and recombin 96.0 0.022 7.6E-07 61.1 10.5 91 161-252 107-215 (324)
251 2qgz_A Helicase loader, putati 96.0 0.0087 3E-07 63.7 6.8 54 145-198 133-189 (308)
252 2dhr_A FTSH; AAA+ protein, hex 95.9 0.039 1.3E-06 62.5 12.3 169 139-330 30-236 (499)
253 3t15_A Ribulose bisphosphate c 95.9 0.017 5.8E-07 61.1 8.8 27 160-186 35-61 (293)
254 1j8m_F SRP54, signal recogniti 95.7 0.26 9E-06 51.7 17.0 57 161-218 98-155 (297)
255 2cvh_A DNA repair and recombin 95.7 0.016 5.5E-07 58.3 7.4 45 160-208 19-63 (220)
256 3dm5_A SRP54, signal recogniti 95.7 0.24 8.1E-06 54.7 17.1 28 160-187 99-126 (443)
257 2zr9_A Protein RECA, recombina 95.7 0.03 1E-06 60.5 9.5 86 160-252 60-151 (349)
258 1v5w_A DMC1, meiotic recombina 95.7 0.051 1.7E-06 58.7 11.4 92 160-252 121-231 (343)
259 2xxa_A Signal recognition part 95.6 0.47 1.6E-05 52.6 19.1 41 159-199 98-138 (433)
260 1rz3_A Hypothetical protein rb 95.6 0.012 4.2E-07 58.2 5.7 43 145-187 3-48 (201)
261 1u0j_A DNA replication protein 95.6 0.022 7.5E-07 58.2 7.5 37 149-185 90-128 (267)
262 1u94_A RECA protein, recombina 95.5 0.045 1.5E-06 59.2 10.2 86 160-252 62-153 (356)
263 3lda_A DNA repair protein RAD5 95.5 0.051 1.7E-06 59.7 10.7 90 161-252 178-285 (400)
264 2ck3_D ATP synthase subunit be 95.5 0.047 1.6E-06 60.3 10.3 93 159-252 151-265 (482)
265 3c8u_A Fructokinase; YP_612366 95.5 0.015 5.2E-07 57.9 5.9 40 148-187 7-48 (208)
266 1fx0_B ATP synthase beta chain 95.4 0.029 1E-06 62.2 8.4 92 160-252 164-278 (498)
267 2i1q_A DNA repair and recombin 95.4 0.06 2.1E-06 57.7 10.7 58 160-218 97-169 (322)
268 3l0o_A Transcription terminati 95.4 0.0081 2.8E-07 64.1 3.6 102 151-252 164-274 (427)
269 1xp8_A RECA protein, recombina 95.2 0.047 1.6E-06 59.2 9.2 85 161-252 74-164 (366)
270 4a74_A DNA repair and recombin 95.2 0.064 2.2E-06 54.2 9.8 56 161-217 25-85 (231)
271 2px0_A Flagellar biosynthesis 95.1 0.051 1.7E-06 57.2 9.0 39 160-198 104-142 (296)
272 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.023 8E-07 64.3 6.3 44 141-186 23-66 (500)
273 3kl4_A SRP54, signal recogniti 95.0 0.31 1.1E-05 53.8 15.1 28 160-187 96-123 (433)
274 3kb2_A SPBC2 prophage-derived 94.9 0.014 5E-07 56.0 3.8 25 162-186 2-26 (173)
275 1qhx_A CPT, protein (chloramph 94.9 0.014 4.8E-07 56.5 3.5 25 162-186 4-28 (178)
276 4eun_A Thermoresistant glucoki 94.9 0.017 5.8E-07 57.2 4.1 27 159-185 27-53 (200)
277 3vaa_A Shikimate kinase, SK; s 94.8 0.016 5.5E-07 57.3 3.9 27 160-186 24-50 (199)
278 1kgd_A CASK, peripheral plasma 94.8 0.016 5.6E-07 56.2 3.7 25 162-186 6-30 (180)
279 1pzn_A RAD51, DNA repair and r 94.8 0.086 3E-06 57.0 9.7 91 160-251 130-242 (349)
280 3uie_A Adenylyl-sulfate kinase 94.7 0.021 7.2E-07 56.5 4.3 28 159-186 23-50 (200)
281 2r44_A Uncharacterized protein 94.7 0.02 6.7E-07 61.9 4.4 44 141-186 28-71 (331)
282 1zp6_A Hypothetical protein AT 94.7 0.018 6.1E-07 56.5 3.7 25 160-184 8-32 (191)
283 2ehv_A Hypothetical protein PH 94.7 0.07 2.4E-06 54.7 8.5 25 160-184 29-53 (251)
284 1kag_A SKI, shikimate kinase I 94.7 0.015 5.2E-07 55.9 3.1 25 162-186 5-29 (173)
285 1ye8_A Protein THEP1, hypothet 94.6 0.021 7.2E-07 55.1 4.0 25 163-187 2-26 (178)
286 3lw7_A Adenylate kinase relate 94.6 0.018 6.2E-07 55.5 3.5 20 162-181 2-21 (179)
287 3trf_A Shikimate kinase, SK; a 94.6 0.02 6.8E-07 55.8 3.8 26 161-186 5-30 (185)
288 2hf9_A Probable hydrogenase ni 94.5 0.03 1E-06 56.6 5.1 41 147-187 24-64 (226)
289 3gqb_B V-type ATP synthase bet 94.5 0.044 1.5E-06 60.1 6.4 93 160-252 146-263 (464)
290 2ga8_A Hypothetical 39.9 kDa p 94.4 0.043 1.5E-06 58.4 6.1 44 144-187 3-50 (359)
291 3a00_A Guanylate kinase, GMP k 94.4 0.018 6.2E-07 56.2 2.9 26 162-187 2-27 (186)
292 1vma_A Cell division protein F 94.4 0.2 6.7E-06 52.8 11.1 29 159-187 102-130 (306)
293 3tr0_A Guanylate kinase, GMP k 94.3 0.023 7.7E-07 56.4 3.6 25 161-185 7-31 (205)
294 1ly1_A Polynucleotide kinase; 94.3 0.024 8.4E-07 54.8 3.7 22 162-183 3-24 (181)
295 3t61_A Gluconokinase; PSI-biol 94.3 0.02 7E-07 56.7 3.2 25 161-185 18-42 (202)
296 3vr4_D V-type sodium ATPase su 94.3 0.048 1.7E-06 59.8 6.3 93 160-252 150-260 (465)
297 1tue_A Replication protein E1; 94.3 0.043 1.5E-06 53.3 5.2 38 149-186 45-83 (212)
298 1odf_A YGR205W, hypothetical 3 94.3 0.043 1.5E-06 57.5 5.7 29 159-187 29-57 (290)
299 2ze6_A Isopentenyl transferase 94.3 0.027 9.1E-07 58.0 4.0 25 162-186 2-26 (253)
300 1knq_A Gluconate kinase; ALFA/ 94.3 0.028 9.6E-07 54.1 4.0 25 161-185 8-32 (175)
301 2yvu_A Probable adenylyl-sulfa 94.3 0.032 1.1E-06 54.3 4.5 28 160-187 12-39 (186)
302 3e70_C DPA, signal recognition 94.3 0.4 1.4E-05 51.0 13.3 57 159-217 127-185 (328)
303 3rfe_A Platelet glycoprotein I 94.3 0.069 2.3E-06 48.4 6.3 32 567-598 32-65 (130)
304 1nks_A Adenylate kinase; therm 94.2 0.027 9.2E-07 55.2 3.9 26 162-187 2-27 (194)
305 2bdt_A BH3686; alpha-beta prot 94.2 0.026 8.8E-07 55.2 3.7 22 162-183 3-24 (189)
306 1zuh_A Shikimate kinase; alpha 94.2 0.029 9.9E-07 53.6 3.9 27 160-186 6-32 (168)
307 1via_A Shikimate kinase; struc 94.2 0.024 8.2E-07 54.6 3.3 25 162-186 5-29 (175)
308 1kht_A Adenylate kinase; phosp 94.2 0.029 9.8E-07 54.9 3.9 26 162-187 4-29 (192)
309 1um8_A ATP-dependent CLP prote 94.2 0.06 2.1E-06 59.2 6.9 25 161-185 72-96 (376)
310 2ffh_A Protein (FFH); SRP54, s 94.2 0.25 8.5E-06 54.5 11.7 56 160-217 97-154 (425)
311 3tau_A Guanylate kinase, GMP k 94.2 0.028 9.7E-07 55.9 3.9 27 160-186 7-33 (208)
312 2wsm_A Hydrogenase expression/ 94.1 0.035 1.2E-06 55.7 4.6 42 146-187 15-56 (221)
313 2r6a_A DNAB helicase, replicat 94.1 1.9 6.4E-05 48.4 19.3 89 117-212 163-252 (454)
314 4gp7_A Metallophosphoesterase; 94.1 0.022 7.5E-07 54.7 2.8 23 160-182 8-30 (171)
315 1lvg_A Guanylate kinase, GMP k 94.1 0.025 8.6E-07 55.8 3.3 26 161-186 4-29 (198)
316 1pgv_A TMD-1, tropomodulin TMD 94.1 0.032 1.1E-06 54.3 3.8 34 588-621 98-136 (197)
317 1xjc_A MOBB protein homolog; s 94.0 0.038 1.3E-06 52.4 4.2 28 160-187 3-30 (169)
318 3asz_A Uridine kinase; cytidin 94.0 0.033 1.1E-06 55.6 4.1 27 160-186 5-31 (211)
319 3hws_A ATP-dependent CLP prote 94.0 0.047 1.6E-06 59.7 5.7 45 141-185 16-75 (363)
320 2bbw_A Adenylate kinase 4, AK4 94.0 0.032 1.1E-06 57.2 4.1 27 160-186 26-52 (246)
321 3oaa_A ATP synthase subunit al 94.0 0.092 3.2E-06 58.1 7.7 92 159-252 160-266 (513)
322 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 54.5 3.9 26 161-186 5-30 (193)
323 1htw_A HI0065; nucleotide-bind 94.0 0.031 1.1E-06 52.6 3.5 27 159-185 31-57 (158)
324 3ney_A 55 kDa erythrocyte memb 93.9 0.033 1.1E-06 54.3 3.7 27 160-186 18-44 (197)
325 3iij_A Coilin-interacting nucl 93.9 0.028 9.6E-07 54.4 3.2 26 161-186 11-36 (180)
326 2jaq_A Deoxyguanosine kinase; 93.9 0.032 1.1E-06 55.2 3.8 24 163-186 2-25 (205)
327 1ex7_A Guanylate kinase; subst 93.9 0.02 6.8E-07 55.5 2.1 25 162-186 2-26 (186)
328 1cke_A CK, MSSA, protein (cyti 93.9 0.033 1.1E-06 56.2 3.9 25 162-186 6-30 (227)
329 3umf_A Adenylate kinase; rossm 93.9 0.04 1.4E-06 54.8 4.2 27 160-186 28-54 (217)
330 2c61_A A-type ATP synthase non 93.9 0.051 1.7E-06 60.1 5.4 93 160-252 151-261 (469)
331 2ck3_A ATP synthase subunit al 93.9 0.11 3.6E-06 58.0 7.9 93 160-252 161-274 (510)
332 2qor_A Guanylate kinase; phosp 93.8 0.03 1E-06 55.5 3.4 27 160-186 11-37 (204)
333 2qe7_A ATP synthase subunit al 93.8 0.086 2.9E-06 58.6 7.2 91 160-252 161-266 (502)
334 1znw_A Guanylate kinase, GMP k 93.8 0.031 1.1E-06 55.6 3.3 27 160-186 19-45 (207)
335 2r9v_A ATP synthase subunit al 93.8 0.056 1.9E-06 60.0 5.6 91 160-252 174-279 (515)
336 1tev_A UMP-CMP kinase; ploop, 93.8 0.04 1.4E-06 54.0 4.1 26 161-186 3-28 (196)
337 2if2_A Dephospho-COA kinase; a 93.8 0.032 1.1E-06 55.3 3.3 22 162-183 2-23 (204)
338 3fwy_A Light-independent proto 93.7 0.045 1.5E-06 58.1 4.6 41 159-200 46-86 (314)
339 1g8p_A Magnesium-chelatase 38 93.7 0.039 1.3E-06 60.0 4.3 50 137-186 21-70 (350)
340 2c95_A Adenylate kinase 1; tra 93.7 0.038 1.3E-06 54.3 3.8 27 160-186 8-34 (196)
341 2iyv_A Shikimate kinase, SK; t 93.7 0.03 1E-06 54.4 3.1 25 162-186 3-27 (184)
342 3cm0_A Adenylate kinase; ATP-b 93.7 0.042 1.4E-06 53.5 4.0 26 161-186 4-29 (186)
343 2j41_A Guanylate kinase; GMP, 93.7 0.035 1.2E-06 55.1 3.5 25 161-185 6-30 (207)
344 2dr3_A UPF0273 protein PH0284; 93.7 0.19 6.6E-06 51.2 9.3 47 161-210 23-69 (247)
345 1y63_A LMAJ004144AAA protein; 93.7 0.039 1.3E-06 53.7 3.7 25 160-184 9-33 (184)
346 1e6c_A Shikimate kinase; phosp 93.6 0.037 1.3E-06 53.1 3.3 25 162-186 3-27 (173)
347 4e22_A Cytidylate kinase; P-lo 93.6 0.039 1.3E-06 56.8 3.7 27 160-186 26-52 (252)
348 2i3b_A HCR-ntpase, human cance 93.6 0.038 1.3E-06 53.9 3.4 25 162-186 2-26 (189)
349 1g41_A Heat shock protein HSLU 93.6 0.058 2E-06 59.7 5.3 46 141-186 16-75 (444)
350 2bwj_A Adenylate kinase 5; pho 93.5 0.041 1.4E-06 54.2 3.7 26 161-186 12-37 (199)
351 3aez_A Pantothenate kinase; tr 93.5 0.049 1.7E-06 57.8 4.4 29 159-187 88-116 (312)
352 2jeo_A Uridine-cytidine kinase 93.5 0.049 1.7E-06 55.8 4.3 28 159-186 23-50 (245)
353 2plr_A DTMP kinase, probable t 93.5 0.047 1.6E-06 54.4 4.1 27 161-187 4-30 (213)
354 1uf9_A TT1252 protein; P-loop, 93.5 0.044 1.5E-06 54.1 3.8 26 159-184 6-31 (203)
355 2j37_W Signal recognition part 93.5 0.52 1.8E-05 53.2 12.9 39 159-198 99-137 (504)
356 1gvn_B Zeta; postsegregational 93.4 0.072 2.5E-06 55.9 5.6 26 160-185 32-57 (287)
357 1z6g_A Guanylate kinase; struc 93.4 0.034 1.2E-06 55.7 2.9 26 160-185 22-47 (218)
358 1ukz_A Uridylate kinase; trans 93.4 0.046 1.6E-06 54.1 3.9 27 159-185 13-39 (203)
359 1rj9_A FTSY, signal recognitio 93.4 0.05 1.7E-06 57.5 4.2 28 160-187 101-128 (304)
360 1pgv_A TMD-1, tropomodulin TMD 93.4 0.063 2.2E-06 52.2 4.5 16 607-622 94-109 (197)
361 3vr4_A V-type sodium ATPase ca 93.4 0.11 3.7E-06 58.5 6.9 89 159-251 230-340 (600)
362 1s96_A Guanylate kinase, GMP k 93.4 0.047 1.6E-06 54.6 3.7 27 160-186 15-41 (219)
363 2pt5_A Shikimate kinase, SK; a 93.3 0.052 1.8E-06 51.8 3.9 24 163-186 2-25 (168)
364 3rfe_A Platelet glycoprotein I 93.3 0.13 4.3E-06 46.6 6.2 35 520-554 32-66 (130)
365 1fx0_A ATP synthase alpha chai 93.3 0.063 2.1E-06 59.7 4.9 90 161-252 163-267 (507)
366 1jjv_A Dephospho-COA kinase; P 93.3 0.045 1.5E-06 54.3 3.5 22 162-183 3-24 (206)
367 4a1f_A DNAB helicase, replicat 93.3 1.1 3.8E-05 47.6 14.5 89 118-214 6-96 (338)
368 1ls1_A Signal recognition part 93.2 0.45 1.5E-05 49.9 11.3 28 160-187 97-124 (295)
369 2vli_A Antibiotic resistance p 93.2 0.036 1.2E-06 53.8 2.6 26 161-186 5-30 (183)
370 3bh0_A DNAB-like replicative h 93.2 0.41 1.4E-05 50.9 11.1 51 160-214 67-118 (315)
371 2cdn_A Adenylate kinase; phosp 93.2 0.053 1.8E-06 53.6 3.9 26 161-186 20-45 (201)
372 2e87_A Hypothetical protein PH 93.2 0.63 2.1E-05 50.5 12.8 25 160-184 166-190 (357)
373 2onk_A Molybdate/tungstate ABC 93.2 0.048 1.6E-06 55.4 3.6 26 159-185 23-48 (240)
374 1qf9_A UMP/CMP kinase, protein 93.2 0.051 1.8E-06 53.1 3.7 26 161-186 6-31 (194)
375 2z0h_A DTMP kinase, thymidylat 93.1 0.13 4.4E-06 50.4 6.6 25 163-187 2-26 (197)
376 3b9q_A Chloroplast SRP recepto 93.1 0.062 2.1E-06 56.7 4.4 42 160-203 99-140 (302)
377 3tqc_A Pantothenate kinase; bi 93.1 0.08 2.7E-06 56.1 5.2 28 160-187 91-118 (321)
378 2qt1_A Nicotinamide riboside k 93.1 0.052 1.8E-06 53.9 3.6 26 160-185 20-45 (207)
379 2pbr_A DTMP kinase, thymidylat 93.1 0.056 1.9E-06 52.9 3.8 25 163-187 2-26 (195)
380 2pez_A Bifunctional 3'-phospho 93.1 0.11 3.7E-06 50.1 5.8 27 161-187 5-31 (179)
381 2grj_A Dephospho-COA kinase; T 93.1 0.059 2E-06 52.6 3.8 25 161-185 12-36 (192)
382 3cmu_A Protein RECA, recombina 93.0 0.19 6.6E-06 65.5 9.4 84 160-250 1426-1515(2050)
383 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.06 2.1E-06 55.7 4.1 26 161-186 4-29 (260)
384 1aky_A Adenylate kinase; ATP:A 93.0 0.062 2.1E-06 53.9 4.1 26 161-186 4-29 (220)
385 1nn5_A Similar to deoxythymidy 92.9 0.06 2.1E-06 53.7 3.9 27 161-187 9-35 (215)
386 2wwf_A Thymidilate kinase, put 92.9 0.06 2.1E-06 53.6 3.8 27 161-187 10-36 (212)
387 3fb4_A Adenylate kinase; psych 92.9 0.06 2.1E-06 53.8 3.8 24 163-186 2-25 (216)
388 3b85_A Phosphate starvation-in 92.9 0.046 1.6E-06 54.2 2.8 24 161-184 22-45 (208)
389 1uj2_A Uridine-cytidine kinase 92.8 0.064 2.2E-06 55.2 4.0 28 159-186 20-47 (252)
390 3tlx_A Adenylate kinase 2; str 92.8 0.11 3.7E-06 53.0 5.7 26 160-185 28-53 (243)
391 2q6t_A DNAB replication FORK h 92.8 0.5 1.7E-05 53.0 11.6 53 160-214 199-251 (444)
392 3tif_A Uncharacterized ABC tra 92.8 0.047 1.6E-06 55.4 2.8 26 160-185 30-55 (235)
393 2b8t_A Thymidine kinase; deoxy 92.8 0.037 1.3E-06 55.3 1.9 111 160-278 11-126 (223)
394 2p5t_B PEZT; postsegregational 92.8 0.081 2.8E-06 54.4 4.7 27 160-186 31-57 (253)
395 2pcj_A ABC transporter, lipopr 92.7 0.046 1.6E-06 55.0 2.7 25 161-185 30-54 (224)
396 3r20_A Cytidylate kinase; stru 92.6 0.071 2.4E-06 53.6 3.9 26 161-186 9-34 (233)
397 1gtv_A TMK, thymidylate kinase 92.6 0.035 1.2E-06 55.4 1.6 26 162-187 1-26 (214)
398 3d3q_A TRNA delta(2)-isopenten 92.6 0.066 2.3E-06 56.9 3.8 25 162-186 8-32 (340)
399 3gmt_A Adenylate kinase; ssgci 92.6 0.31 1E-05 48.6 8.4 25 162-186 9-33 (230)
400 1g5t_A COB(I)alamin adenosyltr 92.6 0.35 1.2E-05 46.7 8.5 111 162-278 29-163 (196)
401 3mfy_A V-type ATP synthase alp 92.6 0.14 4.9E-06 57.2 6.5 89 160-252 226-336 (588)
402 2f1r_A Molybdopterin-guanine d 92.6 0.042 1.4E-06 52.5 2.0 26 162-187 3-28 (171)
403 2og2_A Putative signal recogni 92.6 0.08 2.7E-06 57.1 4.4 28 160-187 156-183 (359)
404 3nwj_A ATSK2; P loop, shikimat 92.6 0.061 2.1E-06 54.9 3.3 26 161-186 48-73 (250)
405 1zd8_A GTP:AMP phosphotransfer 92.6 0.06 2.1E-06 54.4 3.3 25 161-185 7-31 (227)
406 2zts_A Putative uncharacterize 92.6 0.34 1.2E-05 49.4 9.2 49 161-211 30-78 (251)
407 3dl0_A Adenylate kinase; phosp 92.6 0.064 2.2E-06 53.7 3.4 23 163-185 2-24 (216)
408 3lnc_A Guanylate kinase, GMP k 92.5 0.043 1.5E-06 55.6 2.2 25 161-185 27-52 (231)
409 1np6_A Molybdopterin-guanine d 92.5 0.083 2.8E-06 50.5 4.0 27 161-187 6-32 (174)
410 3v9p_A DTMP kinase, thymidylat 92.5 0.31 1E-05 48.8 8.3 28 161-188 25-52 (227)
411 4eaq_A DTMP kinase, thymidylat 92.5 0.12 4.2E-06 52.1 5.4 28 160-187 25-52 (229)
412 1m7g_A Adenylylsulfate kinase; 92.5 0.08 2.7E-06 52.7 4.0 28 159-186 23-50 (211)
413 1zak_A Adenylate kinase; ATP:A 92.5 0.065 2.2E-06 53.9 3.4 26 161-186 5-30 (222)
414 3gfo_A Cobalt import ATP-bindi 92.4 0.056 1.9E-06 56.1 2.9 26 160-185 33-58 (275)
415 1b0u_A Histidine permease; ABC 92.4 0.057 1.9E-06 55.7 2.9 26 160-185 31-56 (262)
416 2cbz_A Multidrug resistance-as 92.4 0.057 2E-06 54.8 2.8 26 160-185 30-55 (237)
417 1sgw_A Putative ABC transporte 92.4 0.05 1.7E-06 54.1 2.3 25 161-185 35-59 (214)
418 2d2e_A SUFC protein; ABC-ATPas 92.3 0.069 2.4E-06 54.7 3.3 24 161-184 29-52 (250)
419 2olj_A Amino acid ABC transpor 92.3 0.06 2.1E-06 55.5 2.9 26 160-185 49-74 (263)
420 4g1u_C Hemin import ATP-bindin 92.3 0.06 2.1E-06 55.6 2.9 27 160-186 36-62 (266)
421 1ji0_A ABC transporter; ATP bi 92.3 0.06 2.1E-06 54.8 2.8 25 161-185 32-56 (240)
422 2zu0_C Probable ATP-dependent 92.2 0.072 2.4E-06 55.2 3.4 25 160-184 45-69 (267)
423 2pze_A Cystic fibrosis transme 92.2 0.063 2.1E-06 54.2 2.9 26 161-186 34-59 (229)
424 3gqb_A V-type ATP synthase alp 92.2 0.11 3.7E-06 58.2 4.9 88 160-251 220-329 (578)
425 3p32_A Probable GTPase RV1496/ 92.2 0.18 6.2E-06 54.7 6.7 39 149-187 65-105 (355)
426 3exa_A TRNA delta(2)-isopenten 92.2 0.076 2.6E-06 55.4 3.5 25 161-185 3-27 (322)
427 3sr0_A Adenylate kinase; phosp 92.2 0.087 3E-06 52.0 3.8 24 163-186 2-25 (206)
428 1g6h_A High-affinity branched- 92.2 0.062 2.1E-06 55.3 2.8 26 160-185 32-57 (257)
429 1sq5_A Pantothenate kinase; P- 92.1 0.091 3.1E-06 55.8 4.2 28 159-186 78-105 (308)
430 3crm_A TRNA delta(2)-isopenten 92.1 0.08 2.8E-06 55.9 3.6 24 162-185 6-29 (323)
431 3ake_A Cytidylate kinase; CMP 92.1 0.09 3.1E-06 52.1 3.9 24 163-186 4-27 (208)
432 1vpl_A ABC transporter, ATP-bi 92.1 0.067 2.3E-06 54.9 2.9 26 160-185 40-65 (256)
433 1mv5_A LMRA, multidrug resista 92.0 0.07 2.4E-06 54.4 3.0 25 160-184 27-51 (243)
434 2v54_A DTMP kinase, thymidylat 92.0 0.085 2.9E-06 52.1 3.6 25 161-185 4-28 (204)
435 2ff7_A Alpha-hemolysin translo 92.0 0.068 2.3E-06 54.6 2.8 26 160-185 34-59 (247)
436 2qi9_C Vitamin B12 import ATP- 91.9 0.07 2.4E-06 54.5 2.9 26 161-186 26-51 (249)
437 3k1j_A LON protease, ATP-depen 91.9 0.11 3.7E-06 61.0 4.9 46 139-186 40-85 (604)
438 1cr0_A DNA primase/helicase; R 91.9 0.27 9.1E-06 51.9 7.5 53 159-213 33-85 (296)
439 3foz_A TRNA delta(2)-isopenten 91.9 0.092 3.1E-06 54.7 3.7 26 160-185 9-34 (316)
440 2eyu_A Twitching motility prot 91.9 0.15 5.2E-06 52.5 5.3 109 159-279 23-134 (261)
441 3end_A Light-independent proto 91.8 0.25 8.5E-06 52.4 7.2 45 158-203 38-82 (307)
442 2yhs_A FTSY, cell division pro 91.8 0.11 3.9E-06 57.9 4.5 42 160-203 292-333 (503)
443 3a8t_A Adenylate isopentenyltr 91.8 0.071 2.4E-06 56.4 2.7 25 161-185 40-64 (339)
444 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.6E-06 52.2 3.9 23 161-183 4-26 (218)
445 2ghi_A Transport protein; mult 91.8 0.074 2.5E-06 54.8 2.8 26 160-185 45-70 (260)
446 3bgw_A DNAB-like replicative h 91.8 0.79 2.7E-05 51.1 11.4 52 160-214 196-247 (444)
447 2xb4_A Adenylate kinase; ATP-b 91.7 0.1 3.6E-06 52.4 3.9 23 163-185 2-24 (223)
448 2ihy_A ABC transporter, ATP-bi 91.7 0.076 2.6E-06 55.3 2.9 27 160-186 46-72 (279)
449 1e4v_A Adenylate kinase; trans 91.7 0.097 3.3E-06 52.2 3.6 23 163-185 2-24 (214)
450 2nq2_C Hypothetical ABC transp 91.7 0.076 2.6E-06 54.4 2.8 25 161-185 31-55 (253)
451 1oix_A RAS-related protein RAB 91.7 0.092 3.1E-06 51.3 3.3 25 161-185 29-53 (191)
452 2yz2_A Putative ABC transporte 91.6 0.077 2.6E-06 54.9 2.8 26 160-185 32-57 (266)
453 2ixe_A Antigen peptide transpo 91.6 0.077 2.6E-06 55.0 2.8 26 160-185 44-69 (271)
454 3be4_A Adenylate kinase; malar 91.6 0.1 3.5E-06 52.2 3.6 25 162-186 6-30 (217)
455 1zu4_A FTSY; GTPase, signal re 91.6 0.14 4.7E-06 54.5 4.8 29 159-187 103-131 (320)
456 1ak2_A Adenylate kinase isoenz 91.5 0.11 3.9E-06 52.5 3.9 26 161-186 16-41 (233)
457 1a7j_A Phosphoribulokinase; tr 91.5 0.076 2.6E-06 55.7 2.6 40 160-200 4-43 (290)
458 2f6r_A COA synthase, bifunctio 91.5 0.1 3.5E-06 54.5 3.6 24 160-183 74-97 (281)
459 4edh_A DTMP kinase, thymidylat 91.4 0.69 2.4E-05 45.8 9.4 27 161-187 6-32 (213)
460 2v9p_A Replication protein E1; 91.3 0.11 3.6E-06 54.6 3.4 27 159-185 124-150 (305)
461 3cf2_A TER ATPase, transitiona 91.3 0.4 1.4E-05 57.3 8.7 46 141-186 478-536 (806)
462 2f9l_A RAB11B, member RAS onco 91.2 0.11 3.9E-06 50.9 3.5 24 161-184 5-28 (199)
463 3hjn_A DTMP kinase, thymidylat 91.2 0.75 2.6E-05 44.9 9.4 25 164-188 3-27 (197)
464 2pjz_A Hypothetical protein ST 90.9 0.1 3.5E-06 53.8 2.8 24 161-184 30-53 (263)
465 3sop_A Neuronal-specific septi 90.9 0.12 4.2E-06 53.5 3.4 24 163-186 4-27 (270)
466 2wji_A Ferrous iron transport 90.8 0.13 4.4E-06 48.7 3.3 23 162-184 4-26 (165)
467 2r8r_A Sensor protein; KDPD, P 90.8 0.34 1.2E-05 47.9 6.3 39 163-202 8-46 (228)
468 2dyk_A GTP-binding protein; GT 90.8 0.15 5.2E-06 47.7 3.7 23 162-184 2-24 (161)
469 4hlc_A DTMP kinase, thymidylat 90.7 0.76 2.6E-05 45.2 8.8 31 162-194 3-33 (205)
470 1q3t_A Cytidylate kinase; nucl 90.7 0.17 5.7E-06 51.4 4.2 27 160-186 15-41 (236)
471 1yrb_A ATP(GTP)binding protein 90.6 0.17 5.7E-06 52.3 4.2 36 160-197 13-48 (262)
472 4akg_A Glutathione S-transfera 90.6 0.56 1.9E-05 63.5 10.1 143 162-326 1268-1452(2695)
473 3cmw_A Protein RECA, recombina 90.6 0.48 1.7E-05 61.1 9.0 86 160-252 731-822 (1706)
474 3eph_A TRNA isopentenyltransfe 90.5 0.15 5.1E-06 55.3 3.7 25 162-186 3-27 (409)
475 4tmk_A Protein (thymidylate ki 90.5 0.98 3.4E-05 44.6 9.5 27 162-188 4-30 (213)
476 3kta_A Chromosome segregation 90.4 0.14 4.7E-06 49.5 3.2 24 162-185 27-50 (182)
477 2bbs_A Cystic fibrosis transme 90.4 0.11 3.9E-06 54.3 2.6 26 160-185 63-88 (290)
478 3tui_C Methionine import ATP-b 90.3 0.14 4.9E-06 55.0 3.4 25 160-184 53-77 (366)
479 2qmh_A HPR kinase/phosphorylas 90.2 0.13 4.5E-06 49.7 2.7 26 161-186 34-59 (205)
480 3nh6_A ATP-binding cassette SU 90.2 0.095 3.3E-06 55.2 1.9 25 160-184 79-103 (306)
481 1ltq_A Polynucleotide kinase; 90.2 0.17 5.8E-06 53.5 3.9 23 162-184 3-25 (301)
482 2zej_A Dardarin, leucine-rich 90.2 0.13 4.3E-06 49.9 2.6 21 163-183 4-24 (184)
483 1nlf_A Regulatory protein REPA 90.1 0.14 4.7E-06 53.6 3.1 26 161-186 30-55 (279)
484 3fvq_A Fe(3+) IONS import ATP- 90.0 0.14 4.9E-06 54.9 3.1 26 160-185 29-54 (359)
485 3io3_A DEHA2D07832P; chaperone 89.9 0.4 1.4E-05 51.5 6.5 48 156-203 13-61 (348)
486 3cmu_A Protein RECA, recombina 89.9 0.64 2.2E-05 60.8 9.4 86 160-252 382-473 (2050)
487 3cmw_A Protein RECA, recombina 89.8 0.63 2.2E-05 60.0 9.2 83 161-251 1431-1520(1706)
488 1z47_A CYSA, putative ABC-tran 89.8 0.16 5.6E-06 54.5 3.3 26 160-185 40-65 (355)
489 1svm_A Large T antigen; AAA+ f 89.8 0.17 5.9E-06 54.9 3.5 27 159-185 167-193 (377)
490 1q57_A DNA primase/helicase; d 89.6 0.68 2.3E-05 52.9 8.6 57 160-218 241-298 (503)
491 2wjg_A FEOB, ferrous iron tran 89.5 0.19 6.4E-06 48.7 3.3 23 162-184 8-30 (188)
492 2v3c_C SRP54, signal recogniti 89.5 0.16 5.5E-06 56.4 3.1 28 160-187 98-125 (432)
493 3jvv_A Twitching mobility prot 89.5 0.27 9.3E-06 53.0 4.8 111 159-280 121-233 (356)
494 2yyz_A Sugar ABC transporter, 89.5 0.18 6.1E-06 54.3 3.3 26 160-185 28-53 (359)
495 2qtf_A Protein HFLX, GTP-bindi 89.4 0.4 1.4E-05 52.0 6.1 26 159-184 177-202 (364)
496 2it1_A 362AA long hypothetical 89.4 0.18 6.3E-06 54.3 3.4 26 160-185 28-53 (362)
497 3rlf_A Maltose/maltodextrin im 89.4 0.18 6.3E-06 54.5 3.4 26 160-185 28-53 (381)
498 1cp2_A CP2, nitrogenase iron p 89.4 0.24 8.3E-06 51.3 4.2 39 162-201 2-40 (269)
499 3zvl_A Bifunctional polynucleo 89.3 0.15 5.3E-06 56.5 2.8 26 160-185 257-282 (416)
500 4gzl_A RAS-related C3 botulinu 89.2 0.21 7.2E-06 49.2 3.5 36 149-184 18-53 (204)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.1e-44 Score=422.65 Aligned_cols=305 Identities=14% Similarity=0.145 Sum_probs=245.6
Q ss_pred cccHHHHHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHH--HHhhhCCCce-EEEEEccCC--CHHHHHHHHHHH
Q 038902 143 THSSKALNSIMKLLKDD---KVNIIGLQGPGGIGKSTLMEQLAK--QIDTIAPHDK-AHVIVAESS--DLRRIQDKIAEL 214 (997)
Q Consensus 143 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~-~wv~v~~~~--~~~~~~~~i~~~ 214 (997)
+||+.++++|.++|..+ ..++|+|+|||||||||||+++|+ +.+...+|+. +||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999643 689999999999999999999998 4566678999 999999885 899999999999
Q ss_pred hCCCCc--------hhhHHHHHHHHHHHHHhcCC-cEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcCC
Q 038902 215 LKFKIE--------EEDELQRRATLAKRLRERTK-KVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKMS 285 (997)
Q Consensus 215 l~~~~~--------~~~~~~~~~~l~~~l~~~~k-~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~ 285 (997)
++.... ..+.......++++|.+ + |+||||||||+.+++ .+ + ..+||+||||||++.++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALID--RPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT--STTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcC--CCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcC
Confidence 976421 22345567888888886 6 999999999998764 11 1 127999999999999999886
Q ss_pred -C-eeEEcCCCCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHH
Q 038902 286 -D-VTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEE 362 (997)
Q Consensus 286 -~-~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~ 362 (997)
. .+|++++|++++||+||.++++..+ ++.+.+++.+|+++|+|+||||+++|+.++.+ . .+|...+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~--------w~~~~~l~~ 353 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T--------FEKMAQLNN 353 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S--------HHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h--------HHHHHHhHH
Confidence 3 7899999999999999999998554 37788899999999999999999999998765 2 233333333
Q ss_pred HHHhccccccccCcccccceeeeecccchhhhhHHHh-----------hhccCCCCCccchhhHHHHhhcc--ccccccc
Q 038902 363 VIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQ-----------FCCLFPAYRSVPIEDFVMHGLVD--RLFRDVD 429 (997)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~ 429 (997)
-+... ....+..++.+||+.||+++|.||+ |||+||+++.|+ ++.|+|+ ||+....
T Consensus 354 ~l~~~-------~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 354 KLESR-------GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNE 422 (549)
T ss_dssp HHHHH-------CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC------
T ss_pred Hhhcc-------cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCC
Confidence 11111 1356899999999999999999999 999999999999 8899999 9997532
Q ss_pred ---cHHHHHHHHHHHHHHHHhcccccccc--CCCeEEecchhHHHHHHhhcccCc
Q 038902 430 ---SMGGVLNKMQSIVEDLRNRKILSYRE--GEGTYRIHDNTRIVVKYFATKEGN 479 (997)
Q Consensus 430 ---~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~mHdli~~~~~~~~~~~~~ 479 (997)
+.+++++ +|++|+++||++... ...+|+|||++|++|+.++..+++
T Consensus 423 ~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 423 EEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 3344333 899999999998754 345799999999999999887754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-37 Score=366.71 Aligned_cols=285 Identities=15% Similarity=0.149 Sum_probs=227.1
Q ss_pred cccccHHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHHHHHHHhCC
Q 038902 141 DLTHSSKALNSIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
..+||+.++++|.++|.. ++.++|+|+||||+||||||+++|++.+...+|+. +|+++++.++...++..|+..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 359999999999999975 56899999999999999999999987655557875 999999999998888888775421
Q ss_pred C-------Cc-----hhhHHHHHHHHHHHHHh-cCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcC
Q 038902 218 K-------IE-----EEDELQRRATLAKRLRE-RTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKM 284 (997)
Q Consensus 218 ~-------~~-----~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 284 (997)
. .+ ..+.......+++.|.. .++|+||||||||+.+.|+.+ .+||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhc
Confidence 1 00 11234456667777632 469999999999998888765 2689999999999988654
Q ss_pred CC-eeEEcC------CCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhH
Q 038902 285 SD-VTVQIE------ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWN 357 (997)
Q Consensus 285 ~~-~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~ 357 (997)
.. ..|.++ +|+.+|||+||++..+.. ..++..+| |+|+||||+++|+.|+++..+ .++|+
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s------~eeW~ 348 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQDLPREV---LTTNPRRLSIIAESIRDGLAT------WDNWK 348 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS------HHHHH
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC------HHHHh
Confidence 43 456666 999999999999986432 22333443 999999999999999977431 37776
Q ss_pred HHHHHHHHhccccccccCcccccceeeeecccchhhh-hHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHH
Q 038902 358 DAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVA-KGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLN 436 (997)
Q Consensus 358 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 436 (997)
.. ....+..+|.+||+.||+++ |.||+|||+||+++.|+.+.++.+|.++|. +
T Consensus 349 ~~---------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e---- 402 (1221)
T 1vt4_I 349 HV---------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S---- 402 (1221)
T ss_dssp HC---------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----
T ss_pred cC---------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----
Confidence 42 12567888999999999999 999999999999999999999999999871 1
Q ss_pred HHHHHHHHHHhccccccccCCCeEEecchhHHHHH
Q 038902 437 KMQSIVEDLRNRKILSYREGEGTYRIHDNTRIVVK 471 (997)
Q Consensus 437 ~~~~~l~~L~~~~ll~~~~~~~~~~mHdli~~~~~ 471 (997)
.+..+|++|+++||++..+...+|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 24458999999999988655678999999998653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-35 Score=387.41 Aligned_cols=307 Identities=17% Similarity=0.239 Sum_probs=246.6
Q ss_pred cccccHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh-hCCCc-e-EEEEEccCCC--HHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK--DDKVNIIGLQGPGGIGKSTLMEQLAKQIDT-IAPHD-K-AHVIVAESSD--LRRIQDKIAE 213 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~f~-~-~wv~v~~~~~--~~~~~~~i~~ 213 (997)
.|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+|. . +|+++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 79999999999999995 457899999999999999999999988643 33455 4 7999988643 3444667777
Q ss_pred HhCCCC-----chhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcC-CC-
Q 038902 214 LLKFKI-----EEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKM-SD- 286 (997)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~-~~- 286 (997)
.++... ...+.......++..+..+++|+||||||||+..+|..+ .+||+||||||++.++..+ ..
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCB
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCc
Confidence 776432 123456677778888876345999999999998877654 5789999999999998653 34
Q ss_pred eeEEcCC-CCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHHHHHH
Q 038902 287 VTVQIEE-LGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVEEVIR 365 (997)
Q Consensus 287 ~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~~~l~ 365 (997)
..+++++ |++++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+.. .|+..++. +.
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---------~~~~~l~~-l~ 346 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMK-KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---------RWAYYLRQ-LQ 346 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSC-STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---------CHHHHHHH-HH
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCC-hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---------HHHHHHHH-Hh
Confidence 8899996 99999999999988633 3455678999999999999999999999987654 58888888 77
Q ss_pred hccccccccC----cccccceeeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHHHHHH
Q 038902 366 ESRDIKIEEI----PKEEFLGITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSI 441 (997)
Q Consensus 366 ~~~~~~~~~~----~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 441 (997)
......+... .+.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.+++ +.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHH
Confidence 6543332221 145889999999999999999999999999999999999999997662 223458
Q ss_pred HHHHHhccccccccCCC--eEEecchhHHHHHHhhccc
Q 038902 442 VEDLRNRKILSYREGEG--TYRIHDNTRIVVKYFATKE 477 (997)
Q Consensus 442 l~~L~~~~ll~~~~~~~--~~~mHdli~~~~~~~~~~~ 477 (997)
+++|+++||++.....+ +|+||+++|++++..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999998654333 5999999999999987666
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=333.46 Aligned_cols=306 Identities=17% Similarity=0.229 Sum_probs=236.9
Q ss_pred ccccccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhh-hCCCc-e-EEEEEccCCCHHHHHHHH-
Q 038902 138 SVSDLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDT-IAPHD-K-AHVIVAESSDLRRIQDKI- 211 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~f~-~-~wv~v~~~~~~~~~~~~i- 211 (997)
....||||+.++++|.+++.. ++.++|+|+||||+||||||++++++.+. ..+|. . +|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 344799999999999999963 46899999999999999999999987643 44684 5 99999876 344444444
Q ss_pred --HHHhCCC-----CchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhhhhcC
Q 038902 212 --AELLKFK-----IEEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDVCSKM 284 (997)
Q Consensus 212 --~~~l~~~-----~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 284 (997)
+..++.. ....+.......+.+.+.+..+++||||||||+...+..+ .+|++||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 4455421 1223455667778888877457999999999987665533 5689999999999988765
Q ss_pred CCeeEEc---CCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHcCCCcccchhhhhhhhHHHHH
Q 038902 285 SDVTVQI---EELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALRGKLANESNESLVNIWNDAVE 361 (997)
Q Consensus 285 ~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~~~~~~~~w~~~l~ 361 (997)
....+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||+.+|+.++... ..|+..+.
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---------~~w~~~l~ 343 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP---------NRWEYYLK 343 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---------TCHHHHHH
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc---------hhHHHHHH
Confidence 5534444 5899999999999998742 233456789999999999999999999998753 46998888
Q ss_pred HHHHhcccccccc----CcccccceeeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhccccccccccHHHHHHH
Q 038902 362 EVIRESRDIKIEE----IPKEEFLGITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVDRLFRDVDSMGGVLNK 437 (997)
Q Consensus 362 ~~l~~~~~~~~~~----~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 437 (997)
. +.......+.. ....+..++..||+.||++.|.||.+||+||+++.|+.+.+...|.+++ ++
T Consensus 344 ~-l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~---- 410 (591)
T 1z6t_A 344 Q-LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE---- 410 (591)
T ss_dssp H-HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----
T ss_pred H-HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----
Confidence 8 77644322211 1246788899999999999999999999999999999999999996541 22
Q ss_pred HHHHHHHHHhcccccccc--CCCeEEecchhHHHHHHhh
Q 038902 438 MQSIVEDLRNRKILSYRE--GEGTYRIHDNTRIVVKYFA 474 (997)
Q Consensus 438 ~~~~l~~L~~~~ll~~~~--~~~~~~mHdli~~~~~~~~ 474 (997)
+..++++|+++||++... ....|+||+++|++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 345799999999997543 2347999999999998874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-31 Score=322.61 Aligned_cols=458 Identities=17% Similarity=0.095 Sum_probs=282.2
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-Cccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~ 566 (997)
.+|.....++++|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..+++++
T Consensus 25 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 25 KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred cCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 56666678999999999998888763 3899999999999999999888899999999999999999977 78899999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCccc--ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCC----
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIR--ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQL---- 638 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L---- 638 (997)
+|++|++++|.++.++ .++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+.+|
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcccccc
Confidence 9999999999998876 8999999999999999987 478999999999999999997 444443334444433
Q ss_pred cEEEeecCCCCcccccCC------------C--CCCCChHhhhCCCCCCEEEEEecc-----------------------
Q 038902 639 EELYIGNSFGNWELEETP------------N--PKSAAFKEVASLSRLTVLYIHINS----------------------- 681 (997)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~------------~--~~~~~~~~l~~l~~L~~L~l~~~~----------------------- 681 (997)
.+|+++++....-..... + ........++.+++|+.+++..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 366665542110000000 0 000111223334444433332211
Q ss_pred ----------ccccccccCCCCCCccEEEEEecCccc-----cccccceEEeecCc-ccchHHHHHhhccccceecCCCC
Q 038902 682 ----------TEVLSKQFDGPWGNLKRFRVQVNDDYW-----EIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSR 745 (997)
Q Consensus 682 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~ 745 (997)
.....+. +..+++|+.|++.++.... .+++|+.|.++++. +.+|.+ .+++|+.|++.++.
T Consensus 264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~---~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC---CCSSCCEEEEESCS
T ss_pred hheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC---CCCccceeeccCCc
Confidence 1111111 3345777777777766521 45677788887777 666643 46788888886665
Q ss_pred CCcccccccccCCCCccEEEEeccCCcccc-chhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecC
Q 038902 746 DLEDIGAIEVQGLTALMTMHLRACSLQRIF-RSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILE 824 (997)
Q Consensus 746 ~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 824 (997)
.+..+ .+..+++|++|++++|.++... ....+..+++|++|++++|. +..++ .....+++|+.|+++
T Consensus 340 ~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--------~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 340 GSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--------ANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--------CCCTTCTTCCEEECT
T ss_pred Cccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch--------hhccCCCCCCeeECC
Confidence 44433 3556778888888888766542 12345667888888888775 33332 244567777777777
Q ss_pred CccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhh-hcCCCCCCc------ccc
Q 038902 825 GLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEI-VSSDEPEEK------PEA 897 (997)
Q Consensus 825 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~------~~~ 897 (997)
++. +..... ...+..+++|++|++++|. ++.. .+..+..+++|++|++++|.-...+ +........ ...
T Consensus 408 ~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 408 HST-LKRVTE-FSAFLSLEKLLYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp TSE-EESTTT-TTTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCc-cCCccC-hhhhhccccCCEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 754 222111 0123466777777777764 3332 2344566777777777776432211 111000000 000
Q ss_pred cccCCC--CCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccc-ccccee
Q 038902 898 AVSNIP--PPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILI-QLENLI 974 (997)
Q Consensus 898 ~l~~l~--~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~-~L~~L~ 974 (997)
.+..+. ....+++|++|++++|+ ++.+ .+..+.++++|++|++++|. ++.+ |..+..++ +|++|+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~---------p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNN-LLFL-DSSHYNQLYSLSTLDCSFNR-IETS---------KGILQHFPKSLAFFN 551 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CSCE-EGGGTTTCTTCCEEECTTSC-CCCE---------ESCGGGSCTTCCEEE
T ss_pred cCCccChhhhcccccCCEEECCCCc-CCCc-CHHHccCCCcCCEEECCCCc-Cccc---------CHhHhhhcccCcEEE
Confidence 011110 02335566666666653 3332 23344556666666665553 4444 33455555 466666
Q ss_pred cccccc
Q 038902 975 LEDLTE 980 (997)
Q Consensus 975 l~~cp~ 980 (997)
++++|-
T Consensus 552 l~~N~~ 557 (606)
T 3vq2_A 552 LTNNSV 557 (606)
T ss_dssp CCSCCC
T ss_pred ccCCCc
Confidence 666543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.7e-31 Score=316.08 Aligned_cols=465 Identities=14% Similarity=0.081 Sum_probs=295.8
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-Cccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~ 566 (997)
.+|......+++|++++|.+..++.. ..+++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |..++.++
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 56666678899999999999888543 3899999999999999999888899999999999999999865 77899999
Q ss_pred cCCEEEcCCCCccCC-C-cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCc--EE
Q 038902 567 KLRSLRAENTHLEKA-P-LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLE--EL 641 (997)
Q Consensus 567 ~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L 641 (997)
+|++|++++|.++.+ | .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+++|+ +|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEE
Confidence 999999999999997 3 8999999999999999998763 444559999999999998 5666666689999999 78
Q ss_pred EeecCCCCcccccCC------------------------------------------CCCCCChHhhhCCCCCCEEEEEe
Q 038902 642 YIGNSFGNWELEETP------------------------------------------NPKSAAFKEVASLSRLTVLYIHI 679 (997)
Q Consensus 642 ~l~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~ 679 (997)
+++++.......... ......+..+..+ +|+.|++++
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~l~~ 263 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQK 263 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEECTT
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEEeec
Confidence 887653211110000 0000011111111 567777777
Q ss_pred ccccccccccCCCCCCccEEEEEecCcc------ccccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCccccc
Q 038902 680 NSTEVLSKQFDGPWGNLKRFRVQVNDDY------WEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGA 752 (997)
Q Consensus 680 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 752 (997)
|.+..++...+..+++|+.|++++|... ..+++|+.|+++++. ..++......+++|+.|++.++.....++.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 7777777766677778888888777652 155677888887776 443332223467788888866554445555
Q ss_pred ccccCCCCccEEEEeccCCccccc-hhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcce
Q 038902 753 IEVQGLTALMTMHLRACSLQRIFR-SSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLT 831 (997)
Q Consensus 753 ~~~~~l~~L~~L~L~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 831 (997)
..+..+++|++|++++|.+..... ...+..+++|++|++++|......+ .....+++|+.|+++++. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-l~~ 414 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--------EAFKECPQLELLDLAFTR-LKV 414 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--------TTTTTCTTCSEEECTTCC-EEC
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--------HHhcCCccCCeEECCCCc-CCC
Confidence 556777778888888777665531 2235567778888887765322211 234566777777777654 222
Q ss_pred ecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCc---------ccccccCC
Q 038902 832 IWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEK---------PEAAVSNI 902 (997)
Q Consensus 832 ~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~---------~~~~l~~l 902 (997)
.. ....+..+++|+.|++++|. ++.. .+..+..+++|++|++++|.--............ ....+..+
T Consensus 415 ~~-~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 415 KD-AQSPFQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CT-TCCTTTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred cc-cchhhhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 11 01123466777777777753 3333 2344556677777777766422110000000000 00000001
Q ss_pred C--CCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 903 P--PPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 903 ~--~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
. ....+++|++|++++|. ++.. ++..+.++++| +|++++| +++.+ .|..+..+++|++|+++++|-
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~l~~l~~L-~L~L~~N-~l~~~--------~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNR-LTSS-SIEALSHLKGI-YLNLASN-HISII--------LPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCGG-GGGGGTTCCSC-EEECCSS-CCCCC--------CGGGHHHHHTSSEEECTTCCE
T ss_pred ChhhhccccCCCEEECCCCc-cCcC-ChhHhCccccc-EEECcCC-ccccc--------CHhhcccCCCCCEEeCCCCCc
Confidence 0 11334556666666553 3332 23344555555 5665554 23332 244566778888888887764
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2.6e-30 Score=315.84 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=129.0
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 566 (997)
.+|.....++++|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|. .++.++
T Consensus 18 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 18 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp SCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 45655567899999999988888864 378999999999999998888889999999999999999998876 589999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhh--cCCCCcEE
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIIS--KLCQLEEL 641 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L 641 (997)
+|++|++++|.++.++ .++++++|++|++++|.+... |..+.++++|++|++++|. +..++...++ .+++|++|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEE
Confidence 9999999999998876 688999999999999988765 4567889999999999887 5556554343 45778888
Q ss_pred EeecC
Q 038902 642 YIGNS 646 (997)
Q Consensus 642 ~l~~~ 646 (997)
+++++
T Consensus 177 ~L~~n 181 (680)
T 1ziw_A 177 ELSSN 181 (680)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 88665
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.3e-31 Score=322.94 Aligned_cols=357 Identities=18% Similarity=0.139 Sum_probs=230.7
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccC-CCCccccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~ 574 (997)
..++++|++++|.+........+++|++|++++|.+....+. +.++++|++|++++|.++ .+|..++.+++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 356777777776665554445777788888877777665554 677778888888877776 556777777888888888
Q ss_pred CCCccCC-CcccccCcccEEEecCCccc-ccCccccCC-CCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcc
Q 038902 575 NTHLEKA-PLKKEFKELVILILRGSSIR-ELPKGLERW-INLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWE 651 (997)
Q Consensus 575 ~~~l~~l-p~~~~l~~L~~L~L~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 651 (997)
+|.++.. |.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|...+.+|.. ++.+++|++|++++|..
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l--- 330 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNF--- 330 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEE---
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcc---
Confidence 7776643 333 7777788888777776 567666654 77888888877755566665 67778888887766521
Q ss_pred cccCCCCCCCChH-hhhCCCCCCEEEEEeccccccccccCCCCC-CccEEEEEecCcc-----c----cccccceEEeec
Q 038902 652 LEETPNPKSAAFK-EVASLSRLTVLYIHINSTEVLSKQFDGPWG-NLKRFRVQVNDDY-----W----EIASTRSMHLKN 720 (997)
Q Consensus 652 ~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-----~----~~~~L~~L~l~~ 720 (997)
...... .+..+++|+.|++++|.+....+..+..++ +|+.|++++|... + .+++|+.|.+++
T Consensus 331 -------~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 331 -------SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp -------EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred -------cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 112222 367777788888877765532222223333 7777777776541 1 156677777777
Q ss_pred Cc--ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccc
Q 038902 721 IS--TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMK 798 (997)
Q Consensus 721 ~~--~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 798 (997)
+. +.+|.++.. +++|+.|+|+++. +.......|..+++|+.|++++|.+.+..|. .+..+++|+.|++++|....
T Consensus 404 n~l~~~~p~~l~~-l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 404 NGFTGKIPPTLSN-CSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp SEEEEECCGGGGG-CTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCS
T ss_pred CccccccCHHHhc-CCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCceEEEecCCcccC
Confidence 76 455555543 6777777775543 4433335566777788888877776655444 35567778888877776544
Q ss_pred eeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecC
Q 038902 799 EVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQK 878 (997)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 878 (997)
.++ .....+++|+.|++++|.-...+ +..++.+++|+.|++++|.-...+ +..+..+++|+.|++++
T Consensus 481 ~~p--------~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 481 EIP--------SGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCC--------GGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCS
T ss_pred cCC--------HHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCC
Confidence 443 34566777777777776522222 122346777777777776432233 45566777777777777
Q ss_pred Ccc
Q 038902 879 CDR 881 (997)
Q Consensus 879 c~~ 881 (997)
|+-
T Consensus 548 N~l 550 (768)
T 3rgz_A 548 NLF 550 (768)
T ss_dssp SEE
T ss_pred Ccc
Confidence 653
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=309.81 Aligned_cols=443 Identities=19% Similarity=0.153 Sum_probs=308.1
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~ 566 (997)
.+|.....++++|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.+| ..++.++
T Consensus 21 ~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 55655567899999999998887653 38999999999999999998888999999999999999998775 6789999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCcccc--cCccccCCCCCcEEeccCCccCCCCChHHhhcCCCC----
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRE--LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQL---- 638 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L---- 638 (997)
+|++|++++|.++.++ .++++++|++|++++|.+.. +|..+.++++|++|++++|. +..++...++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhh
Confidence 9999999999999987 69999999999999999885 68999999999999999997 555555446777777
Q ss_pred cEEEeecCCCCcccccCC--------------CCCCCChHhhhCCCCCCE------------------------------
Q 038902 639 EELYIGNSFGNWELEETP--------------NPKSAAFKEVASLSRLTV------------------------------ 674 (997)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~--------------~~~~~~~~~l~~l~~L~~------------------------------ 674 (997)
.+|+++++.......... .........+..+++++.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 778876653211100000 000000111222222222
Q ss_pred --EEEEec-cccccccccCCCCCCccEEEEEecCcc----c--cccccceEEeecCc-ccchHHHHHhhccccceecCCC
Q 038902 675 --LYIHIN-STEVLSKQFDGPWGNLKRFRVQVNDDY----W--EIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRS 744 (997)
Q Consensus 675 --L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~--~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~ 744 (997)
+++..+ ......+..+..+++|+.|++.+|... + .. +|+.|+++++. ..+|.+ .+++|+.|++.++
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~---~l~~L~~L~l~~n 335 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC---BCSSCCEEEEESC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc---cccccCEEeCcCC
Confidence 222222 112222233445677777777776541 1 33 67777777776 555542 3678888888665
Q ss_pred CCCcccccccccCCCCccEEEEeccCCccccc-hhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeec
Q 038902 745 RDLEDIGAIEVQGLTALMTMHLRACSLQRIFR-SSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELIL 823 (997)
Q Consensus 745 ~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 823 (997)
......+. ..+++|++|++++|.+..... ...+..+++|++|++++|... .++ .....+++|+.|++
T Consensus 336 ~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~--------~~~~~l~~L~~L~l 403 (570)
T 2z63_A 336 KGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS--------SNFLGLEQLEHLDF 403 (570)
T ss_dssp BSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEE--------EEEETCTTCCEEEC
T ss_pred cccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccc--------ccccccCCCCEEEc
Confidence 53332221 457889999999888765521 234667899999999888633 232 13567889999999
Q ss_pred CCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchh-hhhcCCCCCCcccccccCC
Q 038902 824 EGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLE-EIVSSDEPEEKPEAAVSNI 902 (997)
Q Consensus 824 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~l~~l 902 (997)
+++. +..... ...+..+++|++|++++|. +... .+..+..+++|++|++++|.-.. .++.
T Consensus 404 ~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~--------------- 464 (570)
T 2z63_A 404 QHSN-LKQMSE-FSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPD--------------- 464 (570)
T ss_dssp TTSE-EESCTT-SCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECS---------------
T ss_pred cCCc-cccccc-hhhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCcCccccchh---------------
Confidence 9864 332211 1234578999999999984 4443 24566788999999999986432 1211
Q ss_pred CCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 903 PPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 903 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
....+++|++|++++|. ++.+ .+..+.++++|++|++++| +++.++ +..+..+++|++|+++++|-
T Consensus 465 -~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~--------~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 465 -IFTELRNLTFLDLSQCQ-LEQL-SPTAFNSLSSLQVLNMASN-QLKSVP--------DGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp -CCTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCSCCC--------TTTTTTCTTCCEEECCSSCB
T ss_pred -hhhcccCCCEEECCCCc-cccC-ChhhhhcccCCCEEeCCCC-cCCCCC--------HHHhhcccCCcEEEecCCcc
Confidence 12458999999999985 5553 3456778999999999887 566552 44677899999999998764
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.2e-30 Score=317.68 Aligned_cols=440 Identities=18% Similarity=0.110 Sum_probs=228.6
Q ss_pred cCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChh--HhhcCccccEEEecCcccC-CCCccc-cccccCCEE
Q 038902 497 KEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPG--FFEHMREINFLDLSYTNIS-TLPGSI-ECLVKLRSL 571 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~lp~~l-~~l~~L~~L 571 (997)
..++.++++.+.+..+|... .+++|++|++++|.+....+. .++++++|++|++++|.+. ..|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 34444444444443333333 556666666666665443333 4556666666666666554 334333 556666666
Q ss_pred EcCCCCccCCC--c---ccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 572 RAENTHLEKAP--L---KKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 572 ~L~~~~l~~lp--~---~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
++++|.++..+ . +.++++|++|++++|.+..... +..+++|++|++++|.....+|. ++.+++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCC
Confidence 66666655543 2 4556666666666665543322 25566666666666654443443 556666666666554
Q ss_pred CCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCcc-----c--c-ccccceEEe
Q 038902 647 FGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY-----W--E-IASTRSMHL 718 (997)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~--~-~~~L~~L~l 718 (997)
. .....+..++.+++|+.|++++|.+....+.. .+++|+.|++++|... + . +++|+.|++
T Consensus 234 ~----------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 234 K----------LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp C----------CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred c----------CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 2 11122344555666666666655543322222 3455666666555431 0 1 255566666
Q ss_pred ecCc--ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhc-CCcEEeeeccc
Q 038902 719 KNIS--TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARAR-NAEELNVEYCY 795 (997)
Q Consensus 719 ~~~~--~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~-~L~~L~l~~c~ 795 (997)
+++. +.+|..+.. +++|+.|+|.++.-...++...|..+++|++|++++|.+.+..|.. +..++ +|+.|++++|.
T Consensus 302 s~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSE
T ss_pred cCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCC
Confidence 5555 344444332 4556666664433222444334555556666666666554333333 23333 55555555553
Q ss_pred ccceeeec--------------ccc----chhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCC
Q 038902 796 SMKEVFCL--------------EEN----EIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLK 857 (997)
Q Consensus 796 ~l~~~~~~--------------~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~ 857 (997)
....++.. .++ ..+.....+++|+.|+++++. +... .+..++.+++|+.|++++|. +.
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~--~p~~l~~l~~L~~L~L~~n~-l~ 455 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGT--IPSSLGSLSKLRDLKLWLNM-LE 455 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESC--CCGGGGGCTTCCEEECCSSC-CC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCc--ccHHHhcCCCCCEEECCCCc-cc
Confidence 32222100 000 001234445555555555542 2111 01123345556666665553 22
Q ss_pred ccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhccc
Q 038902 858 NIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKEL 937 (997)
Q Consensus 858 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 937 (997)
.. .+..+..+++|++|++++|.-...++. ....+++|+.|++++|. ++.. .+.++..+++|
T Consensus 456 ~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~----------------~l~~l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L 516 (768)
T 3rgz_A 456 GE-IPQELMYVKTLETLILDFNDLTGEIPS----------------GLSNCTNLNWISLSNNR-LTGE-IPKWIGRLENL 516 (768)
T ss_dssp SC-CCGGGGGCTTCCEEECCSSCCCSCCCG----------------GGGGCTTCCEEECCSSC-CCSC-CCGGGGGCTTC
T ss_pred Cc-CCHHHcCCCCceEEEecCCcccCcCCH----------------HHhcCCCCCEEEccCCc-cCCc-CChHHhcCCCC
Confidence 22 133445555666666655532211110 12457889999999886 4432 24567788999
Q ss_pred ceEEeecccccceeecccccccccccccccccccceeccccccccccc
Q 038902 938 KELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELKTIY 985 (997)
Q Consensus 938 ~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~~ 985 (997)
++|++++|.-...+ |..+..+++|+.|++++|+.-..++
T Consensus 517 ~~L~L~~N~l~~~~---------p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 517 AILKLSNNSFSGNI---------PAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CEEECCSSCCEEEC---------CGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CEEECCCCcccCcC---------CHHHcCCCCCCEEECCCCccCCcCC
Confidence 99999887544444 6778889999999999987655554
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.1e-30 Score=307.66 Aligned_cols=353 Identities=17% Similarity=0.130 Sum_probs=238.2
Q ss_pred ceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCC
Q 038902 499 YKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 499 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~ 577 (997)
.+.++..+..+..+|... .+++++|++++|.+..+++..|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 346777777888888744 45899999999999999888899999999999999999866 7789999999999999999
Q ss_pred ccCC-C-cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCC--ChHHhhcCCCCcEEEeecCCCCccc
Q 038902 578 LEKA-P-LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGI--PPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 578 l~~l-p-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
++.+ | .++++++|++|++++|.+..+ |..+.++++|++|++++|. +..+ |. +..+++|++|+++++.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~----- 164 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK--GFPTEKLKVLDFQNNA----- 164 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT--TCCCTTCCEEECCSSC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc--ccCCcccCEEEcccCc-----
Confidence 9886 4 899999999999999999987 6778999999999999998 4454 44 5569999999998863
Q ss_pred ccCCCCCCCChHhhhCCCCCC--EEEEEeccccccccccCCCCCCccEEEEEecCcc-----------------------
Q 038902 653 EETPNPKSAAFKEVASLSRLT--VLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY----------------------- 707 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------- 707 (997)
........++.+++|+ .|++++|.+...++..+. ..+|+.|++.+|...
T Consensus 165 -----l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 165 -----IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp -----CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred -----ccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 1223346688899999 888888887776665543 356666666554310
Q ss_pred ---------c---cccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccc
Q 038902 708 ---------W---EIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 708 ---------~---~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~ 774 (997)
+ ...+++.|+++++. ..++......+++|+.|+++++ .+..++ ..+..+++|++|++++|.+.+.
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp-~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELP-SGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCC-SSCCSCTTCCEEECTTCCCSBG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCC-hhhcccccCCEEECccCCcCcC
Confidence 0 01156666776666 4444443334667777777443 345554 2456667777777777776665
Q ss_pred cchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecC
Q 038902 775 FRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG 854 (997)
Q Consensus 775 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~ 854 (997)
.+ ..+..+++|++|++++|.....++. .....+++|++|+++++. +..+.........+++|++|++++|
T Consensus 317 ~~-~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n- 386 (606)
T 3t6q_A 317 CQ-ISASNFPSLTHLSIKGNTKRLELGT-------GCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN- 386 (606)
T ss_dssp GG-GCGGGCTTCSEEECCSCSSCCBCCS-------STTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-
T ss_pred ch-hhhhccCcCCEEECCCCCcccccch-------hhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-
Confidence 33 2355677777777776654333321 123455566666666543 2222111222345555555555554
Q ss_pred CCCccCChHHHHhhcCCceEeecCC
Q 038902 855 KLKNIFSKTLALKLGKLEQLSFQKC 879 (997)
Q Consensus 855 ~L~~l~~~~~~~~l~~L~~L~l~~c 879 (997)
.+..+ .+..+..+++|++|++++|
T Consensus 387 ~l~~~-~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 387 EPLSL-KTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCEEE-CTTTTTTCTTCSEEECTTC
T ss_pred cCCcC-CHHHhcCCccCCeEECCCC
Confidence 22222 1233344555555555544
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.8e-29 Score=302.41 Aligned_cols=426 Identities=17% Similarity=0.163 Sum_probs=278.1
Q ss_pred ceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCC
Q 038902 499 YKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 499 ~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~ 577 (997)
-+.++.+++.+..+|... .+++++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 456888888899998754 48999999999999999998899999999999999999977 5678999999999999999
Q ss_pred ccCC-C-cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 578 LEKA-P-LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 578 l~~l-p-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
++.+ | .++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|+++++....
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~--- 167 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT--- 167 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE---
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee---
Confidence 9988 5 8999999999999999999886 779999999999999998443 56776 8999999999998863211
Q ss_pred cCCCCCCCChHhhhCCCC-CCEEEEEeccccccccccCCCCCCccEEEEEecCccc--------cccccceEEee-----
Q 038902 654 ETPNPKSAAFKEVASLSR-LTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW--------EIASTRSMHLK----- 719 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--------~~~~L~~L~l~----- 719 (997)
.....+..+.+++. +..|++++|.+..++...+... +|+.|++++|.... .++.++.+.+.
T Consensus 168 ----~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 168 ----ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp ----ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ----cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 11223344555544 5688999888887777665544 78888888875420 23333333321
Q ss_pred ---------------------------cC-c--ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEecc
Q 038902 720 ---------------------------NI-S--TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRAC 769 (997)
Q Consensus 720 ---------------------------~~-~--~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~ 769 (997)
.. . +..|. ...+++|+.|++.++. +..++ .+..+++|++|++++|
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRC 317 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccc
Confidence 11 1 22222 2235667777774433 34443 4556667777777777
Q ss_pred CCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEE
Q 038902 770 SLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMR 849 (997)
Q Consensus 770 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 849 (997)
.+..+ | .+ .+++|+.|++++|.....+ ....+++|+.|+++++. ++.+.........+++|++|+
T Consensus 318 ~l~~l-p-~~--~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 318 QLKQF-P-TL--DLPFLKSLTLTMNKGSISF----------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCSSC-C-CC--CCSSCCEEEEESCSSCEEC----------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEE
T ss_pred cCccc-c-cC--CCCccceeeccCCcCccch----------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeE
Confidence 76444 3 22 5677777777766444332 22345555555555432 222110011123344444444
Q ss_pred EeecC----------------------CCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCc
Q 038902 850 VKECG----------------------KLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPI 907 (997)
Q Consensus 850 l~~C~----------------------~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~ 907 (997)
+++|. .+....+...+..+++|++|++++|......+ .....
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------~~~~~ 446 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD----------------GIFLG 446 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT----------------TTTTT
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch----------------hhhcC
Confidence 44432 22222111233344444444444443111100 01245
Q ss_pred CCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 908 FQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 908 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
+++|++|++++|. ++....+..+.++++|++|++++| .++.++ +..+..+++|++|++++|+-
T Consensus 447 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~--------~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 447 LTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQIS--------WGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp CTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEEC--------TTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccC--------hhhhcccccCCEEECCCCcC
Confidence 6788888888875 433223445677888888888877 455442 45677889999999998843
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.1e-29 Score=302.36 Aligned_cols=452 Identities=16% Similarity=0.166 Sum_probs=304.0
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~ 566 (997)
.+|.....++++|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.. ++.++
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 45554467888899998888776542 3788899999999888888888888888999999999988877654 88888
Q ss_pred cCCEEEcCCCCccCC--C-cccccCcccEEEecCCc-ccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEE
Q 038902 567 KLRSLRAENTHLEKA--P-LKKEFKELVILILRGSS-IRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEEL 641 (997)
Q Consensus 567 ~L~~L~L~~~~l~~l--p-~~~~l~~L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 641 (997)
+|++|++++|.++.+ | .++++++|++|++++|. +..+| ..+..+++|++|++++|......|.. ++.+++|++|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceE
Confidence 999999999888754 4 68888899999998887 66665 56888888999999888754445555 7888888888
Q ss_pred EeecCCCCcccccCCCCCCCChH-hhhCCCCCCEEEEEecccccc---ccccCCCCCCccEEEEEecCcc----------
Q 038902 642 YIGNSFGNWELEETPNPKSAAFK-EVASLSRLTVLYIHINSTEVL---SKQFDGPWGNLKRFRVQVNDDY---------- 707 (997)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~---------- 707 (997)
+++++.. ..... .++.+++|+.|++++|.+... +......+++|+.|++.++...
T Consensus 178 ~l~~n~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 178 TLHLSES-----------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp EEECSBS-----------TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred ecccCcc-----------cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 8876521 11111 235688999999998876654 2233345688889988887652
Q ss_pred -ccccccceEEeecCc-ccchHH------HHHhhccccceecCCCCCCccccc-----ccccCCCCccEEEEeccCCccc
Q 038902 708 -WEIASTRSMHLKNIS-TPLADW------VKLLLEKTEDLTLTRSRDLEDIGA-----IEVQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 708 -~~~~~L~~L~l~~~~-~~~~~~------~~~~l~~L~~L~L~~~~~l~~~~~-----~~~~~l~~L~~L~L~~~~l~~~ 774 (997)
..+++++.+.++++. ..++.. ....+++|+.|.+.++. ++.... ..+..+++|+.|++++|.+..+
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 145677888887775 211100 01124567777774432 222110 0122346799999999887765
Q ss_pred cchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecC
Q 038902 775 FRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG 854 (997)
Q Consensus 775 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~ 854 (997)
|..+++.+++|++|++++|.....++.. ....+.+++|+.|++++| .++.+.........+++|++|++++|
T Consensus 326 -p~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N- 397 (549)
T 2z81_A 326 -PCSFSQHLKSLEFLDLSENLMVEEYLKN-----SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN- 397 (549)
T ss_dssp -CHHHHHHCTTCCEEECCSSCCCHHHHHH-----HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-
T ss_pred -CHHHHhcCccccEEEccCCccccccccc-----hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-
Confidence 6566677899999999988754433210 012457788888888886 34443211112457888888888887
Q ss_pred CCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCC-C---cccccccCCCCCCcCCCccEEEEccccccccccchhH
Q 038902 855 KLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPE-E---KPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTI 930 (997)
Q Consensus 855 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-~---~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 930 (997)
+++.+ +..+..+++|++|++++|. ++.++...... . -....+..+ ...+++|++|++++| +++.+ +.
T Consensus 398 ~l~~l--p~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~--~~~l~~L~~L~Ls~N-~l~~i-p~-- 468 (549)
T 2z81_A 398 TFHPM--PDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPRLQELYISRN-KLKTL-PD-- 468 (549)
T ss_dssp CCCCC--CSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCC--CCCCTTCCEEECCSS-CCSSC-CC--
T ss_pred CCccC--ChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhh--cccCChhcEEECCCC-ccCcC-CC--
Confidence 66665 3445667888888888865 33332211000 0 000112221 235789999999997 46665 22
Q ss_pred HhhhcccceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 931 VKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 931 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
...+++|++|++++| +++.++ +..+..+++|++|++++||-
T Consensus 469 ~~~l~~L~~L~Ls~N-~l~~~~--------~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 ASLFPVLLVMKISRN-QLKSVP--------DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGGCTTCCEEECCSS-CCCCCC--------TTGGGGCTTCCEEECCSSCB
T ss_pred cccCccCCEEecCCC-ccCCcC--------HHHHhcCcccCEEEecCCCc
Confidence 356889999999876 566542 45678899999999988874
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=298.59 Aligned_cols=426 Identities=18% Similarity=0.211 Sum_probs=270.6
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l 578 (997)
+.++.++..+..+|... .+++++|++++|.+..+++..|.++++|++|++++|.++.++ ..++++++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 45666667778888643 468999999999999998888999999999999999999774 5789999999999999999
Q ss_pred cCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 579 EKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
+.++ .++++++|++|++++|++..+|. .++++++|++|++++|.... .+|.. ++++++|++|+++++...
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~----- 162 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ----- 162 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC-----
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc-----
Confidence 9876 79999999999999999998875 68999999999999998433 36776 899999999999876321
Q ss_pred CCCCCCCChHhhhCCCCC----CEEEEEeccccccccccCCCCCCccEEEEEecCcc-----------------------
Q 038902 655 TPNPKSAAFKEVASLSRL----TVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY----------------------- 707 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------- 707 (997)
......++.+++| ..|++++|.+..+++..+... +|+.|++.+|...
T Consensus 163 -----~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 163 -----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp -----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred -----eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 1112334444455 688888887776666555433 6777777665210
Q ss_pred ------------------------------------------ccccccceEEeecCc-ccchHHHHHhhccccceecCCC
Q 038902 708 ------------------------------------------WEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRS 744 (997)
Q Consensus 708 ------------------------------------------~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~ 744 (997)
..+++++.|+++++. ..+|.++.. + +|+.|++.++
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n 314 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNC 314 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESC
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccC
Confidence 022334444444433 333333222 1 3444444222
Q ss_pred CCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecC
Q 038902 745 RDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILE 824 (997)
Q Consensus 745 ~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 824 (997)
. +..++. ..+++|+.|++.+|.+....+. ..+++|++|++++|...... . .+.....+++|+.|+++
T Consensus 315 ~-~~~l~~---~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~-~-----~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 315 K-FGQFPT---LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKG-C-----CSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp B-CSSCCB---CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEE-E-----EEHHHHTCSCCCEEECC
T ss_pred c-ccccCc---ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccc-c-----ccccccccCccCEEECC
Confidence 2 222221 1234455555555443332221 34555555555554321110 0 01234456666666666
Q ss_pred CccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCC
Q 038902 825 GLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPP 904 (997)
Q Consensus 825 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~ 904 (997)
++. +..+... +..+++|++|++++| .+....+...+..+++|++|++++|......+. .
T Consensus 382 ~n~-l~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~ 440 (570)
T 2z63_A 382 FNG-VITMSSN---FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------I 440 (570)
T ss_dssp SCS-EEEEEEE---EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTT----------------T
T ss_pred CCc-ccccccc---ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchh----------------h
Confidence 643 3332211 345666777777665 333332223455667777777776642221110 1
Q ss_pred CCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccccccc
Q 038902 905 PPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELKTI 984 (997)
Q Consensus 905 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~ 984 (997)
...+++|++|++++|. ++....+..+..+++|++|++++|. ++.+. |..+..+++|++|++++| +++.+
T Consensus 441 ~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~--------~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLS--------PTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSS-CCSCC
T ss_pred hhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCC--------hhhhhcccCCCEEeCCCC-cCCCC
Confidence 2457899999999986 3311124556788999999998874 55442 567788999999999888 34444
Q ss_pred c
Q 038902 985 Y 985 (997)
Q Consensus 985 ~ 985 (997)
+
T Consensus 510 ~ 510 (570)
T 2z63_A 510 P 510 (570)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.3e-28 Score=293.05 Aligned_cols=403 Identities=16% Similarity=0.138 Sum_probs=300.4
Q ss_pred hcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCC--CCccccccccCCEE
Q 038902 496 LKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST--LPGSIECLVKLRSL 571 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L 571 (997)
..++++|++++|.+..++.. ..+++|++|++++|.+...++..|.++++|++|++++|.++. .|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 67899999999998887753 389999999999999999999989999999999999999984 46789999999999
Q ss_pred EcCCCC-ccCCC--cccccCcccEEEecCCcccc-cCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCC
Q 038902 572 RAENTH-LEKAP--LKKEFKELVILILRGSSIRE-LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSF 647 (997)
Q Consensus 572 ~L~~~~-l~~lp--~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 647 (997)
++++|. +..+| .++++++|++|++++|.+.. .|..+..+++|++|++++|. ...+|...++.+++|+.|+++++.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc
Confidence 999997 66676 79999999999999999886 58889999999999999997 567777656789999999998863
Q ss_pred CCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccc----------------------------------cccCCCC
Q 038902 648 GNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLS----------------------------------KQFDGPW 693 (997)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------------------------------~~~~~~~ 693 (997)
.... ..........+++|+.|+++++.+.... ......+
T Consensus 208 l~~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 208 LARF-------QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp CTTC-------CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred cccc-------cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 2110 0000011234567777777766432110 0112334
Q ss_pred CCccEEEEEecCccc------------cccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCcc-cc--cccccC
Q 038902 694 GNLKRFRVQVNDDYW------------EIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLED-IG--AIEVQG 757 (997)
Q Consensus 694 ~~L~~L~l~~~~~~~------------~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~-~~--~~~~~~ 757 (997)
++|+.|.+.++.... ..++++.|.++++. ..+|.++...+++|+.|+++++. +.. ++ ...+..
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhc
Confidence 566666665554310 23568888888888 77888887678999999996654 332 21 123567
Q ss_pred CCCccEEEEeccCCccccc-hhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccC
Q 038902 758 LTALMTMHLRACSLQRIFR-SSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGN 836 (997)
Q Consensus 758 l~~L~~L~L~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (997)
+++|+.|++++|.++++.+ ...+..+++|++|++++|. ++.++ .....+++|++|+++++. ++.+.
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--------~~~~~~~~L~~L~Ls~N~-l~~l~--- 426 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP--------DSCQWPEKMRFLNLSSTG-IRVVK--- 426 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC--------SCCCCCTTCCEEECTTSC-CSCCC---
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCC--------hhhcccccccEEECCCCC-ccccc---
Confidence 8899999999999877642 2346778999999999884 44444 245678899999999864 54432
Q ss_pred CCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEE
Q 038902 837 HSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLII 916 (997)
Q Consensus 837 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 916 (997)
....++|+.|++++| +++..+ ..+++|++|++++|. ++.++. ...+++|+.|++
T Consensus 427 --~~~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip~-----------------~~~l~~L~~L~L 480 (549)
T 2z81_A 427 --TCIPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLPD-----------------ASLFPVLLVMKI 480 (549)
T ss_dssp --TTSCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCCC-----------------GGGCTTCCEEEC
T ss_pred --chhcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCCC-----------------cccCccCCEEec
Confidence 122468999999997 566652 468899999999973 444332 234889999999
Q ss_pred ccccccccccchhHHhhhcccceEEeeccccc
Q 038902 917 SKCHKMKSVFSLTIVKGLKELKELNIVGCNEM 948 (997)
Q Consensus 917 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L 948 (997)
++|. ++. .++..+..+++|++|++++|+-.
T Consensus 481 s~N~-l~~-~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 481 SRNQ-LKS-VPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CSSC-CCC-CCTTGGGGCTTCCEEECCSSCBC
T ss_pred CCCc-cCC-cCHHHHhcCcccCEEEecCCCcc
Confidence 9974 666 45556789999999999988743
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=296.32 Aligned_cols=436 Identities=14% Similarity=0.103 Sum_probs=274.4
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l 578 (997)
++++++++.+..+|.... ++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 678999999999987554 8999999999999999988899999999999999999976 77899999999999999999
Q ss_pred cCCCcccccCcccEEEecCCcccc--cCccccCCCCCcEEeccCCccCCCCChHHhhcCCCC--cEEEeecCCCCccccc
Q 038902 579 EKAPLKKEFKELVILILRGSSIRE--LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQL--EELYIGNSFGNWELEE 654 (997)
Q Consensus 579 ~~lp~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~~~ 654 (997)
+.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.. .. ..++.+++| ++|++++|....
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l~~---- 152 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLGETYG---- 152 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEECTTTT----
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecccccc----
Confidence 998855 89999999999999886 578899999999999999873 32 226778888 999998763200
Q ss_pred CCCCCCCChHhhhCCCCCCEE--EEEeccc-cccccccCCCCCCccEEEEEecC-------c------cccccccceEEe
Q 038902 655 TPNPKSAAFKEVASLSRLTVL--YIHINST-EVLSKQFDGPWGNLKRFRVQVND-------D------YWEIASTRSMHL 718 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L--~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-------~------~~~~~~L~~L~l 718 (997)
....+..+..++. +.+ +++.|.. ..++...+..+++|+.|++++|. . ...+++++.|.+
T Consensus 153 ----~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 153 ----EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp ----SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ----ccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 1112233333332 233 3333332 22333444556777777777764 1 115566777777
Q ss_pred ecCc--ccchHHHHH--hhccccceecCCCCCCcccccccc----cCCCCccEEEEeccCCccccchhhHHHh---cCCc
Q 038902 719 KNIS--TPLADWVKL--LLEKTEDLTLTRSRDLEDIGAIEV----QGLTALMTMHLRACSLQRIFRSSFYARA---RNAE 787 (997)
Q Consensus 719 ~~~~--~~~~~~~~~--~l~~L~~L~L~~~~~l~~~~~~~~----~~l~~L~~L~L~~~~l~~~~~~~~~~~l---~~L~ 787 (997)
.++. +..+..+.. ..++|+.|+++++.--..++...+ ..+++|+.+++++|.+ .+ |...+..+ .+|+
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec-chhhhhcccccCcee
Confidence 7665 211222211 135788888855542113332211 5677788888887777 33 32223333 5578
Q ss_pred EEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccC-ChHHHH
Q 038902 788 ELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIF-SKTLAL 866 (997)
Q Consensus 788 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~-~~~~~~ 866 (997)
.|++++|.... .+ ....+++|++|+++++. +.... +..+..+++|++|++++| +++.+. .+..+.
T Consensus 306 ~L~l~~n~l~~-~~---------~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 306 NFTVSGTRMVH-ML---------CPSKISPFLHLDFSNNL-LTDTV--FENCGHLTELETLILQMN-QLKELSKIAEMTT 371 (520)
T ss_dssp EEEEESSCCCC-CC---------CCSSCCCCCEEECCSSC-CCTTT--TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred EEEcCCCcccc-cc---------chhhCCcccEEEeECCc-cChhh--hhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence 88887775322 11 11466777777777754 22211 223356777777777775 344431 123456
Q ss_pred hhcCCceEeecCCcchhhhhcCCCCC----Cc---ccccccCCCCCCcC-CCccEEEEccccccccccchhHHhhhcccc
Q 038902 867 KLGKLEQLSFQKCDRLEEIVSSDEPE----EK---PEAAVSNIPPPPIF-QNLQKLIISKCHKMKSVFSLTIVKGLKELK 938 (997)
Q Consensus 867 ~l~~L~~L~l~~c~~l~~l~~~~~~~----~~---~~~~l~~l~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~ 938 (997)
.+++|++|++++|.-...++...-.. .. ....+.... +..+ ++|+.|++++|. ++.+ +..+.++++|+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~L~~L~Ls~N~-l~~i--p~~~~~l~~L~ 447 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHSNK-IKSI--PKQVVKLEALQ 447 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-GGSCCTTCCEEECCSSC-CCCC--CGGGGGCTTCC
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-hhhhcccCCEEECCCCc-cccc--chhhhcCCCCC
Confidence 67777777777754322233211000 00 000000000 1112 577888888763 5543 33334778888
Q ss_pred eEEeecccccceeecccccccccc-cccccccccceecccccc
Q 038902 939 ELNIVGCNEMERIISVSDEERKEE-RADILIQLENLILEDLTE 980 (997)
Q Consensus 939 ~L~i~~C~~L~~l~~~~~~~~~~~-~~~~l~~L~~L~l~~cp~ 980 (997)
+|++++| .++.+ |. .+..+++|++|+++++|-
T Consensus 448 ~L~L~~N-~l~~l---------~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 448 ELNVASN-QLKSV---------PDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCC-cCCcc---------CHHHhccCCcccEEECcCCCC
Confidence 8888776 45555 22 366677888888877653
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.9e-29 Score=309.08 Aligned_cols=441 Identities=18% Similarity=0.170 Sum_probs=258.4
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCC-CCCCChhHhhcCccccEEEecCcccCCC-Ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNA-FDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l 565 (997)
.+|. .+.++++|++++|.+..++.. ..+++|++|++++|. ...+++..|.++++|++|++++|.+..+ |..++++
T Consensus 18 ~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 18 QVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 5565 668899999998888776543 388999999999985 5566677788999999999999988865 7888999
Q ss_pred ccCCEEEcCCCCccC-CC---cccccCcccEEEecCCcccccC--ccccCCCCCcEEeccCCccCCCCChHHhhcC--CC
Q 038902 566 VKLRSLRAENTHLEK-AP---LKKEFKELVILILRGSSIRELP--KGLERWINLKLLDLSNNIFLQGIPPNIISKL--CQ 637 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~-lp---~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~ 637 (997)
++|++|++++|.+++ +| .++++++|++|++++|.+..++ ..++++++|++|++++|......+.. ++.+ ++
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~ 175 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKT 175 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCc
Confidence 999999999998876 34 3889999999999999887663 56889999999999998754444444 6666 88
Q ss_pred CcEEEeecCCCCcccccCCCCCCCChHhhhCCC------CCCEEEEEecccccccc-ccC--------------------
Q 038902 638 LEELYIGNSFGNWELEETPNPKSAAFKEVASLS------RLTVLYIHINSTEVLSK-QFD-------------------- 690 (997)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~-~~~-------------------- 690 (997)
|+.|+++++.... .....++.++ +|+.|++++|.+..... .+.
T Consensus 176 L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 176 LSFFSLAANSLYS----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp SCCCEECCSBSCC----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred cceEECCCCcccc----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 9999987763221 1111122222 48999998875332111 110
Q ss_pred ---------------C--CCCCccEEEEEecCcc-------ccccccceEEeecCc-ccchHHHHHhhccccceecCCCC
Q 038902 691 ---------------G--PWGNLKRFRVQVNDDY-------WEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSR 745 (997)
Q Consensus 691 ---------------~--~~~~L~~L~l~~~~~~-------~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~ 745 (997)
. ..++|+.|++++|... ..+++|+.|+++++. ..++......+++|+.|+|+++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N- 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN- 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-
Confidence 0 0245666666555431 144556666666655 2222222223556666666332
Q ss_pred CCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCC
Q 038902 746 DLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEG 825 (997)
Q Consensus 746 ~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 825 (997)
.+..+....|..+++|+.|++++|.+..+.+ ..+..+++|+.|++++|.. +.+ ..+|+|+.|.+++
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~i------------~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNAL-TTI------------HFIPSIPDIFLSG 390 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCS-CCC------------SSCCSCSEEEEES
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCCC-Ccc------------cCCCCcchhccCC
Confidence 3444444455556666666666666554432 2344556666666665532 111 1255555555555
Q ss_pred ccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCC-----C---cccc
Q 038902 826 LPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPE-----E---KPEA 897 (997)
Q Consensus 826 ~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-----~---~~~~ 897 (997)
+. +..++. ...+++.|+++++ +++.+........+++|+.|+++++. ++.+....... . -...
T Consensus 391 N~-l~~l~~------~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 391 NK-LVTLPK------INLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp CC-CCCCCC------CCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CC-cccccc------cccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCC
Confidence 32 222211 1233444444432 33333223334455666666665543 22111000000 0 0000
Q ss_pred cccCC-------CCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccc
Q 038902 898 AVSNI-------PPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQL 970 (997)
Q Consensus 898 ~l~~l-------~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L 970 (997)
.+... .....+++|+.|++++| +++.+ ++..+.++++|++|+++++ +++.++. ..+ .++|
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~--------~~~--~~~L 528 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTALRGLSLNSN-RLTVLSH--------NDL--PANL 528 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTC-CTTSSSSCCSCSEEEEESC-CCSSCCC--------CCC--CSCC
T ss_pred ccccccccccchhhhcCcccccEEECCCC-ccccc-ChhHccchhhhheeECCCC-CCCccCh--------hhh--hccc
Confidence 00000 01234678888888887 46553 4445677888888888765 5666532 122 2788
Q ss_pred cceeccccc
Q 038902 971 ENLILEDLT 979 (997)
Q Consensus 971 ~~L~l~~cp 979 (997)
++|+++++.
T Consensus 529 ~~L~Ls~N~ 537 (844)
T 3j0a_A 529 EILDISRNQ 537 (844)
T ss_dssp CEEEEEEEC
T ss_pred cEEECCCCc
Confidence 888887764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.3e-29 Score=300.28 Aligned_cols=387 Identities=12% Similarity=0.099 Sum_probs=215.1
Q ss_pred CCCccccccccCCEEEcCCCCccC------------------CC-ccc--ccCcccEEEecCCccc-ccCccccCCCCCc
Q 038902 557 TLPGSIECLVKLRSLRAENTHLEK------------------AP-LKK--EFKELVILILRGSSIR-ELPKGLERWINLK 614 (997)
Q Consensus 557 ~lp~~l~~l~~L~~L~L~~~~l~~------------------lp-~~~--~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~ 614 (997)
.+|..++++++|++|++++|.++. +| .++ ++++|++|++++|++. .+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 344455555555555555555554 44 444 5555555555555433 3444555555555
Q ss_pred EEeccCCc-cCC-CCChHHhhcC------CCCcEEEeecCCCCcccccCCCCCCCChH--hhhCCCCCCEEEEEecccc-
Q 038902 615 LLDLSNNI-FLQ-GIPPNIISKL------CQLEELYIGNSFGNWELEETPNPKSAAFK--EVASLSRLTVLYIHINSTE- 683 (997)
Q Consensus 615 ~L~l~~~~-~~~-~~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~- 683 (997)
+|++++|. ..+ .+|.. ++.+ ++|++|++++|.. ...+. .++.+++|+.|++++|.+.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l-----------~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 277 LINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNL-----------KTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp EEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCC-----------SSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred EEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcC-----------CccCchhhhccCCCCCEEeCcCCcCcc
Confidence 55555554 222 34443 3333 5555555544311 11222 3445555555555555444
Q ss_pred ccccccCCCCCCccEEEEEecCcc------ccccc-cceEEeecCc-ccchHHHHHh-hccccceecCCCCCCccccccc
Q 038902 684 VLSKQFDGPWGNLKRFRVQVNDDY------WEIAS-TRSMHLKNIS-TPLADWVKLL-LEKTEDLTLTRSRDLEDIGAIE 754 (997)
Q Consensus 684 ~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~-L~~L~l~~~~-~~~~~~~~~~-l~~L~~L~L~~~~~l~~~~~~~ 754 (997)
.++ .+..+++|+.|++++|... ..+++ |+.|+++++. ..+|.++... +++|+.|+++++. +.......
T Consensus 345 ~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~ 421 (636)
T 4eco_A 345 KLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKN 421 (636)
T ss_dssp ECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCS
T ss_pred chh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCcchhh
Confidence 333 2333445555555544331 13444 5555665555 4455443221 3478888885543 43333334
Q ss_pred cc-------CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCcc
Q 038902 755 VQ-------GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLP 827 (997)
Q Consensus 755 ~~-------~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (997)
|. .+++|++|++++|.++.+ |...+..+++|++|++++|... .++.............+++|+.|+++++.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc
Confidence 44 577899999999998866 5566777999999999988643 44321000000001233499999999964
Q ss_pred CcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCC-CCC
Q 038902 828 KLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIP-PPP 906 (997)
Q Consensus 828 ~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~-~~~ 906 (997)
++.++... ....+++|+.|++++| +++.+ +..+..+++|++|+++++..+..-.. ...++ ...
T Consensus 500 -l~~lp~~~-~~~~l~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l-----------~~~~p~~l~ 563 (636)
T 4eco_A 500 -LTKLSDDF-RATTLPYLVGIDLSYN-SFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRT-----------LREWPEGIT 563 (636)
T ss_dssp -CCBCCGGG-STTTCTTCCEEECCSS-CCSSC--CCGGGGCSSCCEEECCSCBCTTCCBC-----------CCCCCTTGG
T ss_pred -CCccChhh-hhccCCCcCEEECCCC-CCCCc--ChhhhcCCCCCEEECCCCcccccCcc-----------cccChHHHh
Confidence 55543221 1137899999999996 56665 45567899999999987652211000 00111 124
Q ss_pred cCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccccc
Q 038902 907 IFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELK 982 (997)
Q Consensus 907 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~ 982 (997)
.+++|++|++++|. ++.+ +.. + .++|++|++++|+- ..+....-..........+...+..++.+||.|.
T Consensus 564 ~l~~L~~L~Ls~N~-l~~i-p~~-~--~~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRKV-NEK-I--TPNISVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp GCSSCCEEECCSSC-CCBC-CSC-C--CTTCCEEECCSCTT-CEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cCCCCCEEECCCCc-CCcc-CHh-H--hCcCCEEECcCCCC-ccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 58999999999986 4664 332 2 28999999998864 3332111111112333455566778899999875
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=4.7e-28 Score=295.83 Aligned_cols=281 Identities=22% Similarity=0.214 Sum_probs=215.9
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l 578 (997)
+.++.+++.+..+|... .+++++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45777888888888754 38999999999999999998899999999999999999866 67789999999999999999
Q ss_pred cCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 579 EKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
+.+| .++++++|++|++++|.+..+| ..+.++++|++|++++|.. ...+...++.+++|++|+++++..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l------- 157 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKI------- 157 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCC-------
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcc-------
Confidence 9998 5999999999999999999886 5789999999999999984 444444478999999999987631
Q ss_pred CCCCCCChHhh--hCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc----------cccccceEEeecCc-
Q 038902 656 PNPKSAAFKEV--ASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW----------EIASTRSMHLKNIS- 722 (997)
Q Consensus 656 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------~~~~L~~L~l~~~~- 722 (997)
.......+ ..+++|+.|++++|.+...++..+..+++|+.|.+.++.... ..++++.|.++++.
T Consensus 158 ---~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 158 ---QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp ---CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred ---cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 11122333 356899999999998888777777777888888776655411 33677888887776
Q ss_pred -ccchHHHHHhh--ccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeeccc
Q 038902 723 -TPLADWVKLLL--EKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCY 795 (997)
Q Consensus 723 -~~~~~~~~~~l--~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 795 (997)
+..|.++.. + ++|+.|+|+++ .+..++...|..+++|++|++++|.+.+..+. .+..+++|+.|+++++.
T Consensus 235 ~~~~~~~~~~-l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 235 STTSNTTFLG-LKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CEECTTTTGG-GGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCB
T ss_pred cccChhHhhc-cCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchh
Confidence 333333332 3 34888888544 35555555677788888888888877766443 35567777777776543
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=304.57 Aligned_cols=441 Identities=16% Similarity=0.116 Sum_probs=309.5
Q ss_pred hcCceEEEcccC-CCcCCC-CC-CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCC-CCcc--ccccccCC
Q 038902 496 LKEYKKISLMDS-GINKLP-DE-PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST-LPGS--IECLVKLR 569 (997)
Q Consensus 496 ~~~~~~L~l~~~-~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~--l~~l~~L~ 569 (997)
..+++.|++++| ....++ .. ..+++|++|++++|.+..+.+..|.++++|++|++++|.++. +|.. ++++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 678999999977 455553 33 389999999999999999988889999999999999999984 5554 89999999
Q ss_pred EEEcCCCCccCCC---cccccCcccEEEecCCccccc-CccccCC--CCCcEEeccCCccCCCCChHHhhcCCC------
Q 038902 570 SLRAENTHLEKAP---LKKEFKELVILILRGSSIREL-PKGLERW--INLKLLDLSNNIFLQGIPPNIISKLCQ------ 637 (997)
Q Consensus 570 ~L~L~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~l-p~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~------ 637 (997)
+|++++|.++.++ .++++++|++|++++|.+..+ |..+..+ ++|+.|++++|......|.. ++.+++
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCc
Confidence 9999999998763 689999999999999998764 6677777 89999999999866666654 455554
Q ss_pred CcEEEeecCCCCccccc-CCCC-C------------------------CCChHhhhC--CCCCCEEEEEecccccccccc
Q 038902 638 LEELYIGNSFGNWELEE-TPNP-K------------------------SAAFKEVAS--LSRLTVLYIHINSTEVLSKQF 689 (997)
Q Consensus 638 L~~L~l~~~~~~~~~~~-~~~~-~------------------------~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~ 689 (997)
|++|+++++........ .... . ......+.. .++|+.|++++|.+...++..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 99999987632211110 0000 0 000111222 368999999999988888888
Q ss_pred CCCCCCccEEEEEecCcc-------ccccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCCc
Q 038902 690 DGPWGNLKRFRVQVNDDY-------WEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTAL 761 (997)
Q Consensus 690 ~~~~~~L~~L~l~~~~~~-------~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L 761 (997)
+..+++|+.|++++|.+. ..+++|+.|+++++. ..++......+++|+.|+++++ .+..++...|..+++|
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKL 364 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCC
Confidence 888999999999998872 167899999999998 4442222234789999999654 5777777788899999
Q ss_pred cEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeee---------ccccc-----hhhhhccccccceeecCCcc
Q 038902 762 MTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFC---------LEENE-----IEEEQAGLRKLRELILEGLP 827 (997)
Q Consensus 762 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---------~~~~~-----~~~~~~~~~~L~~L~l~~~~ 827 (997)
+.|++++|.++.+. .+++|+.|++++|... .++. +..+. .......+|+|+.|+++++.
T Consensus 365 ~~L~Ls~N~l~~i~------~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 365 QTLDLRDNALTTIH------FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CEEEEETCCSCCCS------SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CEEECCCCCCCccc------CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 99999999987652 2789999999987532 3321 11111 01112356777777777643
Q ss_pred CcceecccCCCcccCCCccEEEEeecCCCCccC----ChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCC
Q 038902 828 KLLTIWKGNHSKAHVENLEIMRVKECGKLKNIF----SKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIP 903 (997)
Q Consensus 828 ~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~ 903 (997)
+..+... .....+++|+.|+++++ .++..+ .+..+..+++|++|++++| .++.++...
T Consensus 438 -l~~~~~~-~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------------- 499 (844)
T 3j0a_A 438 -FSSCSGD-QTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGV-------------- 499 (844)
T ss_dssp -CCCCCSS-SSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTS--------------
T ss_pred -ccccccc-cccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccChhH--------------
Confidence 3322111 11234677777777775 333221 1223455677777777765 344332211
Q ss_pred CCCcCCCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccc
Q 038902 904 PPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTE 980 (997)
Q Consensus 904 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 980 (997)
...+++|+.|+++++ +++.+.+. .+. ++|+.|+++++ +++.++ | ..+++|+.|+++++|-
T Consensus 500 -~~~l~~L~~L~Ls~N-~l~~l~~~-~~~--~~L~~L~Ls~N-~l~~~~--------~---~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 500 -FSHLTALRGLSLNSN-RLTVLSHN-DLP--ANLEILDISRN-QLLAPN--------P---DVFVSLSVLDITHNKF 559 (844)
T ss_dssp -SSSCCSCSEEEEESC-CCSSCCCC-CCC--SCCCEEEEEEE-CCCCCC--------S---CCCSSCCEEEEEEECC
T ss_pred -ccchhhhheeECCCC-CCCccChh-hhh--ccccEEECCCC-cCCCCC--------h---hHhCCcCEEEecCCCc
Confidence 245799999999997 57775333 222 89999999875 455442 2 2356899999987654
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.1e-28 Score=298.40 Aligned_cols=387 Identities=14% Similarity=0.100 Sum_probs=213.3
Q ss_pred CCCccccccccCCEEEcCCCCccC------------------CC-ccc--ccCcccEEEecCCccc-ccCccccCCCCCc
Q 038902 557 TLPGSIECLVKLRSLRAENTHLEK------------------AP-LKK--EFKELVILILRGSSIR-ELPKGLERWINLK 614 (997)
Q Consensus 557 ~lp~~l~~l~~L~~L~L~~~~l~~------------------lp-~~~--~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~ 614 (997)
.+|..++++++|++|+|++|.++. +| .++ ++++|++|++++|++. .+|..+.++++|+
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 355555555555555555555555 44 443 5555555555555432 4455555555555
Q ss_pred EEeccCCc-cCC-CCChHHhhcCC-------CCcEEEeecCCCCcccccCCCCCCCChH--hhhCCCCCCEEEEEecccc
Q 038902 615 LLDLSNNI-FLQ-GIPPNIISKLC-------QLEELYIGNSFGNWELEETPNPKSAAFK--EVASLSRLTVLYIHINSTE 683 (997)
Q Consensus 615 ~L~l~~~~-~~~-~~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~ 683 (997)
+|++++|. ... .+|.. ++.++ +|++|++++|.. ...+. .++.+++|+.|++++|.+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L-----------~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNL-----------EEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCC-----------CBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcC-----------CccCChhhhhcCCCCCEEECCCCCcc
Confidence 55555554 222 24433 33332 555555554421 11222 4555555555555555544
Q ss_pred ccccccCCCCCCccEEEEEecCcc------ccccc-cceEEeecCc-ccchHHHHHh-hccccceecCCCCC---Ccccc
Q 038902 684 VLSKQFDGPWGNLKRFRVQVNDDY------WEIAS-TRSMHLKNIS-TPLADWVKLL-LEKTEDLTLTRSRD---LEDIG 751 (997)
Q Consensus 684 ~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~-L~~L~l~~~~-~~~~~~~~~~-l~~L~~L~L~~~~~---l~~~~ 751 (997)
.++ .+..+++|+.|++++|... ..+++ |+.|+++++. ..+|.++... .++|+.|+|+++.- ++.++
T Consensus 587 ~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 587 HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 443 3344555555555555431 13444 5666666555 4455433221 23488888855442 12222
Q ss_pred ccccc--CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCc
Q 038902 752 AIEVQ--GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKL 829 (997)
Q Consensus 752 ~~~~~--~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 829 (997)
..+. .+++|+.|+|++|.+..+ |...+..+++|+.|++++|. +..++.............+++|+.|+|++| .+
T Consensus 665 -~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 665 -CSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp -SCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred -hhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CC
Confidence 1111 345899999999998865 66666788999999999885 334432110000001223459999999997 45
Q ss_pred ceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCC-CCCcC
Q 038902 830 LTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIP-PPPIF 908 (997)
Q Consensus 830 ~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~-~~~~~ 908 (997)
..++... ....+++|+.|++++| .++.+ +..+..+++|+.|++++|+.+..-.. ...++ ....+
T Consensus 741 ~~lp~~l-~~~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l-----------~~~ip~~l~~L 805 (876)
T 4ecn_A 741 TSLSDDF-RATTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRI-----------LRQWPTGITTC 805 (876)
T ss_dssp CCCCGGG-STTTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECCCCBCTTCCBC-----------CCCCCTTGGGC
T ss_pred ccchHHh-hhccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECCCCCCcccccc-----------cccChHHHhcC
Confidence 5553221 1137899999999986 56665 45567899999999988652221000 01111 12458
Q ss_pred CCccEEEEccccccccccchhHHhhhcccceEEeecccccceeecccccccccccccccccccceecccccccc
Q 038902 909 QNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILIQLENLILEDLTELK 982 (997)
Q Consensus 909 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~ 982 (997)
++|+.|+|++|. +..+ |... .++|+.|+|++|+ +..+....-+.........+..-+..+|.+||.|.
T Consensus 806 ~~L~~L~Ls~N~-L~~I-p~~l---~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKV-DEKL---TPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp SSCCEEECCSSC-CCBC-CSCC---CSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCCEEECCCCC-CCcc-CHhh---cCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 899999999986 4554 3322 3799999998886 44442111111112223334444555778888874
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5e-28 Score=291.07 Aligned_cols=363 Identities=12% Similarity=0.085 Sum_probs=271.5
Q ss_pred hHhhcCccccEEEecCcccCC------------------CCcccc--ccccCCEEEcCCCCccC-CC-cccccCcccEEE
Q 038902 537 GFFEHMREINFLDLSYTNIST------------------LPGSIE--CLVKLRSLRAENTHLEK-AP-LKKEFKELVILI 594 (997)
Q Consensus 537 ~~~~~l~~L~~L~l~~~~i~~------------------lp~~l~--~l~~L~~L~L~~~~l~~-lp-~~~~l~~L~~L~ 594 (997)
..++++++|++|++++|.++. +|..++ ++++|++|++++|.+.. +| .++++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 357889999999999999997 999999 99999999999998664 67 899999999999
Q ss_pred ecCCc-ccc--cCccccCC------CCCcEEeccCCccCCCCCh--HHhhcCCCCcEEEeecCCCCcccccCCCCCCCCh
Q 038902 595 LRGSS-IRE--LPKGLERW------INLKLLDLSNNIFLQGIPP--NIISKLCQLEELYIGNSFGNWELEETPNPKSAAF 663 (997)
Q Consensus 595 L~~~~-l~~--lp~~~~~l------~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 663 (997)
+++|+ +.. +|..++.+ ++|++|++++|. +..+|. . ++.+++|++|++++|.. ....+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l----------~g~ip 347 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQL----------EGKLP 347 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCC----------EEECC
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcC----------ccchh
Confidence 99998 874 88888877 999999999998 458887 5 89999999999987631 11222
Q ss_pred HhhhCCCCCCEEEEEeccccccccccCCCCCC-ccEEEEEecCccc--------cccccceEEeecCc--ccchHHHHH-
Q 038902 664 KEVASLSRLTVLYIHINSTEVLSKQFDGPWGN-LKRFRVQVNDDYW--------EIASTRSMHLKNIS--TPLADWVKL- 731 (997)
Q Consensus 664 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~--------~~~~L~~L~l~~~~--~~~~~~~~~- 731 (997)
.++.+++|+.|++++|.+..++.. +..+++ |+.|++++|.... .+++|+.|+++++. +..|.++..
T Consensus 348 -~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp -CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred -hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 577888999999999988877655 455777 9999999987621 23479999999987 444444431
Q ss_pred -----hhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHH-------hcCCcEEeeecccccce
Q 038902 732 -----LLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYAR-------ARNAEELNVEYCYSMKE 799 (997)
Q Consensus 732 -----~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~-------l~~L~~L~l~~c~~l~~ 799 (997)
.+++|+.|+|++ +.+..++...+..+++|++|+|++|.++.+ |...+.. +++|+.|++++|... .
T Consensus 426 ~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 426 DPTPFKGINVSSINLSN-NQISKFPKELFSTGSPLSSINLMGNMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp CSSCCCCCCEEEEECCS-SCCCSCCTHHHHTTCCCSEEECCSSCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred ccccccCCCCCEEECcC-CccCcCCHHHHccCCCCCEEECCCCCCCCc-CHHHhccccccccccCCccEEECcCCcCC-c
Confidence 246899999955 446777777777899999999999998865 4433332 339999999998643 5
Q ss_pred eeeccccchhhhhc--cccccceeecCCccCcceecccCCCcccCCCccEEEEeecC-----CCCccCChHHHHhhcCCc
Q 038902 800 VFCLEENEIEEEQA--GLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG-----KLKNIFSKTLALKLGKLE 872 (997)
Q Consensus 800 ~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~-----~L~~l~~~~~~~~l~~L~ 872 (997)
++ .... .+++|+.|+++++. ++.++ .....+++|+.|++++|+ ++... .+..+..+++|+
T Consensus 503 lp--------~~~~~~~l~~L~~L~Ls~N~-l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~ 569 (636)
T 4eco_A 503 LS--------DDFRATTLPYLVGIDLSYNS-FSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLT 569 (636)
T ss_dssp CC--------GGGSTTTCTTCCEEECCSSC-CSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCC
T ss_pred cC--------hhhhhccCCCcCEEECCCCC-CCCcC---hhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCC
Confidence 54 2344 89999999999964 55442 334579999999997543 23333 245678899999
Q ss_pred eEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccc----hhHHhh---hcccceEEeecc
Q 038902 873 QLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFS----LTIVKG---LKELKELNIVGC 945 (997)
Q Consensus 873 ~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~----~~~~~~---l~~L~~L~i~~C 945 (997)
+|++++|.- +.++. ..+++|+.|++++|+ +..+-. +..... +...+..+|.+|
T Consensus 570 ~L~Ls~N~l-~~ip~------------------~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C 629 (636)
T 4eco_A 570 QLQIGSNDI-RKVNE------------------KITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629 (636)
T ss_dssp EEECCSSCC-CBCCS------------------CCCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESC
T ss_pred EEECCCCcC-CccCH------------------hHhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCC
Confidence 999999764 44332 125899999999997 332211 112222 233456688888
Q ss_pred cccc
Q 038902 946 NEME 949 (997)
Q Consensus 946 ~~L~ 949 (997)
+.|+
T Consensus 630 ~~L~ 633 (636)
T 4eco_A 630 DALD 633 (636)
T ss_dssp GGGC
T ss_pred cccc
Confidence 8765
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.9e-26 Score=264.85 Aligned_cols=325 Identities=19% Similarity=0.248 Sum_probs=218.6
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCC
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLR 569 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~ 569 (997)
.++...+.+++.|++.++.+..++....+++|++|++++|.+..+++ +.++++|++|++++|.+..++. ++++++|+
T Consensus 39 ~i~~~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 39 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT 115 (466)
T ss_dssp EECHHHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred ccChhHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCC
Confidence 34445578999999999999999876689999999999999888876 7899999999999999998877 99999999
Q ss_pred EEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCC
Q 038902 570 SLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGN 649 (997)
Q Consensus 570 ~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 649 (997)
+|++++|.++.++.+.++++|++|++++|.+..+| .+..+++|++|+++++ ...++. ++.+++|++|++++|..
T Consensus 116 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l- 189 (466)
T 1o6v_A 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKV- 189 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCC-
T ss_pred EEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcC-
Confidence 99999999999988999999999999999988876 4889999999999743 445554 78999999999987631
Q ss_pred cccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHH
Q 038902 650 WELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWV 729 (997)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 729 (997)
..+..+..+++|+.|++++|.+...++ ...+++|+.|++++|.... ++ .+
T Consensus 190 -----------~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------~~-~l 239 (466)
T 1o6v_A 190 -----------SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----------------IG-TL 239 (466)
T ss_dssp -----------CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----------------CG-GG
T ss_pred -----------CCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc----------------ch-hh
Confidence 112457889999999999998776654 3456888888888776521 10 00
Q ss_pred HHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchh
Q 038902 730 KLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIE 809 (997)
Q Consensus 730 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 809 (997)
..+++|+.|++.++. +..+.. +..+++|++|++++|.+.+..+ +..+++|+.|++++|. ++.++
T Consensus 240 -~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------- 303 (466)
T 1o6v_A 240 -ASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDIS-------- 303 (466)
T ss_dssp -GGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCG--------
T ss_pred -hcCCCCCEEECCCCc-cccchh--hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCch--------
Confidence 113445555553322 222221 3445555555555555444322 3345555555555543 12221
Q ss_pred hhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC
Q 038902 810 EEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC 879 (997)
Q Consensus 810 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 879 (997)
....+++|+.|++++|. +..+ .+...+++|+.|++++| +++.+ ..+..+++|+.|++++|
T Consensus 304 -~~~~l~~L~~L~L~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 304 -PISNLKNLTYLTLYFNN-ISDI----SPVSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHN 363 (466)
T ss_dssp -GGGGCTTCSEEECCSSC-CSCC----GGGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS
T ss_pred -hhcCCCCCCEEECcCCc-CCCc----hhhccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCC
Confidence 23445555555555542 2221 11334555555555554 34433 23444555555555554
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.9e-26 Score=267.35 Aligned_cols=412 Identities=17% Similarity=0.148 Sum_probs=272.7
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCC-C-cccccCcccEEEecCC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKA-P-LKKEFKELVILILRGS 598 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~~~ 598 (997)
++|++++|.+..+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.++.+ | .++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999998886543 89999999999999776 6899999999999999999987 5 8999999999999999
Q ss_pred cccccCccccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCC--CEE
Q 038902 599 SIRELPKGLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRL--TVL 675 (997)
Q Consensus 599 ~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L 675 (997)
++..+|.. .+++|++|++++|.... .+|.. ++.+++|++|+++++... . ..+..+++| +.|
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~----------~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE----------K---SSVLPIAHLNISKV 143 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC----------G---GGGGGGTTSCEEEE
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc----------h---hhccccccceeeEE
Confidence 99999877 89999999999998443 35665 899999999999886311 1 345667777 999
Q ss_pred EEEeccc--cccccccCCCCCCccEEEE--EecCcc--------ccccccceEEeecCc-----ccchHHHH--Hhhccc
Q 038902 676 YIHINST--EVLSKQFDGPWGNLKRFRV--QVNDDY--------WEIASTRSMHLKNIS-----TPLADWVK--LLLEKT 736 (997)
Q Consensus 676 ~l~~~~~--~~~~~~~~~~~~~L~~L~l--~~~~~~--------~~~~~L~~L~l~~~~-----~~~~~~~~--~~l~~L 736 (997)
++++|.+ ....+..+..+.. +.+.+ .+|... ..+++|+.|+++++. ..++..+. ..+++|
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L 222 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTC
T ss_pred Eeeccccccccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccch
Confidence 9999986 4333333332221 23443 333321 157788999988863 11111111 236788
Q ss_pred cceecCCCCCCcccccccc---cCCCCccEEEEeccCCccccchhhH----HHhcCCcEEeeecccccceeeeccccchh
Q 038902 737 EDLTLTRSRDLEDIGAIEV---QGLTALMTMHLRACSLQRIFRSSFY----ARARNAEELNVEYCYSMKEVFCLEENEIE 809 (997)
Q Consensus 737 ~~L~L~~~~~l~~~~~~~~---~~l~~L~~L~L~~~~l~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 809 (997)
+.|++.++. +.......+ ..+++|++|++++|.+.+..|..++ +.+++|+.++++++.. .++.
T Consensus 223 ~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~------- 292 (520)
T 2z7x_B 223 SNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ------- 292 (520)
T ss_dssp CEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-------
T ss_pred hhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch-------
Confidence 888885433 221110000 1146899999999997754455432 6789999999988764 3320
Q ss_pred hhhccc---cccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchh--h
Q 038902 810 EEQAGL---RKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLE--E 884 (997)
Q Consensus 810 ~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~ 884 (997)
.....+ ++|+.|+++++. +... .....+++|++|++++| +++... +..+..+++|++|++++|.--. .
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTR-MVHM----LCPSKISPFLHLDFSNN-LLTDTV-FENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSC-CCCC----CCCSSCCCCCEEECCSS-CCCTTT-TTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred hhhhcccccCceeEEEcCCCc-cccc----cchhhCCcccEEEeECC-ccChhh-hhhhccCCCCCEEEccCCccCcccc
Confidence 011222 579999999975 3322 11257899999999997 455532 3556789999999999975321 2
Q ss_pred hhcC--CCC-CC---cccccccC-CCC--CCcCCCccEEEEccccccccccchhHHhhh-cccceEEeecccccceeecc
Q 038902 885 IVSS--DEP-EE---KPEAAVSN-IPP--PPIFQNLQKLIISKCHKMKSVFSLTIVKGL-KELKELNIVGCNEMERIISV 954 (997)
Q Consensus 885 l~~~--~~~-~~---~~~~~l~~-l~~--~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~~L~~l~~~ 954 (997)
++.. ... .. -....+.. ++. ...+++|++|++++|. ++...+ ..+ ++|++|++++| +++.+
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~~L~~L~Ls~N-~l~~i--- 436 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIF----RCLPPRIKVLDLHSN-KIKSI--- 436 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGG----GSCCTTCCEEECCSS-CCCCC---
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchh----hhhcccCCEEECCCC-ccccc---
Confidence 2210 000 00 00011111 111 2335666667776664 322111 122 56777777665 45544
Q ss_pred cccccccccccccccccceecccccccccccC
Q 038902 955 SDEERKEERADILIQLENLILEDLTELKTIYN 986 (997)
Q Consensus 955 ~~~~~~~~~~~~l~~L~~L~l~~cp~L~~~~~ 986 (997)
|..+..+++|++|++++| .++.++.
T Consensus 437 ------p~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 437 ------PKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp ------CGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred ------chhhhcCCCCCEEECCCC-cCCccCH
Confidence 566668999999999988 4556554
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.3e-27 Score=285.45 Aligned_cols=353 Identities=12% Similarity=0.110 Sum_probs=219.6
Q ss_pred CCCcCCCCCC-CCCCccEEEccCCCCCC------------------CChhH-hhcCccccEEEecCcccC-CCCcccccc
Q 038902 507 SGINKLPDEP-MCPQLLTLFLQHNAFDK------------------IPPGF-FEHMREINFLDLSYTNIS-TLPGSIECL 565 (997)
Q Consensus 507 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~~~i~-~lp~~l~~l 565 (997)
|.+..+|... .+++|++|++++|.+.. +|..+ |.++++|++|++++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4444566654 78889999999998887 55543 348889999999988755 778888999
Q ss_pred ccCCEEEcCCCC-ccC--CC-cccccC-------cccEEEecCCcccccCc--cccCCCCCcEEeccCCccCCCCChHHh
Q 038902 566 VKLRSLRAENTH-LEK--AP-LKKEFK-------ELVILILRGSSIRELPK--GLERWINLKLLDLSNNIFLQGIPPNII 632 (997)
Q Consensus 566 ~~L~~L~L~~~~-l~~--lp-~~~~l~-------~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l 632 (997)
++|++|++++|. ++. +| .++++. +|++|++++|++..+|. .+.++++|++|++++|. +..+| . +
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-F 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-h
Confidence 999999999987 775 66 566655 89999999998888888 88899999999999887 44888 3 7
Q ss_pred hcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCC-CCEEEEEeccccccccccCC-CCCCccEEEEEecCccccc
Q 038902 633 SKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSR-LTVLYIHINSTEVLSKQFDG-PWGNLKRFRVQVNDDYWEI 710 (997)
Q Consensus 633 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 710 (997)
+.+++|++|++++|.. ...+..+..+++ |+.|++++|.+..++..+.. ..++|+.|++++|......
T Consensus 592 ~~L~~L~~L~Ls~N~l-----------~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQI-----------EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CTTSEESEEECCSSCC-----------SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cCCCcceEEECcCCcc-----------ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 8889999999877632 133345777888 99999998887766644322 1244888888877652111
Q ss_pred cccceEEeecCcccchHHHHH-hhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHH-------H
Q 038902 711 ASTRSMHLKNISTPLADWVKL-LLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYA-------R 782 (997)
Q Consensus 711 ~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~-------~ 782 (997)
+.+ +..+.. .+++|+.|+|++ +.+..++...+..+++|+.|+|++|.+..+ |...+. +
T Consensus 661 p~l------------~~~l~~~~~~~L~~L~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~~~~~~~l~n 726 (876)
T 4ecn_A 661 RNI------------SCSMDDYKGINASTVTLSY-NEIQKFPTELFATGSPISTIILSNNLMTSI-PENSLKPKDGNYKN 726 (876)
T ss_dssp SSC------------SSCTTTCCCCCEEEEECCS-SCCCSCCHHHHHTTCCCSEEECCSCCCSCC-CTTSSSCTTSCCTT
T ss_pred ccc------------hhhhccccCCCcCEEEccC-CcCCccCHHHHccCCCCCEEECCCCcCCcc-ChHHhccccccccc
Confidence 100 000000 012444444422 223344433333445555555555554433 221111 2
Q ss_pred hcCCcEEeeecccccceeeeccccchhhhhc--cccccceeecCCccCcceecccCCCcccCCCccEEEEeecC-----C
Q 038902 783 ARNAEELNVEYCYSMKEVFCLEENEIEEEQA--GLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG-----K 855 (997)
Q Consensus 783 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~-----~ 855 (997)
+++|+.|+|++|. ++.++ .... .+++|+.|+++++. +..++ .....+++|+.|++++|+ +
T Consensus 727 l~~L~~L~Ls~N~-L~~lp--------~~l~~~~l~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 727 TYLLTTIDLRFNK-LTSLS--------DDFRATTLPYLSNMDVSYNC-FSSFP---TQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp GGGCCEEECCSSC-CCCCC--------GGGSTTTCTTCCEEECCSSC-CSSCC---CGGGGCTTCCEEECCCCBCTTCCB
T ss_pred cCCccEEECCCCC-Cccch--------HHhhhccCCCcCEEEeCCCC-CCccc---hhhhcCCCCCEEECCCCCCccccc
Confidence 2355555555553 22332 1222 55666666666642 33321 223456677777776532 2
Q ss_pred CCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEcccc
Q 038902 856 LKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCH 920 (997)
Q Consensus 856 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~ 920 (997)
+... .+..+..+++|++|++++|.- ..++. ..+++|+.|+|++|+
T Consensus 794 l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~------------------~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 794 ILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDE------------------KLTPQLYILDIADNP 838 (876)
T ss_dssp CCCC-CCTTGGGCSSCCEEECCSSCC-CBCCS------------------CCCSSSCEEECCSCT
T ss_pred cccc-ChHHHhcCCCCCEEECCCCCC-CccCH------------------hhcCCCCEEECCCCC
Confidence 2322 245567788888898888753 44332 124789999999987
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.1e-26 Score=264.67 Aligned_cols=343 Identities=21% Similarity=0.280 Sum_probs=270.9
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEec
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILR 596 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~ 596 (997)
.+++++.|+++++.+..++. +..+++|++|++++|.++.+|. ++.+++|++|++++|.++.++.++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence 57899999999999888764 6889999999999999998887 99999999999999999998889999999999999
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLY 676 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 676 (997)
+|.+..+|. +.++++|++|++++|. +..++. ++.+++|++|+++++.. ....+..+++|+.|+
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~-------------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVT-------------DLKPLANLTTLERLD 183 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCC-------------CCGGGTTCTTCCEEE
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCccc-------------CchhhccCCCCCEEE
Confidence 999998875 8999999999999997 666764 89999999999975321 123488999999999
Q ss_pred EEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccccc
Q 038902 677 IHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQ 756 (997)
Q Consensus 677 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 756 (997)
+++|.+..++. +..+++|+.|++++|.. ...+. ...+++|+.|++.++ .+..++ .+.
T Consensus 184 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l----------------~~~~~--~~~l~~L~~L~l~~n-~l~~~~--~l~ 240 (466)
T 1o6v_A 184 ISSNKVSDISV--LAKLTNLESLIATNNQI----------------SDITP--LGILTNLDELSLNGN-QLKDIG--TLA 240 (466)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECCSSCC----------------CCCGG--GGGCTTCCEEECCSS-CCCCCG--GGG
T ss_pred CcCCcCCCChh--hccCCCCCEEEecCCcc----------------ccccc--ccccCCCCEEECCCC-Ccccch--hhh
Confidence 99998766543 44567777777766554 11111 123688999999654 355553 567
Q ss_pred CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccC
Q 038902 757 GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGN 836 (997)
Q Consensus 757 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (997)
.+++|++|++++|.+.+..+ +..+++|++|++++|.. ..++ ....+++|+.|++++|. ++.+
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l-~~~~---------~~~~l~~L~~L~L~~n~-l~~~---- 302 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI-SNIS---------PLAGLTALTNLELNENQ-LEDI---- 302 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCC-CCCG---------GGTTCTTCSEEECCSSC-CSCC----
T ss_pred cCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCcc-Cccc---------cccCCCccCeEEcCCCc-ccCc----
Confidence 78999999999999887744 66899999999998853 3332 36688999999999964 4443
Q ss_pred CCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEE
Q 038902 837 HSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLII 916 (997)
Q Consensus 837 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 916 (997)
.+...+++|+.|++++| .++...+ +..+++|+.|++++|. ++.+. ....+++|+.|++
T Consensus 303 ~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-----------------~l~~l~~L~~L~l 360 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS-----------------SLANLTNINWLSA 360 (466)
T ss_dssp GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-----------------GGTTCTTCCEEEC
T ss_pred hhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-----------------hhccCCCCCEEeC
Confidence 23568999999999998 5666632 6789999999999974 44321 1345899999999
Q ss_pred ccccccccccchhHHhhhcccceEEeeccc
Q 038902 917 SKCHKMKSVFSLTIVKGLKELKELNIVGCN 946 (997)
Q Consensus 917 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 946 (997)
++|+ ++...+ +..+++|++|++++|+
T Consensus 361 ~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 361 GHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred CCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 9986 555433 6889999999998875
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.7e-26 Score=269.68 Aligned_cols=421 Identities=18% Similarity=0.177 Sum_probs=243.4
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~ 576 (997)
..++++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3488999999999988754 38999999999999999988899999999999999999977 677899999999999999
Q ss_pred CccCCCcccccCcccEEEecCCcccccC--ccccCCCCCcEEeccCCccCCCCChHHhhcCCCC--cEEEeecCCCCccc
Q 038902 577 HLEKAPLKKEFKELVILILRGSSIRELP--KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQL--EELYIGNSFGNWEL 652 (997)
Q Consensus 577 ~l~~lp~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~ 652 (997)
.++.+|.. .+++|++|++++|.+..+| ..+.++++|++|++++|.. .... +..+++| ++|+++++....
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l~~-- 183 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSYHI-- 183 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSCCC--
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeecccccc--
Confidence 99999854 8999999999999998764 7899999999999999874 3322 4556666 999998763200
Q ss_pred ccCCCCCCCChHhhhCCCCCCE--EEEEeccccc-cccccCCCCCCccEEEEEecCc-----------cccccccceEEe
Q 038902 653 EETPNPKSAAFKEVASLSRLTV--LYIHINSTEV-LSKQFDGPWGNLKRFRVQVNDD-----------YWEIASTRSMHL 718 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~--L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-----------~~~~~~L~~L~l 718 (997)
....+..+..++. +. ++++.|.... .+......+++|+.+++++|.. ....++++.|.+
T Consensus 184 ------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 184 ------KGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp ------CSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ------cccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 0111122222220 12 2333332211 2222223345555555555431 003344444444
Q ss_pred ecCc--c----cchHHHHHhhccccceecCCCCCCcccccccc----cCCC--------------------------Ccc
Q 038902 719 KNIS--T----PLADWVKLLLEKTEDLTLTRSRDLEDIGAIEV----QGLT--------------------------ALM 762 (997)
Q Consensus 719 ~~~~--~----~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~----~~l~--------------------------~L~ 762 (997)
..+. . .++.+.. .++|+.|++.++.--..++...| ..++ +|+
T Consensus 257 ~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 4433 0 1111111 23555565544331112221111 2222 344
Q ss_pred EEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccC
Q 038902 763 TMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHV 842 (997)
Q Consensus 763 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l 842 (997)
+|++++|.+.... +.+.+++|++|++++|.....++ ...+.+++|+.|+++++ .++.+......+..+
T Consensus 335 ~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 335 MLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVF--------QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNM 402 (562)
T ss_dssp EEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTT--------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTC
T ss_pred EEEccCCCccccc---CccCCCCceEEECCCCccccchh--------hhhcccCCCCEEECCCC-CcCCcccchhhhcCC
Confidence 4444444432221 01234555555555543222111 12344555555555553 233221111123345
Q ss_pred CCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcC-CCccEEEEccccc
Q 038902 843 ENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIF-QNLQKLIISKCHK 921 (997)
Q Consensus 843 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~L~~L~l~~c~~ 921 (997)
++|++|++++|. ++...+...+..+++|++|++++|.--..+ +..+ ++|+.|++++| +
T Consensus 403 ~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~l~~~L~~L~L~~N-~ 461 (562)
T 3a79_B 403 SSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSV-------------------FRCLPPKVKVLDLHNN-R 461 (562)
T ss_dssp TTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGG-------------------GSSCCTTCSEEECCSS-C
T ss_pred CCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcch-------------------hhhhcCcCCEEECCCC-c
Confidence 555555555542 333112223344555555555554311110 1123 68899999987 5
Q ss_pred cccccchhHHhhhcccceEEeecccccceeeccccccccccc-ccccccccceecccccc
Q 038902 922 MKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEER-ADILIQLENLILEDLTE 980 (997)
Q Consensus 922 L~~l~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~~-~~~l~~L~~L~l~~cp~ 980 (997)
++.+ +. .+.++++|++|++++| +++.+ |.. +..+++|++|+++++|-
T Consensus 462 l~~i-p~-~~~~l~~L~~L~L~~N-~l~~l---------~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 462 IMSI-PK-DVTHLQALQELNVASN-QLKSV---------PDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCC-CT-TTTSSCCCSEEECCSS-CCCCC---------CTTSTTTCTTCCCEECCSCCB
T ss_pred Cccc-Ch-hhcCCCCCCEEECCCC-CCCCC---------CHHHHhcCCCCCEEEecCCCc
Confidence 7664 33 3348889999999775 56665 333 67788999999887763
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=8.5e-26 Score=274.04 Aligned_cols=146 Identities=25% Similarity=0.233 Sum_probs=126.7
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 566 (997)
.+|...+.++++|++++|.+..++.. ..+++|++|++++|.+..+++++|.++++|++|+|++|.++.+|. .+.++.
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 66766678999999999999999864 389999999999999999999999999999999999999998875 579999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCcccc--cCccccCCCCCcEEeccCCccCCCCChHHhhcCC
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRE--LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLC 636 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 636 (997)
+|++|++++|.++.+| .++++++|++|++++|.+.. +|..+..+++|++|++++|. +..++...+..+.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 197 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchh
Confidence 9999999999999987 68999999999999999875 47788999999999999997 5555544344443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2e-24 Score=240.68 Aligned_cols=302 Identities=16% Similarity=0.213 Sum_probs=165.0
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
+.++++|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+..+++|++|++++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence 56666666666666666554456666666666666655544 556666666666666666554 356666666666666
Q ss_pred CCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 576 THLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 576 ~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
|.++.++.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|..
T Consensus 120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l------- 189 (347)
T 4fmz_A 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQI------- 189 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCC-------
T ss_pred CcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcc-------
Confidence 66666655666666666666666433333345666666666666665 344443 45666666666655411
Q ss_pred CCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhcc
Q 038902 656 PNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEK 735 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 735 (997)
..+..+..+++|+.|++++|.+...+. +..+ ++
T Consensus 190 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~----------------------------------------~~ 222 (347)
T 4fmz_A 190 -----EDISPLASLTSLHYFTAYVNQITDITP--VANM----------------------------------------TR 222 (347)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC----------------------------------------TT
T ss_pred -----cccccccCCCccceeecccCCCCCCch--hhcC----------------------------------------Cc
Confidence 011124555566666665555443332 2223 34
Q ss_pred ccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccc
Q 038902 736 TEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGL 815 (997)
Q Consensus 736 L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 815 (997)
|+.|+++++ .+..++. +..+++|++|++++|.++++ + .+..+++|+.|++++|. ++.++ ....+
T Consensus 223 L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~-l~~~~---------~~~~l 286 (347)
T 4fmz_A 223 LNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISDI-N--AVKDLTKLKMLNVGSNQ-ISDIS---------VLNNL 286 (347)
T ss_dssp CCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSC-CCCCG---------GGGGC
T ss_pred CCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCCC-h--hHhcCCCcCEEEccCCc-cCCCh---------hhcCC
Confidence 444444222 2233321 44556666666666665543 1 24456666666666653 22221 34456
Q ss_pred cccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCc
Q 038902 816 RKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCD 880 (997)
Q Consensus 816 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 880 (997)
++|+.|++++|. +.... ...+..+++|++|++++|+ ++.+.+ +..+++|++|++++|+
T Consensus 287 ~~L~~L~L~~n~-l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNED--MEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSC-CCGGG--HHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCc-CCCcC--hhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 666666666653 22211 1112356777777777764 555522 5667777777777764
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.5e-24 Score=258.07 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=124.5
Q ss_pred EEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCcc
Q 038902 501 KISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLE 579 (997)
Q Consensus 501 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~ 579 (997)
..+.++..+..+|... .+++++|++++|.++.+++..|.++++|++|+|++|.|+.+|. .|.++++|++|+|++|.++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3455556677888643 3589999999999999999999999999999999999998864 6899999999999999999
Q ss_pred CCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecC
Q 038902 580 KAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 580 ~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 646 (997)
.+| .+.++++|++|++++|++..+|. .++++++|++|++++|.... .+|.. ++.+++|++|+++++
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCc
Confidence 987 68999999999999999999875 58999999999999998432 34554 789999999999876
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=9e-24 Score=235.29 Aligned_cols=189 Identities=21% Similarity=0.266 Sum_probs=159.1
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
..+++.|+++++.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 7899999999999998888669999999999999988764 48899999999999999998877 89999999999999
Q ss_pred C-CccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 576 T-HLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 576 ~-~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
| .+..++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|+++++..
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l------ 211 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQI------ 211 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCC------
T ss_pred CCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCCC------
Confidence 9 55566689999999999999999988765 8899999999999997 667766 78999999999987621
Q ss_pred CCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecC
Q 038902 655 TPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVND 705 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (997)
.....+..+++|+.|++++|.+...+. +..+++|+.|++++|.
T Consensus 212 ------~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 212 ------TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp ------CCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred ------CCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 111227889999999999998776655 4445666666665544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=245.21 Aligned_cols=281 Identities=19% Similarity=0.149 Sum_probs=193.5
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l 578 (997)
+.+...++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45666666777777643 46888888888888888777788888888888888888865 67788888888888888888
Q ss_pred cCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 579 EKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
+.+| .+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|++|++++|.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-------- 163 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN-------- 163 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC--------
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc--------
Confidence 8887 578888888888888888766 5667888888888888887 445544447888888888887762
Q ss_pred CCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc-------cccccceEEeecCc-ccchH
Q 038902 656 PNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW-------EIASTRSMHLKNIS-TPLAD 727 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~L~~L~l~~~~-~~~~~ 727 (997)
........+..+++|+.|++++|.+..++...+..+++|+.|++++|...- ...+|+.|+++++. ..+|.
T Consensus 164 --l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 164 --LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp --CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred --CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 112223457888888888888888877777777778888888888765411 22355555555555 44444
Q ss_pred HHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecc
Q 038902 728 WVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYC 794 (997)
Q Consensus 728 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c 794 (997)
.....+++|+.|+|+++ .+..++...|..+++|+.|+|++|.+..+.+. .+..+++|+.|++++|
T Consensus 242 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGN 306 (477)
T ss_dssp HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSS
T ss_pred HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCCC
Confidence 44444555666666332 24444444455556666666666655554332 2344555555555554
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=5.9e-24 Score=246.37 Aligned_cols=367 Identities=15% Similarity=0.187 Sum_probs=240.1
Q ss_pred EEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccC-CC-CccccccccCCEEEcCCCCc
Q 038902 501 KISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TL-PGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 501 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l-p~~l~~l~~L~~L~L~~~~l 578 (997)
.+...++.+..+|. -.++|++|++++|.+..+++..|.++++|++|++++|.+. .+ |..+..+++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 45566667777776 3478888888888888887777888888888888888775 44 45678888888888888888
Q ss_pred cCC-C-cccccCcccEEEecCCcccc-cCcc--ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 579 EKA-P-LKKEFKELVILILRGSSIRE-LPKG--LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 579 ~~l-p-~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
+.+ | .++++++|++|++++|.+.. .|.. +..+++|++|++++|......|...++.+++|++|+++++...
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---- 167 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---- 167 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS----
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc----
Confidence 776 4 78888888888888888874 3333 7788888888888887444445554678888888888775311
Q ss_pred cCCCCCCCChHhhhCC--CCCCEEEEEeccccccccccCC--------CCCCccEEEEEecCccccccccceEEeecCcc
Q 038902 654 ETPNPKSAAFKEVASL--SRLTVLYIHINSTEVLSKQFDG--------PWGNLKRFRVQVNDDYWEIASTRSMHLKNIST 723 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~ 723 (997)
......+..+ ++|+.|+++.|.+...+..... .+++|+.|++++|... +
T Consensus 168 ------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---------------~ 226 (455)
T 3v47_A 168 ------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK---------------E 226 (455)
T ss_dssp ------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC---------------H
T ss_pred ------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc---------------c
Confidence 1111222322 5778888887776655443221 2234444444443320 2
Q ss_pred cchHHHHHh--hccccceecCCCCC---------Cccccccccc--CCCCccEEEEeccCCccccchhhHHHhcCCcEEe
Q 038902 724 PLADWVKLL--LEKTEDLTLTRSRD---------LEDIGAIEVQ--GLTALMTMHLRACSLQRIFRSSFYARARNAEELN 790 (997)
Q Consensus 724 ~~~~~~~~~--l~~L~~L~L~~~~~---------l~~~~~~~~~--~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~ 790 (997)
..|..+... .++|+.|++.++.. +.......+. ..++|+.|++++|.+.+..+ ..++.+++|++|+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 305 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLT 305 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEE
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEE
Confidence 333444332 25666666654422 1111111222 23678888998888777644 3466788888998
Q ss_pred eecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcC
Q 038902 791 VEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGK 870 (997)
Q Consensus 791 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 870 (997)
+++|......+ .....+++|+.|+++++ .+..+.. ..+..+++|++|++++| +++.+ .+..+..+++
T Consensus 306 Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 372 (455)
T 3v47_A 306 LAQNEINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDS--RMFENLDKLEVLDLSYN-HIRAL-GDQSFLGLPN 372 (455)
T ss_dssp CTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCCEECG--GGGTTCTTCCEEECCSS-CCCEE-CTTTTTTCTT
T ss_pred CCCCcccccCh--------hHhcCcccCCEEECCCC-ccCCcCh--hHhcCcccCCEEECCCC-ccccc-Chhhcccccc
Confidence 88876432221 24567888999999886 3454422 22357888999999886 55555 3455677888
Q ss_pred CceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEcccccccc
Q 038902 871 LEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKS 924 (997)
Q Consensus 871 L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~ 924 (997)
|++|+++++ .++.++... ...+++|+.|++++++--.+
T Consensus 373 L~~L~L~~N-~l~~~~~~~---------------~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 373 LKELALDTN-QLKSVPDGI---------------FDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCEEECCSS-CCSCCCTTT---------------TTTCTTCCEEECCSSCBCCC
T ss_pred ccEEECCCC-ccccCCHhH---------------hccCCcccEEEccCCCcccC
Confidence 999999885 455543321 23478899999988766544
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7e-24 Score=243.62 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=79.1
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
+.+++.|+++++.+..+|....+++|++|++++|.+..++ +..+++|++|++++|.++.+| ++.+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 4556666666665555554335566666666666555543 455566666666666655553 55566666666666
Q ss_pred CCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 576 THLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 576 ~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|.++.+| ++++++|++|++++|++..++ ++.+++|++|++++|..++.++ ++.+++|++|+++++
T Consensus 116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 116 NKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred CcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 6555554 555566666666666555543 4555566666666554444442 445555555555543
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.9e-24 Score=252.32 Aligned_cols=408 Identities=15% Similarity=0.139 Sum_probs=282.5
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVK 567 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~ 567 (997)
.+|.....+++.|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.. .+++
T Consensus 45 ~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 45 HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 45655568999999999999998853 3899999999999999999888899999999999999999999877 8999
Q ss_pred CCEEEcCCCCccCCC---cccccCcccEEEecCCcccccCccccCCCCC--cEEeccCCcc--CCCCChHHhhc------
Q 038902 568 LRSLRAENTHLEKAP---LKKEFKELVILILRGSSIRELPKGLERWINL--KLLDLSNNIF--LQGIPPNIISK------ 634 (997)
Q Consensus 568 L~~L~L~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~~------ 634 (997)
|++|++++|.++.++ .++++++|++|++++|.+... .+..+++| ++|++++|.. ....|.. +..
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-ccccCcceE
Confidence 999999999998864 799999999999999988753 45566666 9999999875 3333433 333
Q ss_pred --------------------CCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccc-----ccccc
Q 038902 635 --------------------LCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEV-----LSKQF 689 (997)
Q Consensus 635 --------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~ 689 (997)
+++|+.|+++++..... .....+..+..+++|+.|++..+.+.. .+...
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccc------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 33455555544210000 001123345666777777776654321 12222
Q ss_pred CCCCCCccEEEEEecCccc----c-----ccccceEEeecCc---ccch-HHHHHhh--ccccceecCCCCCCccccccc
Q 038902 690 DGPWGNLKRFRVQVNDDYW----E-----IASTRSMHLKNIS---TPLA-DWVKLLL--EKTEDLTLTRSRDLEDIGAIE 754 (997)
Q Consensus 690 ~~~~~~L~~L~l~~~~~~~----~-----~~~L~~L~l~~~~---~~~~-~~~~~~l--~~L~~L~L~~~~~l~~~~~~~ 754 (997)
. .++|+.|++++|.... . .++++.|.+.... ..+| .++...+ .+|+.|++.++. +.... .
T Consensus 274 ~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~ 348 (562)
T 3a79_B 274 W--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMV--C 348 (562)
T ss_dssp T--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCC--C
T ss_pred h--cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-ccccc--C
Confidence 1 2478888888876421 1 1455555554443 3344 3443332 459999996654 33332 1
Q ss_pred ccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcce-ec
Q 038902 755 VQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLT-IW 833 (997)
Q Consensus 755 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~ 833 (997)
...+++|++|++++|.+++..+. .++.+++|++|++++|. ++.++. .+.....+++|+.|+++++. +.. ++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~~~l~~L~~L~l~~N~-l~~~~~ 420 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNG-LKNFFK-----VALMTKNMSSLETLDVSLNS-LNSHAY 420 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSC-CCBTTH-----HHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred ccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCC-cCCccc-----chhhhcCCCCCCEEECCCCc-CCCccC
Confidence 25688999999999998876454 35779999999999875 332211 11245788999999999975 333 33
Q ss_pred ccCCCcccCCCccEEEEeecCCCCccCChHHHHhh-cCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCcc
Q 038902 834 KGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKL-GKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQ 912 (997)
Q Consensus 834 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~ 912 (997)
.. ....+++|++|++++|. ++.. ....+ ++|+.|++++| .++.++.. ...+++|+
T Consensus 421 ~~--~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~~----------------~~~l~~L~ 476 (562)
T 3a79_B 421 DR--TCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPKD----------------VTHLQALQ 476 (562)
T ss_dssp SC--CCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCTT----------------TTSSCCCS
T ss_pred hh--hhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccChh----------------hcCCCCCC
Confidence 22 23478999999999974 4432 22233 68999999997 45544321 12478999
Q ss_pred EEEEccccccccccchhHHhhhcccceEEeecccc
Q 038902 913 KLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNE 947 (997)
Q Consensus 913 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 947 (997)
+|++++|. ++.+ ++..+..+++|++|++++++-
T Consensus 477 ~L~L~~N~-l~~l-~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 477 ELNVASNQ-LKSV-PDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSC-CCCC-CTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCC-CCCC-CHHHHhcCCCCCEEEecCCCc
Confidence 99999975 7764 444578899999999998763
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.6e-23 Score=234.23 Aligned_cols=305 Identities=14% Similarity=0.229 Sum_probs=216.0
Q ss_pred CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccE
Q 038902 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVI 592 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~ 592 (997)
..+++++.|+++++.+..++...|..+++|++|++++|.++.+| ..+..+++|++|++++|.++.++ .++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 46788999999999998999888899999999999999988775 47889999999999999988875 6789999999
Q ss_pred EEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCC
Q 038902 593 LILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSR 671 (997)
Q Consensus 593 L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 671 (997)
|++++|.+..+|.. +..+++|++|++++|. +..+++..++.+++|++|+++++... . ..+..+++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----------~---~~~~~l~~ 187 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT----------H---VDLSLIPS 187 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS----------B---CCGGGCTT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC----------c---cccccccc
Confidence 99999999988876 4789999999999987 45565555788889999988775311 0 02566778
Q ss_pred CCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccc
Q 038902 672 LTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIG 751 (997)
Q Consensus 672 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 751 (997)
|+.|++++|.+..++. .++|+.|++++|.. ..++
T Consensus 188 L~~L~l~~n~l~~~~~-----~~~L~~L~l~~n~l-----------------------------------------~~~~ 221 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAI-----PIAVEELDASHNSI-----------------------------------------NVVR 221 (390)
T ss_dssp CSEEECCSSCCSEEEC-----CSSCSEEECCSSCC-----------------------------------------CEEE
T ss_pred cceeecccccccccCC-----CCcceEEECCCCee-----------------------------------------eecc
Confidence 8888887776543321 13444444443322 2221
Q ss_pred cccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcce
Q 038902 752 AIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLT 831 (997)
Q Consensus 752 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 831 (997)
. ..+++|+.|++++|.+++. ..+..+++|++|++++|......+ .....+++|+.|+++++ .++.
T Consensus 222 ~---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~ 286 (390)
T 3o6n_A 222 G---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMY--------HPFVKMQRLERLYISNN-RLVA 286 (390)
T ss_dssp C---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEES--------GGGTTCSSCCEEECCSS-CCCE
T ss_pred c---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcCh--------hHccccccCCEEECCCC-cCcc
Confidence 1 1134566666666665553 234566677777776664322221 24556778888888875 4555
Q ss_pred ecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCc
Q 038902 832 IWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNL 911 (997)
Q Consensus 832 ~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L 911 (997)
+. .....+++|++|++++| .++.+ +..+..+++|+.|++++|. ++.++ ...+++|
T Consensus 287 ~~---~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~------------------~~~~~~L 341 (390)
T 3o6n_A 287 LN---LYGQPIPTLKVLDLSHN-HLLHV--ERNQPQFDRLENLYLDHNS-IVTLK------------------LSTHHTL 341 (390)
T ss_dssp EE---CSSSCCTTCCEEECCSS-CCCCC--GGGHHHHTTCSEEECCSSC-CCCCC------------------CCTTCCC
T ss_pred cC---cccCCCCCCCEEECCCC-cceec--CccccccCcCCEEECCCCc-cceeC------------------chhhccC
Confidence 42 22346889999999987 67666 4456788999999999875 33321 3458899
Q ss_pred cEEEEcccc
Q 038902 912 QKLIISKCH 920 (997)
Q Consensus 912 ~~L~l~~c~ 920 (997)
+.|++++++
T Consensus 342 ~~L~l~~N~ 350 (390)
T 3o6n_A 342 KNLTLSHND 350 (390)
T ss_dssp SEEECCSSC
T ss_pred CEEEcCCCC
Confidence 999999986
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=9.8e-24 Score=242.40 Aligned_cols=310 Identities=17% Similarity=0.146 Sum_probs=223.9
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEec
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILR 596 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~ 596 (997)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 6889999999999998875 4789999999999999999886 899999999999999999986 8899999999999
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLY 676 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 676 (997)
+|.+..+| +..+++|++|++++|. +..++ ++.+++|++|++++|..... + .++.+++|+.|+
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~-----------~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK-----------L-DVTPQTQLTTLD 176 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC-----------C-CCTTCTTCCEEE
T ss_pred CCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc-----------c-ccccCCcCCEEE
Confidence 99999886 8899999999999998 55664 68899999999987632111 1 367889999999
Q ss_pred EEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccccc
Q 038902 677 IHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQ 756 (997)
Q Consensus 677 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 756 (997)
+++|.+..++ +..+++|+.|++++|.... +.+ ..+++|+.|+++++ .+..++ +.
T Consensus 177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-------~~l------------~~l~~L~~L~Ls~N-~l~~ip---~~ 230 (457)
T 3bz5_A 177 CSFNKITELD---VSQNKLLNRLNCDTNNITK-------LDL------------NQNIQLTFLDCSSN-KLTEID---VT 230 (457)
T ss_dssp CCSSCCCCCC---CTTCTTCCEEECCSSCCSC-------CCC------------TTCTTCSEEECCSS-CCSCCC---CT
T ss_pred CCCCccceec---cccCCCCCEEECcCCcCCe-------ecc------------ccCCCCCEEECcCC-cccccC---cc
Confidence 9999887765 4556778888777665411 001 11466777777433 345443 55
Q ss_pred CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccC
Q 038902 757 GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGN 836 (997)
Q Consensus 757 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (997)
.+++|+.|++++|.++++. .+.+++|+.|++++ ++|+.|++++|..+..++
T Consensus 231 ~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~----------------------n~L~~L~l~~n~~~~~~~--- 281 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQ----------------------TDLLEIDLTHNTQLIYFQ--- 281 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTT----------------------CCCSCCCCTTCTTCCEEE---
T ss_pred ccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccC----------------------CCCCEEECCCCccCCccc---
Confidence 6777888888887776653 23566777666543 357777777776555542
Q ss_pred CCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEE
Q 038902 837 HSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLII 916 (997)
Q Consensus 837 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 916 (997)
.+.+++|+.|++++|+.+..++ ...++|+.|++++|++++.+....+. +..+ +...+++|+.|++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~-----~~~~~L~~L~l~~~~~L~~L~L~~N~-------l~~l-~l~~l~~L~~L~l 346 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLD-----CQAAGITELDLSQNPKLVYLYLNNTE-------LTEL-DVSHNTKLKSLSC 346 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEE-----CTTCCCSCCCCTTCTTCCEEECTTCC-------CSCC-CCTTCTTCSEEEC
T ss_pred --ccccccCCEEECCCCcccceec-----cCCCcceEechhhcccCCEEECCCCc-------cccc-ccccCCcCcEEEC
Confidence 3567888888888887776662 13466666666666555554443321 1111 1344566666666
Q ss_pred ccc
Q 038902 917 SKC 919 (997)
Q Consensus 917 ~~c 919 (997)
+++
T Consensus 347 ~~N 349 (457)
T 3bz5_A 347 VNA 349 (457)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.8e-23 Score=239.97 Aligned_cols=260 Identities=18% Similarity=0.118 Sum_probs=150.5
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCcc-------------ccEEEecCcccCCCCcc
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMRE-------------INFLDLSYTNISTLPGS 561 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~i~~lp~~ 561 (997)
...++.+.++++.+..+|... .+++|++|++++|.+.+..+..++++++ +++|+++++.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 457888888888888888755 8888999999888866544444566655 48889998888887763
Q ss_pred ccccccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEE
Q 038902 562 IECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEEL 641 (997)
Q Consensus 562 l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 641 (997)
.++|++|++++|.++.+|.. +.+|++|++++|.+..+|.. .++|++|++++|. +..+|. ++.+++|++|
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L 158 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFLKII 158 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEE
T ss_pred ---cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCCCEE
Confidence 36888999998888888732 37888999988888877642 2688999998887 556873 7888999999
Q ss_pred EeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc---cccccceEEe
Q 038902 642 YIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW---EIASTRSMHL 718 (997)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~L~~L~l 718 (997)
+++++... .++ ...++|+.|++++|.+..++ .+..+++|+.|++++|.... ..++|+.|++
T Consensus 159 ~l~~N~l~----~lp----------~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l 222 (454)
T 1jl5_A 159 DVDNNSLK----KLP----------DLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222 (454)
T ss_dssp ECCSSCCS----CCC----------CCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred ECCCCcCc----ccC----------CCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEEC
Confidence 98776311 111 11248889999888877765 24567888888888776521 2234555555
Q ss_pred ecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecc
Q 038902 719 KNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYC 794 (997)
Q Consensus 719 ~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c 794 (997)
+++. ..+|. + ..+++|+.|+++++ .+..++. .+++|+.|++++|.+.++ |. .+++|+.|++++|
T Consensus 223 ~~n~l~~lp~-~-~~l~~L~~L~l~~N-~l~~l~~----~~~~L~~L~l~~N~l~~l-~~----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 223 GNNILEELPE-L-QNLPFLTTIYADNN-LLKTLPD----LPPSLEALNVRDNYLTDL-PE----LPQSLTFLDVSEN 287 (454)
T ss_dssp CSSCCSSCCC-C-TTCTTCCEEECCSS-CCSSCCS----CCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSS
T ss_pred cCCcCCcccc-c-CCCCCCCEEECCCC-cCCcccc----cccccCEEECCCCccccc-Cc----ccCcCCEEECcCC
Confidence 5554 33432 1 12445555555332 2332221 124455555555554443 21 1245555555554
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.8e-23 Score=242.27 Aligned_cols=366 Identities=15% Similarity=0.127 Sum_probs=259.5
Q ss_pred CCChhhhcCceEEEcccCCCcCCCC-C-CCCCCccEEEccCCCCC-CCChhHhhcCccccEEEecCcccCCC-Ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPD-E-PMCPQLLTLFLQHNAFD-KIPPGFFEHMREINFLDLSYTNISTL-PGSIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l 565 (997)
.+|. ...++++|++++|.+..++. . ..+++|++|++++|.+. .+++..|.++++|++|++++|.++.+ |..++.+
T Consensus 24 ~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 24 QVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp SCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred cCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 4554 45789999999999888744 3 38999999999999875 66777889999999999999999866 7889999
Q ss_pred ccCCEEEcCCCCccC-CC---cccccCcccEEEecCCccccc-Ccc-ccCCCCCcEEeccCCccCCCCChHHhhcC--CC
Q 038902 566 VKLRSLRAENTHLEK-AP---LKKEFKELVILILRGSSIREL-PKG-LERWINLKLLDLSNNIFLQGIPPNIISKL--CQ 637 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~-lp---~~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~ 637 (997)
++|++|++++|.++. .+ .++++++|++|++++|.+..+ |.. +..+++|++|++++|......+.. +..+ .+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~ 181 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKH 181 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcccccc
Confidence 999999999999987 23 389999999999999999987 544 889999999999999854444433 5655 68
Q ss_pred CcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCC---CCCCccEEEEEecCccc---ccc
Q 038902 638 LEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDG---PWGNLKRFRVQVNDDYW---EIA 711 (997)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~---~~~ 711 (997)
|+.|+++++.... ..... ........+..+++|+.|++++|.+....+..+. ..++|+.|++++|.... ...
T Consensus 182 L~~L~l~~n~l~~-~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 182 FTLLRLSSITLQD-MNEYW-LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEECTTCBCTT-CSTTC-TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccCcccc-cchhh-ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 8899987753111 00000 0000011234568999999999976543322211 23788888887764411 111
Q ss_pred ccceEEeecCcccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEee
Q 038902 712 STRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNV 791 (997)
Q Consensus 712 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l 791 (997)
.+..+. . ..+. ....++|+.|+++++ .+..+....|..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 260 ~~~~~~--~--~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 330 (455)
T 3v47_A 260 NFKDPD--N--FTFK---GLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNL 330 (455)
T ss_dssp SSCCCC--T--TTTG---GGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEC
T ss_pred hhccCc--c--cccc---cccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEEC
Confidence 110000 0 0000 001367889999554 4555555678889999999999999887744 34667899999999
Q ss_pred ecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCC
Q 038902 792 EYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKL 871 (997)
Q Consensus 792 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 871 (997)
++|.. +.++ +.....+++|+.|+++++. ++.+. ...+..+++|++|++++| +++.+ ++..+..+++|
T Consensus 331 s~N~l-~~~~-------~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L 397 (455)
T 3v47_A 331 SQNFL-GSID-------SRMFENLDKLEVLDLSYNH-IRALG--DQSFLGLPNLKELALDTN-QLKSV-PDGIFDRLTSL 397 (455)
T ss_dssp CSSCC-CEEC-------GGGGTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTC
T ss_pred CCCcc-CCcC-------hhHhcCcccCCEEECCCCc-ccccC--hhhccccccccEEECCCC-ccccC-CHhHhccCCcc
Confidence 98854 3332 1345778999999999964 55442 233457899999999995 67776 34556789999
Q ss_pred ceEeecCCcc
Q 038902 872 EQLSFQKCDR 881 (997)
Q Consensus 872 ~~L~l~~c~~ 881 (997)
++|++++++-
T Consensus 398 ~~L~l~~N~l 407 (455)
T 3v47_A 398 QKIWLHTNPW 407 (455)
T ss_dssp CEEECCSSCB
T ss_pred cEEEccCCCc
Confidence 9999998763
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.4e-23 Score=237.57 Aligned_cols=292 Identities=18% Similarity=0.198 Sum_probs=240.6
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 566 (997)
.+|.....+++.|++++|.+..++.. ..+++|++|++++|.+..+.+..|.++++|++|++++|.++.+|. .+.+++
T Consensus 25 ~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 25 AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 55655567999999999999888643 389999999999999999988889999999999999999998875 478999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEe
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYI 643 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 643 (997)
+|++|++++|.++.++ .+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeC
Confidence 9999999999998864 789999999999999999876 5678999999999999997 77888877899999999999
Q ss_pred ecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEecc-ccccccccCCCCCCccEEEEEecCccc-------cccccce
Q 038902 644 GNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINS-TEVLSKQFDGPWGNLKRFRVQVNDDYW-------EIASTRS 715 (997)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~L~~ 715 (997)
+++... ......+..+++|+.|++++|. ...++...+ ...+|+.|++++|.... .+++|+.
T Consensus 184 ~~n~i~----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 184 RHLNIN----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp ESCCCC----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred CCCcCc----------EeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCe
Confidence 886321 1122346788999999999876 344444333 34599999999987621 6789999
Q ss_pred EEeecCc-ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecc
Q 038902 716 MHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYC 794 (997)
Q Consensus 716 L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c 794 (997)
|+++++. ..++......+++|+.|+|.+ +.+..+....|..+++|+.|+|++|.++.+ +...+..+++|+.|+++++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSSCCSCC-CGGGBSCGGGCCEEECCSS
T ss_pred eECCCCcCCccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCCcCcee-CHhHcCCCcccCEEEccCC
Confidence 9999998 555544444578999999955 457777667888999999999999998887 4455677899999999887
Q ss_pred c
Q 038902 795 Y 795 (997)
Q Consensus 795 ~ 795 (997)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 6
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.7e-23 Score=238.50 Aligned_cols=299 Identities=19% Similarity=0.123 Sum_probs=149.8
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccC-CCCccccccccC-------------CEEEcCCCCccCCC
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKL-------------RSLRAENTHLEKAP 582 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L-------------~~L~L~~~~l~~lp 582 (997)
..++|+.|++++|.+..+|. .++++++|++|++++|.+. .+|..++.+.+| ++|++++|.++.+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 45666666666666654443 3466667777777666665 566666666553 66677766666666
Q ss_pred cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCC
Q 038902 583 LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAA 662 (997)
Q Consensus 583 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 662 (997)
.+ .++|++|++++|.+..+|.. +++|++|++++|. +..++.. .++|++|++++|.. ...
T Consensus 88 ~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l-----------~~l 146 (454)
T 1jl5_A 88 EL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQL-----------EKL 146 (454)
T ss_dssp SC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCC-----------SSC
T ss_pred CC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCC-----------CCC
Confidence 42 35666777766666666542 3566677776665 4444431 25666666665421 011
Q ss_pred hHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCcc-----ccccccceEEeecCc-ccchHHHHHhhccc
Q 038902 663 FKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDY-----WEIASTRSMHLKNIS-TPLADWVKLLLEKT 736 (997)
Q Consensus 663 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L 736 (997)
.+++.+++|+.|++++|.+..++.. .++|+.|++++|... ..+++|+.|+++++. ..+|.. .++|
T Consensus 147 -p~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~----~~~L 217 (454)
T 1jl5_A 147 -PELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL----PLSL 217 (454)
T ss_dssp -CCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC----CTTC
T ss_pred -cccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC----cCcc
Confidence 1356666677777766665554432 246666666666541 145666666666665 333321 2466
Q ss_pred cceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhcccc
Q 038902 737 EDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLR 816 (997)
Q Consensus 737 ~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 816 (997)
+.|+++++ .+..++ .+..+++|++|++++|.++.+. . .+++|+.|++++|. ++.++ ..++
T Consensus 218 ~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~-l~~l~-----------~~~~ 277 (454)
T 1jl5_A 218 ESIVAGNN-ILEELP--ELQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNY-LTDLP-----------ELPQ 277 (454)
T ss_dssp CEEECCSS-CCSSCC--CCTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSC-CSCCC-----------CCCT
T ss_pred cEEECcCC-cCCccc--ccCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCc-ccccC-----------cccC
Confidence 66666443 344444 2556666777777666665542 1 23566667666654 22222 1235
Q ss_pred ccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC
Q 038902 817 KLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC 879 (997)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 879 (997)
+|+.|+++++. ++.+.. ..++|+.|++++| .++.+. ...++|++|+++++
T Consensus 278 ~L~~L~ls~N~-l~~l~~------~~~~L~~L~l~~N-~l~~i~-----~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSE------LPPNLYYLNASSN-EIRSLC-----DLPPSLEELNVSNN 327 (454)
T ss_dssp TCCEEECCSSC-CSEESC------CCTTCCEEECCSS-CCSEEC-----CCCTTCCEEECCSS
T ss_pred cCCEEECcCCc-cCcccC------cCCcCCEEECcCC-cCCccc-----CCcCcCCEEECCCC
Confidence 66666666642 333211 1245666666654 333331 01135666666654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.2e-23 Score=244.78 Aligned_cols=305 Identities=16% Similarity=0.202 Sum_probs=198.5
Q ss_pred CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccE
Q 038902 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVI 592 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~ 592 (997)
..+++++.|++++|.+..+++..|..+++|++|++++|.++.+| ..++.+++|++|++++|.++.+| .++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678888888888888888888888888888888888888665 47788888888888888888776 5688888888
Q ss_pred EEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCC
Q 038902 593 LILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSR 671 (997)
Q Consensus 593 L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 671 (997)
|++++|.+..+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|... . ..++.+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~----~---------~~~~~l~~ 193 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT----H---------VDLSLIPS 193 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS----B---------CCGGGCTT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC----C---------cChhhhhh
Confidence 88888888888765 4788888888888887 44555444778888888888765211 0 02556778
Q ss_pred CCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccc
Q 038902 672 LTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIG 751 (997)
Q Consensus 672 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 751 (997)
|+.|++++|.+..++ ..++|+.|++++|.... +|..+ .++|+.|+|+++ .+...
T Consensus 194 L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~----------------~~~~~---~~~L~~L~L~~n-~l~~~- 247 (597)
T 3oja_B 194 LFHANVSYNLLSTLA-----IPIAVEELDASHNSINV----------------VRGPV---NVELTILKLQHN-NLTDT- 247 (597)
T ss_dssp CSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCE----------------EECSC---CSCCCEEECCSS-CCCCC-
T ss_pred hhhhhcccCcccccc-----CCchhheeeccCCcccc----------------ccccc---CCCCCEEECCCC-CCCCC-
Confidence 888888877655432 23567777776665411 11100 245566666333 23332
Q ss_pred cccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcce
Q 038902 752 AIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLT 831 (997)
Q Consensus 752 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 831 (997)
..+..+++|+.|+|++|.+.+..|. .++.+++|+.|++++|. +..++ .....+|+|+.|++++|. +..
T Consensus 248 -~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l~--------~~~~~l~~L~~L~Ls~N~-l~~ 315 (597)
T 3oja_B 248 -AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNR-LVALN--------LYGQPIPTLKVLDLSHNH-LLH 315 (597)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSC-CCEEE--------CSSSCCTTCCEEECCSSC-CCC
T ss_pred -hhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCC-CCCCC--------cccccCCCCcEEECCCCC-CCc
Confidence 2455566777777777776665443 34556777777776654 23332 133456777777777753 333
Q ss_pred ecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCc
Q 038902 832 IWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCD 880 (997)
Q Consensus 832 ~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 880 (997)
++ .....+++|+.|++++|+ ++.+. +..+++|+.|++++++
T Consensus 316 i~---~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VE---RNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CG---GGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred cC---cccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 32 123456777777777753 44441 3456777777777755
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=8.7e-23 Score=231.09 Aligned_cols=301 Identities=18% Similarity=0.201 Sum_probs=240.0
Q ss_pred hcCceEEEcccCCCcCCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEE
Q 038902 496 LKEYKKISLMDSGINKLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLR 572 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~ 572 (997)
..+++.+++.++.+..+|... .+++|++|++++|.+..+++..|..+++|++|++++|.++.+| ..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 688999999999999998853 7899999999999999998888999999999999999999775 5689999999999
Q ss_pred cCCCCccCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCC
Q 038902 573 AENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGN 649 (997)
Q Consensus 573 L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 649 (997)
+++|.++.+| .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ ++.+++|+.|+++++..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l- 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL- 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc-
Confidence 9999999998 3689999999999999999875 558899999999999998 55554 57799999999977521
Q ss_pred cccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHH
Q 038902 650 WELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWV 729 (997)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 729 (997)
..+...++|+.|++++|.+..++... .++|+.|++++|... .. .++
T Consensus 199 --------------~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~----------------~~-~~l 244 (390)
T 3o6n_A 199 --------------STLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT----------------DT-AWL 244 (390)
T ss_dssp --------------SEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCC----------------CC-GGG
T ss_pred --------------cccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCc----------------cc-HHH
Confidence 22445568999999999887775533 367777777766551 11 122
Q ss_pred HHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchh
Q 038902 730 KLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIE 809 (997)
Q Consensus 730 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 809 (997)
..+++|+.|+|+++ .+..+....|..+++|++|++++|.++.+.. ....+++|++|++++|. +..++
T Consensus 245 -~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~-------- 311 (390)
T 3o6n_A 245 -LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNH-LLHVE-------- 311 (390)
T ss_dssp -GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEEC--SSSCCTTCCEEECCSSC-CCCCG--------
T ss_pred -cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccCc--ccCCCCCCCEEECCCCc-ceecC--------
Confidence 23678888888554 4666656678889999999999999877633 23568999999999885 43443
Q ss_pred hhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecC
Q 038902 810 EEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG 854 (997)
Q Consensus 810 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~ 854 (997)
.....+++|+.|++++++ ++.+ +...+++|+.|++++++
T Consensus 312 ~~~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNS-IVTL-----KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCC-----CCCTTCCCSEEECCSSC
T ss_pred ccccccCcCCEEECCCCc-ccee-----CchhhccCCEEEcCCCC
Confidence 245678999999999965 4443 35678999999999863
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2e-23 Score=250.64 Aligned_cols=380 Identities=12% Similarity=0.043 Sum_probs=194.0
Q ss_pred CCCCccEEEccCCCCCCCChhHhhc-Cc-cccEEEecCcc-cC--CCCccccccccCCEEEcCCCCccCCC------ccc
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEH-MR-EINFLDLSYTN-IS--TLPGSIECLVKLRSLRAENTHLEKAP------LKK 585 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~-i~--~lp~~l~~l~~L~~L~L~~~~l~~lp------~~~ 585 (997)
.+++|++|++++|.+.......+.. ++ +|++|++++|. +. .++.....+++|++|++++|.+++.. ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4677888888877655444444444 33 38888887775 22 23333456778888888888665432 345
Q ss_pred ccCcccEEEecCCccc-----ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCC
Q 038902 586 EFKELVILILRGSSIR-----ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKS 660 (997)
Q Consensus 586 ~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 660 (997)
++++|++|++++|.+. .++..+.++++|++|++++|. +..++.. ++.+++|++|+++...... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~-------~~~ 260 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDI-------GMP 260 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCT-------TCT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhccccccccc-------chH
Confidence 6677888888777664 334445577788888887776 4445544 6777888888775421110 011
Q ss_pred CChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhcccccee
Q 038902 661 AAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLT 740 (997)
Q Consensus 661 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 740 (997)
.....+..+++|+.|+++.+....++. ....+++|++|++++|... ......+...+++|+.|+
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~---------------~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLE---------------TEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCC---------------HHHHHHHHTTCTTCCEEE
T ss_pred HHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCC---------------HHHHHHHHHhCcCCCEEe
Confidence 222345566677777766543332222 2223344444444433320 000111223356666666
Q ss_pred cCCCCCCcccccc-cccCCCCccEEEEec----------cC-CccccchhhHHHhcCCcEEeeecccccceeeeccccch
Q 038902 741 LTRSRDLEDIGAI-EVQGLTALMTMHLRA----------CS-LQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEI 808 (997)
Q Consensus 741 L~~~~~l~~~~~~-~~~~l~~L~~L~L~~----------~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 808 (997)
+. .++.+.+.. .+..+++|++|+|++ |. +++.........+++|++|++. |..++... .
T Consensus 325 L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~------~ 395 (592)
T 3ogk_B 325 TR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES------L 395 (592)
T ss_dssp EE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHH------H
T ss_pred cc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHH------H
Confidence 64 222221111 123456677777763 33 4433222234456677777763 33322110 0
Q ss_pred hhhhccccccceeecCC---ccCcceeccc---CCCcccCCCccEEEEeecCC-CCccCChHHHHhhcCCceEeecCCcc
Q 038902 809 EEEQAGLRKLRELILEG---LPKLLTIWKG---NHSKAHVENLEIMRVKECGK-LKNIFSKTLALKLGKLEQLSFQKCDR 881 (997)
Q Consensus 809 ~~~~~~~~~L~~L~l~~---~~~l~~~~~~---~~~~~~l~~L~~L~l~~C~~-L~~l~~~~~~~~l~~L~~L~l~~c~~ 881 (997)
......+++|+.|++++ |+.++..+.. ......+++|++|+++.|.+ +++.........+++|++|++++|.
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~- 474 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG- 474 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-
Confidence 01112366677776653 3333331100 00022466677777766553 3332222233346667777766654
Q ss_pred hhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccceEEeeccc
Q 038902 882 LEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCN 946 (997)
Q Consensus 882 l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 946 (997)
+++.. +..+ ...+++|++|+|++|+ ++....+.....+++|++|++++|+
T Consensus 475 l~~~~------------~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 475 ESDEG------------LMEF--SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SSHHH------------HHHH--HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCHHH------------HHHH--HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 22100 0000 1235667777777766 4443334445566677777776665
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.5e-22 Score=238.81 Aligned_cols=301 Identities=18% Similarity=0.203 Sum_probs=231.6
Q ss_pred hcCceEEEcccCCCcCCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEE
Q 038902 496 LKEYKKISLMDSGINKLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLR 572 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~ 572 (997)
+..++.+++.++.+..+|... .+++|++|++++|.+..+++..|..+++|++|++++|.++.+|. .++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 678999999999999998754 78999999999999999998889999999999999999997764 579999999999
Q ss_pred cCCCCccCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCC
Q 038902 573 AENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGN 649 (997)
Q Consensus 573 L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 649 (997)
+++|.++.+| .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ ++.+++|+.|+++++..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l- 204 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL- 204 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc-
Confidence 9999999998 4699999999999999999875 468999999999999998 55665 56799999999987631
Q ss_pred cccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHH
Q 038902 650 WELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWV 729 (997)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 729 (997)
..+...++|+.|++++|.+..++.... ++|+.|++++|... . +.++
T Consensus 205 --------------~~l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~----------------~-~~~l 250 (597)
T 3oja_B 205 --------------STLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLT----------------D-TAWL 250 (597)
T ss_dssp --------------SEEECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCC----------------C-CGGG
T ss_pred --------------ccccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCC----------------C-Chhh
Confidence 224556789999999998877765432 67888887776651 1 1122
Q ss_pred HHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchh
Q 038902 730 KLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIE 809 (997)
Q Consensus 730 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 809 (997)
. .+++|+.|+|+++ .+..+....|..+++|+.|+|++|.++.+.. ....+++|+.|++++|... .++
T Consensus 251 ~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~Ls~N~l~-~i~-------- 317 (597)
T 3oja_B 251 L-NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLL-HVE-------- 317 (597)
T ss_dssp G-GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCEEEC--SSSCCTTCCEEECCSSCCC-CCG--------
T ss_pred c-cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCCCCc--ccccCCCCcEEECCCCCCC-ccC--------
Confidence 1 2577777777443 3555555667778888888888888776532 2345778888888877533 332
Q ss_pred hhhccccccceeecCCccCcceecccCCCcccCCCccEEEEeecC
Q 038902 810 EEQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECG 854 (997)
Q Consensus 810 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~ 854 (997)
.....+++|+.|++++|. +..+ +...+++|+.|++++++
T Consensus 318 ~~~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNS-IVTL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCC-----CCCTTCCCSEEECCSSC
T ss_pred cccccCCCCCEEECCCCC-CCCc-----ChhhcCCCCEEEeeCCC
Confidence 245667888888888864 3332 35577888888888763
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=4.5e-21 Score=211.75 Aligned_cols=290 Identities=15% Similarity=0.157 Sum_probs=161.5
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCC-C-cccccCcccEEEec
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKA-P-LKKEFKELVILILR 596 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~ 596 (997)
+++.++++++.+..+|... .++|++|++++|.++.++ ..+..+++|++|++++|.++.+ | .++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776666543 356777777777777653 4677777777777777777765 3 67777777777777
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLY 676 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 676 (997)
+|.+..+|..+. ++|++|++++|. +..++...++.+++|++|+++++.... .......+..+ +|+.|+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN--------SGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG--------GGSCTTSSCSC-CCSCCB
T ss_pred CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc--------CCCCcccccCC-ccCEEE
Confidence 777777776554 677777777776 556665556777777777776652110 00112233444 677777
Q ss_pred EEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccccc
Q 038902 677 IHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQ 756 (997)
Q Consensus 677 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 756 (997)
+++|.+..++.... ++ |+.|++++ +.+..++...|.
T Consensus 179 l~~n~l~~l~~~~~---~~----------------------------------------L~~L~l~~-n~i~~~~~~~l~ 214 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP---ET----------------------------------------LNELHLDH-NKIQAIELEDLL 214 (332)
T ss_dssp CCSSBCSSCCSSSC---SS----------------------------------------CSCCBCCS-SCCCCCCTTSST
T ss_pred CcCCCCCccCcccc---CC----------------------------------------CCEEECCC-CcCCccCHHHhc
Confidence 77776555443321 23 33334422 123333333445
Q ss_pred CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccC
Q 038902 757 GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGN 836 (997)
Q Consensus 757 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (997)
.+++|++|++++|.+.++.+ ..+..+++|++|++++|. ++.++ .....+++|+.|+++++ .++.+....
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~l~~~~~~~ 283 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK-LSRVP--------AGLPDLKLLQVVYLHTN-NITKVGVND 283 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC-CCBCC--------TTGGGCTTCCEEECCSS-CCCBCCTTS
T ss_pred CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc-CeecC--------hhhhcCccCCEEECCCC-CCCccChhH
Confidence 55566666666666555432 234455666666665553 22332 23445666666666664 344332211
Q ss_pred CCc----ccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCC
Q 038902 837 HSK----AHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKC 879 (997)
Q Consensus 837 ~~~----~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 879 (997)
+.. ..+++|+.|++.+++-...-..+..+..+++|+.++++++
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 110 1245566666666543211123344555666666666554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.7e-20 Score=206.90 Aligned_cols=239 Identities=17% Similarity=0.245 Sum_probs=142.8
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCC-C-cccccCcccEEEec
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKA-P-LKKEFKELVILILR 596 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~ 596 (997)
+++.++++++.+..+|... .+.|++|++++|.++.+|. .++.+++|++|++++|.++.+ | .++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666676666666655432 2567777777777776654 567777777777777777665 4 67777777777777
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLY 676 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 676 (997)
+|.+..+|..+. ++|++|++++|. +..++...++.+++|++|+++++.... .......+..+++|+.|+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS--------SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG--------GGBCTTGGGGCTTCCEEE
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc--------cCcChhhccCCCCcCEEE
Confidence 777777766544 677777777776 556666556777777777776652110 012234466777777777
Q ss_pred EEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccccc
Q 038902 677 IHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQ 756 (997)
Q Consensus 677 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 756 (997)
+++|.+..++.... ++|+.|++++|. +..+....|.
T Consensus 178 l~~n~l~~l~~~~~---~~L~~L~l~~n~-----------------------------------------l~~~~~~~~~ 213 (330)
T 1xku_A 178 IADTNITTIPQGLP---PSLTELHLDGNK-----------------------------------------ITKVDAASLK 213 (330)
T ss_dssp CCSSCCCSCCSSCC---TTCSEEECTTSC-----------------------------------------CCEECTGGGT
T ss_pred CCCCccccCCcccc---ccCCEEECCCCc-----------------------------------------CCccCHHHhc
Confidence 77776665544321 334444333222 3333334455
Q ss_pred CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCc
Q 038902 757 GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGL 826 (997)
Q Consensus 757 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 826 (997)
.+++|++|++++|.+++..+ ..+..+++|++|++++|. ++.++ .....+++|++|+++++
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK-LVKVP--------GGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSC-CSSCC--------TTTTTCSSCCEEECCSS
T ss_pred CCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCc-CccCC--------hhhccCCCcCEEECCCC
Confidence 56667777777666665533 234556666666666653 22332 23445666666666664
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.4e-20 Score=207.75 Aligned_cols=290 Identities=17% Similarity=0.169 Sum_probs=202.6
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCC
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAEN 575 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~ 575 (997)
.+++.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46778888888888887643 47899999999998888887888999999999999998876 77889999999999999
Q ss_pred CCccCCC-cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCccc
Q 038902 576 THLEKAP-LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 576 ~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
|.++.+| .+. ++|++|++++|.+..++. .+..+++|++|++++|.... .+....++.+++|++|+++++...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--- 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--- 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc---
Confidence 9988887 443 789999999998887764 47889999999999887421 133333788999999999776321
Q ss_pred ccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHh
Q 038902 653 EETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLL 732 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 732 (997)
.+ ... -.++|+.|++++|.+....+..+..+++|+.|++++|... .++......
T Consensus 185 -~l-------~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------~~~~~~~~~ 238 (330)
T 1xku_A 185 -TI-------PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS----------------AVDNGSLAN 238 (330)
T ss_dssp -SC-------CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC----------------EECTTTGGG
T ss_pred -cC-------Ccc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc----------------eeChhhccC
Confidence 11 111 1268999999998887776666777788888888776551 111111122
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhH-----HHhcCCcEEeeecccccceeeeccccc
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFY-----ARARNAEELNVEYCYSMKEVFCLEENE 807 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~-----~~l~~L~~L~l~~c~~l~~~~~~~~~~ 807 (997)
+++|+.|+|+++ .+..++ ..+..+++|++|++++|.++++.+..+. ...++|+.|++.+++....-.
T Consensus 239 l~~L~~L~L~~N-~l~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i------ 310 (330)
T 1xku_A 239 TPHLRELHLNNN-KLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI------ 310 (330)
T ss_dssp STTCCEEECCSS-CCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS------
T ss_pred CCCCCEEECCCC-cCccCC-hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc------
Confidence 567777777444 355554 2466678888888888887776433221 124677888888776321100
Q ss_pred hhhhhccccccceeecCCc
Q 038902 808 IEEEQAGLRKLRELILEGL 826 (997)
Q Consensus 808 ~~~~~~~~~~L~~L~l~~~ 826 (997)
.+.....+++|+.++++++
T Consensus 311 ~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGGTTCCCGGGEEC---
T ss_pred CccccccccceeEEEeccc
Confidence 1124556778888888764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.7e-21 Score=210.33 Aligned_cols=289 Identities=19% Similarity=0.215 Sum_probs=196.7
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCC
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAEN 575 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~ 575 (997)
.+++.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 35778888888888887644 47899999999988888887788899999999999988866 67788899999999999
Q ss_pred CCccCCC-cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCccc
Q 038902 576 THLEKAP-LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 576 ~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
|.++.+| .+. ++|++|++++|.+..+|. .+..+++|++|++++|.... .++...++.+ +|++|+++++...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~--- 185 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT--- 185 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS---
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC---
Confidence 9888887 444 789999999998888865 47889999999999887421 1222335666 8888888775311
Q ss_pred ccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHh
Q 038902 653 EETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLL 732 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 732 (997)
. .+..+ .++|+.|++++|.+...+...+..+++|+.|++++|... .++......
T Consensus 186 -~-------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~----------------~~~~~~~~~ 239 (332)
T 2ft3_A 186 -G-------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR----------------MIENGSLSF 239 (332)
T ss_dssp -S-------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC----------------CCCTTGGGG
T ss_pred -c-------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC----------------cCChhHhhC
Confidence 1 11111 268888899988888777666677777777777766541 111111123
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHH-----HhcCCcEEeeecccccc-eeeecccc
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYA-----RARNAEELNVEYCYSMK-EVFCLEEN 806 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~-----~l~~L~~L~l~~c~~l~-~~~~~~~~ 806 (997)
+++|+.|+|+++ .+..++. .+..+++|+.|++++|.++++.+..+.. .+++|+.|++.+++... .+.
T Consensus 240 l~~L~~L~L~~N-~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~----- 312 (332)
T 2ft3_A 240 LPTLRELHLDNN-KLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ----- 312 (332)
T ss_dssp CTTCCEEECCSS-CCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC-----
T ss_pred CCCCCEEECCCC-cCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC-----
Confidence 567777777433 3555542 3566777888888888777664332211 14667788887776321 111
Q ss_pred chhhhhccccccceeecCCcc
Q 038902 807 EIEEEQAGLRKLRELILEGLP 827 (997)
Q Consensus 807 ~~~~~~~~~~~L~~L~l~~~~ 827 (997)
+.....+++|+.|+++++.
T Consensus 313 --~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 --PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --GGGGTTBCCSTTEEC----
T ss_pred --cccccccchhhhhhccccc
Confidence 1245567788888887754
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=4.5e-22 Score=239.04 Aligned_cols=129 Identities=21% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCCccEEEccCCCCCCCChhHhh-cCccccEEEecCc-ccCC--CCccccccccCCEEEcCCCCccCC-----C-cccc
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFE-HMREINFLDLSYT-NIST--LPGSIECLVKLRSLRAENTHLEKA-----P-LKKE 586 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~i~~--lp~~l~~l~~L~~L~L~~~~l~~l-----p-~~~~ 586 (997)
.+++|+.|++++|.+.......+. .+++|++|++++| .++. ++..+.++++|++|++++|.+++. + ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456777777777765544333343 5677777777766 4442 444445677777777777765442 2 2235
Q ss_pred cCcccEEEecCCc--cc--ccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 587 FKELVILILRGSS--IR--ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 587 l~~L~~L~L~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..++.. +..+++|++|+++.+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 5677777777664 21 12222334567777777766444444433 566677777766543
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.2e-21 Score=235.49 Aligned_cols=396 Identities=15% Similarity=0.089 Sum_probs=233.3
Q ss_pred hcCceEEEcccCCCcCCC-CCC--CCCCccEEEccCCC-CCCC-ChhHhhcCccccEEEecCcccCC-----CCcccccc
Q 038902 496 LKEYKKISLMDSGINKLP-DEP--MCPQLLTLFLQHNA-FDKI-PPGFFEHMREINFLDLSYTNIST-----LPGSIECL 565 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~-~~~--~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~i~~-----lp~~l~~l 565 (997)
..++++|+++++.+.... ... .+++|++|++++|. +... ....+.++++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 457888888876543211 111 57899999998884 3332 23445578899999999887653 23333467
Q ss_pred ccCCEEEcCCCC--cc--CCC-cccccCcccEEEecCC-cccccCccccCCCCCcEEeccCCcc------CCCCChHHhh
Q 038902 566 VKLRSLRAENTH--LE--KAP-LKKEFKELVILILRGS-SIRELPKGLERWINLKLLDLSNNIF------LQGIPPNIIS 633 (997)
Q Consensus 566 ~~L~~L~L~~~~--l~--~lp-~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~------~~~~~~~~l~ 633 (997)
++|++|++++|. +. .++ ...++++|++|++++| .+..+|..+.++++|++|+++.+.. +..++.. ++
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-LS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-HH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-Hh
Confidence 789999998886 21 122 2355788999999888 5566777788888999998776532 1223333 67
Q ss_pred cCCCCcEEE-eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccc-cccCCCCCCccEEEEEecCcccccc
Q 038902 634 KLCQLEELY-IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLS-KQFDGPWGNLKRFRVQVNDDYWEIA 711 (997)
Q Consensus 634 ~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~ 711 (997)
++++|+.|. +.+. ........+..+++|+.|++++|.+.... ......+++|+.|++.+|..
T Consensus 263 ~~~~L~~Ls~~~~~-----------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~----- 326 (594)
T 2p1m_B 263 GCKELRCLSGFWDA-----------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE----- 326 (594)
T ss_dssp TCTTCCEEECCBTC-----------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-----
T ss_pred cCCCcccccCCccc-----------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC-----
Confidence 888888883 2211 11112223346788888888887643211 12233567777777765411
Q ss_pred ccceEEeecCcccchHHHHHhhccccceecC--------CCCCCccccccccc-CCCCccEEEEeccCCccccchhhHHH
Q 038902 712 STRSMHLKNISTPLADWVKLLLEKTEDLTLT--------RSRDLEDIGAIEVQ-GLTALMTMHLRACSLQRIFRSSFYAR 782 (997)
Q Consensus 712 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~--------~~~~l~~~~~~~~~-~l~~L~~L~L~~~~l~~~~~~~~~~~ 782 (997)
......+...+++|+.|+|. ++..+++.+...+. .+++|++|.+..+.+++.....+...
T Consensus 327 -----------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 327 -----------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp -----------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 01112233346778888873 34445544333332 37888998777666766544444456
Q ss_pred hcCCcEEeee-----cccccceeeeccccchhhhhccccccceeecCCccCcceecccCCCcc-cCCCccEEEEeecCCC
Q 038902 783 ARNAEELNVE-----YCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHSKA-HVENLEIMRVKECGKL 856 (997)
Q Consensus 783 l~~L~~L~l~-----~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~l~~L~~L~l~~C~~L 856 (997)
+++|+.|+++ +|..++..+.-. ........+++|+.|++++ .+.... ..... .+++|+.|++++|. +
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~--~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l~~~~~~L~~L~L~~~~-i 468 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDI--GFGAIVEHCKDLRRLSLSG--LLTDKV--FEYIGTYAKKMEMLSVAFAG-D 468 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHH--HHHHHHHHCTTCCEEECCS--SCCHHH--HHHHHHHCTTCCEEEEESCC-S
T ss_pred CCCcceeEeecccCCCcccccCCchhh--HHHHHHhhCCCccEEeecC--cccHHH--HHHHHHhchhccEeeccCCC-C
Confidence 8889999988 566665432100 0112245678888888866 333211 11111 37888899988875 5
Q ss_pred CccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcc
Q 038902 857 KNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKE 936 (997)
Q Consensus 857 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~ 936 (997)
++.........+++|++|++++|+. +.... ..+ ...+++|+.|++++|+. +.-........+|.
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~------------~~~--~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL------------LAN--ASKLETMRSLWMSSCSV-SFGACKLLGQKMPK 532 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSC-CHHHH------------HHT--GGGGGGSSEEEEESSCC-BHHHHHHHHHHCTT
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCC-cHHHH------------HHH--HHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCC
Confidence 4432233336688888888888874 22111 000 13468888888888874 22111222244555
Q ss_pred cceEEe
Q 038902 937 LKELNI 942 (997)
Q Consensus 937 L~~L~i 942 (997)
|+...+
T Consensus 533 l~i~~~ 538 (594)
T 2p1m_B 533 LNVEVI 538 (594)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 544444
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5.6e-22 Score=238.07 Aligned_cols=401 Identities=14% Similarity=0.037 Sum_probs=253.2
Q ss_pred hcCceEEEcccCCCcCCCCC--CC-CCC-ccEEEccCCC-CCCC-ChhHhhcCccccEEEecCcccCC-----CCccccc
Q 038902 496 LKEYKKISLMDSGINKLPDE--PM-CPQ-LLTLFLQHNA-FDKI-PPGFFEHMREINFLDLSYTNIST-----LPGSIEC 564 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~--~~-~~~-L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~i~~-----lp~~l~~ 564 (997)
..+++.|+++++.+...... .. +++ |++|++++|. +... ......++++|++|++++|.+.. ++.....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 46789999997754321110 12 445 9999999886 2111 12334578999999999998753 3334567
Q ss_pred cccCCEEEcCCCCccC-----CC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccC---CCCChHHhhcC
Q 038902 565 LVKLRSLRAENTHLEK-----AP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFL---QGIPPNIISKL 635 (997)
Q Consensus 565 l~~L~~L~L~~~~l~~-----lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~---~~~~~~~l~~l 635 (997)
+++|++|++++|.++. ++ .+.++++|++|++++|.+..+|..+..+++|++|+++.+... ...+.. ++.+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhcc
Confidence 8999999999998863 33 456889999999999999889988999999999999864322 122223 5778
Q ss_pred CCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEecccccccc-ccCCCCCCccEEEEEecCccccccccc
Q 038902 636 CQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSK-QFDGPWGNLKRFRVQVNDDYWEIASTR 714 (997)
Q Consensus 636 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~L~ 714 (997)
++|+.|.+++.. .......+..+++|+.|++++|.+..... .....+++|+.|++.++-.
T Consensus 270 ~~L~~L~l~~~~-----------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~-------- 330 (592)
T 3ogk_B 270 RKLCRLGLSYMG-----------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG-------- 330 (592)
T ss_dssp TTCCEEEETTCC-----------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH--------
T ss_pred ccccccCccccc-----------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC--------
Confidence 899999886531 12233446778899999999987433221 2345578888887772211
Q ss_pred eEEeecCcccchHHHHHhhccccceecCC----------CCCCccccccc-ccCCCCccEEEEeccCCccccchhhHHHh
Q 038902 715 SMHLKNISTPLADWVKLLLEKTEDLTLTR----------SRDLEDIGAIE-VQGLTALMTMHLRACSLQRIFRSSFYARA 783 (997)
Q Consensus 715 ~L~l~~~~~~~~~~~~~~l~~L~~L~L~~----------~~~l~~~~~~~-~~~l~~L~~L~L~~~~l~~~~~~~~~~~l 783 (997)
......+...+++|++|+|.+ |+.++..+... +..+++|++|++..+.+++.....+...+
T Consensus 331 --------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 331 --------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp --------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred --------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 111122333467788888863 66655443222 23478888888866667665444444458
Q ss_pred cCCcEEeeec---ccccceeeeccccchhhhhccccccceeecCCccC-cceecccCCCcccCCCccEEEEeecCCCCcc
Q 038902 784 RNAEELNVEY---CYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPK-LLTIWKGNHSKAHVENLEIMRVKECGKLKNI 859 (997)
Q Consensus 784 ~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 859 (997)
++|+.|++++ |..++..+.- ...+.....+++|++|++++|.+ +..... ......+++|++|++++|. +++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~--~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~ 478 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLD--NGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVG-ESDE 478 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCH--HHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCC-SSHH
T ss_pred CCCcEEEEeecCCCccccCchHH--HHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCC-CCHH
Confidence 8888888874 4445443210 01112345688888888877653 221100 0001247889999998774 5543
Q ss_pred CChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCCcCCCccEEEEccccccccccchhHHhhhcccce
Q 038902 860 FSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKE 939 (997)
Q Consensus 860 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 939 (997)
..+..+..+++|++|++++|+ ++.-... .+ ...+++|+.|+|++|+ ++..........+|.|+.
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~------------~~--~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCC-FSERAIA------------AA--VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCC-CBHHHHH------------HH--HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred HHHHHHhcCcccCeeeccCCC-CcHHHHH------------HH--HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 234455678889999999887 4331100 00 1237889999999987 665433444556676666
Q ss_pred EEeec
Q 038902 940 LNIVG 944 (997)
Q Consensus 940 L~i~~ 944 (997)
..+..
T Consensus 543 ~~~~~ 547 (592)
T 3ogk_B 543 ELIPS 547 (592)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 65543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=209.01 Aligned_cols=195 Identities=21% Similarity=0.201 Sum_probs=147.1
Q ss_pred EEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCcc
Q 038902 501 KISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHLE 579 (997)
Q Consensus 501 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~ 579 (997)
..+.+++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 3566677777777643 35888888888888888777778888888888888888866 456888888888888888888
Q ss_pred CCC--cccccCcccEEEecCCcccccCc--cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 580 KAP--LKKEFKELVILILRGSSIRELPK--GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 580 ~lp--~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
.+| .++++++|++|++++|.+..+|. .+..+++|++|++++|..+..++...++.+++|++|+++++..
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l------- 186 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL------- 186 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-------
Confidence 887 37888888888888888888876 6778888888888888556666655577888888888877531
Q ss_pred CCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 656 PNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.......++.+++|+.|++++|.+..++..+...+++|+.|++++|..
T Consensus 187 ---~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 187 ---QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ---CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ---CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 112234567778888888888877666665555567888888887765
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=5e-20 Score=202.23 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=64.9
Q ss_pred CccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccC
Q 038902 542 MREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSN 620 (997)
Q Consensus 542 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 620 (997)
..+++.|+++++.++.+|..++++++|++|++++|.++.+| .++++++|++|++++|.+..+|..+.++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 45677777777777777777777777777777777777776 67777777777777777777777777777777777777
Q ss_pred CccCCCCChH
Q 038902 621 NIFLQGIPPN 630 (997)
Q Consensus 621 ~~~~~~~~~~ 630 (997)
|...+.+|..
T Consensus 160 n~~~~~~p~~ 169 (328)
T 4fcg_A 160 CPELTELPEP 169 (328)
T ss_dssp ETTCCCCCSC
T ss_pred CCCccccChh
Confidence 7666666654
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.9e-20 Score=202.96 Aligned_cols=247 Identities=18% Similarity=0.160 Sum_probs=157.1
Q ss_pred CCccEEEccCCCCCC--CChhHhhcCccccEEEecC-cccC-CCCccccccccCCEEEcCCCCcc-CCC-cccccCcccE
Q 038902 519 PQLLTLFLQHNAFDK--IPPGFFEHMREINFLDLSY-TNIS-TLPGSIECLVKLRSLRAENTHLE-KAP-LKKEFKELVI 592 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~i~-~lp~~l~~l~~L~~L~L~~~~l~-~lp-~~~~l~~L~~ 592 (997)
.+++.|++++|.+.. ..+..+.++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+| .++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777665 3444567777777777774 5555 56777777777777777777776 455 6777777777
Q ss_pred EEecCCccc-ccCccccCCCCCcEEeccCCccCCCCChHHhhcCC-CCcEEEeecCCCCcccccCCCCCCCChHhhhCCC
Q 038902 593 LILRGSSIR-ELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLC-QLEELYIGNSFGNWELEETPNPKSAAFKEVASLS 670 (997)
Q Consensus 593 L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 670 (997)
|++++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|+++++.. ....+..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l----------~~~~~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL----------TGKIPPTFANLN 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE----------EEECCGGGGGCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee----------eccCChHHhCCc
Confidence 777777776 56677777777777777777644466665 56666 777777765421 112233455554
Q ss_pred CCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccc
Q 038902 671 RLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDI 750 (997)
Q Consensus 671 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 750 (997)
|+.|++++|.+....+..+..+++|+.|++++|.. ...
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-----------------------------------------~~~ 236 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-----------------------------------------AFD 236 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-----------------------------------------CCB
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-----------------------------------------eee
Confidence 77777777766555554445455555555544322 111
Q ss_pred ccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCc
Q 038902 751 GAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKL 829 (997)
Q Consensus 751 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 829 (997)
. ..+..+++|++|++++|.+++..|. .+..+++|+.|++++|.....+| ..+.+++|+.|++.+++.+
T Consensus 237 ~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 L-GKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp G-GGCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEE
T ss_pred c-CcccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCc
Confidence 1 1134567788888888887655454 35667888888888776554554 2356788888888887643
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=209.99 Aligned_cols=196 Identities=21% Similarity=0.273 Sum_probs=159.8
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~ 576 (997)
..+.+...+..+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456777777888888644 478999999999999988888999999999999999998765 67889999999999999
Q ss_pred CccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 577 HLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 577 ~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
.++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|..+..++...+..+++|++|++++|...
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 999987 68999999999999999998864 68899999999999987788888877889999999999876311
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.+..+..+++|+.|++++|.+..+++..+..+++|+.|++.+|.+
T Consensus 199 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 199 --------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp --------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred --------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 112367788899999998888777766666666666666655443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=9.1e-20 Score=210.37 Aligned_cols=196 Identities=21% Similarity=0.258 Sum_probs=159.1
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~ 576 (997)
..+.+...+..+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456777777788888643 478999999999999988888999999999999999998764 67889999999999999
Q ss_pred CccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 577 HLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 577 ~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
.++.+| .+..+++|++|++++|.+..+|. .+.++++|+.|++++|..+..++...+..+++|++|++++|...
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 209 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc----
Confidence 999887 58889999999999999998864 67899999999999987788888877889999999999876311
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.+..+..+++|+.|++++|.+..+.+..+..+++|+.|++++|..
T Consensus 210 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 210 --------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp --------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred --------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 112367788899999988887777666666666666666655443
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.1e-20 Score=201.74 Aligned_cols=245 Identities=16% Similarity=0.185 Sum_probs=195.2
Q ss_pred cCceEEEcccCCCc---CCCCCC-CCCCccEEEccC-CCCCCCChhHhhcCccccEEEecCcccC-CCCccccccccCCE
Q 038902 497 KEYKKISLMDSGIN---KLPDEP-MCPQLLTLFLQH-NAFDKIPPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRS 570 (997)
Q Consensus 497 ~~~~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~ 570 (997)
.++++|+++++.+. .+|... .+++|++|++++ |.+....+..|.++++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999998887 466654 899999999995 8877666677899999999999999998 78999999999999
Q ss_pred EEcCCCCcc-CCC-cccccCcccEEEecCCccc-ccCccccCCC-CCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 571 LRAENTHLE-KAP-LKKEFKELVILILRGSSIR-ELPKGLERWI-NLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 571 L~L~~~~l~-~lp-~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|++++|.++ .+| .++.+++|++|++++|.+. .+|..+..++ +|++|++++|.....+|.. ++.++ |++|+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 999999998 467 8999999999999999998 7899999998 9999999999866677776 78887 999999876
Q ss_pred CCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccch
Q 038902 647 FGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLA 726 (997)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~ 726 (997)
.. .......+..+++|+.|++++|.+....+. +..+++|+.|++++|.
T Consensus 208 ~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~--------------------- 255 (313)
T 1ogq_A 208 ML----------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR--------------------- 255 (313)
T ss_dssp EE----------EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC---------------------
T ss_pred cc----------cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc---------------------
Confidence 31 123445678899999999999987654443 2334444444444332
Q ss_pred HHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeeccccc
Q 038902 727 DWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSM 797 (997)
Q Consensus 727 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 797 (997)
+.......|..+++|++|+|++|.+++.+|.. +.+++|+.|++.+++.+
T Consensus 256 --------------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 256 --------------------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp --------------------CEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEE
T ss_pred --------------------ccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCc
Confidence 22112234667888999999999987666653 67899999999888744
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=5.1e-21 Score=222.10 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCccEEEccCCCCCCCCh-hHhhcCccccEEEecCcccC-----CCCccccccccCCEEEcCCCCccCC--C-cccccC-
Q 038902 519 PQLLTLFLQHNAFDKIPP-GFFEHMREINFLDLSYTNIS-----TLPGSIECLVKLRSLRAENTHLEKA--P-LKKEFK- 588 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~~l--p-~~~~l~- 588 (997)
++|+.|++++|.+..... ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. . ....+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 567888888887665443 33677888888888888877 4566777888889999988877652 2 223344
Q ss_pred ---cccEEEecCCccc-----ccCccccCCCCCcEEeccCCccCCCCChH----HhhcCCCCcEEEeecCCCCcccccCC
Q 038902 589 ---ELVILILRGSSIR-----ELPKGLERWINLKLLDLSNNIFLQGIPPN----IISKLCQLEELYIGNSFGNWELEETP 656 (997)
Q Consensus 589 ---~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~ 656 (997)
+|++|++++|.+. .+|..+..+++|++|++++|......+.. .....++|++|++++|.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----- 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----- 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence 6888888888776 45777888888999998888732211211 112256788888877621100
Q ss_pred CCCCCChHhhhCCCCCCEEEEEecccc
Q 038902 657 NPKSAAFKEVASLSRLTVLYIHINSTE 683 (997)
Q Consensus 657 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 683 (997)
........+..+++|+.|++++|.+.
T Consensus 158 -~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 158 -SCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp -GHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred -HHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 00012344566788888888877644
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=196.08 Aligned_cols=277 Identities=17% Similarity=0.165 Sum_probs=188.6
Q ss_pred CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCCC--cccccCcccE
Q 038902 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKAP--LKKEFKELVI 592 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~ 592 (997)
..|+.....+++++.+..+|... .++|++|++++|.++.+|. .+..+++|++|++++|.++.++ .++++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 35677777899999999888754 3589999999999998865 7899999999999999998875 6899999999
Q ss_pred EEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCCh-HHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCC
Q 038902 593 LILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPP-NIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLS 670 (997)
Q Consensus 593 L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 670 (997)
|++++|.+..+|.. +..+++|++|++++|. +..+|. ..++.+++|++|++++|..... .....++.++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---------~~~~~~~~l~ 174 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK---------IQRKDFAGLT 174 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE---------ECTTTTTTCC
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccc---------cCHHHccCCC
Confidence 99999999998866 7899999999999997 667776 4478899999999987621111 1123567888
Q ss_pred CCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccc
Q 038902 671 RLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDI 750 (997)
Q Consensus 671 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 750 (997)
+|+.|++++|.+....+..+..+++|+.|++++|.. ..+|..+...+++|+.|+++++. +..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----------------~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----------------ILLLEIFVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS----------------TTHHHHHHHHTTTEEEEEEESCB-CTTC
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc----------------ccchhhhhhhcccccEEECCCCc-cccc
Confidence 999999999987777666666667777777665543 34455544445666666664332 3332
Q ss_pred cccc---ccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCcc
Q 038902 751 GAIE---VQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLP 827 (997)
Q Consensus 751 ~~~~---~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (997)
+... ....+.++.+++.++.+.+..- . . .+.....+++|+.|+++++
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l----~-----------------~--------l~~~l~~l~~L~~L~Ls~N- 287 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESL----F-----------------Q--------VMKLLNQISGLLELEFSRN- 287 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHH----H-----------------H--------HHHHHHTCTTCCEEECCSS-
T ss_pred cccccccccccchhhccccccccccCcch----h-----------------h--------hHHHHhcccCCCEEECCCC-
Confidence 2111 1224456666666665443200 0 0 0112345566666666664
Q ss_pred CcceecccCCCcccCCCccEEEEeecC
Q 038902 828 KLLTIWKGNHSKAHVENLEIMRVKECG 854 (997)
Q Consensus 828 ~l~~~~~~~~~~~~l~~L~~L~l~~C~ 854 (997)
.++.++... +..+++|++|++++++
T Consensus 288 ~l~~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 288 QLKSVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCTTT--TTTCTTCCEEECCSSC
T ss_pred CCCccCHHH--HhcCCCCCEEEeeCCC
Confidence 344432211 2456777777777754
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.3e-19 Score=194.04 Aligned_cols=146 Identities=25% Similarity=0.377 Sum_probs=66.1
Q ss_pred cCceEEEcccCCCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 497 KEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
.+++.|+++++.+..+|... .+++|++|++++|.+..++. .+.++++|++|++++|.++.+|..++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 34555555555555554432 44455555555554443332 23444555555555554444444445555555555544
Q ss_pred CC-ccCCC-ccc---------ccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEee
Q 038902 576 TH-LEKAP-LKK---------EFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIG 644 (997)
Q Consensus 576 ~~-l~~lp-~~~---------~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 644 (997)
|. +..+| .++ ++++|++|++++|++..+|..+.++++|++|++++|. +..+|.. ++.+++|++|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEECc
Confidence 32 22233 222 2444444444444444444444444444444444444 2334333 3444444444443
Q ss_pred c
Q 038902 645 N 645 (997)
Q Consensus 645 ~ 645 (997)
+
T Consensus 238 ~ 238 (328)
T 4fcg_A 238 G 238 (328)
T ss_dssp T
T ss_pred C
Confidence 3
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.7e-19 Score=196.73 Aligned_cols=195 Identities=19% Similarity=0.179 Sum_probs=142.3
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC---CccccccccCCEEEcCCC
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL---PGSIECLVKLRSLRAENT 576 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~ 576 (997)
+.+...++.+..+|... .++|+.|++++|.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 35667777777777633 46888888888888888887788888899999988888744 566677888889998888
Q ss_pred CccCCC-cccccCcccEEEecCCcccccCc--cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 577 HLEKAP-LKKEFKELVILILRGSSIRELPK--GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 577 ~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
.++.+| .+..+++|++|++++|.+..++. .+..+++|++|++++|......+ ..++.+++|++|+++++....
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCcccc---
Confidence 888887 78888888888888888887753 67788888888888887433333 337788888888887652110
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecC
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVND 705 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (997)
...+..+..+++|+.|++++|.+...++..+..+++|+.|++++|.
T Consensus 165 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 165 ------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp ------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 0122345677888888888887776665555555666666555443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.3e-18 Score=203.39 Aligned_cols=252 Identities=19% Similarity=0.189 Sum_probs=165.9
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCC
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENT 576 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 576 (997)
..++.|+++++.+..+|.... ++|+.|++++|.+..++. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 357788888888888877544 788888888888877765 46788888888888888876 6788888888888
Q ss_pred CccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCC
Q 038902 577 HLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETP 656 (997)
Q Consensus 577 ~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 656 (997)
.++.+|. .+.+|++|++++|++..+|.. +++|++|++++|. +..+|. .+++|+.|++++|...
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT------- 174 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS-------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC-------
Confidence 8888776 567888888888888888764 4788888888886 556654 3567888888765211
Q ss_pred CCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc---cccccceEEeecCc-ccchHHHHHh
Q 038902 657 NPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW---EIASTRSMHLKNIS-TPLADWVKLL 732 (997)
Q Consensus 657 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~ 732 (997)
... ..+++|+.|++++|.+..++.. .++|+.|++++|.... .+++|+.|++++|. ..+| ..
T Consensus 175 ----~l~---~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 175 ----SLP---MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp ----CCC---CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CC
T ss_pred ----CCc---ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CC
Confidence 111 3457888888888877665542 3677777777766521 23445555555554 3333 22
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeeccc
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCY 795 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 795 (997)
+++|+.|+|+++ .+..++. .+++|+.|+|++|.++.+ |. .+..+++|+.|++++|+
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~-~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRL-PE-SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSC-CG-GGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcC-CH-HHhhccccCEEEecCCC
Confidence 355555555332 3444432 345566666666555544 22 24455555666555554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.2e-18 Score=185.71 Aligned_cols=188 Identities=21% Similarity=0.301 Sum_probs=130.4
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCC-
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTH- 577 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~- 577 (997)
+.++..++.+..+|.. ..++|+.|++++|.+..+++..|..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 5667777777777753 356888888888888888877788888888888888888766 6678888888888888886
Q ss_pred ccCC-C-cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 578 LEKA-P-LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 578 l~~l-p-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
++.+ | .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|++|+++++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc-----
Confidence 7776 3 677888888888888888776 4557778888888888887 55666554667777777777665211
Q ss_pred CCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEE
Q 038902 655 TPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRF 699 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 699 (997)
......+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 167 -----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 167 -----SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred -----ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 0111224556666777666666554443333333333333
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=5.4e-18 Score=200.25 Aligned_cols=256 Identities=19% Similarity=0.135 Sum_probs=193.0
Q ss_pred CCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCC
Q 038902 519 PQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGS 598 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~ 598 (997)
.++++|++++|.+..+|.... ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 468999999999998876543 799999999999999987 57899999999999999987 7899999999999
Q ss_pred cccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEE
Q 038902 599 SIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIH 678 (997)
Q Consensus 599 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 678 (997)
++..+|. .+++|+.|++++|. +..+|.. +++|++|++++|... .++ ..+++|+.|+++
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~----~l~----------~~~~~L~~L~L~ 169 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA----SLP----------ALPSELCKLWAY 169 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS----CCC----------CCCTTCCEEECC
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC----CcC----------CccCCCCEEECC
Confidence 9999987 67899999999997 6778763 589999999886311 110 134689999999
Q ss_pred eccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccccccccCC
Q 038902 679 INSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGL 758 (997)
Q Consensus 679 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l 758 (997)
+|.+..++ ..+++|+.|++++|.+. .+|. .+++|+.|++.++ .+..++. .+
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~----------------~l~~----~~~~L~~L~L~~N-~l~~l~~----~~ 220 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLA----------------SLPT----LPSELYKLWAYNN-RLTSLPA----LP 220 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCS----------------CCCC----CCTTCCEEECCSS-CCSSCCC----CC
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCC----------------CCCC----ccchhhEEECcCC-cccccCC----CC
Confidence 99887776 23477888888776651 1221 1367777777443 3554442 24
Q ss_pred CCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCC
Q 038902 759 TALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHS 838 (997)
Q Consensus 759 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 838 (997)
++|+.|++++|.++.+ | ..+++|+.|++++|. ++.++ . .+++|+.|++++| .++.++ ..
T Consensus 221 ~~L~~L~Ls~N~L~~l-p----~~l~~L~~L~Ls~N~-L~~lp---------~--~~~~L~~L~Ls~N-~L~~lp---~~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTSL-P----VLPSELKELMVSGNR-LTSLP---------M--LPSGLLSLSVYRN-QLTRLP---ES 279 (622)
T ss_dssp TTCCEEECCSSCCSCC-C----CCCTTCCEEECCSSC-CSCCC---------C--CCTTCCEEECCSS-CCCSCC---GG
T ss_pred CCCCEEEccCCccCcC-C----CCCCcCcEEECCCCC-CCcCC---------c--ccccCcEEeCCCC-CCCcCC---HH
Confidence 6788888888887775 3 256888888888873 44443 1 5778999999886 455553 23
Q ss_pred cccCCCccEEEEeecC
Q 038902 839 KAHVENLEIMRVKECG 854 (997)
Q Consensus 839 ~~~l~~L~~L~l~~C~ 854 (997)
+..+++|+.|++++++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 5678899999998864
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1e-18 Score=188.28 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=177.6
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcc-cCCC-Ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTN-ISTL-PGSIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~l-p~~l~~l 565 (997)
.+|.....++++|+++++.+..++.. ..+++|++|++++|.+..+.+..|..+++|++|++++|. ++.+ |..+..+
T Consensus 25 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 55655578999999999999888753 389999999999999999888889999999999999997 8877 6788999
Q ss_pred ccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEE
Q 038902 566 VKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 642 (997)
++|++|++++|.++.++ .+.++++|++|++++|.+..+|.. +..+++|++|++++|. +..++...+..+++|++|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEE
Confidence 99999999999999885 689999999999999999988754 8899999999999997 6777776688999999999
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
++++.. .......+..+++|+.|++++|.+..++...+..+++|+.|++++|..
T Consensus 184 l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 184 LHQNRV----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCSSCC----------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCCCcc----------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 988631 122245678899999999999998888877677789999999988765
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=196.55 Aligned_cols=230 Identities=21% Similarity=0.250 Sum_probs=189.0
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 566 (997)
.+|.....+++.|++++|.+..++.. ..+++|+.|++++|.+..+++..|.++++|++|++++|.++.+|. .+..++
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 56666678899999999999888753 389999999999999999999999999999999999999998875 689999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCC-cccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEE
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGS-SIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 642 (997)
+|++|++++|.++.++ .+.++++|++|++++| .+..++. .+..+++|++|++++|. +..+|. +..+++|++|+
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~ 213 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELD 213 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEE
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEE
Confidence 9999999999999887 7899999999999995 5666764 68899999999999997 778886 78999999999
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCc
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNIS 722 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~ 722 (997)
+++|.. .......+..+++|+.|++++|.+..++...+..+++|+.|++++|
T Consensus 214 Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N------------------ 265 (440)
T 3zyj_A 214 LSGNHL----------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN------------------ 265 (440)
T ss_dssp CTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS------------------
T ss_pred CCCCcc----------CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC------------------
Confidence 988731 1222356788999999999999988877766665555555554433
Q ss_pred ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCcc
Q 038902 723 TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQR 773 (997)
Q Consensus 723 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~ 773 (997)
.+..++...|..+++|+.|+|++|++..
T Consensus 266 -----------------------~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 266 -----------------------NLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -----------------------CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -----------------------CCCccChhHhccccCCCEEEcCCCCccC
Confidence 2344444556778889999999998544
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.6e-18 Score=196.98 Aligned_cols=233 Identities=22% Similarity=0.282 Sum_probs=189.8
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~ 566 (997)
.+|.....+++.|++++|.+..++.. ..+++|+.|++++|.+..+++..|.++++|++|++++|.++.+|. .+..++
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred ccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 55655568999999999998887553 389999999999999999998899999999999999999998875 488899
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCC-cccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEE
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGS-SIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELY 642 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 642 (997)
+|++|++++|.++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|. +..+|. +..+++|++|+
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~ 224 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELE 224 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEE
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEE
Confidence 9999999999999987 7899999999999995 6777764 58899999999999998 677876 78999999999
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCc
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNIS 722 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~ 722 (997)
+++|. ........+..+++|+.|++++|.+..+....+..+++|+.|++++|.
T Consensus 225 Ls~N~----------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------- 277 (452)
T 3zyi_A 225 MSGNH----------FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN----------------- 277 (452)
T ss_dssp CTTSC----------CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----------------
T ss_pred CcCCc----------CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-----------------
Confidence 98863 222334568899999999999999887777666655566555554432
Q ss_pred ccchHHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccc
Q 038902 723 TPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFR 776 (997)
Q Consensus 723 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~ 776 (997)
+..++...|..+++|+.|+|++|++.....
T Consensus 278 ------------------------l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 278 ------------------------LSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ------------------------CSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ------------------------CCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 334444556678889999999998554433
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.1e-19 Score=210.96 Aligned_cols=355 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred cCceEEEcccCCCcCCCCC---CCCCCccEEEccCCCCCCC----ChhHhhcCccccEEEecCcccCCC-Cccc-cccc-
Q 038902 497 KEYKKISLMDSGINKLPDE---PMCPQLLTLFLQHNAFDKI----PPGFFEHMREINFLDLSYTNISTL-PGSI-ECLV- 566 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~l-p~~l-~~l~- 566 (997)
.++++|+++++.+...+.. ..+++|++|++++|.+... .+..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678899988876544321 2688999999999987643 245567789999999999988742 2222 3344
Q ss_pred ---cCCEEEcCCCCccC-----CC-cccccCcccEEEecCCccccc-Cccc-----cCCCCCcEEeccCCccCCC----C
Q 038902 567 ---KLRSLRAENTHLEK-----AP-LKKEFKELVILILRGSSIREL-PKGL-----ERWINLKLLDLSNNIFLQG----I 627 (997)
Q Consensus 567 ---~L~~L~L~~~~l~~-----lp-~~~~l~~L~~L~L~~~~l~~l-p~~~-----~~l~~L~~L~l~~~~~~~~----~ 627 (997)
+|++|++++|.++. ++ .+..+++|++|++++|.+... +..+ ...++|++|++++|..... +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 35 788899999999999987632 2222 2356899999999973322 2
Q ss_pred ChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhh-----CCCCCCEEEEEeccccccc----cccCCCCCCccE
Q 038902 628 PPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVA-----SLSRLTVLYIHINSTEVLS----KQFDGPWGNLKR 698 (997)
Q Consensus 628 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~ 698 (997)
+.. +..+++|++|++++|... ...+..+. ..++|+.|++++|.+.... ...+..+++|+.
T Consensus 163 ~~~-l~~~~~L~~L~L~~n~i~----------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 163 ASV-LRAKPDFKELTVSNNDIN----------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHH-HHHCTTCCEEECCSSBCH----------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred HHH-HhhCCCCCEEECcCCCcc----------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 332 677899999999876311 11112222 3669999999988765432 122234577777
Q ss_pred EEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccc----cccccCCCCccEEEEeccCCccc
Q 038902 699 FRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIG----AIEVQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 699 L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~----~~~~~~l~~L~~L~L~~~~l~~~ 774 (997)
|++++|...... + ..+...+...+++|+.|++++| .++..+ ...+..+++|++|++++|.+.+.
T Consensus 232 L~Ls~n~l~~~~--~---------~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 232 LALGSNKLGDVG--M---------AELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp EECCSSBCHHHH--H---------HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred EeccCCcCChHH--H---------HHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 777766541000 0 0011111112467777777554 444422 12344577788888888876554
Q ss_pred cchhhHHH----hcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccCCC---cccCCCccE
Q 038902 775 FRSSFYAR----ARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGNHS---KAHVENLEI 847 (997)
Q Consensus 775 ~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~l~~L~~ 847 (997)
.+..+... .++|++|++++|.....-. ...+.....+++|+.|+++++. +.......+. ....++|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACC----SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHH----HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEE
Confidence 22222222 2588888888775322100 0011234566888888888863 3332100000 012578999
Q ss_pred EEEeecCCCCcc---CChHHHHhhcCCceEeecCCc
Q 038902 848 MRVKECGKLKNI---FSKTLALKLGKLEQLSFQKCD 880 (997)
Q Consensus 848 L~l~~C~~L~~l---~~~~~~~~l~~L~~L~l~~c~ 880 (997)
|++++| .+++. ..+..+..+++|++|++++|+
T Consensus 375 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 375 LWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999887 45531 014556678899999999875
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-18 Score=189.82 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=128.8
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCCCCccCC---C-cccccCcccEEEec
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAENTHLEKA---P-LKKEFKELVILILR 596 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l~~l---p-~~~~l~~L~~L~L~ 596 (997)
+.++++++.+..+|... .++|++|++++|.++.+|.. +.++++|++|++++|.++.+ + .+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888888888643 36899999999999988865 68999999999999988765 4 67788999999999
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCCh-HHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPP-NIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVL 675 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 675 (997)
+|.+..+|..+..+++|++|++++|. +..++. ..+..+++|++|+++++.. .......+..+++|+.|
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHT----------RVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCC----------EECSTTTTTTCTTCCEE
T ss_pred CCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcC----------CccchhhcccCcCCCEE
Confidence 99999999889999999999999997 455543 3378889999999977631 11222346778888888
Q ss_pred EEEeccccc-cccccCCCCCCccEEEEEec
Q 038902 676 YIHINSTEV-LSKQFDGPWGNLKRFRVQVN 704 (997)
Q Consensus 676 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 704 (997)
++++|.+.. ..+..+..+++|+.|++++|
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 888887654 33334444555555555443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.6e-19 Score=197.62 Aligned_cols=170 Identities=19% Similarity=0.151 Sum_probs=123.0
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEec
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILR 596 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~ 596 (997)
.+++|+.|++++|.+..+++..|..+++|++|++++|.++..+. +..+++|++|++++|.++.++ ..++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 46788999999998888888888889999999999998876654 888889999999998877665 33788899999
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhh-hCCCCCCEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEV-ASLSRLTVL 675 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 675 (997)
+|.+..++.. .+++|++|++++|. +..++...++.+++|++|++++|... ...+..+ ..+++|+.|
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID----------TVNFAELAASSDTLEHL 174 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC----------EEEGGGGGGGTTTCCEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC----------cccHHHHhhccCcCCEE
Confidence 9888877543 47888999998887 55565544677888888888776311 1112233 467788888
Q ss_pred EEEeccccccccccCCCCCCccEEEEEecC
Q 038902 676 YIHINSTEVLSKQFDGPWGNLKRFRVQVND 705 (997)
Q Consensus 676 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (997)
++++|.+..++.... +++|+.|++++|.
T Consensus 175 ~L~~N~l~~~~~~~~--l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNK 202 (317)
T ss_dssp ECTTSCCCEEECCCC--CTTCCEEECCSSC
T ss_pred ECCCCcCcccccccc--cccCCEEECCCCc
Confidence 888887665543322 3555555554443
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.1e-19 Score=196.61 Aligned_cols=264 Identities=16% Similarity=0.139 Sum_probs=178.2
Q ss_pred ccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCc
Q 038902 521 LLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSS 599 (997)
Q Consensus 521 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~ 599 (997)
++.++++.+.+...+...+..+++|++|++++|.++.++ ..+..+++|++|++++|.++..+.+..+++|++|++++|.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 455566666666666667777889999999999999775 6789999999999999999887779999999999999999
Q ss_pred ccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEe
Q 038902 600 IRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHI 679 (997)
Q Consensus 600 l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 679 (997)
+..+| ..++|++|++++|. +..++. ..+++|++|+++++... ......++.+++|+.|++++
T Consensus 92 l~~l~----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT----------MLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC----------SGGGBCTGGGSSEEEEECTT
T ss_pred ccccc----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC----------CccchhhhccCCCCEEECCC
Confidence 88775 34899999999997 555553 34788999999876321 11112456778899999998
Q ss_pred ccccccccccC-CCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccccccccCC
Q 038902 680 NSTEVLSKQFD-GPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGL 758 (997)
Q Consensus 680 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l 758 (997)
|.+...+...+ ..+++|+.|++++|.... +|... .+++|+.|+|+++ .+..++.. |..+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~~~~--~l~~L~~L~Ls~N-~l~~l~~~-~~~l 213 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYD----------------VKGQV--VFAKLKTLDLSSN-KLAFMGPE-FQSA 213 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCE----------------EECCC--CCTTCCEEECCSS-CCCEECGG-GGGG
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCcc----------------ccccc--ccccCCEEECCCC-cCCcchhh-hccc
Confidence 88776554333 356777877777665411 00000 1356666666332 34444432 5556
Q ss_pred CCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcce
Q 038902 759 TALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLT 831 (997)
Q Consensus 759 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 831 (997)
++|+.|++++|.++.+ |.. +..+++|+.|++++|+..... .+.....+++|+.|++.+++.++.
T Consensus 214 ~~L~~L~L~~N~l~~l-~~~-~~~l~~L~~L~l~~N~~~~~~-------~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 214 AGVTWISLRNNKLVLI-EKA-LRFSQNLEHFDLRGNGFHCGT-------LRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TTCSEEECTTSCCCEE-CTT-CCCCTTCCEEECTTCCCBHHH-------HHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcccEEECcCCcccch-hhH-hhcCCCCCEEEccCCCccCcC-------HHHHHhccccceEEECCCchhccC
Confidence 6777777777776654 322 445667777777666543111 112445667777777776555443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=7e-17 Score=172.18 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=168.0
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCC
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAEN 575 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~ 575 (997)
...+.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45678999999988888744 37899999999999999888889999999999999999988765 47899999999999
Q ss_pred CCccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccc
Q 038902 576 THLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 576 ~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
|.++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|...++.+++|++|+++++...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---
Confidence 9999987 67899999999999999998864 47899999999999997 67888776889999999999876311
Q ss_pred ccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 653 EETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
......+..+++|+.|++++|.+..++...+..+++|+.|++.+|..
T Consensus 171 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 171 -------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 11123467889999999999998888887777788999998888764
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.1e-17 Score=177.00 Aligned_cols=205 Identities=22% Similarity=0.200 Sum_probs=143.9
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~ 566 (997)
.+|.....+++.|++++|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.++.++ ..+..++
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 34444456788888888777776642 26788888888888877777777778888888888888877654 5677788
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCcccc--cCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCc---
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRE--LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLE--- 639 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--- 639 (997)
+|++|++++|.++.++ .++++++|++|++++|.+.. +|..+..+++|++|++++|. +..++...+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccc
Confidence 8888888888877765 57788888888888887775 57778888888888888876 4555544455555555
Q ss_pred -EEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 640 -ELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 640 -~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
+|+++++... ..........+|+.|++++|.+..++...+..+++|+.|++++|..
T Consensus 180 l~L~ls~n~l~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 180 LSLDLSLNPMN-----------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEEECCSSCCC-----------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eeeecCCCccc-----------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 6777665211 1111122233788888888877777776666677777777777665
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.5e-16 Score=172.84 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=167.2
Q ss_pred hhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEc
Q 038902 494 EDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRA 573 (997)
Q Consensus 494 ~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L 573 (997)
..+.+++.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3478999999999999998876689999999999999988877 889999999999999999876 6899999999999
Q ss_pred CCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 574 ENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 574 ~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
++|.++.++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. ++.+++|++|++++|..
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l----- 185 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKI----- 185 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC-----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCcc-----
Confidence 99999999889999999999999999998876 8899999999999997 667776 78999999999988631
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
..+..+..+++|+.|++++|.+...++ +..+++|+.|++++|..
T Consensus 186 -------~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 -------SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -------CCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred -------CcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 112237889999999999999887764 56679999999988765
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=6e-18 Score=196.09 Aligned_cols=170 Identities=19% Similarity=0.156 Sum_probs=119.2
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEec
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILR 596 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~ 596 (997)
.+++|++|++++|.+..+++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE---CTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC---CCCcCEEECc
Confidence 45678888888888888887778888888888888888876554 7888888888888888776652 2788888888
Q ss_pred CCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhh-CCCCCCEE
Q 038902 597 GSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVA-SLSRLTVL 675 (997)
Q Consensus 597 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 675 (997)
+|.+..+|. ..+++|+.|++++|. +..+++..++.+++|+.|++++|.. ....+..+. .+++|+.|
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEI----------DTVNFAELAASSDTLEHL 174 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCC----------CEEEGGGGGGGTTTCCEE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCC----------CCcChHHHhhhCCcccEE
Confidence 888877754 356788888888887 4444443367788888888876531 111233343 67788888
Q ss_pred EEEeccccccccccCCCCCCccEEEEEecC
Q 038902 676 YIHINSTEVLSKQFDGPWGNLKRFRVQVND 705 (997)
Q Consensus 676 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (997)
++++|.+..++... .+++|+.|++++|.
T Consensus 175 ~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 175 NLQYNFIYDVKGQV--VFAKLKTLDLSSNK 202 (487)
T ss_dssp ECTTSCCCEEECCC--CCTTCCEEECCSSC
T ss_pred ecCCCccccccccc--cCCCCCEEECCCCC
Confidence 88888766554332 24555555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.1e-17 Score=178.66 Aligned_cols=147 Identities=27% Similarity=0.440 Sum_probs=68.4
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAE 574 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~ 574 (997)
+.+++.|.+.++.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 4455555555555544444334555555555555444432 24445555555555555544432 23445555555555
Q ss_pred CCCccCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeec
Q 038902 575 NTHLEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGN 645 (997)
Q Consensus 575 ~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 645 (997)
+|.++.++ .++++++|++|++++|.+..+|.. +..+++|++|++++|. +..++...++.+++|++|++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 55544443 244455555555555544444322 3444555555555444 3333333234444444444433
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=2.3e-16 Score=168.88 Aligned_cols=223 Identities=18% Similarity=0.219 Sum_probs=158.1
Q ss_pred EEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCcc
Q 038902 501 KISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLE 579 (997)
Q Consensus 501 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~ 579 (997)
.+...+..+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.++. .+..+++|++|++++|.++
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3444555666777643 3679999999999998888788899999999999999987754 6889999999999999998
Q ss_pred CCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCC-CCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 580 KAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQ-GIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 580 ~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
.++ .+.++++|++|++++|++..++. .+..+++|++|++++|.... .+|.. ++.+++|++|++++|....
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~----- 163 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS----- 163 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE-----
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCc-----
Confidence 875 68899999999999999888754 68899999999999987433 25655 7888999999987763110
Q ss_pred CCCCCCChHhhhCCCCCC-EEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhc
Q 038902 656 PNPKSAAFKEVASLSRLT-VLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLE 734 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 734 (997)
.....+..+..++.|. .|++++|.+..++...+.. .
T Consensus 164 --~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-----------------------------------------~ 200 (276)
T 2z62_A 164 --IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-----------------------------------------I 200 (276)
T ss_dssp --ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-----------------------------------------C
T ss_pred --CCHHHhhhhhhccccceeeecCCCcccccCccccCC-----------------------------------------C
Confidence 1112233444454444 7777777766555443321 1
Q ss_pred cccceecCCCCCCcccccccccCCCCccEEEEeccCCccc
Q 038902 735 KTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRI 774 (997)
Q Consensus 735 ~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~ 774 (997)
+|+.|+|+++ .+..++...|..+++|+.|++++|++...
T Consensus 201 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 201 RLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccEEECCCC-ceeecCHhHhcccccccEEEccCCccccc
Confidence 3333344222 24444444566778888888888886543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.2e-16 Score=169.79 Aligned_cols=197 Identities=20% Similarity=0.226 Sum_probs=165.7
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
..+++.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++|.++.+|.. +.+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 457889999999999988754 47899999999999998888899999999999999999987764 7899999999999
Q ss_pred CCccCCC-cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 576 THLEKAP-LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 576 ~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
|.++.+| .+..+++|++|++++|++..+| ..+..+++|++|++++|. +..+|.+.+..+++|+.|+++++...
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~---- 161 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT---- 161 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS----
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC----
Confidence 9999998 7889999999999999999887 568899999999999998 67888877889999999999876311
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
.-....+..+++|+.|++++|.+..++..++. .++|+.|.+.+|..
T Consensus 162 ------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNPW 207 (290)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCCB
T ss_pred ------ccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEEeCCCCc
Confidence 11112357789999999999998888776554 56788888877654
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=5.8e-17 Score=169.48 Aligned_cols=131 Identities=23% Similarity=0.373 Sum_probs=84.1
Q ss_pred cCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcc-cCCCCc-cccccccCCEEEcCC-CCccCCC
Q 038902 506 DSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTN-ISTLPG-SIECLVKLRSLRAEN-THLEKAP 582 (997)
Q Consensus 506 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~lp~-~l~~l~~L~~L~L~~-~~l~~lp 582 (997)
+..+..+|. -.++|+.|++++|.+..+++..|.++++|++|++++|. ++.+|. .+..+++|++|++++ |.++.++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 333566665 34477777777777777777667777777777777775 766654 566777777777776 6676665
Q ss_pred --cccccCcccEEEecCCcccccCccccCCCCCc---EEeccCCccCCCCChHHhhcCCCCc
Q 038902 583 --LKKEFKELVILILRGSSIRELPKGLERWINLK---LLDLSNNIFLQGIPPNIISKLCQLE 639 (997)
Q Consensus 583 --~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~ 639 (997)
.+.++++|++|++++|.+..+|. +..+++|+ +|++++|..+..+|...+..+++|+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 56667777777777777666665 56666665 6666666224444443333344444
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=6.8e-17 Score=175.59 Aligned_cols=151 Identities=24% Similarity=0.273 Sum_probs=112.2
Q ss_pred CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEe
Q 038902 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILIL 595 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L 595 (997)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 36778888888888877765 36778888888888888887776 8888888888888888888888888888888888
Q ss_pred cCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEE
Q 038902 596 RGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVL 675 (997)
Q Consensus 596 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 675 (997)
++|.+..+|. +..+++|++|++++|. +..++. ++.+++|++|++++|.. . .+..+..+++|+.|
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l-----------~-~~~~l~~l~~L~~L 178 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQV-----------S-DLTPLANLSKLTTL 178 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCC-----------C-CCGGGTTCTTCCEE
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcC-----------C-CChhhcCCCCCCEE
Confidence 8888877764 7788888888888886 556655 67777888888766521 0 11225666677777
Q ss_pred EEEecccccc
Q 038902 676 YIHINSTEVL 685 (997)
Q Consensus 676 ~l~~~~~~~~ 685 (997)
++++|.+..+
T Consensus 179 ~l~~n~l~~~ 188 (308)
T 1h6u_A 179 KADDNKISDI 188 (308)
T ss_dssp ECCSSCCCCC
T ss_pred ECCCCccCcC
Confidence 7766655443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.2e-16 Score=165.39 Aligned_cols=156 Identities=25% Similarity=0.353 Sum_probs=101.8
Q ss_pred CCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCCC--cccccCcccEEEe
Q 038902 519 PQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKAP--LKKEFKELVILIL 595 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L 595 (997)
...++++++++.+..+|... .++|+.|++++|.++.+|. .+..+++|++|++++|.++.+| .+.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677888888777766533 2567888888888877654 6777888888888888877776 4577788888888
Q ss_pred cCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCE
Q 038902 596 RGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTV 674 (997)
Q Consensus 596 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 674 (997)
++|.+..+|. .+..+++|++|++++|. +..++...++.+++|++|+++++... ......+..+++|+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ----------SLPKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCC----------ccCHhHccCCcccce
Confidence 8887777754 35677788888887776 45555544566677777766654210 001112445555666
Q ss_pred EEEEeccccccccc
Q 038902 675 LYIHINSTEVLSKQ 688 (997)
Q Consensus 675 L~l~~~~~~~~~~~ 688 (997)
|++++|.+..++..
T Consensus 162 L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 162 LRLYNNQLKRVPEG 175 (270)
T ss_dssp EECCSSCCSCCCTT
T ss_pred eEecCCcCcEeChh
Confidence 66655554444433
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=5.1e-18 Score=185.15 Aligned_cols=180 Identities=17% Similarity=0.085 Sum_probs=103.7
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCC-ChhHhh-------cCccccEEEecCcccC-CCCccc--ccc
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKI-PPGFFE-------HMREINFLDLSYTNIS-TLPGSI--ECL 565 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~i~-~lp~~l--~~l 565 (997)
.+++.+.+.+|.+ .+|... ...|+.|++++|.+... .+..+. ++++|++|++++|.++ .+|..+ +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHH-HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455555566665 445422 11266677777665321 122222 4677777777777776 556654 677
Q ss_pred ccCCEEEcCCCCccCCC-ccccc-----CcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCC--CChHH-hhcC
Q 038902 566 VKLRSLRAENTHLEKAP-LKKEF-----KELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQG--IPPNI-ISKL 635 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~lp-~~~~l-----~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~-l~~l 635 (997)
++|++|++++|.++.+| .++.+ ++|++|++++|.+..++ ..+..+++|++|++++|...+. ++... ++.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 77777777777777666 55555 67777777777777665 5667777777777777763322 12220 1566
Q ss_pred CCCcEEEeecCCCCcccccCCCCCCCCh-HhhhCCCCCCEEEEEeccccccc
Q 038902 636 CQLEELYIGNSFGNWELEETPNPKSAAF-KEVASLSRLTVLYIHINSTEVLS 686 (997)
Q Consensus 636 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 686 (997)
++|++|++++|.... . .... ..+..+++|+.|++++|.+....
T Consensus 201 ~~L~~L~L~~N~l~~-~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 201 PTLQVLALRNAGMET-P-------SGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTCCEEECTTSCCCC-H-------HHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCEEECCCCcCcc-h-------HHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 777777776652110 0 0111 12245667777777777655433
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=8.4e-16 Score=165.20 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=152.8
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCccCCCcccccCcccEEEe
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILIL 595 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L 595 (997)
.+++++.++++++.+..+|..+ .+++++|++++|.++.+ |..+..+++|++|++++|.++.++..+.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 6789999999999999888754 37899999999999976 5678999999999999999999886689999999999
Q ss_pred cCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEE
Q 038902 596 RGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVL 675 (997)
Q Consensus 596 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 675 (997)
++|.+..+|..+..+++|++|++++|. +..+|.+.+..+++|++|+++++... ......+..+++|+.|
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK----------TLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEE
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC----------ccChhhcccccCCCEE
Confidence 999999999999999999999999998 67787666899999999999886321 1112346788999999
Q ss_pred EEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 676 YIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 676 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
++++|.+..++...+..+++|+.|++++|..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 9999999999888888889999999888776
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=4.3e-16 Score=162.80 Aligned_cols=199 Identities=15% Similarity=0.231 Sum_probs=163.3
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCC-CCCCChhHhhcCccccEEEecC-cccCCCC-ccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNA-FDKIPPGFFEHMREINFLDLSY-TNISTLP-GSIEC 564 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~i~~lp-~~l~~ 564 (997)
.+|. ...+++.|++++|.+..++.. ..+++|++|++++|. +..+++..|.++++|++|++++ |.++.+| ..+..
T Consensus 25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 4555 556899999999999998873 389999999999997 9999988899999999999998 9999886 56889
Q ss_pred cccCCEEEcCCCCccCCCcccccCccc---EEEecCC-cccccCc-cccCCCCCc-EEeccCCccCCCCChHHhhcCCCC
Q 038902 565 LVKLRSLRAENTHLEKAPLKKEFKELV---ILILRGS-SIRELPK-GLERWINLK-LLDLSNNIFLQGIPPNIISKLCQL 638 (997)
Q Consensus 565 l~~L~~L~L~~~~l~~lp~~~~l~~L~---~L~L~~~-~l~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L 638 (997)
+++|++|++++|.++.+|.++.+++|+ +|++++| .+..+|. .+..+++|+ +|++++|. +..+|...+.. ++|
T Consensus 104 l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKL 181 (239)
T ss_dssp CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEE
T ss_pred CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCC
Confidence 999999999999999999888888888 9999999 9998875 488999999 99999998 56888775544 899
Q ss_pred cEEEeecCCCCcccccCCCCCCCChHhhhCC-CCCCEEEEEeccccccccccCCCCCCccEEEEEe
Q 038902 639 EELYIGNSFGNWELEETPNPKSAAFKEVASL-SRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQV 703 (997)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 703 (997)
++|+++++.....+ ....+..+ ++|+.|++++|.+..++.. .+++|+.|.+.+
T Consensus 182 ~~L~L~~n~~l~~i---------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 182 DAVYLNKNKYLTVI---------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp EEEECTTCTTCCEE---------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CEEEcCCCCCcccC---------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 99999876211111 12346677 8999999999988777665 346777776653
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.3e-16 Score=182.79 Aligned_cols=207 Identities=15% Similarity=0.108 Sum_probs=164.3
Q ss_pred hcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEc
Q 038902 496 LKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRA 573 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L 573 (997)
..+++.|++++|.+..++.. ..+++|++|++++|.+...++ +..+++|++|++++|.++.+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 34899999999999888743 389999999999999887665 7899999999999999987764 389999999
Q ss_pred CCCCccCCCcccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccc
Q 038902 574 ENTHLEKAPLKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWEL 652 (997)
Q Consensus 574 ~~~~l~~lp~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 652 (997)
++|.++.++. ..+++|++|++++|.+..+ |..++.+++|++|++++|......|..+.+.+++|++|++++|....
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-- 183 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--
Confidence 9999998763 2468999999999999977 56788999999999999985444555533489999999998874211
Q ss_pred ccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccc------cccccceEEeecCc
Q 038902 653 EETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYW------EIASTRSMHLKNIS 722 (997)
Q Consensus 653 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~L~~L~l~~~~ 722 (997)
+.....+++|+.|++++|.+..+++. +..+++|+.|++++|.... .+++|+.|+++++.
T Consensus 184 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 184 ----------VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ----------EECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred ----------ccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 12234689999999999998888776 4567889999988877621 33455555555554
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.3e-15 Score=168.91 Aligned_cols=237 Identities=15% Similarity=0.189 Sum_probs=128.9
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccC-CC--cccccCcccE-EEec
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEK-AP--LKKEFKELVI-LILR 596 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~-lp--~~~~l~~L~~-L~L~ 596 (997)
++++.+++.++.+|.++ .++++.|+|++|.|+.+|. .+.++++|++|+|++|.+.. +| .+.++++|.. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34445555555554432 2345555666665555553 35556666666666655432 33 4455555443 3444
Q ss_pred CCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCC-CCCCE
Q 038902 597 GSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASL-SRLTV 674 (997)
Q Consensus 597 ~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~ 674 (997)
+|++..+| ..+..+++|++|++++|. +..+|...+....++..|++.++.....+.. ..+..+ ..++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~---------~~f~~~~~~l~~ 158 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER---------NSFVGLSFESVI 158 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECT---------TSSTTSBSSCEE
T ss_pred CCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccc---------cchhhcchhhhh
Confidence 45566553 445566666666666665 4444432233334444444433211111000 011222 24556
Q ss_pred EEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccc
Q 038902 675 LYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIE 754 (997)
Q Consensus 675 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 754 (997)
|++++|.+..++...+. ..+|+.|.+.+++.+..++...
T Consensus 159 L~L~~N~i~~i~~~~f~-----------------------------------------~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFN-----------------------------------------GTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp EECCSSCCCEECTTSST-----------------------------------------TEEEEEEECTTCTTCCCCCTTT
T ss_pred hccccccccCCChhhcc-----------------------------------------ccchhHHhhccCCcccCCCHHH
Confidence 66666655555443322 2456666776666777777777
Q ss_pred ccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCC
Q 038902 755 VQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEG 825 (997)
Q Consensus 755 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 825 (997)
|..+++|+.|+|++|.++.+.+. .+.+|+.|.+.++..++.+| ....+++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~~l~~lP---------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNLKKLP---------TLEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCTTCCCCC---------CTTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCCCcCccChh----hhccchHhhhccCCCcCcCC---------CchhCcChhhCcCCC
Confidence 88888999999999988877432 35566677666666666665 344566666666654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=5.2e-15 Score=155.73 Aligned_cols=173 Identities=25% Similarity=0.406 Sum_probs=124.2
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~ 576 (997)
..+.++++++.+..+|.... ++++.|++++|.+..+++..|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45677888888888876443 68888888888888888777888888888888888888664 45678888888888888
Q ss_pred CccCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccc
Q 038902 577 HLEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELE 653 (997)
Q Consensus 577 ~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 653 (997)
.++.+| .+..+++|++|++++|++..+|.. +..+++|++|++++|. +..++...++.+++|++|++++|...
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~---- 168 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ---- 168 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS----
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC----
Confidence 888776 567888888888888888877654 5678888888888886 56666654666777777777654210
Q ss_pred cCCCCCCCChHhhhCCCCCCEEEEEeccc
Q 038902 654 ETPNPKSAAFKEVASLSRLTVLYIHINST 682 (997)
Q Consensus 654 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 682 (997)
......+..+++|+.|++++|.+
T Consensus 169 ------~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 ------SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ------ccCHHHHhCCCCCCEEEeeCCce
Confidence 11112344555566666555543
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.3e-15 Score=163.95 Aligned_cols=171 Identities=24% Similarity=0.386 Sum_probs=111.3
Q ss_pred hhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 495 DLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 495 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
.+.+++.|+++++.+..++....+++|++|++++|.+..+++ +..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 356677777777776666655566777777777777666555 5667777777777777766543 6667777777777
Q ss_pred CCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 575 NTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 575 ~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
+|.++.++.+..+++|++|++++|.+..+ ..+..+++|++|++++|. +..++. +..+++|++|++++|..
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i------ 190 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHI------ 190 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC------
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcC------
Confidence 77777666666777777777777766666 456667777777777765 445544 56667777777665421
Q ss_pred CCCCCCCChHhhhCCCCCCEEEEEeccccc
Q 038902 655 TPNPKSAAFKEVASLSRLTVLYIHINSTEV 684 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 684 (997)
..+..+..+++|+.|++++|.+..
T Consensus 191 ------~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 ------SDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ------CBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ------CCChhhccCCCCCEEECcCCcccC
Confidence 011235666666666666665443
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=1.2e-14 Score=165.64 Aligned_cols=304 Identities=14% Similarity=0.115 Sum_probs=184.3
Q ss_pred ccccccHHHHHHHHHHh-c----c--CCceEEEE--EcCCCCcHHHHHHHHHHHHhhh---CCCce--EEEEEccCCCHH
Q 038902 140 SDLTHSSKALNSIMKLL-K----D--DKVNIIGL--QGPGGIGKSTLMEQLAKQIDTI---APHDK--AHVIVAESSDLR 205 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~~~~~~~~~---~~f~~--~wv~v~~~~~~~ 205 (997)
..++||+.+++++.+++ . + ...+.+.| +|++|+||||||+++++..... ..++. +|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 47999999999999888 3 2 24566777 9999999999999999887542 12333 788877778899
Q ss_pred HHHHHHHHHhCCCCc--hhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--------ccccccccCC-C--C--CceE
Q 038902 206 RIQDKIAELLKFKIE--EEDELQRRATLAKRLRERTKKVLIILDDVREKIN--------LAVSGIPYGE-E--R--KRCK 270 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--------~~~l~~~~~~-~--~--~gs~ 270 (997)
.+...++.+++...+ ..+.......+.+.+...+++++||+||++.... +..+...+.. . + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999976533 2233445566666665435899999999987432 2222111111 1 2 4556
Q ss_pred EEEeeCChhhhhcC--------C--CeeEEcCCCCHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHhC------CchhH
Q 038902 271 VIVTSRRLDVCSKM--------S--DVTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKACG------SLPNA 332 (997)
Q Consensus 271 iivTtr~~~v~~~~--------~--~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~i~~~~~------glPla 332 (997)
||+||+...+...+ . ...+.+++++.++++++|..++. ..+..-..+....|++.++ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88888765432111 1 13499999999999999976643 1111223457888999999 99976
Q ss_pred HHHHHHH-Hc-----CCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccCC-
Q 038902 333 IAIVAGA-LR-----GKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLFP- 405 (997)
Q Consensus 333 i~~~~~~-l~-----~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp- 405 (997)
+..+... .. +.... +.+.+..++.. .. . ...+.-++..||+..+.++..++.+.
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i-----~~~~v~~~~~~----~~--------~--~~~~~~~l~~l~~~~~~~l~aia~l~~ 322 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSL-----SEDLVRKAVSE----NE--------A--ASIQTHELEALSIHELIILRLIAEATL 322 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSC-----CHHHHHHHHHH----C----------------CCSSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHH----Hh--------c--cchHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5554432 11 11110 01233333322 10 0 22355577889999999998888653
Q ss_pred -CCCccchhhHHHHhhcc--cccc-ccccHHHHHHHHHHHHHHHHhcccccccc----CCCeEEecchh
Q 038902 406 -AYRSVPIEDFVMHGLVD--RLFR-DVDSMGGVLNKMQSIVEDLRNRKILSYRE----GEGTYRIHDNT 466 (997)
Q Consensus 406 -~~~~i~~~~li~~w~a~--g~i~-~~~~~~~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~mHdli 466 (997)
.+..++..++...+... .... ...+.. ....++++|.+.+++.... ..++|++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 323 GGMEWINAGLLRQRYEDASLTMYNVKPRGYT----QYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp TTCSSBCHHHHHHHHHHHHHHHSCCCCCCHH----HHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 33456666655544211 1111 001112 2335799999999996432 23456666554
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=6.6e-15 Score=158.38 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=155.8
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~ 577 (997)
++.++.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 333334444444444333478999999999999888754 7889999999999999998877 9999999999999999
Q ss_pred ccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCC
Q 038902 578 LEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPN 657 (997)
Q Consensus 578 l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 657 (997)
++.+|.+..+++|++|++++|++..+ ..+..+++|++|++++|. +..++. ++.+++|++|++++|..
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l--------- 168 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQI--------- 168 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCC---------
T ss_pred CCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcc---------
Confidence 99999999999999999999999987 468899999999999998 566643 89999999999988631
Q ss_pred CCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 658 PKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 658 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
... ..+..+++|+.|++++|.+..++. +..+++|+.|++++|..
T Consensus 169 --~~~-~~l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 169 --SDI-VPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp --CCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEE
T ss_pred --ccc-hhhcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcc
Confidence 111 228899999999999999887754 56789999999999876
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1e-14 Score=155.40 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=169.2
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~ 577 (997)
++..+.+..+.+........+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc
Confidence 333344444444444333478899999999998877654 788999999999999998865 78899999999999999
Q ss_pred ccCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 578 LEKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 578 l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
++.++ .++++++|++|++++|++..+|.. +..+++|++|++++|. +..++...++.+++|++|++++|...
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 170 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ----- 170 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC-----
Confidence 99887 479999999999999999988654 7899999999999997 66777776789999999999887311
Q ss_pred CCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCc
Q 038902 655 TPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNIS 722 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~ 722 (997)
......++.+++|+.|++++|.+..+++..+..+++|+.|++.+|.....+++++.|.+..+.
T Consensus 171 -----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 171 -----SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233 (272)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred -----ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence 112234678899999999999998888887888999999999998876667777776665544
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=3.3e-16 Score=170.81 Aligned_cols=197 Identities=18% Similarity=0.157 Sum_probs=132.8
Q ss_pred cCceEEEcccCCCcC--CCCCC--------CCCCccEEEccCCCCCCCChhHh--hcCccccEEEecCcccCCCCccccc
Q 038902 497 KEYKKISLMDSGINK--LPDEP--------MCPQLLTLFLQHNAFDKIPPGFF--EHMREINFLDLSYTNISTLPGSIEC 564 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~i~~lp~~l~~ 564 (997)
..++.|+++++.+.. ++... .+++|++|++++|.+....+..+ ..+++|++|++++|.++.+|..++.
T Consensus 63 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 336666666655533 22222 47788888888888774433322 7788888888888888877777777
Q ss_pred c-----ccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccc---cCccc--cCCCCCcEEeccCCccCCC---CCh
Q 038902 565 L-----VKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRE---LPKGL--ERWINLKLLDLSNNIFLQG---IPP 629 (997)
Q Consensus 565 l-----~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~---lp~~~--~~l~~L~~L~l~~~~~~~~---~~~ 629 (997)
+ ++|++|++++|.++.++ .++++++|++|++++|++.. +|..+ ..+++|++|++++|. +.. ++.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH
Confidence 6 78888888888888775 77888888888888887543 34444 778888888888886 443 333
Q ss_pred HHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 630 NIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 630 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
..+..+++|++|++++|...... ....+..+++|+.|++++|.+..++..+. ++|+.|++++|..
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAA---------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRL 286 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSC---------CCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCcCCccc---------chhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCC
Confidence 44457788888888776321100 01224456788888888888776665443 6677776666654
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=7e-16 Score=170.52 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=82.1
Q ss_pred ccEEEccCCCCCCCChhHhhcC--ccccEEEecCcccCCCCccccccccCCEEEcCCCCccC--CC-cccccCcccEEEe
Q 038902 521 LLTLFLQHNAFDKIPPGFFEHM--REINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEK--AP-LKKEFKELVILIL 595 (997)
Q Consensus 521 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~--lp-~~~~l~~L~~L~L 595 (997)
++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.++. +| .+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 456666665543 4445555 77888888888777666566777888888888887654 44 6677777888888
Q ss_pred cCCccc-ccCccccCCCCCcEEeccCCccCCC--CChHHhhcCCCCcEEEeecC
Q 038902 596 RGSSIR-ELPKGLERWINLKLLDLSNNIFLQG--IPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 596 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 646 (997)
++|.+. ..|..+..+++|++|++++|..+.. ++.. ++.+++|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 777766 3456667777788888777743332 3332 566777777777665
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=8.3e-14 Score=154.76 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=173.4
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC------CHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS------DLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~------~~~~~~~~i~~~ 214 (997)
.|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++. +.+|+++.... +...+...+.+.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------PGILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------SEEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------CcEEEEeecccccccCCCHHHHHHHHHHH
Confidence 7999999999999988754 799999999999999999999764 25777765432 566666766665
Q ss_pred hCC-----------------CCc--hhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCC
Q 038902 215 LKF-----------------KIE--EEDELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIPYGEER 266 (997)
Q Consensus 215 l~~-----------------~~~--~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~ 266 (997)
+.. ..+ ..........+.+.... .++++||+||++.... +..+.... ...
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~ 162 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE-LGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSL 162 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH-HSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHC
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc-cCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-Hhc
Confidence 542 000 12233344445444443 1499999999987543 11121111 112
Q ss_pred CceEEEEeeCChhhhhc----------C-CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHH
Q 038902 267 KRCKVIVTSRRLDVCSK----------M-SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAI 333 (997)
Q Consensus 267 ~gs~iivTtr~~~v~~~----------~-~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai 333 (997)
++.++|+|++...+... . +. ..+++.+|+.+|+.+++.............+.+..|++.++|+|+++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 47789999887643111 1 11 48999999999999999876532211122457789999999999999
Q ss_pred HHHHHHHcCCCcccchhhhhhhh-HHHHHHHHHhccccccccCcccccceeeeecccc---hhhhhHHHhhhccCCCCCc
Q 038902 334 AIVAGALRGKLANESNESLVNIW-NDAVEEVIRESRDIKIEEIPKEEFLGITIGYNEL---KMVAKGCLQFCCLFPAYRS 409 (997)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~w-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~~~fp~~~~ 409 (997)
..++..+..... ...+ ....+. ... .+.-.+..+ ++..+..+..+|. . .
T Consensus 243 ~~~~~~~~~~~~-------~~~~~~~~~~~-~~~---------------~~~~~l~~l~~~~~~~~~~l~~la~--g--~ 295 (350)
T 2qen_A 243 VVFGVEYLRNGD-------FGRAMKRTLEV-AKG---------------LIMGELEELRRRSPRYVDILRAIAL--G--Y 295 (350)
T ss_dssp HHHHHHHHHHCC-------HHHHHHHHHHH-HHH---------------HHHHHHHHHHHHCHHHHHHHHHHHT--T--C
T ss_pred HHHHHHHhcccc-------HhHHHHHHHHH-HHH---------------HHHHHHHHHHhCChhHHHHHHHHHh--C--C
Confidence 999876532111 0111 111111 000 000011122 6788888888887 2 2
Q ss_pred cchhhHHHHhhccccccccccHHHHHHHHHHHHHHHHhccccccccCCCeEEe-cchhHHHH
Q 038902 410 VPIEDFVMHGLVDRLFRDVDSMGGVLNKMQSIVEDLRNRKILSYREGEGTYRI-HDNTRIVV 470 (997)
Q Consensus 410 i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~m-Hdli~~~~ 470 (997)
++...+....... . . ..+..+ ...+++.|++.+++...+ +.|.+ |++++.+.
T Consensus 296 ~~~~~l~~~~~~~-~-~-~~~~~~----~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVK-G-T-KIPEPR----LYALLENLKKMNWIVEED--NTYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHT-T-C-CCCHHH----HHHHHHHHHHTTSEEEET--TEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHH-h-C-CCCHHH----HHHHHHHHHhCCCEEecC--CEEEEecHHHHHHH
Confidence 4555554432111 0 0 011222 334799999999997653 56766 66776654
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.3e-14 Score=171.16 Aligned_cols=175 Identities=25% Similarity=0.379 Sum_probs=150.1
Q ss_pred hhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 495 DLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 495 ~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
.+.+++.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 467889999999999988876689999999999999888776 789999999999999998876 68999999999999
Q ss_pred CCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCccccc
Q 038902 575 NTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEE 654 (997)
Q Consensus 575 ~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 654 (997)
+|.++.++.+..+++|+.|+|++|.+..+ ..+..+++|+.|++++|. +..+++ +..+++|++|++++|..
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i------ 187 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHI------ 187 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC------
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCC------
Confidence 99999988999999999999999999888 678899999999999998 566655 78999999999988631
Q ss_pred CCCCCCCChHhhhCCCCCCEEEEEeccccccccc
Q 038902 655 TPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQ 688 (997)
Q Consensus 655 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 688 (997)
. .+..+..+++|+.|++++|.+...+..
T Consensus 188 -----~-~l~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 188 -----S-DLRALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp -----C-BCGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred -----C-CChHHccCCCCCEEEccCCcCcCCccc
Confidence 1 124588899999999999887655443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=3.6e-14 Score=149.30 Aligned_cols=156 Identities=24% Similarity=0.428 Sum_probs=139.2
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~ 566 (997)
.+|......++.|++++|.+..++.. ..+++|++|++++|.+..+++..|..+++|++|++++|.++.+| ..+..++
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC
Confidence 55655567899999999999888764 38999999999999999999988999999999999999999886 4578999
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEe
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYI 643 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 643 (997)
+|++|++++|.++.+| .+..+++|++|++++|++..+|. .+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 9999999999999987 47899999999999999999876 58899999999999998 66777766899999999999
Q ss_pred ecC
Q 038902 644 GNS 646 (997)
Q Consensus 644 ~~~ 646 (997)
+++
T Consensus 187 ~~N 189 (251)
T 3m19_A 187 FGN 189 (251)
T ss_dssp CSC
T ss_pred eCC
Confidence 876
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3.3e-14 Score=157.55 Aligned_cols=223 Identities=19% Similarity=0.192 Sum_probs=113.9
Q ss_pred cccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhh
Q 038902 589 ELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVA 667 (997)
Q Consensus 589 ~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 667 (997)
++++|+|++|+++.+|. .|.++++|++|++++|...+.+|.+.+.++++|.++...++-... .-....+.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~---------~l~~~~f~ 101 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---------YINPEAFQ 101 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC---------EECTTSBC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc---------ccCchhhh
Confidence 44555555555555543 245555555555555553344444434455554443322110000 00112245
Q ss_pred CCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCC
Q 038902 668 SLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDL 747 (997)
Q Consensus 668 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 747 (997)
.+++|+.|++++|.+..++...+....++..|.+. ++..+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~----------------------------------------~~~~i 141 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ----------------------------------------DNINI 141 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE----------------------------------------SCTTC
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhc----------------------------------------ccccc
Confidence 55666666666666555544333322333333332 22333
Q ss_pred cccccccccCCC-CccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCc
Q 038902 748 EDIGAIEVQGLT-ALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGL 826 (997)
Q Consensus 748 ~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 826 (997)
..++...|..++ .++.|++++|.++.+.+. .+ ...+|++|.+.++..++.++. .....+++|+.|+++++
T Consensus 142 ~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f-~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNS-AF-NGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT 212 (350)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCEECTT-SS-TTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS
T ss_pred ccccccchhhcchhhhhhccccccccCCChh-hc-cccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC
Confidence 333333343333 466677777766665332 22 245667777766666666541 12356677777777774
Q ss_pred cCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecC
Q 038902 827 PKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQK 878 (997)
Q Consensus 827 ~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 878 (997)
.++.++ ...+.+|+.|.+.+|.+++.+++ +..+++|+.+++.+
T Consensus 213 -~l~~lp-----~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 -RIHSLP-----SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp -CCCCCC-----SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred -CcCccC-----hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 455442 23466777777777777777632 45677777777755
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=6.5e-15 Score=173.81 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=159.0
Q ss_pred ChhhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEE
Q 038902 492 PQEDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSL 571 (997)
Q Consensus 492 ~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L 571 (997)
|...+..+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++|.+..+|. +..+++|++|
T Consensus 16 pd~~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 16 PDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp CSHHHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEE
T ss_pred CcHHHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEE
Confidence 333344555555555555555444578999999999999888763 7899999999999999998877 9999999999
Q ss_pred EcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcc
Q 038902 572 RAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWE 651 (997)
Q Consensus 572 ~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 651 (997)
+|++|.++.+|.+..+++|++|+|++|.+..+| .+..+++|+.|++++|. +..++. ++.+++|+.|++++|..
T Consensus 93 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l--- 165 (605)
T 1m9s_A 93 FLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQI--- 165 (605)
T ss_dssp ECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCC---
T ss_pred ECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcC---
Confidence 999999999999999999999999999998874 58899999999999998 566643 89999999999988631
Q ss_pred cccCCCCCCCChHhhhCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 652 LEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 652 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
... ..+..+++|+.|+|++|.+..++ .+..+++|+.|++++|.+
T Consensus 166 --------~~~-~~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 166 --------SDI-VPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --------CCC-GGGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEE
T ss_pred --------CCc-hhhccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcC
Confidence 111 22889999999999999987764 355678999999988765
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1e-14 Score=154.24 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=139.7
Q ss_pred CChhhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCE
Q 038902 491 WPQEDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRS 570 (997)
Q Consensus 491 ~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~ 570 (997)
+|...+.++..+.+.++.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.++.+|. +..+++|++
T Consensus 13 ~pd~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 13 FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp CCSHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred CCCHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 344445666777777777777775457889999999999888776 47789999999999999998877 889999999
Q ss_pred EEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCc
Q 038902 571 LRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNW 650 (997)
Q Consensus 571 L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 650 (997)
|++++|.++.+|.+.. ++|++|++++|.+..++ .+..+++|++|++++|. +..++. ++.+++|++|++++|...
T Consensus 90 L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp EECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC-
T ss_pred EECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc-
Confidence 9999999998885555 89999999999888875 58889999999999987 566663 788999999999776311
Q ss_pred ccccCCCCCCCChHhhhCCCCCCEEEEEecccccccc
Q 038902 651 ELEETPNPKSAAFKEVASLSRLTVLYIHINSTEVLSK 687 (997)
Q Consensus 651 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 687 (997)
.. ..+..+++|+.|++++|.+...+.
T Consensus 164 ----------~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 164 ----------NT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----------BC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ----------ch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 11 457788889999998887655443
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=7e-16 Score=173.90 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCCCccEEEccCCCCCCCChhH----hhcCccccEEEecCcccCC----CCccc-------cccccCCEEEcCCCCccC-
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGF----FEHMREINFLDLSYTNIST----LPGSI-------ECLVKLRSLRAENTHLEK- 580 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~i~~----lp~~l-------~~l~~L~~L~L~~~~l~~- 580 (997)
.+++|++|++++|.+....... +..+++|++|++++|.+.. +|..+ ..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 3455555666555544332222 3345555555555543331 22222 445555555555555544
Q ss_pred ----CC-cccccCcccEEEecCCccc
Q 038902 581 ----AP-LKKEFKELVILILRGSSIR 601 (997)
Q Consensus 581 ----lp-~~~~l~~L~~L~L~~~~l~ 601 (997)
+| .+.++++|++|++++|.+.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 23 4455555555555555443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=7.8e-15 Score=163.58 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=56.6
Q ss_pred EccCCCCCCCChhHhhcCccccEEEecCcccCCCC-----ccccccc-cCCEEEcCCCCccCCC--ccccc-----Cccc
Q 038902 525 FLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-----GSIECLV-KLRSLRAENTHLEKAP--LKKEF-----KELV 591 (997)
Q Consensus 525 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-----~~l~~l~-~L~~L~L~~~~l~~lp--~~~~l-----~~L~ 591 (997)
.++.|.+....+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.++... .+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 34444444444444444444555555555555433 3344444 5555555555555432 33332 5555
Q ss_pred EEEecCCcccccCcc-----ccCC-CCCcEEeccCCccCCCCChHHhh----c-CCCCcEEEeecC
Q 038902 592 ILILRGSSIRELPKG-----LERW-INLKLLDLSNNIFLQGIPPNIIS----K-LCQLEELYIGNS 646 (997)
Q Consensus 592 ~L~L~~~~l~~lp~~-----~~~l-~~L~~L~l~~~~~~~~~~~~~l~----~-l~~L~~L~l~~~ 646 (997)
+|++++|.+...+.. +..+ ++|++|++++|. ++..+...+. . .++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 555555555433211 2233 555555555555 3333322222 1 235555555544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.1e-14 Score=145.11 Aligned_cols=165 Identities=22% Similarity=0.375 Sum_probs=134.2
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l 578 (997)
+.+...++.+..+|... .++|+.|++++|.+..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45666677777777543 56899999999999888888888999999999999999988654 58899999999999999
Q ss_pred cCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccC
Q 038902 579 EKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEET 655 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 655 (997)
+.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|. +..++...+..+++|++|+++++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~------- 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW------- 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe-------
Confidence 9887 478999999999999999888754 6889999999999987 6677776678899999999977621
Q ss_pred CCCCCCChHhhhCCCCCCEEEEEecccc
Q 038902 656 PNPKSAAFKEVASLSRLTVLYIHINSTE 683 (997)
Q Consensus 656 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 683 (997)
.+.+++|+.|+++.|.+.
T Consensus 161 ----------~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 161 ----------DCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----------CCCTTTTHHHHHHHHHCT
T ss_pred ----------ecCCCCHHHHHHHHHhCC
Confidence 245667888887777654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=7.6e-14 Score=144.32 Aligned_cols=147 Identities=24% Similarity=0.395 Sum_probs=127.5
Q ss_pred CceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCC
Q 038902 498 EYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENT 576 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~ 576 (997)
..+.++..++.+..+|... .++|+.|++++|.+..+.+..|..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456888888888888744 4899999999999999988888999999999999999998875 4688999999999999
Q ss_pred CccCCC--cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 577 HLEKAP--LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 577 ~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
.++.++ .+..+++|++|++++|++..+|..+..+++|++|++++|. +..++...+..+++|+.|++.++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 999987 4789999999999999999999999999999999999997 67777666788888888888765
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=157.50 Aligned_cols=159 Identities=17% Similarity=0.067 Sum_probs=88.1
Q ss_pred CCccEEEccCCCCCCCChh---HhhcCccccEEEecCcccC-CCCccc--cccccCCEEEcCCCCccCC-C-----cccc
Q 038902 519 PQLLTLFLQHNAFDKIPPG---FFEHMREINFLDLSYTNIS-TLPGSI--ECLVKLRSLRAENTHLEKA-P-----LKKE 586 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~-~lp~~l--~~l~~L~~L~L~~~~l~~l-p-----~~~~ 586 (997)
..++.+.+.++.+...... .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + .+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3455666665543321110 0112455777777777766 345555 6677777777777766642 1 2345
Q ss_pred cCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCC--CC-hHHhhcCCCCcEEEeecCCCCcccccCCCCCCCC
Q 038902 587 FKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQG--IP-PNIISKLCQLEELYIGNSFGNWELEETPNPKSAA 662 (997)
Q Consensus 587 l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 662 (997)
+++|++|++++|.+..++ ..+..+++|++|++++|...+. ++ ...++.+++|++|++++|... .+ ...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-------~~~ 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP-------TGV 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH-------HHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch-------HHH
Confidence 677777777777776554 4566777777777777753221 11 111246677777777665210 00 000
Q ss_pred hH-hhhCCCCCCEEEEEecccccc
Q 038902 663 FK-EVASLSRLTVLYIHINSTEVL 685 (997)
Q Consensus 663 ~~-~l~~l~~L~~L~l~~~~~~~~ 685 (997)
.. -++.+++|+.|++++|.+...
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCcc
Confidence 11 135667777777777776655
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=7.4e-15 Score=162.24 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=94.9
Q ss_pred cCceEEEcccCCCcCCCCC-CCCCCccEEEccCCCCCCC-ChhHhhcCccccEEEecCcccC-CCCccccccccCCEEEc
Q 038902 497 KEYKKISLMDSGINKLPDE-PMCPQLLTLFLQHNAFDKI-PPGFFEHMREINFLDLSYTNIS-TLPGSIECLVKLRSLRA 573 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L 573 (997)
..++.+.+.++.+...+.. ..+++|+.|++++|.+... .+..+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4556666665554444332 2566666666666655432 3344556666666666666655 34555666666666666
Q ss_pred CCC-CccC--CC-cccccCcccEEEecCC-cccc--cCccccCCC-CCcEEeccCCc-cC--CCCChHHhhcCCCCcEEE
Q 038902 574 ENT-HLEK--AP-LKKEFKELVILILRGS-SIRE--LPKGLERWI-NLKLLDLSNNI-FL--QGIPPNIISKLCQLEELY 642 (997)
Q Consensus 574 ~~~-~l~~--lp-~~~~l~~L~~L~L~~~-~l~~--lp~~~~~l~-~L~~L~l~~~~-~~--~~~~~~~l~~l~~L~~L~ 642 (997)
++| .++. ++ .+.++++|++|++++| .+.. ++..+..++ +|++|++++|. .+ ..++.. ++.+++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 666 4553 34 4556666666666666 5553 445555666 66666666663 12 122322 45566666666
Q ss_pred eecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEec
Q 038902 643 IGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHIN 680 (997)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 680 (997)
+++|.. .....+..+..+++|+.|++++|
T Consensus 229 l~~~~~---------l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 229 LSDSVM---------LKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCTT---------CCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCCc---------CCHHHHHHHhCCCCCCEeeCCCC
Confidence 655421 01122334555566666666555
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=9.2e-14 Score=142.62 Aligned_cols=145 Identities=26% Similarity=0.419 Sum_probs=118.8
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l 578 (997)
+.++..++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 46777788888887644 37899999999998888887888899999999999988866 67888899999999999999
Q ss_pred cCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 579 EKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
+.+| .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+..+++|++|+++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 8887 468889999999999988877 4667888899999999887 66666655777778888877664
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=1.6e-13 Score=159.84 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=143.0
Q ss_pred cCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCC
Q 038902 497 KEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENT 576 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 576 (997)
.+++.|+++++.+..+|... +++|++|++++|.+..++ ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 37889999999888888754 588999999999998777 457899999999999999888 665 9999999999
Q ss_pred CccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCC
Q 038902 577 HLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETP 656 (997)
Q Consensus 577 ~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 656 (997)
.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|. +..+|. ++ ++|+.|++++|... .++
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~----~lp 196 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE----SLP 196 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS----SCC
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC----chh
Confidence 9999887 78999999999999998886 67899999999998 666887 44 89999999886321 111
Q ss_pred CCCCCChHhh-hCCCCCCEEEEEeccccccccccCCCCCCccEEEEEecCc
Q 038902 657 NPKSAAFKEV-ASLSRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDD 706 (997)
Q Consensus 657 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 706 (997)
. ....+ ...+.|+.|++++|.+..+|..+.. +++|+.|++++|..
T Consensus 197 ~----~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 197 A----VPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPL 242 (571)
T ss_dssp C----CC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSC
T ss_pred h----HHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcC
Confidence 1 00011 1223349999999998888776654 77788877777655
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=155.34 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=73.1
Q ss_pred CceEEEcccCCCcCC-CCC---CCCCCccEEEccCCCCCCCCh----hHhhcCccccEEEecCcccCCCC-ccccccccC
Q 038902 498 EYKKISLMDSGINKL-PDE---PMCPQLLTLFLQHNAFDKIPP----GFFEHMREINFLDLSYTNISTLP-GSIECLVKL 568 (997)
Q Consensus 498 ~~~~L~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L 568 (997)
+++.|++++|.+... |.. ..+++|++|++++|.+....+ ..+..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 455555655544322 222 345556666666655443221 22234555666666666555443 445555666
Q ss_pred CEEEcCCCCccC---CC---cccccCcccEEEecCCcccccCcc----ccCCCCCcEEeccCCccCCCCChHHhhcC---
Q 038902 569 RSLRAENTHLEK---AP---LKKEFKELVILILRGSSIRELPKG----LERWINLKLLDLSNNIFLQGIPPNIISKL--- 635 (997)
Q Consensus 569 ~~L~L~~~~l~~---lp---~~~~l~~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--- 635 (997)
++|++++|.+.. ++ .++.+++|++|++++|+++.+|.. +..+++|++|++++|......|.. ++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCc
Confidence 666666655432 21 234555566666666555544331 345556666666655533222433 3333
Q ss_pred CCCcEEEeecC
Q 038902 636 CQLEELYIGNS 646 (997)
Q Consensus 636 ~~L~~L~l~~~ 646 (997)
++|++|++++|
T Consensus 251 ~~L~~L~Ls~N 261 (310)
T 4glp_A 251 SALNSLNLSFA 261 (310)
T ss_dssp TTCCCEECCSS
T ss_pred CcCCEEECCCC
Confidence 45555555544
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=6.5e-14 Score=141.23 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=99.4
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccC--CCcccccCcccEEE
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEK--APLKKEFKELVILI 594 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~--lp~~~~l~~L~~L~ 594 (997)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+.++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 5677777777777777655 2567777777777777665543 56777777777777777765 23677777777777
Q ss_pred ecCCcccc-cCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCC
Q 038902 595 LRGSSIRE-LPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLT 673 (997)
Q Consensus 595 L~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 673 (997)
+++|.+.. .|..+..+++|++|++++|..+..+|. ++.+++|++|++++|.. ..+..+..+++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i------------~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV------------HDYRGIEDFPKLN 184 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCC------------CCCTTGGGCSSCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCC------------cChHHhccCCCCC
Confidence 77777764 456677777777777777765666653 67777777777766521 0112456666777
Q ss_pred EEEEEeccc
Q 038902 674 VLYIHINST 682 (997)
Q Consensus 674 ~L~l~~~~~ 682 (997)
.|++++|.+
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 777766653
No 111
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=7.6e-13 Score=147.39 Aligned_cols=287 Identities=13% Similarity=0.115 Sum_probs=169.2
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-----CCHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-----SDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-----~~~~~~~~~i~~~l 215 (997)
.|+||+.+++.|.+ +.. +++.|+|++|+|||||+++++++... ..+|+++... .+...+...+.+.+
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----CEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 79999999999999 765 69999999999999999999987642 2488887653 34455555555443
Q ss_pred CC------------------CC-----chhh---HHHHHHHHHHHHHhcC-CcEEEEEccccccc-----cccccccccC
Q 038902 216 KF------------------KI-----EEED---ELQRRATLAKRLRERT-KKVLIILDDVREKI-----NLAVSGIPYG 263 (997)
Q Consensus 216 ~~------------------~~-----~~~~---~~~~~~~l~~~l~~~~-k~~LlvlDdv~~~~-----~~~~l~~~~~ 263 (997)
.. .. +... .......+.+.+.... ++++||+||++... ++..+...+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 10 00 0000 0112233445555422 49999999997643 2222211121
Q ss_pred CCCCceEEEEeeCChhhhhc----------CC--C-eeEEcCCCCHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHhCC
Q 038902 264 EERKRCKVIVTSRRLDVCSK----------MS--D-VTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKACGS 328 (997)
Q Consensus 264 ~~~~gs~iivTtr~~~v~~~----------~~--~-~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~i~~~~~g 328 (997)
....+.++|+|++....... .. . ..+.+.+|+.+++.+++...+. ...... . ..|++.++|
T Consensus 166 ~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~~~t~G 241 (357)
T 2fna_A 166 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVYEKIGG 241 (357)
T ss_dssp HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHHHHHCS
T ss_pred HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHHHHhCC
Confidence 12246789999998653211 11 1 5899999999999999987653 112222 1 789999999
Q ss_pred chhHHHHHHHHHcCCCcccchhhhhhhhH-HHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccCCCC
Q 038902 329 LPNAIAIVAGALRGKLANESNESLVNIWN-DAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLFPAY 407 (997)
Q Consensus 329 lPlai~~~~~~l~~~~~~~~~~~~~~~w~-~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~ 407 (997)
+|+++..++..+..... ...|- .+.+. .... ....+...+. .-..+++..+..+..+|. .
T Consensus 242 ~P~~l~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~-------~~~~l~~~~~-~~~~l~~~~~~~l~~la~--g- 302 (357)
T 2fna_A 242 IPGWLTYFGFIYLDNKN-------LDFAINQTLEY-AKKL-------ILKEFENFLH-GREIARKRYLNIMRTLSK--C- 302 (357)
T ss_dssp CHHHHHHHHHHHHHHCC-------HHHHHHHHHHH-HHHH-------HHHHHHHHHT-TCGGGHHHHHHHHHHHTT--C-
T ss_pred CHHHHHHHHHHHccccc-------hHHHHHHHHHH-HHHH-------HHHHHHHHhh-ccccccHHHHHHHHHHHc--C-
Confidence 99999999887653222 12221 11111 0000 0000100000 001688899999999987 2
Q ss_pred CccchhhHHHHhh-ccccccccccHHHHHHHHHHHHHHHHhccccccccCCCeEEe-cchhHHH
Q 038902 408 RSVPIEDFVMHGL-VDRLFRDVDSMGGVLNKMQSIVEDLRNRKILSYREGEGTYRI-HDNTRIV 469 (997)
Q Consensus 408 ~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~m-Hdli~~~ 469 (997)
. +...+..... ..|. ..+..+ ...+++.|++.+++...+ +.|++ |++++++
T Consensus 303 -~-~~~~l~~~~~~~~g~---~~~~~~----~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 -G-KWSDVKRALELEEGI---EISDSE----IYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp -B-CHHHHHHHHHHHHCS---CCCHHH----HHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred -C-CHHHHHHHHHHhcCC---CCCHHH----HHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 2 4444443210 0110 011122 334799999999997653 56775 6777765
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=2.7e-13 Score=136.66 Aligned_cols=149 Identities=12% Similarity=0.150 Sum_probs=131.0
Q ss_pred ChhhhcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCC-CCccccccccCCE
Q 038902 492 PQEDLKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST-LPGSIECLVKLRS 570 (997)
Q Consensus 492 ~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~l~~l~~L~~ 570 (997)
+...+.+++.|+++++.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++.+++|++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred ChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 33447899999999999999886568999999999999776554 57889999999999999984 6888999999999
Q ss_pred EEcCCCCccC-CC-cccccCcccEEEecCCc-ccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 571 LRAENTHLEK-AP-LKKEFKELVILILRGSS-IRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 571 L~L~~~~l~~-lp-~~~~l~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|++++|.++. .| .++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|+++++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCc
Confidence 9999999987 34 89999999999999997 88887 68999999999999998 667773 899999999999876
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=3.2e-13 Score=157.38 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=125.8
Q ss_pred CCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCC
Q 038902 519 PQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGS 598 (997)
Q Consensus 519 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~ 598 (997)
.+|+.|++++|.+..++... +++|++|++++|.++.+| ..+++|++|++++|.++.+|.+.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 37888888888887776644 367888888888888887 457888888888888888776443 8888888888
Q ss_pred cccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEE
Q 038902 599 SIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIH 678 (997)
Q Consensus 599 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 678 (997)
++..+|. .+++|++|++++|. +..+|. .+++|++|++++|.. .. ... +. ++|+.|+++
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L----~~-------lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQL----TF-------LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCC----SC-------CCC-CC--TTCCEEECC
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCC----CC-------cch-hh--CCCCEEECc
Confidence 8888776 67888888888887 555665 467778888776521 11 111 22 677777777
Q ss_pred eccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhccccceecCCCCCCcccccccccCC
Q 038902 679 INSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGL 758 (997)
Q Consensus 679 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l 758 (997)
+|.+..++. + . .+| ....+.|+.|+|++ +.+..++. .+..+
T Consensus 189 ~N~L~~lp~-~-~--~~L---------------------------------~~~~~~L~~L~Ls~-N~l~~lp~-~l~~l 229 (571)
T 3cvr_A 189 TNLLESLPA-V-P--VRN---------------------------------HHSEETEIFFRCRE-NRITHIPE-NILSL 229 (571)
T ss_dssp SSCCSSCCC-C-C-------------------------------------------CCEEEECCS-SCCCCCCG-GGGGS
T ss_pred CCCCCchhh-H-H--Hhh---------------------------------hcccccceEEecCC-CcceecCH-HHhcC
Confidence 776665554 2 1 122 00023345666633 33555553 33348
Q ss_pred CCccEEEEeccCCccccch
Q 038902 759 TALMTMHLRACSLQRIFRS 777 (997)
Q Consensus 759 ~~L~~L~L~~~~l~~~~~~ 777 (997)
++|+.|+|++|++++..|.
T Consensus 230 ~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHH
Confidence 8899999999988776554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=2.7e-13 Score=139.08 Aligned_cols=145 Identities=19% Similarity=0.337 Sum_probs=112.5
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCC-hhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCC
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIP-PGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTH 577 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~ 577 (997)
+.++++++.+..+|... .+.++.|++++|.+..++ ...|..+++|++|++++|.++.++. .+..+.+|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47788888888887633 456788888888888774 4567888888888888888887654 68888888888888888
Q ss_pred ccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 578 LEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 578 l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
++.++ .+..+++|++|++++|++..+ |..+..+++|++|++++|. +..+++..+..+++|++|+++++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 88876 578888888888888888877 5667888888888888887 55554444677777777777654
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=5.9e-14 Score=158.13 Aligned_cols=140 Identities=17% Similarity=0.091 Sum_probs=86.1
Q ss_pred hHhhcCccccEEEecCcccCC-----CCccccccccCCEEEcCCCCccCC----C-c-------ccccCcccEEEecCCc
Q 038902 537 GFFEHMREINFLDLSYTNIST-----LPGSIECLVKLRSLRAENTHLEKA----P-L-------KKEFKELVILILRGSS 599 (997)
Q Consensus 537 ~~~~~l~~L~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l~~l----p-~-------~~~l~~L~~L~L~~~~ 599 (997)
..+..+++|++|++++|.++. ++..+..+++|++|++++|.+..+ | . +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345678888888888888773 344567788888888888755432 3 2 2577888888888887
Q ss_pred ccc-----cCccccCCCCCcEEeccCCccCCCCChHH----hhcC---------CCCcEEEeecCCCCcccccCCCCCCC
Q 038902 600 IRE-----LPKGLERWINLKLLDLSNNIFLQGIPPNI----ISKL---------CQLEELYIGNSFGNWELEETPNPKSA 661 (997)
Q Consensus 600 l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~ 661 (997)
+.. +|..+..+++|++|++++|.. ...+... +..+ ++|++|++++|..... ....
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------~~~~ 178 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------SMKE 178 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------GHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------HHHH
Confidence 765 566777788888888888763 2211111 2223 6777777766521100 0000
Q ss_pred ChHhhhCCCCCCEEEEEecccc
Q 038902 662 AFKEVASLSRLTVLYIHINSTE 683 (997)
Q Consensus 662 ~~~~l~~l~~L~~L~l~~~~~~ 683 (997)
....+..+++|+.|++++|.+.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCC
Confidence 1124556666777766666543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=6.9e-13 Score=140.14 Aligned_cols=143 Identities=20% Similarity=0.303 Sum_probs=129.3
Q ss_pred hcCceEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCC
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAEN 575 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 575 (997)
+.+++.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|++|++++|.++.+|.... .+|++|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 67899999999999999865689999999999999998877 8899999999999999998876444 9999999999
Q ss_pred CCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 576 THLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 576 ~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|.++.++.+..+++|++|++++|++..+| .+..+++|++|++++|. +..++. +..+++|+.|+++++
T Consensus 116 N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 116 NELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEE
T ss_pred CccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCC
Confidence 99999999999999999999999999886 68999999999999998 555533 889999999999876
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.5e-13 Score=151.28 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=138.6
Q ss_pred hcCceEEEcccCCCcCCCC----C-C-CCC-CccEEEccCCCCCCCChhHhhcC-----ccccEEEecCcccCCCC-cc-
Q 038902 496 LKEYKKISLMDSGINKLPD----E-P-MCP-QLLTLFLQHNAFDKIPPGFFEHM-----REINFLDLSYTNISTLP-GS- 561 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~----~-~-~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~lp-~~- 561 (997)
..++++|++++|.+...+. . . .++ +|++|++++|.+.......+..+ ++|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3458889999888877764 1 1 566 89999999998887776666654 88999999999887443 32
Q ss_pred ---cccc-ccCCEEEcCCCCccCCC--c----ccc-cCcccEEEecCCccc-----ccCccccCCC-CCcEEeccCCccC
Q 038902 562 ---IECL-VKLRSLRAENTHLEKAP--L----KKE-FKELVILILRGSSIR-----ELPKGLERWI-NLKLLDLSNNIFL 624 (997)
Q Consensus 562 ---l~~l-~~L~~L~L~~~~l~~lp--~----~~~-l~~L~~L~L~~~~l~-----~lp~~~~~l~-~L~~L~l~~~~~~ 624 (997)
+..+ ++|++|++++|.++..+ . +.. ..+|++|++++|.+. .++..+..++ +|++|++++|. +
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-L 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-C
Confidence 4444 78999999999888765 3 233 358999999998877 4455556665 89999999987 4
Q ss_pred CCCChHH----hhcC-CCCcEEEeecCCCCcccccCCCCCCCChHhhhC-CCCCCEEEEEecccccccc----ccCCCCC
Q 038902 625 QGIPPNI----ISKL-CQLEELYIGNSFGNWELEETPNPKSAAFKEVAS-LSRLTVLYIHINSTEVLSK----QFDGPWG 694 (997)
Q Consensus 625 ~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~----~~~~~~~ 694 (997)
...+... +..+ ++|++|++++|..... ........+.. .++|+.|++++|.+...+. .....++
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChh------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 4444321 3344 5899999887631100 00112234444 4589999999887665443 3345668
Q ss_pred CccEEEEEecC
Q 038902 695 NLKRFRVQVND 705 (997)
Q Consensus 695 ~L~~L~l~~~~ 705 (997)
+|+.|++++|.
T Consensus 254 ~L~~L~L~~n~ 264 (362)
T 3goz_A 254 HLQTVYLDYDI 264 (362)
T ss_dssp TCSEEEEEHHH
T ss_pred CccEEEeccCC
Confidence 88888888876
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=6.5e-13 Score=147.74 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=106.1
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhh-cCccccEEEecCcccCCCC-ccccccccCCEEEcCCCC
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFE-HMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTH 577 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~ 577 (997)
+.+++.++.+..+|... .+.++.|++++|.+..+++..|. ++++|++|++++|.++.++ ..+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 56777777777777633 35678888888888877777776 7888888888888888665 457788888888888888
Q ss_pred ccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHh---hcCCCCcEEEeecC
Q 038902 578 LEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNII---SKLCQLEELYIGNS 646 (997)
Q Consensus 578 l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~ 646 (997)
++.++ .+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|+++++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC
Confidence 87775 577888888888888887766 4567788888888888876 566776544 44666666666554
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=1e-12 Score=134.76 Aligned_cols=120 Identities=24% Similarity=0.364 Sum_probs=64.7
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCC-C-cccccCcccEEEecCC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKA-P-LKKEFKELVILILRGS 598 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~~~ 598 (997)
+.++++++.+..+|... .++|+.|++++|.++.+|. .+..+++|++|++++|.++.+ | .+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666655555432 2456666666666665543 455566666666666665554 2 5555666666666666
Q ss_pred cccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeec
Q 038902 599 SIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGN 645 (997)
Q Consensus 599 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 645 (997)
.+..+|.. +..+++|++|++++|. +..++...+..+++|+.|++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC
Confidence 65555543 3455566666666555 3333333244444444444433
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=5.2e-13 Score=135.97 Aligned_cols=121 Identities=26% Similarity=0.455 Sum_probs=86.0
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCCC--cccccCcccEEEecCC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGS 598 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~ 598 (997)
+.++++++.+..++... .++|++|++++|.++.+|. .+..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777776666433 4578888888888876654 3577888888888888877776 4677888888888888
Q ss_pred cccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 599 SIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 599 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
++..+|.. +..+++|++|++++|. +..++...++.+++|++|+++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 77777644 5677888888888776 55666554566677777776554
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=7.6e-13 Score=147.19 Aligned_cols=156 Identities=28% Similarity=0.346 Sum_probs=135.0
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCCC---CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-ccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDEP---MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l 565 (997)
.+|......++.|++++|.+..++... .+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|. .+..+
T Consensus 32 ~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 32 NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 566655678999999999999887653 78999999999999999998889999999999999999998764 68899
Q ss_pred ccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccCccc----cCCCCCcEEeccCCccCCCCChHHhhcCCCC-
Q 038902 566 VKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELPKGL----ERWINLKLLDLSNNIFLQGIPPNIISKLCQL- 638 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L- 638 (997)
.+|++|+|++|.++.++ .+..+++|++|+|++|.+..+|..+ ..+++|++|++++|. +..+|...+..++.+
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWV 190 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhh
Confidence 99999999999999874 8999999999999999999998765 579999999999998 778887767777763
Q ss_pred -cEEEeecC
Q 038902 639 -EELYIGNS 646 (997)
Q Consensus 639 -~~L~l~~~ 646 (997)
+.|++.++
T Consensus 191 l~~l~l~~N 199 (361)
T 2xot_A 191 KNGLYLHNN 199 (361)
T ss_dssp HTTEECCSS
T ss_pred cceEEecCC
Confidence 67777654
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=8.2e-12 Score=140.71 Aligned_cols=290 Identities=16% Similarity=0.086 Sum_probs=180.1
Q ss_pred ccccccHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-----CCceEEEEEccCCCHHHHHHH
Q 038902 140 SDLTHSSKALNSIMKLLKD----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-----PHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~wv~v~~~~~~~~~~~~ 210 (997)
..++||+.+++++.+++.. +..+.+.|+|++|+||||+|+.+++...... .+..+|+++....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 4799999999999998842 4567899999999999999999998875421 333388888888889999999
Q ss_pred HHHHhCCCCch--hhHHHHHHHHHHHHHhcCCcEEEEEccccccccc----ccccccc--CCC---CCceEEEEeeCChh
Q 038902 211 IAELLKFKIEE--EDELQRRATLAKRLRERTKKVLIILDDVREKINL----AVSGIPY--GEE---RKRCKVIVTSRRLD 279 (997)
Q Consensus 211 i~~~l~~~~~~--~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~----~~l~~~~--~~~---~~gs~iivTtr~~~ 279 (997)
++.+++...+. .+.......+.+.+...+++.+||+||++..... +.+...+ ... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765332 2344555666677755457999999999775321 2221111 111 34567888887653
Q ss_pred --------hhhcCCCeeEEcCCCCHHHHHHHHHHHcCC--CCChhhHHHHHHHHHHhC---Cch-hHHHHHHHHHc----
Q 038902 280 --------VCSKMSDVTVQIEELGEEDRLKLFKQIARL--PDSEAFEGAAKVIVKACG---SLP-NAIAIVAGALR---- 341 (997)
Q Consensus 280 --------v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~i~~~~~---glP-lai~~~~~~l~---- 341 (997)
+..++....+.+++++.++..+++.+.+.. ....-.++....+++.++ |.| .|+..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 222333358899999999999999887531 122222346677888888 999 34333333221
Q ss_pred -CCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhc-cCCCCCccchhhHHHHh
Q 038902 342 -GKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCC-LFPAYRSVPIEDFVMHG 419 (997)
Q Consensus 342 -~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w 419 (997)
+.... +.+.++.++.. ... ..+.-++..|++..+..+...+ ++.+...+...++.+..
T Consensus 259 ~~~~~i-----~~~~v~~a~~~-~~~--------------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 259 RREERV-----RREHVYSARAE-IER--------------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp TTCSCB-----CHHHHHHHHHH-HHH--------------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred cCCCCc-----CHHHHHHHHHH-Hhh--------------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 21110 13556666555 211 1133456778887777766555 55433345555444432
Q ss_pred hcc--ccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038902 420 LVD--RLFRDVDSMGGVLNKMQSIVEDLRNRKILSY 453 (997)
Q Consensus 420 ~a~--g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 453 (997)
... ..-....+ ...+..+++.|...++++.
T Consensus 319 ~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 319 KELTSTLGLEHVT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHTTCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCC----HHHHHHHHHHHHhCCCeEE
Confidence 211 10001111 1234458999999999975
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=3.6e-12 Score=131.67 Aligned_cols=137 Identities=23% Similarity=0.350 Sum_probs=121.9
Q ss_pred CCChhhhcCceEEEcccCCCcCCCCC--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPDE--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLV 566 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~ 566 (997)
.+|.....+++.|++++|.+..++.. ..+++|+.|++++|.+..+++..|..+++|++|++++|.++.+|.. +..++
T Consensus 33 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 55655578999999999999888553 2899999999999999999998899999999999999999988754 68999
Q ss_pred cCCEEEcCCCCccCCC-cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccCCccCCC
Q 038902 567 KLRSLRAENTHLEKAP-LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSNNIFLQG 626 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~ 626 (997)
+|++|++++|.++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.....
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999999999999998 89999999999999999998874 588999999999999985433
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.6e-14 Score=169.57 Aligned_cols=178 Identities=20% Similarity=0.201 Sum_probs=119.3
Q ss_pred cCceEEEcccCCCcCCCCCC-CCCCccEEEccCCC-------------CCCCChhHhhcCccccEEE-ecCcccCCCCc-
Q 038902 497 KEYKKISLMDSGINKLPDEP-MCPQLLTLFLQHNA-------------FDKIPPGFFEHMREINFLD-LSYTNISTLPG- 560 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~i~~lp~- 560 (997)
.++++|++++|.+..+|... .|++|+.|++++|. ....++..++.+++|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 45666777777777776654 67777777775553 3344455566677777776 45443332221
Q ss_pred -----cccc--cccCCEEEcCCCCccCCCcccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhh
Q 038902 561 -----SIEC--LVKLRSLRAENTHLEKAPLKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIIS 633 (997)
Q Consensus 561 -----~l~~--l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 633 (997)
.+.. ...|++|++++|.++.+|.++++++|++|++++|.+..+|..++.+++|++|++++|. +..+| . ++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cC
Confidence 1111 1257788888888888877888888888888888888888888888888888888887 55676 3 77
Q ss_pred cCCCCcEEEeecCCCCcccccCCCCCCCC-hHhhhCCCCCCEEEEEecccccccc
Q 038902 634 KLCQLEELYIGNSFGNWELEETPNPKSAA-FKEVASLSRLTVLYIHINSTEVLSK 687 (997)
Q Consensus 634 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 687 (997)
.+++|++|++++|.. .... +..++.+++|+.|++++|.+...++
T Consensus 506 ~l~~L~~L~Ls~N~l----------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 506 NLPRLQELLLCNNRL----------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCSSCCEEECCSSCC----------CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcEEECCCCCC----------CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888888888876521 1111 4567778888888888877666554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.9e-12 Score=126.78 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=67.4
Q ss_pred CCccEEEccCCCCC--CCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccC-CC-cccccCcccEEE
Q 038902 519 PQLLTLFLQHNAFD--KIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEK-AP-LKKEFKELVILI 594 (997)
Q Consensus 519 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-lp-~~~~l~~L~~L~ 594 (997)
++|+.|++++|.+. .++. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +| .+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 3322 245556666666666655554 445556666666666665555 44 344456666666
Q ss_pred ecCCcccccC--ccccCCCCCcEEeccCCccCCCCCh---HHhhcCCCCcEEEeecC
Q 038902 595 LRGSSIRELP--KGLERWINLKLLDLSNNIFLQGIPP---NIISKLCQLEELYIGNS 646 (997)
Q Consensus 595 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 646 (997)
+++|.+..+| ..+..+++|++|++++|. +..+|. ..+..+++|+.|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666555544 455556666666666655 334443 22445555555555443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.2e-12 Score=125.30 Aligned_cols=122 Identities=25% Similarity=0.374 Sum_probs=78.1
Q ss_pred CCccEEEccCCCCC--CCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccC-CC-cccccCcccEEE
Q 038902 519 PQLLTLFLQHNAFD--KIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEK-AP-LKKEFKELVILI 594 (997)
Q Consensus 519 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-lp-~~~~l~~L~~L~ 594 (997)
++|+.|++++|.+. .++ ..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +| .++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666655 333 3445666777777777766665 556667777777777776666 55 455577777777
Q ss_pred ecCCcccccC--ccccCCCCCcEEeccCCccCCCCCh---HHhhcCCCCcEEEe
Q 038902 595 LRGSSIRELP--KGLERWINLKLLDLSNNIFLQGIPP---NIISKLCQLEELYI 643 (997)
Q Consensus 595 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l 643 (997)
+++|.+..+| ..+..+++|++|++++|. +..++. ..++.+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 7777766654 566677777777777775 444444 33666777776665
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.4e-12 Score=126.04 Aligned_cols=131 Identities=20% Similarity=0.134 Sum_probs=116.4
Q ss_pred hcCceEEEcccCCCc--CCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCC-CCccccccccCCEE
Q 038902 496 LKEYKKISLMDSGIN--KLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST-LPGSIECLVKLRSL 571 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~l~~l~~L~~L 571 (997)
+.+++.|+++++.+. .+|... .+++|+.|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999887 888764 899999999999998877 567889999999999999997 77777889999999
Q ss_pred EcCCCCccCCC---cccccCcccEEEecCCcccccCc----cccCCCCCcEEeccCCccCCCCCh
Q 038902 572 RAENTHLEKAP---LKKEFKELVILILRGSSIRELPK----GLERWINLKLLDLSNNIFLQGIPP 629 (997)
Q Consensus 572 ~L~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~~~~ 629 (997)
++++|.++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999999875 78899999999999999998886 78899999999999997 555554
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=6.3e-12 Score=128.89 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=120.8
Q ss_pred CCChhhhcCceEEEcccCCCcCCCC-C--CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-ccccc
Q 038902 490 GWPQEDLKEYKKISLMDSGINKLPD-E--PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECL 565 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~~l~~-~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l 565 (997)
.+|......++.|++++|.+..++. . ..+++|+.|++++|.+..+++..|.++++|++|++++|.++.+|. .+..+
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 4565556678999999999988854 2 389999999999999999998889999999999999999998765 58899
Q ss_pred ccCCEEEcCCCCccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCC
Q 038902 566 VKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQG 626 (997)
Q Consensus 566 ~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~ 626 (997)
++|++|++++|.++.++ .+..+++|++|++++|.+..+ |..+..+++|++|++++|.....
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999999999999884 799999999999999999988 67899999999999999985433
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=6.9e-11 Score=132.89 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=172.3
Q ss_pred ccccccHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-------CCceEEEEEccCC-CHHHH
Q 038902 140 SDLTHSSKALNSIMKLLK----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-------PHDKAHVIVAESS-DLRRI 207 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------~f~~~wv~v~~~~-~~~~~ 207 (997)
..++||+.+++++.+++. .+..+.+.|+|++|+||||+|+.+++...... .+..+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 379999999999987764 34567999999999999999999999874421 2333888887777 88899
Q ss_pred HHHHHHHh-CCCCc--hhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc---ccc-cccccCCCCCceEEEEeeCChhh
Q 038902 208 QDKIAELL-KFKIE--EEDELQRRATLAKRLRERTKKVLIILDDVREKIN---LAV-SGIPYGEERKRCKVIVTSRRLDV 280 (997)
Q Consensus 208 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---~~~-l~~~~~~~~~gs~iivTtr~~~v 280 (997)
...++.++ +.... ..+.......+.+.+.. ++.+|||||++.... .+. +...+... .+..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 99999887 33221 12223445566666765 555999999987532 222 21112222 67889999987532
Q ss_pred --------hhcCCCeeEEcCCCCHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHhC---Cchh-HHHHHHHHH--cC--
Q 038902 281 --------CSKMSDVTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKACG---SLPN-AIAIVAGAL--RG-- 342 (997)
Q Consensus 281 --------~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l--~~-- 342 (997)
..+++ ..+.+++++.++..++|..++. .....-.++....|++.++ |.|. |+..+..+. ..
T Consensus 177 ~~~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 177 RDYMEPRVLSSLG-PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTTSCHHHHHTCC-CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred HhhhCHHHHhcCC-CeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 22222 3899999999999999998753 1111222346677888888 8876 444444333 21
Q ss_pred CCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccCCCCCccchhhHHHHhhcc
Q 038902 343 KLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLFPAYRSVPIEDFVMHGLVD 422 (997)
Q Consensus 343 ~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~ 422 (997)
... +.+.+..++.. ... ..+..++..|++..+..+..++....+..+. +......-..
T Consensus 256 ~~i------~~~~v~~~~~~-~~~--------------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~ 313 (384)
T 2qby_B 256 GII------RKEHVDKAIVD-YEQ--------------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKF 313 (384)
T ss_dssp SCC------CHHHHHHHHHH-HHH--------------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHT
T ss_pred Ccc------CHHHHHHHHHH-Hhc--------------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHc
Confidence 111 14666666655 221 1234456677877777766666511100111 0111111111
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038902 423 RLFRDVDSMGGVLNKMQSIVEDLRNRKILSY 453 (997)
Q Consensus 423 g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 453 (997)
| ....+.. ...+++..|.+.++++.
T Consensus 314 g--~~~~~~~----~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 314 K--QKPLSYR----RFSDIISELDMFGIVKI 338 (384)
T ss_dssp T--CCCCCHH----HHHHHHHHHHHTTSEEE
T ss_pred C--CCCCCHH----HHHHHHHHHHhCCCEEE
Confidence 2 1111222 23457999999999964
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=9.9e-11 Score=131.88 Aligned_cols=289 Identities=16% Similarity=0.099 Sum_probs=180.5
Q ss_pred ccccccHHHHHHHHHHhcc----CCce--EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHH
Q 038902 140 SDLTHSSKALNSIMKLLKD----DKVN--IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAE 213 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~ 213 (997)
..++||+.+++++.+++.. +... .+.|+|++|+||||+|+.+++.......+..++++++...+...+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 4799999999999988854 3334 899999999999999999999876532244488887777888899999999
Q ss_pred HhCCCCch--hhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCC-C---CceEEEEeeCChhhhhcC-
Q 038902 214 LLKFKIEE--EDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-R---KRCKVIVTSRRLDVCSKM- 284 (997)
Q Consensus 214 ~l~~~~~~--~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~-~---~gs~iivTtr~~~v~~~~- 284 (997)
.++...+. .+.......+.+.+...+++.+||+||++.. .....+...+... . .+..||+||+.......+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 98764332 2344555666666665457899999999875 2222332222111 1 366788888876443322
Q ss_pred -------CCeeEEcCCCCHHHHHHHHHHHcCC--CCChhhHHHHHHHHHHh---------CCchhHHHHHH-HHHc----
Q 038902 285 -------SDVTVQIEELGEEDRLKLFKQIARL--PDSEAFEGAAKVIVKAC---------GSLPNAIAIVA-GALR---- 341 (997)
Q Consensus 285 -------~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~i~~~~---------~glPlai~~~~-~~l~---- 341 (997)
....+.+++++.++..+++...+.. ....-.++....|++.+ +|.|-.+..+. .+..
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 2247999999999999999887631 11223345778899999 78875444333 2221
Q ss_pred -CCCcccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhccCC---CCCccchhhHHH
Q 038902 342 -GKLANESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCLFP---AYRSVPIEDFVM 417 (997)
Q Consensus 342 -~~~~~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~ 417 (997)
+... -.++.+... +.... ...+.-.+..|+.+.+.++..++.+. .+..+....+..
T Consensus 257 ~~~~~--------i~~~~v~~~-~~~~~-----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 257 NGRKH--------IAPEDVRKS-SKEVL-----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp TTCSS--------CCHHHHHHH-HHHHS-----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred hCCCC--------cCHHHHHHH-HHHHh-----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 2221 122222222 22211 11233446678888888777666543 222456666655
Q ss_pred Hhhcc----ccccccccHHHHHHHHHHHHHHHHhccccccc
Q 038902 418 HGLVD----RLFRDVDSMGGVLNKMQSIVEDLRNRKILSYR 454 (997)
Q Consensus 418 ~w~a~----g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 454 (997)
.+... |. .. -+. .....++++|...+++...
T Consensus 317 ~~~~~~~~~~~-~~-~~~----~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 317 SYKIVCEEYGE-RP-RVH----SQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTC-CC-CCH----HHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHcCC-CC-CCH----HHHHHHHHHHHhCCCeEEe
Confidence 44321 11 00 111 2344589999999999653
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.7e-12 Score=128.19 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-c-ccccCcccEE
Q 038902 516 PMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-L-KKEFKELVIL 593 (997)
Q Consensus 516 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~-~~~l~~L~~L 593 (997)
..+++|+.|++++|.+..++. .....++|++|++++|.++.+ ..++.+++|++|++++|.++.+| . +..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 356677777777777666532 223333777777777777766 55677777777777777777766 3 3677777777
Q ss_pred EecCCcccccCc--cccCCCCCcEEeccCCccCCCCChH---HhhcCCCCcEEEeecC
Q 038902 594 ILRGSSIRELPK--GLERWINLKLLDLSNNIFLQGIPPN---IISKLCQLEELYIGNS 646 (997)
Q Consensus 594 ~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~ 646 (997)
++++|.+..+|. .+..+++|++|++++|. +..+|.. .++.+++|+.|+++++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 777777777665 66777777777777776 3455543 3556666666665543
No 132
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.27 E-value=3.9e-12 Score=113.43 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred HHHHHHHhhhhhhhhhhhcceecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHH
Q 038902 13 PVASRTVDGLGNRVEEQIGYLLDYDDNLEGFRTRAGQLEARKNDVLGQVDKARDNN-EKIKEAVLLWLAKAIQIEIDKEM 91 (997)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~a~~~~-~~~~~~~~~w~~~~~~~~~~~e~ 91 (997)
|+++++++||.+++.+|+..+.+++++++.|++||+.|+++ +.+|++++ ...++.++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~-------L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAA-------LIKIGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999887 66677663 34789999999999999999999
Q ss_pred HHHHHhhcC
Q 038902 92 MEEKIEKNK 100 (997)
Q Consensus 92 ~~~~~~~~~ 100 (997)
++|+|.++.
T Consensus 74 ~iD~f~~~~ 82 (115)
T 3qfl_A 74 VVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997653
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=6.1e-12 Score=120.33 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=109.8
Q ss_pred hcCceEEEcccCCCc--CCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCC-CCccccccccCCEE
Q 038902 496 LKEYKKISLMDSGIN--KLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNIST-LPGSIECLVKLRSL 571 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~l~~l~~L~~L 571 (997)
..+++.|+++++.+. .+|... .+++|+.|++++|.+..+ ..+..+++|++|++++|.++. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999887 788764 899999999999998887 567899999999999999997 78878889999999
Q ss_pred EcCCCCccCCC---cccccCcccEEEecCCcccccCc----cccCCCCCcEEeccC
Q 038902 572 RAENTHLEKAP---LKKEFKELVILILRGSSIRELPK----GLERWINLKLLDLSN 620 (997)
Q Consensus 572 ~L~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~l~~ 620 (997)
++++|.++.+| .++.+++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999863 78999999999999999998876 688999999999863
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.2e-11 Score=121.81 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=62.7
Q ss_pred EEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC--cccccCcccEEEecCCcc
Q 038902 523 TLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSI 600 (997)
Q Consensus 523 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l 600 (997)
+++++++.+..+|... .++|++|++++|.++.+|..+..+.+|++|++++|.++.++ .+.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4445555444444322 23455555555555555555555555555555555555554 355555555555555555
Q ss_pred cccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeec
Q 038902 601 RELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGN 645 (997)
Q Consensus 601 ~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 645 (997)
..+|. .+..+++|++|++++|. +..+|...+..+++|+.|++++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 55532 35555555666655555 4444444344555555555544
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=6.5e-11 Score=133.24 Aligned_cols=290 Identities=14% Similarity=0.130 Sum_probs=173.6
Q ss_pred ccccccHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC--CCceEEEEEccCCCHHHHHHHHHH
Q 038902 140 SDLTHSSKALNSIMKLLK----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA--PHDKAHVIVAESSDLRRIQDKIAE 213 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~wv~v~~~~~~~~~~~~i~~ 213 (997)
..|+||+.+++.+.+++. .+..+.+.|+|++|+||||||+.+++...... .+..+|+++....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999886 34567899999999999999999999876532 233388888777788888888888
Q ss_pred HhCCCCch--hhHHHHHHHHHHHHHhcCCcEEEEEcccccccc------ccccccccCC-CCCceEEEEeeCChhhhh--
Q 038902 214 LLKFKIEE--EDELQRRATLAKRLRERTKKVLIILDDVREKIN------LAVSGIPYGE-ERKRCKVIVTSRRLDVCS-- 282 (997)
Q Consensus 214 ~l~~~~~~--~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~------~~~l~~~~~~-~~~gs~iivTtr~~~v~~-- 282 (997)
+++..... .+.......+.+.+...+++.+||+|+++.... +..+...+.. ...+..+|+||+......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 87654321 234445566666776545699999999977431 1222111111 233567788888664332
Q ss_pred ------cCCCeeEEcCCCCHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHhC---CchhHH-HHHHHHHc-----CCCc
Q 038902 283 ------KMSDVTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKACG---SLPNAI-AIVAGALR-----GKLA 345 (997)
Q Consensus 283 ------~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~i~~~~~---glPlai-~~~~~~l~-----~~~~ 345 (997)
.+....+.+++++.++..+++.+.+. .....-..+....+++.++ |.|..+ ..+..+.. +...
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 22225899999999999999987653 1112223456677777777 998743 33333221 1111
Q ss_pred ccchhhhhhhhHHHHHHHHHhccccccccCcccccceeeeecccchhhhhHHHhhhcc-CCCC-CccchhhHHHHhh--c
Q 038902 346 NESNESLVNIWNDAVEEVIRESRDIKIEEIPKEEFLGITIGYNELKMVAKGCLQFCCL-FPAY-RSVPIEDFVMHGL--V 421 (997)
Q Consensus 346 ~~~~~~~~~~w~~~l~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~-fp~~-~~i~~~~li~~w~--a 421 (997)
-+.+.++.++.. ... ..+.-.+..+|+..+..+..++. +-.+ ..+...++.+... +
T Consensus 260 -----i~~~~v~~a~~~-~~~--------------~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 260 -----VKEEYVYMAKEE-IER--------------DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp -----CCHHHHHHHHHH-HHH--------------HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHH-Hhh--------------chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 013455555544 211 12334456677777776665553 2211 2234443332211 1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038902 422 DRLFRDVDSMGGVLNKMQSIVEDLRNRKILSY 453 (997)
Q Consensus 422 ~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 453 (997)
+.+-....+. .....+++.|...++++.
T Consensus 320 ~~~g~~~~~~----~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 320 KKLGVEAVTQ----RRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHTCCCCCH----HHHHHHHHHHHHHTSEEE
T ss_pred HhcCCCCCCH----HHHHHHHHHHHhCCCEEE
Confidence 1100000111 223457999999999964
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.2e-11 Score=120.66 Aligned_cols=126 Identities=18% Similarity=0.340 Sum_probs=94.1
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChh-HhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCC
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPG-FFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTH 577 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~ 577 (997)
+.++++++.+..+|... .++++.|++++|.+..+++. .|..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56777777777777643 33788888888887777653 467788888888888888766 5677788888888888888
Q ss_pred ccCCC--cccccCcccEEEecCCccccc-CccccCCCCCcEEeccCCccCCC
Q 038902 578 LEKAP--LKKEFKELVILILRGSSIREL-PKGLERWINLKLLDLSNNIFLQG 626 (997)
Q Consensus 578 l~~lp--~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~ 626 (997)
++.++ .+..+++|++|++++|++..+ |..+..+++|++|++++|.....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 87765 477788888888888877765 56677788888888887764433
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.2e-11 Score=122.08 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=111.5
Q ss_pred hcCceEEEcccCCCcCCCCCCCCC-CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccc-cccccCCEEEc
Q 038902 496 LKEYKKISLMDSGINKLPDEPMCP-QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSI-ECLVKLRSLRA 573 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L 573 (997)
..+++.|++++|.+..++....+. +|+.|++++|.+..+ ..+..+++|++|++++|.++.+|..+ ..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 468999999999999887655554 999999999998887 45788999999999999999888655 89999999999
Q ss_pred CCCCccCCC---cccccCcccEEEecCCcccccCcc----ccCCCCCcEEeccCCc
Q 038902 574 ENTHLEKAP---LKKEFKELVILILRGSSIRELPKG----LERWINLKLLDLSNNI 622 (997)
Q Consensus 574 ~~~~l~~lp---~~~~l~~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~l~~~~ 622 (997)
++|.++.+| .+..+++|++|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999887 588999999999999999998875 8899999999999886
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=6.2e-11 Score=118.51 Aligned_cols=122 Identities=25% Similarity=0.405 Sum_probs=109.1
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l 578 (997)
+.++++++.+..+|... .++|+.|++++|.+..++ ..|..+++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56888888889998754 479999999999999887 56899999999999999999876 5689999999999999999
Q ss_pred cCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCcc
Q 038902 579 EKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIF 623 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 623 (997)
+.++ .+..+++|++|++++|.+..+|.. +..+++|++|++++|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9987 699999999999999999999864 78899999999999874
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=3.1e-12 Score=154.98 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEe
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILIL 595 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L 595 (997)
.+++|+.|+|++|.+..++...+ .+++|++|+|++|.++.+|..++.+.+|++|+|++|.++.+| .++++++|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 45566666666666655555443 566666666666666666666666666666666666666665 5666666666666
Q ss_pred cCCcccccCccccCCCCCcEEeccCCc
Q 038902 596 RGSSIRELPKGLERWINLKLLDLSNNI 622 (997)
Q Consensus 596 ~~~~l~~lp~~~~~l~~L~~L~l~~~~ 622 (997)
++|.+..+|..++.+++|++|++++|.
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCc
Confidence 666666666666666666666666665
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=5.6e-11 Score=117.31 Aligned_cols=125 Identities=24% Similarity=0.427 Sum_probs=91.0
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l 578 (997)
+.+++.++.+..+|.. ..++|+.|++++|.+..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4566777777777643 346788888888887777777777778888888888887776643 57778888888888877
Q ss_pred cCCC--cccccCcccEEEecCCcccccCcc-ccCCCCCcEEeccCCccCC
Q 038902 579 EKAP--LKKEFKELVILILRGSSIRELPKG-LERWINLKLLDLSNNIFLQ 625 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~ 625 (997)
+.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7776 367777888888888777777654 4567777888877776433
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=6.9e-12 Score=137.58 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=134.5
Q ss_pred CCChhhhcCceEEEcccCCCc-CCCCCC-CCCCccEEEccCCCCC--CCChhHhhcCccccEEEecCcccCCCCccccc-
Q 038902 490 GWPQEDLKEYKKISLMDSGIN-KLPDEP-MCPQLLTLFLQHNAFD--KIPPGFFEHMREINFLDLSYTNISTLPGSIEC- 564 (997)
Q Consensus 490 ~~~~~~~~~~~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~- 564 (997)
.++.....+++.|.+.++... .+.... .+++|++|++++|.+. ...... ++.++.+.+..+.+.. ..+..
T Consensus 18 ~l~~~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~~--~aF~~~ 92 (329)
T 3sb4_A 18 MMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVPA--YAFSNV 92 (329)
T ss_dssp GSCHHHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEECT--TTTEEE
T ss_pred hccchhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccCH--HHhccc
Confidence 444444667777777754210 010101 2677888888888766 222211 1223444444443221 23344
Q ss_pred -------cccCCEEEcCCCCccCCC--cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCc---cCCCCChHH
Q 038902 565 -------LVKLRSLRAENTHLEKAP--LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNI---FLQGIPPNI 631 (997)
Q Consensus 565 -------l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~---~~~~~~~~~ 631 (997)
|.+|+.|++.. .++.++ .|.++++|+.|++.+|.+..++ ..|..+.++..+...... ....+....
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 66666666666 555554 5666666666666666655553 334455555555443311 011122222
Q ss_pred hhcCCCCc--------------------------EEEeecCCCCcccccCCCCCCCChHhh-hCCCCCCEEEEEeccccc
Q 038902 632 ISKLCQLE--------------------------ELYIGNSFGNWELEETPNPKSAAFKEV-ASLSRLTVLYIHINSTEV 684 (997)
Q Consensus 632 l~~l~~L~--------------------------~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 684 (997)
+.++.+|+ .+.+.+.. .......+ ..+++|+.+++..|.+..
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-----------~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-----------DNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-----------CHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-----------cHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 33344443 33332211 00111112 136778888888777777
Q ss_pred cccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHHHhhcccc-ceecCCCCCCcccccccccCCCCccE
Q 038902 685 LSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVKLLLEKTE-DLTLTRSRDLEDIGAIEVQGLTALMT 763 (997)
Q Consensus 685 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~l~~L~~ 763 (997)
++...+..+++|+.+.+..+ . ..++...+..+++|+ .+.+.+ ++..++...|.+|++|+.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i----------------~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-L----------------KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-C----------------CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred ecHhhhhCCCCCCEEECCcc-c----------------ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 77777777777777766532 1 122233333355566 666633 456666666666777777
Q ss_pred EEEeccCCccccchhhHHHhcCCcEEe
Q 038902 764 MHLRACSLQRIFRSSFYARARNAEELN 790 (997)
Q Consensus 764 L~L~~~~l~~~~~~~~~~~l~~L~~L~ 790 (997)
|++.++.++.+ +...+.++++|+.++
T Consensus 302 l~l~~n~i~~I-~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTL-GDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEE-CTTTTCTTCCCCEEE
T ss_pred EEeCCCccCcc-chhhhcCCcchhhhc
Confidence 77766666655 333444555555554
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=2e-11 Score=148.00 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=99.9
Q ss_pred hcCceEEEcccCCCcCCCCCC-CCCCccEEE-----ccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCC
Q 038902 496 LKEYKKISLMDSGINKLPDEP-MCPQLLTLF-----LQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLR 569 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~~-~~~~L~~L~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~ 569 (997)
..+++++++.++.+...+... ...+|+.+. +..|.+. +++..+..+..|++|+|++|.+..+|..+..+.+|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 356788888877766655432 223333332 3333333 456678899999999999999999999999999999
Q ss_pred EEEcCCCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCC
Q 038902 570 SLRAENTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSF 647 (997)
Q Consensus 570 ~L~L~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 647 (997)
+|+|++|.++.+| .++++++|++|+|++|.+..+|..++.|++|++|+|++|. ++.+|.. ++.+++|++|++++|.
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 9999999999999 8999999999999999999999999999999999999997 6799988 8999999999998873
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=5.2e-11 Score=139.64 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=90.9
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCCcccccCcccEEEecCCc
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAPLKKEFKELVILILRGSS 599 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp~~~~l~~L~~L~L~~~~ 599 (997)
.|+.|++++|.+..++. +..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|.++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 47778888887777664 6778888888888888888888888888888888888888888888888888888888888
Q ss_pred cccc--CccccCCCCCcEEeccCCccCCCCCh---HHhhcCCCCcEEE
Q 038902 600 IREL--PKGLERWINLKLLDLSNNIFLQGIPP---NIISKLCQLEELY 642 (997)
Q Consensus 600 l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~ 642 (997)
+..+ |..+..+++|+.|++++|. +..+|+ ..+..+++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 8877 7778888888888888887 333332 1234466776664
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=1.8e-10 Score=120.47 Aligned_cols=201 Identities=11% Similarity=0.116 Sum_probs=121.3
Q ss_pred CCCCccccccccHHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHH
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~ 212 (997)
.......+++||+.+++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+.. . ....... ...+.
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~--~---~~~~~~~-~~~~~ 90 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--T---PCGVCDN-CREIE 90 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS--S---CCSCSHH-HHHHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C---CCcccHH-HHHHh
Confidence 344445579999999999999987654 458999999999999999999988754221110 0 0000000 00110
Q ss_pred HHhCC-----CCchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCChhhh-
Q 038902 213 ELLKF-----KIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLDVC- 281 (997)
Q Consensus 213 ~~l~~-----~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v~- 281 (997)
..... .............+.+.+.. .+++.+||+||++.. ..++.+...+.....+.++|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 00000011111112222111 246899999999764 34444544443445578899998765421
Q ss_pred hcC-C-CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 282 SKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 282 ~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
..+ . ...+++++++.++..+++.+.+......-..+....|++.++|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 1 2689999999999999998877532222234567889999999999988776544
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=5e-11 Score=119.24 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=90.9
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc--ccccccCCEEEcCCCCccCC-C-cccccCcccEEEecC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS--IECLVKLRSLRAENTHLEKA-P-LKKEFKELVILILRG 597 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~l~~l-p-~~~~l~~L~~L~L~~ 597 (997)
++++++++.+..+|... ..+|++|++++|.++.++.. ++.+++|++|++++|.++.+ | .+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888887777643 23788888888888877653 78888888888888888877 4 788888888888888
Q ss_pred CcccccCc-cccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 598 SSIRELPK-GLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 598 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|++..++. .+..+++|++|++++|. +..+++..++.+++|++|+++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 88887754 47788888888888887 34443333667777777777654
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=4.2e-10 Score=115.80 Aligned_cols=184 Identities=13% Similarity=0.175 Sum_probs=117.5
Q ss_pred CccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHHHHHHH
Q 038902 137 HSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 137 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~~i~~~ 214 (997)
....+++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++..... .+.. +.++.+.......+...+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHH
Confidence 3445789999999999999987766669999999999999999999886432 2222 334433333322222211111
Q ss_pred hCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCChhhh-hcC-C-CeeE
Q 038902 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRLDVC-SKM-S-DVTV 289 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~-~-~~~~ 289 (997)
..... .. .+++.+||+||++... ..+.+...+.....+.++|+||+..... ..+ . ...+
T Consensus 93 ~~~~~---------------~~-~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 93 ARTAP---------------IG-GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HTSCC---------------ST-TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcccC---------------CC-ccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 11000 00 1478999999997752 2333433333335577899998865321 111 1 1589
Q ss_pred EcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 290 QIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 290 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
.+.+++.++..+++.+.+......-..+....+++.++|.|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998877422212234567788999999998655443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.5e-12 Score=131.20 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=66.7
Q ss_pred HhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC-cccccCcccEEEecCCcccccCccccCCCCCcEE
Q 038902 538 FFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP-LKKEFKELVILILRGSSIRELPKGLERWINLKLL 616 (997)
Q Consensus 538 ~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 616 (997)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4566666677777666666666 5666666777776666666666 4555566666666666666655 46666666666
Q ss_pred eccCCccCCCCCh-HHhhcCCCCcEEEeecC
Q 038902 617 DLSNNIFLQGIPP-NIISKLCQLEELYIGNS 646 (997)
Q Consensus 617 ~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 646 (997)
++++|. +..++. ..+..+++|++|++++|
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 666665 444433 22556666666666554
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=2.4e-10 Score=112.76 Aligned_cols=122 Identities=22% Similarity=0.462 Sum_probs=95.4
Q ss_pred ccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCCC--cccccCcccEEEecC
Q 038902 521 LLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRG 597 (997)
Q Consensus 521 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~ 597 (997)
.+.++++++.+..++... .++|+.|++++|.++.+|. .++.+++|++|++++|.++.+| .+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888888777543 4688889999888887765 4578888999999888888876 468888888888888
Q ss_pred CcccccCcc-ccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecC
Q 038902 598 SSIRELPKG-LERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 598 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|+++++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 888887654 5788888888888886 56777665667777777777665
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=5.6e-10 Score=124.94 Aligned_cols=241 Identities=14% Similarity=0.115 Sum_probs=150.7
Q ss_pred CCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCc-cccccccCCEEEcCCCCccCCC--cccccCcccEEE
Q 038902 518 CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPG-SIECLVKLRSLRAENTHLEKAP--LKKEFKELVILI 594 (997)
Q Consensus 518 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~ 594 (997)
+..++.+.+..+ +..+...+|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++.++ .+.++.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 455666666543 556666667664 6777777655 555543 3444 3677777775 555554 677778888888
Q ss_pred ecCCcccccCccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCE
Q 038902 595 LRGSSIRELPKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTV 674 (997)
Q Consensus 595 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 674 (997)
+.+|++..+|.....+.+|+.+.+..+ +..++...+.++++|+++.+..+... ++ ...+.. ++|+.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~--I~---------~~aF~~-~~L~~ 252 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST--IG---------QEAFRE-SGITT 252 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE--EC---------TTTTTT-CCCSE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC--cc---------cccccc-CCccE
Confidence 877777777766555678888887744 56677666777888888887653211 11 112333 57777
Q ss_pred EEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCc-ccchHHHHHhhccccceecCCCCCCcccccc
Q 038902 675 LYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNIS-TPLADWVKLLLEKTEDLTLTRSRDLEDIGAI 753 (997)
Q Consensus 675 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 753 (997)
+.+ .+.+..++...+..|++|+.+.+.++... ... ..++...+..+++|+.+.|. .++..++..
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~------------~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~ 317 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN------------DDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQG 317 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC------------CCTTCEECTTTTTTCTTCCEECCC--TTCCEECTT
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCcccc------------CCcccEECHHHhhCCccCCeEEeC--CceEEEhhh
Confidence 777 34466677777777788888877654431 000 12233333446677777773 346677777
Q ss_pred cccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeeccc
Q 038902 754 EVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCY 795 (997)
Q Consensus 754 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 795 (997)
.|.+|++|+.+.|.++ ++.+ +...+.++ +|+.+.+.++.
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEECCSS
T ss_pred hhcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEcCCC
Confidence 7777888888888544 4444 33445566 78888887653
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.5e-12 Score=129.69 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=115.9
Q ss_pred CceEEEcccC--CCcCCCCCC-CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCccccccccCCEEEcC
Q 038902 498 EYKKISLMDS--GINKLPDEP-MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAE 574 (997)
Q Consensus 498 ~~~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 574 (997)
.++...+.+. .+..+|... .+++|++|++++|.+..++ .+..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3445555533 344554433 7899999999999988876 5788999999999999999999988889999999999
Q ss_pred CCCccCCCcccccCcccEEEecCCcccccCc--cccCCCCCcEEeccCCccCCCCC---------hHHhhcCCCCcEEE
Q 038902 575 NTHLEKAPLKKEFKELVILILRGSSIRELPK--GLERWINLKLLDLSNNIFLQGIP---------PNIISKLCQLEELY 642 (997)
Q Consensus 575 ~~~l~~lp~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L~ 642 (997)
+|.++.+|.+..+++|++|++++|.+..+|. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999889999999999999999998764 78899999999999997433222 12356777787776
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=4.4e-10 Score=123.14 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=39.9
Q ss_pred CCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCC
Q 038902 518 CPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAEN 575 (997)
Q Consensus 518 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~ 575 (997)
|++|+.|.+.+ .+..++..+|.+|++|+.|+++++.+..++ ..+..+.++.++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77888888877 677777777788888888888877776553 4456666666666554
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.3e-09 Score=106.87 Aligned_cols=98 Identities=24% Similarity=0.395 Sum_probs=63.0
Q ss_pred cEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCccCCC--cccccCcccEEEecCC
Q 038902 522 LTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGS 598 (997)
Q Consensus 522 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~ 598 (997)
+.++++++.+..+|..+ .++|++|++++|.++.+ |..+..+++|++|+|++|.++.+| .+.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666665555432 25666666666666655 445666666777777777666665 3466677777777777
Q ss_pred cccccCcc-ccCCCCCcEEeccCCc
Q 038902 599 SIRELPKG-LERWINLKLLDLSNNI 622 (997)
Q Consensus 599 ~l~~lp~~-~~~l~~L~~L~l~~~~ 622 (997)
.+..+|.. +..+++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 77666654 6667777777777766
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2.3e-09 Score=117.17 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=119.0
Q ss_pred CCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCceEEEEEccCCCHHHHHHHHH
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHDKAHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~wv~v~~~~~~~~~~~~i~ 212 (997)
++.....+++|++..++.+.+++..+....+.|+|++|+||||+|+.+++...... .+..++++.+.......+ ++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 44445568999999999999999877665699999999999999999999864321 111244443332222222 1111
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCChh-hhhcCC--Ce
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLD-VCSKMS--DV 287 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~--~~ 287 (997)
..+.... ..+. .+++.+||+||++.. ..++.+...+.....++++|+||+... +...+. ..
T Consensus 94 ~~~~~~~-------------~~~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKK-------------LHLP-PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBC-------------CCCC-TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcc-------------ccCC-CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 1110000 0000 136899999999874 234444333333345678888887643 212111 16
Q ss_pred eEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHHHH
Q 038902 288 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVAGA 339 (997)
Q Consensus 288 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~ 339 (997)
.+++.+++.++..+++...+......-.++....|++.++|.|. |+..+...
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999998876422212224567889999999995 45555443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.9e-09 Score=119.13 Aligned_cols=256 Identities=14% Similarity=0.182 Sum_probs=181.8
Q ss_pred cCceEEEcccCCCcCCCCCC--CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEc
Q 038902 497 KEYKKISLMDSGINKLPDEP--MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRA 573 (997)
Q Consensus 497 ~~~~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L 573 (997)
..+..+.+.++ +..++... .+ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .++.++ ..+..|.+|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34455555533 34444332 44 7999998776 778888888875 699999986 666664 56888999999999
Q ss_pred CCCCccCCC-cccccCcccEEEecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcc
Q 038902 574 ENTHLEKAP-LKKEFKELVILILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWE 651 (997)
Q Consensus 574 ~~~~l~~lp-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 651 (997)
.+|.++.++ ....+.+|+.+.+..+ +..++ ..|.++++|+.+++..+ +..++...+.+ .+|+.+.+.++...
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~-- 261 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTN-- 261 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCCE--
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCccE--
Confidence 999999887 3334689999999854 77764 56778999999999875 56777776777 78999998654211
Q ss_pred cccCCCCCCCChHhhhCCCCCCEEEEEecccc-----ccccccCCCCCCccEEEEEecCccccccccceEEeecCcccch
Q 038902 652 LEETPNPKSAAFKEVASLSRLTVLYIHINSTE-----VLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLA 726 (997)
Q Consensus 652 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~ 726 (997)
-....+..|++|+.+.+..+... .++...+..|++|+.+.+..+ . ..++
T Consensus 262 ---------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i----------------~~I~ 315 (401)
T 4fdw_A 262 ---------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I----------------RILG 315 (401)
T ss_dssp ---------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C----------------CEEC
T ss_pred ---------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e----------------EEEh
Confidence 11235788999999999877554 577777888888888876521 1 1223
Q ss_pred HHHHHhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHh-cCCcEEeeec
Q 038902 727 DWVKLLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARA-RNAEELNVEY 793 (997)
Q Consensus 727 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~l~~ 793 (997)
...+..+.+|+.+.|. .++..++...|.++ +|+.|++.++.+..+.+.. +.++ .++..|++..
T Consensus 316 ~~aF~~c~~L~~l~lp--~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIP--ANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTTTCCSCCEEEEC--TTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSS-CCCSCTTCCEEEECG
T ss_pred hhhhcCCCCccEEEEC--ccccEEcHHhCCCC-CCCEEEEcCCCCccccccc-ccCCCCCccEEEeCH
Confidence 3333446788888882 23777777889999 9999999998866654433 3445 4778888864
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.7e-09 Score=105.91 Aligned_cols=103 Identities=19% Similarity=0.365 Sum_probs=54.2
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l 578 (997)
+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 34555555555555433 25555555555555555555555555555555555555555443 34555555555555555
Q ss_pred cCCC--cccccCcccEEEecCCccccc
Q 038902 579 EKAP--LKKEFKELVILILRGSSIREL 603 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~~l 603 (997)
+.+| .+..+++|++|++++|.+...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 5554 255555555555555554433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=2.5e-09 Score=104.37 Aligned_cols=99 Identities=24% Similarity=0.386 Sum_probs=62.0
Q ss_pred ccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCC-CccccccccCCEEEcCCCCccCCC--cccccCcccEEEecC
Q 038902 521 LLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTL-PGSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRG 597 (997)
Q Consensus 521 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~ 597 (997)
.+++++++|.+..++... .++|++|++++|.++.+ |..+..+.+|++|++++|.++.+| .+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345566666655555432 25566666666666655 445666666666666666666665 356666677777777
Q ss_pred CcccccCcc-ccCCCCCcEEeccCCc
Q 038902 598 SSIRELPKG-LERWINLKLLDLSNNI 622 (997)
Q Consensus 598 ~~l~~lp~~-~~~l~~L~~L~l~~~~ 622 (997)
|++..+|.. +..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 766666543 6667777777777765
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=2e-09 Score=104.99 Aligned_cols=101 Identities=21% Similarity=0.401 Sum_probs=52.1
Q ss_pred eEEEcccCCCcCCCCCCCCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCCcc-ccccccCCEEEcCCCCc
Q 038902 500 KKISLMDSGINKLPDEPMCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLPGS-IECLVKLRSLRAENTHL 578 (997)
Q Consensus 500 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~l 578 (997)
+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 34555555555555432 24555555555555555555555555555555555555544432 34555555555555555
Q ss_pred cCCC--cccccCcccEEEecCCccc
Q 038902 579 EKAP--LKKEFKELVILILRGSSIR 601 (997)
Q Consensus 579 ~~lp--~~~~l~~L~~L~L~~~~l~ 601 (997)
+.+| .+.++++|++|++++|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5554 3455555555555555443
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.91 E-value=6.3e-09 Score=113.71 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=110.5
Q ss_pred CCCccccccccHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHH
Q 038902 135 DIHSVSDLTHSSKALNSIMKLLKD-----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 135 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~ 209 (997)
+.....+++|++..++.+..++.. .....+.|+|++|+|||++|+.+++... ...++++.+......++..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~----~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG----VNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----CCEEEECTTTCCSHHHHHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----CCEEEEeccccCChHHHHH
Confidence 334556899999999988887742 3446789999999999999999998763 2224554433322222221
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEccccccc--cccccccccCC------------------CCCc
Q 038902 210 KIAELLKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKI--NLAVSGIPYGE------------------ERKR 268 (997)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~--~~~~l~~~~~~------------------~~~g 268 (997)
.+.. ..++.+|++||+.... ....+...+.. ..++
T Consensus 83 ------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 83 ------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111 1256678888886542 11111100000 0123
Q ss_pred eEEEEeeCChh-hhhcCCC---eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHc
Q 038902 269 CKVIVTSRRLD-VCSKMSD---VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGALR 341 (997)
Q Consensus 269 s~iivTtr~~~-v~~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 341 (997)
.++|.||.... +...+.. ..+.+.+++.++..+++.+.+......-..+....+++.+.|.|-.+..+...+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 46777776442 2111111 4899999999999999988775333233346778899999999988877665553
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=2.6e-09 Score=117.03 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=120.3
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~ 212 (997)
+++.....+++|++..++.+..++..+....+.|+|++|+||||+|+.+++..... .+...++.+... +...
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~-~~~~------ 89 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNAS-DERG------ 89 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETT-CHHH------
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeecc-ccCc------
Confidence 34555566899999999999999987776679999999999999999999986432 112222332211 1100
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHh----cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCChhh-hhcCC
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRE----RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLDV-CSKMS 285 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~~ 285 (997)
.......+.+.... .+++.++|+||++.. ..++.+...+.....+.++|+||+...- ...+.
T Consensus 90 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 90 -----------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp -----------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 00001111111111 147889999999875 2334443333333457789988876532 11111
Q ss_pred --CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 038902 286 --DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVAGAL 340 (997)
Q Consensus 286 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 340 (997)
...+.+.+++.++..+++.+.+......-..+....|++.++|.|..+..+....
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1588999999999999998877543333344577889999999998665544433
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2.3e-08 Score=106.25 Aligned_cols=167 Identities=10% Similarity=0.116 Sum_probs=107.4
Q ss_pred ccccHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC------CCceEEEEEccCCCHHHHHHHH
Q 038902 142 LTHSSKALNSIMKLLK----DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA------PHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 142 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~wv~v~~~~~~~~~~~~i 211 (997)
+.||++|+++|...+. ++....+-|+|++|+|||++|+.++++..... .|..+.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 7799999999987763 46778999999999999999999999986532 3445788877888899999999
Q ss_pred HHHhCCCCc-hhhHHHHHHHHHHHH-HhcCCcEEEEEccccccccccccccccC--CC-CCceEEEEeeCChh-------
Q 038902 212 AELLKFKIE-EEDELQRRATLAKRL-RERTKKVLIILDDVREKINLAVSGIPYG--EE-RKRCKVIVTSRRLD------- 279 (997)
Q Consensus 212 ~~~l~~~~~-~~~~~~~~~~l~~~l-~~~~k~~LlvlDdv~~~~~~~~l~~~~~--~~-~~gs~iivTtr~~~------- 279 (997)
++++..... ..........+.+.+ ...+++++++||+++...+-+.+...+. .. .....||.++...+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 999954311 111112222222222 1135789999999977542222221111 11 11223444444322
Q ss_pred --hhhcCCCeeEEcCCCCHHHHHHHHHHHcC
Q 038902 280 --VCSKMSDVTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 280 --v~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
+..++....+.+++++.++-.+++++++.
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 22344446799999999999999988764
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=1.1e-08 Score=115.10 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=28.3
Q ss_pred ccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeee
Q 038902 734 EKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVE 792 (997)
Q Consensus 734 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~ 792 (997)
.+|+.+.+. ..+..++...|..+..|+.+.+..+.. .+ ....+..+..++.+...
T Consensus 230 ~~l~~i~ip--~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i-~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 230 TGVKNIIIP--DSFTELGKSVFYGCTDLESISIQNNKL-RI-GGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCCCEEEEC--TTCCEECSSTTTTCSSCCEEEECCTTC-EE-CSCTTTTCTTCCEEEEC
T ss_pred CCCceEEEC--CCceecccccccccccceeEEcCCCcc-ee-eccccccccccceeccC
Confidence 445555552 123444555666777788887765542 22 22234445555555443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.2e-08 Score=111.21 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=136.0
Q ss_pred CCCCccEEEccCCCCCCCChhHhhcCccccEEEecCcccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEE
Q 038902 517 MCPQLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVIL 593 (997)
Q Consensus 517 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L 593 (997)
.|++|+.+.+..+ +..+...+|.++.+|+.+++..+ ++.++ ..+..+.+|+.+.+..+ +..+. .+.++..+...
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 6777777777543 66677777777777887777644 44443 34566666666655433 22211 22222222211
Q ss_pred EecCCccccc-CccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCC---
Q 038902 594 ILRGSSIREL-PKGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASL--- 669 (997)
Q Consensus 594 ~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l--- 669 (997)
.... +..+ ...+..+.+|+.+.+..+ ...++.+.+..+++|+.+.+..+... + .-..+..+
T Consensus 146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~--I---------~~~~F~~~~~L 210 (394)
T 4fs7_A 146 IPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI--I---------RDYCFAECILL 210 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE--E---------CTTTTTTCTTC
T ss_pred cCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE--e---------Cchhhcccccc
Confidence 1111 1111 123444455555554432 23334333444455554444322100 0 00112223
Q ss_pred -------------------CCCCEEEEEeccccccccccCCCCCCccEEEEEecCccccccccceEEeecCcccchHHHH
Q 038902 670 -------------------SRLTVLYIHINSTEVLSKQFDGPWGNLKRFRVQVNDDYWEIASTRSMHLKNISTPLADWVK 730 (997)
Q Consensus 670 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 730 (997)
.+|+.+.+... ...+....+..+..|+.+.+.. ....++....
T Consensus 211 ~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~-----------------~~~~i~~~~F 272 (394)
T 4fs7_A 211 ENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN-----------------NKLRIGGSLF 272 (394)
T ss_dssp CBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC-----------------TTCEECSCTT
T ss_pred ceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC-----------------Ccceeecccc
Confidence 34444444321 2223333334444455444432 2211111122
Q ss_pred HhhccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhh
Q 038902 731 LLLEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEE 810 (997)
Q Consensus 731 ~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 810 (997)
..+.+++.+.+.. ..++...|..+.+|+.+.+.++ ++.+ +...+.++.+|+.++|... ++.+.. .
T Consensus 273 ~~~~~l~~~~~~~----~~i~~~~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~~-------~ 337 (394)
T 4fs7_A 273 YNCSGLKKVIYGS----VIVPEKTFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPYL--VEEIGK-------R 337 (394)
T ss_dssp TTCTTCCEEEECS----SEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCTT--CCEECT-------T
T ss_pred ccccccceeccCc----eeeccccccccccccccccccc-ccee-chhhhcCCCCCCEEEeCCc--ccEEhH-------H
Confidence 2234444444421 1133345667788888888654 4443 3445667788888887532 444421 2
Q ss_pred hhccccccceeecCCccCcceecccCCCcccCCCccEEEEee
Q 038902 811 EQAGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKE 852 (997)
Q Consensus 811 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 852 (997)
....+.+|+.+.+.. +++.+.. ..+..|++|+.+.+.+
T Consensus 338 aF~~c~~L~~i~lp~--~l~~I~~--~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SFRGCTSLSNINFPL--SLRKIGA--NAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECT--TTBTTCTTCCEEEEEG
T ss_pred hccCCCCCCEEEECc--cccEehH--HHhhCCCCCCEEEECC
Confidence 345677888888854 3666543 2345788888888865
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=1e-07 Score=103.72 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=118.0
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHH---HH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLR---RI 207 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~---~~ 207 (997)
+++.....+++|++..++.+.+++..+....+.++|++|+|||++|+.+++..... .+.. +.++.+...... +.
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHK 88 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTT-CHHHHCEEEETTSTTCTTTSSHH
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCC-cccCCeEEEeCccccChHHHHHH
Confidence 34445566899999999999999987766669999999999999999999986321 1222 444443321111 11
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCChh-hhhcC
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLD-VCSKM 284 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~ 284 (997)
......... +. .+++.++|+|+++.. ...+.+...+.....+.++|+||.... +...+
T Consensus 89 ~~~~~~~~~------------------~~-~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 89 IKEFARTAP------------------IG-GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp HHHHHHSCC------------------SS-SCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred HHHHHhcCC------------------CC-CCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 111110000 00 146889999999765 223444444444445778888887653 22211
Q ss_pred C--CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 285 S--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 285 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
. ...+.+.+++.++..+++.+.+......-..+....+++.++|.+-.+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1689999999999999998877533323334567788899999887654433
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=2.8e-07 Score=102.70 Aligned_cols=199 Identities=11% Similarity=0.117 Sum_probs=114.9
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
+++.....+++||+..++.+..++..+. ...+.|+|+.|+||||+|+.+++.......+.. ..+..-.-...+
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~------~~~~~~~~~~~~ 82 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNCREI 82 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS------SCCSSSHHHHHH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC------CCCcccHHHHHH
Confidence 3444555689999999999999987654 457899999999999999999988753221100 000000000111
Q ss_pred HHHhCCC-----CchhhHHHHHHHHHHHHHh---cCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCChh-h
Q 038902 212 AELLKFK-----IEEEDELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRLD-V 280 (997)
Q Consensus 212 ~~~l~~~-----~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v 280 (997)
...-..+ ............+.+.+.. .+++.+||+||++.. ...+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1000000 0000000011112222221 246789999999764 233444333333345677787776543 2
Q ss_pred hhcCC--CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHHH
Q 038902 281 CSKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIVA 337 (997)
Q Consensus 281 ~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 337 (997)
...+. ...+++.+++.++..+++.+.+......-..+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11111 1789999999999999998766421112223467789999999998776554
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=1.2e-07 Score=94.54 Aligned_cols=151 Identities=14% Similarity=0.178 Sum_probs=88.5
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC------CCceEEEEEccCCCHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA------PHDKAHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~wv~v~~~~~~~~~~~~i~ 212 (997)
...++||+.+++++.+++.....+.+.|+|++|+|||++|+.+++...... ....+++++.. +
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----- 89 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L----- 89 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H-----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H-----
Confidence 347899999999999999877677889999999999999999999875421 11124443321 1
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc---------cccccccccCCCCCceEEEEeeCChhhh--
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEERKRCKVIVTSRRLDVC-- 281 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v~-- 281 (997)
................+.+.+...+++.+||+||++... .+..+...+.. ..+..+|.||......
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 90 --VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQY 166 (195)
T ss_dssp --HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHH
T ss_pred --hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHH
Confidence 100111111122223333333333578899999997652 11111111111 2234577777655422
Q ss_pred ----hcCC-C-eeEEcCCCCHHHHHHHH
Q 038902 282 ----SKMS-D-VTVQIEELGEEDRLKLF 303 (997)
Q Consensus 282 ----~~~~-~-~~~~l~~L~~~~~~~lf 303 (997)
..+. . ..+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1111 1 46889999988876553
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=5.5e-09 Score=115.67 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=56.9
Q ss_pred ccccEEEecCcccCC--CCccccccccCCEEEcCCCCccCCC--cc-----cccCcccEEEecCCcccc-----cCcccc
Q 038902 543 REINFLDLSYTNIST--LPGSIECLVKLRSLRAENTHLEKAP--LK-----KEFKELVILILRGSSIRE-----LPKGLE 608 (997)
Q Consensus 543 ~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~l~~lp--~~-----~~l~~L~~L~L~~~~l~~-----lp~~~~ 608 (997)
++|+.|+|++|.++. +......+.+|++|+|++|.++... .+ ...++|++|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554431 1111123344555555555444321 11 123445555555554432 333344
Q ss_pred CCCCCcEEeccCCccCCCCC----hHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEecccc
Q 038902 609 RWINLKLLDLSNNIFLQGIP----PNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINSTE 683 (997)
Q Consensus 609 ~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 683 (997)
.+++|++|++++|. ++... ...+...++|++|++++|..... ........+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~------g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT------AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55555555555554 22111 01133445555555554421000 00011223444556666666666543
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.1e-07 Score=104.80 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=51.1
Q ss_pred EEccCC-CCCCCChhHhhcCccccEEEecC-cccCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEEEecCC
Q 038902 524 LFLQHN-AFDKIPPGFFEHMREINFLDLSY-TNISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVILILRGS 598 (997)
Q Consensus 524 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~ 598 (997)
++++++ .+..+|. +..+.+|+.|+|++ |.++.+| ..++.+.+|++|+|++|.++.++ .+.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4554444 45555555555553 5555444 34555555555555555555543 4455555555555555
Q ss_pred cccccCccccCCCCCcEEeccCCc
Q 038902 599 SIRELPKGLERWINLKLLDLSNNI 622 (997)
Q Consensus 599 ~l~~lp~~~~~l~~L~~L~l~~~~ 622 (997)
++..+|..+....+|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 555555443333335566655554
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.5e-07 Score=103.76 Aligned_cols=98 Identities=23% Similarity=0.243 Sum_probs=85.1
Q ss_pred cEEEecCc-ccCCCCccccccccCCEEEcCC-CCccCCC--cccccCcccEEEecCCcccccCc-cccCCCCCcEEeccC
Q 038902 546 NFLDLSYT-NISTLPGSIECLVKLRSLRAEN-THLEKAP--LKKEFKELVILILRGSSIRELPK-GLERWINLKLLDLSN 620 (997)
Q Consensus 546 ~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~-~~l~~lp--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 620 (997)
..++++++ .++.+|. +..+.+|++|+|++ |.++.+| .++++++|++|+|++|++..+|. .|.+|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999999 99999999999996 9999987 69999999999999999998864 678999999999999
Q ss_pred CccCCCCChHHhhcCCCCcEEEeecC
Q 038902 621 NIFLQGIPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 621 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 646 (997)
|. +..+|...+..++ |+.|++.++
T Consensus 90 N~-l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SC-CSCCCSTTTCSCC-CCEEECCSS
T ss_pred Cc-cceeCHHHcccCC-ceEEEeeCC
Confidence 98 6788877555555 999998765
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.52 E-value=4.4e-06 Score=88.27 Aligned_cols=194 Identities=14% Similarity=0.220 Sum_probs=107.9
Q ss_pred cccccHHHHHHHHH-------Hhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 141 DLTHSSKALNSIMK-------LLK---DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 141 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
.++|+...++++++ .+. ....+.+.|+|++|+|||++|+.+++... ...+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~-------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKM-------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGC--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHh--------
Confidence 56777666665555 332 34567899999999999999999999743 233334333210
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-----------c-ccccccccC---CCCCceEEEEee
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI-----------N-LAVSGIPYG---EERKRCKVIVTS 275 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-----------~-~~~l~~~~~---~~~~gs~iivTt 275 (997)
.+. ...........+.+... ..+..+|++||++... . ...+...+. .......||.||
T Consensus 102 ----~g~--~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 ----IGF--SETAKCQAMKKIFDDAY-KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp ----TTC--CHHHHHHHHHHHHHHHH-TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred ----cCC--chHHHHHHHHHHHHHHH-hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 111 00011111111111111 1378999999997631 0 111211111 123355678888
Q ss_pred CChhhhhc--C-C--CeeEEcCCCCH-HHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC------chhHHHHHHHHHcCC
Q 038902 276 RRLDVCSK--M-S--DVTVQIEELGE-EDRLKLFKQIARLPDSEAFEGAAKVIVKACGS------LPNAIAIVAGALRGK 343 (997)
Q Consensus 276 r~~~v~~~--~-~--~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g------lPlai~~~~~~l~~~ 343 (997)
........ . . ...+.+++++. ++...++.+.. .. ..+....|++.+.| ++-++..+-.+-...
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-NF----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-CS----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-CC----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 87754332 1 1 16789999998 66666665532 11 23456778888887 555555555544333
Q ss_pred CcccchhhhhhhhHHHHHHHHHhc
Q 038902 344 LANESNESLVNIWNDAVEEVIRES 367 (997)
Q Consensus 344 ~~~~~~~~~~~~w~~~l~~~l~~~ 367 (997)
.. ..++.+++. +...
T Consensus 250 ~~--------~~~~~~~~~-l~~~ 264 (272)
T 1d2n_A 250 PE--------YRVRKFLAL-LREE 264 (272)
T ss_dssp GG--------GHHHHHHHH-HHHT
T ss_pred hH--------HHHHHHHHH-HHHc
Confidence 33 667777776 5543
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=5.4e-07 Score=99.58 Aligned_cols=198 Identities=10% Similarity=0.142 Sum_probs=117.7
Q ss_pred hcCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhh--CCCceEEEEEccCCCHHHHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTI--APHDKAHVIVAESSDLRRIQD 209 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~wv~v~~~~~~~~~~~ 209 (997)
++++...+.+++|++..++.+..++..+....+.|+|++|+||||+|+.+++..... ..+..+.++.+.......+..
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE 108 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH
Confidence 344555566899999999999999987765569999999999999999999886431 223334444443323322221
Q ss_pred HHHHHhC-CCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCChh-hhhcCC
Q 038902 210 KIAELLK-FKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRLD-VCSKMS 285 (997)
Q Consensus 210 ~i~~~l~-~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~ 285 (997)
...... ......... .......+++-+|++|+++... ....+...+.......++|++|.... +...+.
T Consensus 109 -~~~~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 109 -KVKNFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp -HHHHHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 111110 000000000 0001111356799999987642 22333332322334567777776443 222111
Q ss_pred C--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 286 D--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 286 ~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
. ..+.+.+++.++....+.+.+......-.++....|++.++|.|-.+..+
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 58899999999999999887643322233457788999999998765443
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=1.9e-07 Score=96.90 Aligned_cols=171 Identities=17% Similarity=0.216 Sum_probs=104.1
Q ss_pred ccccccc---HHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHh
Q 038902 139 VSDLTHS---SKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 139 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
+.+|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... .+...+++.+...+. +..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~------~~~-- 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASI------STA-- 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGS------CGG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHH------HHH--
Confidence 3466653 4666777777666567889999999999999999999987653 344477766432110 000
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----ccccccccCC--CCCceEEEEeeCChh---------h
Q 038902 216 KFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----LAVSGIPYGE--ERKRCKVIVTSRRLD---------V 280 (997)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----~~~l~~~~~~--~~~gs~iivTtr~~~---------v 280 (997)
..+.+ .++.+||+||++.... .+.+...+.. .....++|+||+... +
T Consensus 98 ---------------~~~~~---~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 98 ---------------LLEGL---EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---------------GGTTG---GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---------------HHHhc---cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00011 2667899999976522 1222211110 011225777776432 2
Q ss_pred hhcCCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 281 CSKMSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 281 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
..++.. ..+.+++++.++..+++.+.+......-..+....+++.++|.+-.+..+
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 222221 58999999999999999887642222223456778889999987665543
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=8.1e-08 Score=92.00 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCcchhhhhcCCCCCCcccccccCCCCCC-cCCCccEEEEccccc
Q 038902 843 ENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCDRLEEIVSSDEPEEKPEAAVSNIPPPP-IFQNLQKLIISKCHK 921 (997)
Q Consensus 843 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~L~~L~l~~c~~ 921 (997)
..|++|++++|. +++.. ...+..+++|++|++++|..+++ .++..+.... ..++|++|+|++|++
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD------------~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIED------------GCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCH------------HHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCH------------HHHHHHHhcccccCCCCEEEcCCCCc
Confidence 357888888886 66542 23346666677777777766655 2222221110 124566666666666
Q ss_pred cccccchhHHhhhcccceEEeecccccce
Q 038902 922 MKSVFSLTIVKGLKELKELNIVGCNEMER 950 (997)
Q Consensus 922 L~~l~~~~~~~~l~~L~~L~i~~C~~L~~ 950 (997)
+++-... .+.++++|++|+|++|+++++
T Consensus 127 ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 127 VTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 6653332 234566666666666666664
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=1.5e-06 Score=97.59 Aligned_cols=296 Identities=9% Similarity=0.136 Sum_probs=138.2
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcc---cCCCC-ccccccccCCEEEcCCCCccCCC--cccccCcccEE
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTN---ISTLP-GSIECLVKLRSLRAENTHLEKAP--LKKEFKELVIL 593 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~lp-~~l~~l~~L~~L~L~~~~l~~lp--~~~~l~~L~~L 593 (997)
.|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.++ ..+..|.+|+.+.+..+ ++.++ .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4666666443 555556666666666666665542 33332 34455666665555433 33333 45556666666
Q ss_pred EecCCcccccC-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCC
Q 038902 594 ILRGSSIRELP-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRL 672 (997)
Q Consensus 594 ~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 672 (997)
.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+. ..+|+.+.+....... ....+..+.++
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~i-----------~~~af~~c~~l 207 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTRI-----------GTNAFSECFAL 207 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCEE-----------CTTTTTTCTTC
T ss_pred cccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccccc-----------ccchhhhcccc
Confidence 66532 22232 33455666666666543 3344443332 2456665553321100 01112333344
Q ss_pred CEEEEEeccccccccccC-------------CCCCCccEEEEEe------cCccccccccceEEeecCcccchHHHHHhh
Q 038902 673 TVLYIHINSTEVLSKQFD-------------GPWGNLKRFRVQV------NDDYWEIASTRSMHLKNISTPLADWVKLLL 733 (997)
Q Consensus 673 ~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 733 (997)
................+. .....+..+.+.. .........|+.+.+......+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c 287 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNC 287 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTC
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccc
Confidence 433332211110000000 0011111221110 000113344444444333333333333445
Q ss_pred ccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhc
Q 038902 734 EKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQA 813 (997)
Q Consensus 734 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 813 (997)
++|+.+.+. ..+..++...|.+|.+|+.+.|.++ ++.+ ....+.+|.+|+.+.|... ++.+.. ....
T Consensus 288 ~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s--v~~I~~-------~aF~ 354 (394)
T 4gt6_A 288 PALQDIEFS--SRITELPESVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS--VTKIPE-------SAFS 354 (394)
T ss_dssp TTCCEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT--CCBCCG-------GGGT
T ss_pred cccccccCC--CcccccCceeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc--cCEEhH-------hHhh
Confidence 677777772 3466677777888888888888654 4444 3445667888888888532 333321 2456
Q ss_pred cccccceeecCCccCcceecccCCCcccCCCccEEEEe
Q 038902 814 GLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVK 851 (997)
Q Consensus 814 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 851 (997)
.+++|+.+.+.+.. .. +. ....+.+|+.+.+.
T Consensus 355 ~C~~L~~i~~~~~~--~~-~~---~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 355 NCTALNNIEYSGSR--SQ-WN---AISTDSGLQNLPVA 386 (394)
T ss_dssp TCTTCCEEEESSCH--HH-HH---TCBCCCCC------
T ss_pred CCCCCCEEEECCce--ee-hh---hhhccCCCCEEEeC
Confidence 77888888887642 11 11 22345666666654
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=4.6e-08 Score=93.74 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=53.0
Q ss_pred ccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCccCChHHHHh----hcCCceEeecCCcchhhhhcCCCCC
Q 038902 817 KLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNIFSKTLALK----LGKLEQLSFQKCDRLEEIVSSDEPE 892 (997)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~ 892 (997)
.|+.|++++|. ++.. +......+++|++|++++|..+++... ..+.. +++|++|++++|+++++
T Consensus 62 ~L~~LDLs~~~-Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD-------- 129 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI--GFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTD-------- 129 (176)
T ss_dssp CEEEEEEESCC-CCGG--GGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCH--------
T ss_pred eEeEEeCcCCC-ccHH--HHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCH--------
Confidence 57777777765 4432 223334677777777777777766421 11222 34677777777777766
Q ss_pred CcccccccCCCCCCcCCCccEEEEcccccccc
Q 038902 893 EKPEAAVSNIPPPPIFQNLQKLIISKCHKMKS 924 (997)
Q Consensus 893 ~~~~~~l~~l~~~~~~~~L~~L~l~~c~~L~~ 924 (997)
.++..+ ..+++|++|+|++|+.+++
T Consensus 130 ----~Gl~~L---~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 ----KGIIAL---HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----HHHHHG---GGCTTCCEEEEESCTTCCC
T ss_pred ----HHHHHH---hcCCCCCEEECCCCCCCCc
Confidence 233332 3467777777777777765
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.44 E-value=3.4e-06 Score=92.35 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=107.8
Q ss_pred hcCCCCccccccccHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLLKD-----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
++.+...+.+++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.... ..+.++.+.......
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~----~~~~~~~~~~~~~~~ 96 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA----NIKTTAAPMIEKSGD 96 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC----CEEEEEGGGCCSHHH
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC----CeEEecchhccchhH
Confidence 344555666899999999999888853 34567899999999999999999887532 223343332221111
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccC------------------CCC
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYG------------------EER 266 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~------------------~~~ 266 (997)
+...+....+..+|++|++.... ....+...+. ...
T Consensus 97 ------------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 97 ------------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ------------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ------------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 11222222367788889887641 1111111110 011
Q ss_pred CceEEEEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 267 KRCKVIVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 267 ~gs~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
++.++|.||.... +..++ ...+.+++++.++...++.+.+......-..+....+++.+.|.|-.+..+
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 2356777776533 22222 258999999999999999887753333334556788888999998555433
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.1e-06 Score=97.22 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=109.4
Q ss_pred hcCCCCccccccccHHHHHHHHHHh-ccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceE----------------
Q 038902 132 ASRDIHSVSDLTHSSKALNSIMKLL-KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKA---------------- 194 (997)
Q Consensus 132 ~~~~~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~---------------- 194 (997)
++++...+.+++|++..++.+.+++ ..+....+.|+|+.|+||||+|+.++........ ..+
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~-g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV-YRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTC-CC-----------------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCC-CeEEecceeecccccccce
Confidence 3455566678999999999999988 6665555999999999999999999986422110 001
Q ss_pred --------EEEEccC--C-CHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccc
Q 038902 195 --------HVIVAES--S-DLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIP 261 (997)
Q Consensus 195 --------wv~v~~~--~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~ 261 (997)
++.+... . ......++++..+.....-.... .+ ..+. +++-++|+|++...+. .+.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~l-s~l~--~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD----SK-DGLA--HRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred eeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccc----cc-cccC--CCCeEEEEeCccccCHHHHHHHHHH
Confidence 1111100 0 00001222222221110000000 00 0012 2677999999976421 2223222
Q ss_pred cCCCCCceEEEEeeCChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhh-HHHHHHHHHHhCCchhHHHHH
Q 038902 262 YGEERKRCKVIVTSRRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAF-EGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 262 ~~~~~~gs~iivTtr~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~-~~~~~~i~~~~~glPlai~~~ 336 (997)
+.....+..+|++|.+.. +...+.. ..+++++++.++..+.+.+.+......-. ++....|++.++|.+-.+..+
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 222234677887776532 2222211 78999999999999999887642221112 346778899999987655433
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=7.1e-07 Score=103.40 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=112.4
Q ss_pred CCCCccccccccHHHHHHHHHHhcc-----------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEE
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKD-----------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHV 196 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv 196 (997)
++.....+++|++..++++.+|+.. +..+.+.|+|++|+||||+|+.+++... +..+.+
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~i 108 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQ 108 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEE
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEE
Confidence 4445566899999999999999864 1347899999999999999999998762 334555
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-----ccccccccCCCCCceEE
Q 038902 197 IVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-----LAVSGIPYGEERKRCKV 271 (997)
Q Consensus 197 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-----~~~l~~~~~~~~~gs~i 271 (997)
+.+...... +....+........... ......+.+...+++.+|++|+++.... +..+...+.. .+..|
T Consensus 109 n~s~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 109 NASDVRSKT-LLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp CTTSCCCHH-HHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred eCCCcchHH-HHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 555544433 22222221110000000 0000000111124789999999976522 1222111111 23346
Q ss_pred EEeeCChh--hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC-chhHHHHHHHH
Q 038902 272 IVTSRRLD--VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS-LPNAIAIVAGA 339 (997)
Q Consensus 272 ivTtr~~~--v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~ 339 (997)
|+++.+.. ....... ..+.+++++.++..+.+.+.+......-.++....|++.++| ++-|+..+...
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 66655432 1112222 689999999999999888776421111122356788999999 55666665443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.37 E-value=6.4e-06 Score=92.77 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=108.8
Q ss_pred HhcCCCCccccccccHHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC-CCHHH
Q 038902 131 MASRDIHSVSDLTHSSKAL---NSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES-SDLRR 206 (997)
Q Consensus 131 ~~~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~-~~~~~ 206 (997)
.++.+...+.+++|++..+ ..+...+..+....+.|+|++|+||||+|+.+++.... . ++.++.. .....
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~----f~~l~a~~~~~~~ 90 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--D----VERISAVTSGVKE 90 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--E----EEEEETTTCCHHH
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--C----eEEEEeccCCHHH
Confidence 4445566677899999988 78888888787888999999999999999999987642 1 2222221 12222
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEE-eeCChh--hh
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIV-TSRRLD--VC 281 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-Ttr~~~--v~ 281 (997)
+ +.+. ........ .+++.+|++|+++.. ...+.+...+.. + ...+|. ||.+.. +.
T Consensus 91 i-r~~~----------------~~a~~~~~-~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 91 I-REAI----------------ERARQNRN-AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELN 150 (447)
T ss_dssp H-HHHH----------------HHHHHHHH-TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSC
T ss_pred H-HHHH----------------HHHHHhhh-cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccC
Confidence 1 1111 11111111 248899999999765 233444333322 2 234444 444432 11
Q ss_pred hcC-CC-eeEEcCCCCHHHHHHHHHHHcCC-------CCChhhHHHHHHHHHHhCCchhHHH
Q 038902 282 SKM-SD-VTVQIEELGEEDRLKLFKQIARL-------PDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 282 ~~~-~~-~~~~l~~L~~~~~~~lf~~~~~~-------~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
..+ .. .++.+++++.++...++.+.+.. ....-.++....+++.++|.+-.+.
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 111 11 68899999999999999887642 2222345577888888999775544
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.36 E-value=1.3e-05 Score=88.03 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=108.0
Q ss_pred CCCCccccccccHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLK------------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES 201 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~ 201 (997)
.......+++|.+..++.+.+++. ....+.|.|+|++|+|||++|+.+++... ...+.++.+.-
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l 153 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSL 153 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGG
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHh
Confidence 333445579999999999888773 23467899999999999999999998753 22255554432
Q ss_pred CCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccC----C
Q 038902 202 SDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYG----E 264 (997)
Q Consensus 202 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~----~ 264 (997)
... .... .......+...... .++.+|+||+++.... ...+...+. .
T Consensus 154 ~~~--------------~~g~-~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 154 TSK--------------WVGE-GEKMVRALFAVARC-QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp CCS--------------STTH-HHHHHHHHHHHHHH-TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred hcc--------------ccch-HHHHHHHHHHHHHh-cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 210 0001 11112222222222 4789999999964311 111211111 1
Q ss_pred CCCceEEEEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC-chhHHHHHHH
Q 038902 265 ERKRCKVIVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS-LPNAIAIVAG 338 (997)
Q Consensus 265 ~~~gs~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 338 (997)
...+..||.||.... +..++. ..+.++..+.++..+++...+......-..+....|++.+.| .+-.+..+..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLV-KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 123456676776542 222221 577889999999989888776432222224567788899988 5555665544
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=6.2e-08 Score=107.19 Aligned_cols=151 Identities=15% Similarity=0.070 Sum_probs=108.9
Q ss_pred hcCceEEEcccCCCcCCCCC-------CCCCCccEEEccCCCCCCCChh-HhhcCccccEEEecCcccCCC-----Cccc
Q 038902 496 LKEYKKISLMDSGINKLPDE-------PMCPQLLTLFLQHNAFDKIPPG-FFEHMREINFLDLSYTNISTL-----PGSI 562 (997)
Q Consensus 496 ~~~~~~L~l~~~~~~~l~~~-------~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-----p~~l 562 (997)
...++.|+++++.+...... ..+++|+.|++++|.+...... ....+++|+.|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888776542211 1347999999999987653332 234567899999999998732 2222
Q ss_pred -cccccCCEEEcCCCCccC-----CC-cccccCcccEEEecCCccc-----ccCccccCCCCCcEEeccCCccCCCCCh-
Q 038902 563 -ECLVKLRSLRAENTHLEK-----AP-LKKEFKELVILILRGSSIR-----ELPKGLERWINLKLLDLSNNIFLQGIPP- 629 (997)
Q Consensus 563 -~~l~~L~~L~L~~~~l~~-----lp-~~~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~- 629 (997)
...++|++|+|++|.++. ++ .+..+++|++|+|++|.+. .++..+...++|++|++++|. ++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH
Confidence 346889999999998875 23 4577899999999999876 345667788899999999997 333221
Q ss_pred ---HHhhcCCCCcEEEeecCC
Q 038902 630 ---NIISKLCQLEELYIGNSF 647 (997)
Q Consensus 630 ---~~l~~l~~L~~L~l~~~~ 647 (997)
..+...++|++|++++|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 114567999999998873
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=3.3e-06 Score=91.23 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=89.1
Q ss_pred cccccHHHHHHHHHHhc---------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCH
Q 038902 141 DLTHSSKALNSIMKLLK---------------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDL 204 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~ 204 (997)
+++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++.......... -++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58999988888876553 234457999999999999999999998765332222 33443311
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc-----------ccccccccccCCCCCceEEEE
Q 038902 205 RRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK-----------INLAVSGIPYGEERKRCKVIV 273 (997)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iiv 273 (997)
.+.......... .+...+.. .+.-+|++|+++.. .....+...+.....+..||.
T Consensus 109 ---------~l~~~~~g~~~~----~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQYIGHTAP----KTKEVLKR-AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSSTTCHHH----HHHHHHHH-HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------HhhhhcccccHH----HHHHHHHh-cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 011111111111 12222222 14459999999843 122333333333344667888
Q ss_pred eeCChh----------hhhcCCCeeEEcCCCCHHHHHHHHHHHcC
Q 038902 274 TSRRLD----------VCSKMSDVTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 274 Ttr~~~----------v~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
||.... +..++. ..+.+++++.++-.+++.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHH
Confidence 886432 222221 6889999999999999887764
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=5e-06 Score=93.20 Aligned_cols=304 Identities=12% Similarity=0.143 Sum_probs=190.8
Q ss_pred CCCCChhHhhcCc-cccEEEecCcccCCCC-ccccccccCCEEEcCCC---CccCCC--cccccCcccEEEecCCccccc
Q 038902 531 FDKIPPGFFEHMR-EINFLDLSYTNISTLP-GSIECLVKLRSLRAENT---HLEKAP--LKKEFKELVILILRGSSIREL 603 (997)
Q Consensus 531 ~~~~~~~~~~~l~-~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~---~l~~lp--~~~~l~~L~~L~L~~~~l~~l 603 (997)
.+.+...+|.+++ .|+.+.+..+ ++.+. ..+.+|.+|+.+.+..+ .++.+. .+..+.+|+.+.+..+ +..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4456667788775 5999999764 55553 56889999999999876 366665 7778888888877654 4555
Q ss_pred C-ccccCCCCCcEEeccCCccCCCCChHHhhcCCCCcEEEeecCCCCcccccCCCCCCCChHhhhCCCCCCEEEEEeccc
Q 038902 604 P-KGLERWINLKLLDLSNNIFLQGIPPNIISKLCQLEELYIGNSFGNWELEETPNPKSAAFKEVASLSRLTVLYIHINST 682 (997)
Q Consensus 604 p-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 682 (997)
+ ..+..+.+|+.+.+... ...++...+..+.+|+.+.+..+... ++ -..+. ..+|+.+.+..+ .
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~--I~---------~~aF~-~~~l~~i~ip~~-~ 193 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTA--IE---------ERAFT-GTALTQIHIPAK-V 193 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE--EC---------TTTTT-TCCCSEEEECTT-C
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccceeeE--ec---------ccccc-ccceeEEEECCc-c
Confidence 4 45678899999998754 45666666888999999988654211 11 01122 246888877543 3
Q ss_pred cccccccCCCCCCccEEEEEecCccc------cccccceEEeecCcccchHHHHHhhccccceecCCCCCCccccccccc
Q 038902 683 EVLSKQFDGPWGNLKRFRVQVNDDYW------EIASTRSMHLKNISTPLADWVKLLLEKTEDLTLTRSRDLEDIGAIEVQ 756 (997)
Q Consensus 683 ~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 756 (997)
..+....+..+.++............ .........+.... ....+..+.+ ...+..++...|.
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i--p~~v~~i~~~aF~ 262 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP---------SQREDPAFKI--PNGVARIETHAFD 262 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC---------TTCCCSEEEC--CTTEEEECTTTTT
T ss_pred cccccchhhhccccceecccccccccccceeecccccccccccccc---------cccccceEEc--CCcceEcccceee
Confidence 33445556667777777665432200 00000000000000 0122233333 1235556667788
Q ss_pred CCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhhccccccceeecCCccCcceecccC
Q 038902 757 GLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQAGLRKLRELILEGLPKLLTIWKGN 836 (997)
Q Consensus 757 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (997)
++.+|+.+.+.+.. ..+ ....+.++++|+.+.+.. .++.+.. .....+++|+.+.|.. +++.+..
T Consensus 263 ~c~~L~~i~lp~~~-~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~-- 327 (394)
T 4gt6_A 263 SCAYLASVKMPDSV-VSI-GTGAFMNCPALQDIEFSS--RITELPE-------SVFAGCISLKSIDIPE--GITQILD-- 327 (394)
T ss_dssp TCSSCCEEECCTTC-CEE-CTTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEECCT--TCCEECT--
T ss_pred ecccccEEeccccc-cee-cCcccccccccccccCCC--cccccCc-------eeecCCCCcCEEEeCC--cccEehH--
Confidence 88999999986554 222 344566788899888853 3444431 2456678899999864 4666643
Q ss_pred CCcccCCCccEEEEeecCCCCccCChHHHHhhcCCceEeecCCc
Q 038902 837 HSKAHVENLEIMRVKECGKLKNIFSKTLALKLGKLEQLSFQKCD 880 (997)
Q Consensus 837 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 880 (997)
..+..|.+|+.+.|-+ +++.+ ....+.+|++|+.+.+.+..
T Consensus 328 ~aF~~C~~L~~i~ip~--sv~~I-~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS--SVTKI-PESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECT--TCCBC-CGGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECc--ccCEE-hHhHhhCCCCCCEEEECCce
Confidence 3345789999999964 56666 34667889999999998743
No 183
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=1.1e-05 Score=85.90 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=102.1
Q ss_pred cccccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 139 VSDLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
..+++|.+..+++|.+++.. ...+.+.|+|++|+|||++|+.+++.... ..+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~----~~~~v~~~~~~~-- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA----TFIRVVGSELVK-- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC----EEEEEEGGGGCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehHHHHH--
Confidence 44789999999998887732 34567999999999999999999987532 123333322111
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc----------------cccccccccC--CCCC
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EERK 267 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~ 267 (997)
.... ........+...... .++.+|++||++... .+..+...+. ....
T Consensus 90 ------------~~~~-~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 ------------KFIG-EGASLVKDIFKLAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CSTT-HHHHHHHHHHHHHHH-TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------hccc-hHHHHHHHHHHHHHH-cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 0111 111122222233332 367899999996531 0111111111 2234
Q ss_pred ceEEEEeeCChhhhh-----cCCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCC-chhHHH
Q 038902 268 RCKVIVTSRRLDVCS-----KMSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS-LPNAIA 334 (997)
Q Consensus 268 gs~iivTtr~~~v~~-----~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~ 334 (997)
+..||.||+..+... ...- ..+.++..+.++..++++..+....... ......+++.+.| .|-.+.
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-DVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCCHHHHHHHCTTCCHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-cCCHHHHHHHcCCCCHHHHH
Confidence 677888887553322 1112 5799999999999999988875322111 1124567777777 443444
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.27 E-value=2.7e-05 Score=84.25 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=106.1
Q ss_pred cccccccHHHHHHHHHHhc----------c--CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 139 VSDLTHSSKALNSIMKLLK----------D--DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
..+++|.+..++.|.+++. . ...+-+.++|++|+|||++|+++++.... ..+.++.+ .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~----~~~~v~~~------~ 86 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS----TFFSVSSS------D 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC----EEEEEEHH------H
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC----CEEEEchH------H
Confidence 3478999999999888772 1 12467899999999999999999987632 12333321 1
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------cccccccc---CCCCCceE
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPY---GEERKRCK 270 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~---~~~~~gs~ 270 (997)
+ .. .... ........+.+.... .++.+|++|+++.... ...+...+ .....+..
T Consensus 87 l----~~----~~~g-~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VS----KWMG-ESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HT----TTGG-GHHHHHHHHHHHHHH-TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hh----cccc-hHHHHHHHHHHHHHh-cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 11 1011 112222233333333 4778999999975421 11111111 12344567
Q ss_pred EEEeeCChhh-----hhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHH
Q 038902 271 VIVTSRRLDV-----CSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVA 337 (997)
Q Consensus 271 iivTtr~~~v-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 337 (997)
||.||+.... ..++. ..+.++..+.++-.++++..+..............|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccC-eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7778876432 22222 5778889999999999998886443322344567888888884 54555443
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=8.4e-06 Score=90.46 Aligned_cols=191 Identities=13% Similarity=0.189 Sum_probs=103.4
Q ss_pred cccccccHHHHHH---HHHHhccCCc--eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc----CCCHHHHHH
Q 038902 139 VSDLTHSSKALNS---IMKLLKDDKV--NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE----SSDLRRIQD 209 (997)
Q Consensus 139 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~----~~~~~~~~~ 209 (997)
..+++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++....... .+.+.... .........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP--FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC--EEEEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC--cccccchhhhhcccchhHHHH
Confidence 3478999988766 4555555433 58999999999999999999998763212 22333221 223333333
Q ss_pred HHHHHh-CCC----------------------------Cc-----hhhHHHHHHHHHHHHHhcCC----cEEEEEccccc
Q 038902 210 KIAELL-KFK----------------------------IE-----EEDELQRRATLAKRLRERTK----KVLIILDDVRE 251 (997)
Q Consensus 210 ~i~~~l-~~~----------------------------~~-----~~~~~~~~~~l~~~l~~~~k----~~LlvlDdv~~ 251 (997)
+..... +.. .. ..................++ +.+|++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 333221 100 00 00111111122222222233 35999999986
Q ss_pred cc--cccccccccCCCCCceEEEEeeCC-----------------hhhhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCC
Q 038902 252 KI--NLAVSGIPYGEERKRCKVIVTSRR-----------------LDVCSKMSDVTVQIEELGEEDRLKLFKQIARLPDS 312 (997)
Q Consensus 252 ~~--~~~~l~~~~~~~~~gs~iivTtr~-----------------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 312 (997)
.. ....+...+.... ...++++|.. +.+..++ ..+.+++++.++..+++.+.+.....
T Consensus 201 l~~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL--LIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTE--EEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhhc--cEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 52 2222222222222 2234444431 1222222 56899999999999999887753332
Q ss_pred hhhHHHHHHHHHHhC-CchhHHH
Q 038902 313 EAFEGAAKVIVKACG-SLPNAIA 334 (997)
Q Consensus 313 ~~~~~~~~~i~~~~~-glPlai~ 334 (997)
.-.++....|++.+. |.|-.+.
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHH
Confidence 334456778888887 7665443
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=6.8e-06 Score=89.94 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=108.3
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce--EEEEEccCCCHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK--AHVIVAESSDLRRIQDK 210 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~--~wv~v~~~~~~~~~~~~ 210 (997)
+++...+.+++|.+..++.|..++..++...+.++|+.|+||||+|+.+++..... .+.. .-++.+.......+.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-- 94 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-- 94 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH--
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH--
Confidence 45566667889999999999998887766569999999999999999999986431 1221 222222221221111
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCCceEEEEeeCChh-hhhc
Q 038902 211 IAELLKFKIEEEDELQRRATLAKRLRE----RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTSRRLD-VCSK 283 (997)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~ 283 (997)
..+...... .+.+-++|+|+++... ..+.+...+.......++|++|.... +...
T Consensus 95 ------------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 95 ------------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp ------------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ------------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 111111111 1247889999987542 22223222222234567777776542 2111
Q ss_pred CC--CeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhH
Q 038902 284 MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 284 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPla 332 (997)
.. ...+.+.+++.++..+.+.+.+....-.-.++..+.|++.++|.+--
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 11 15789999999999888877663222222344677888888987753
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=3.8e-06 Score=94.93 Aligned_cols=178 Identities=15% Similarity=0.218 Sum_probs=103.7
Q ss_pred ccc-cc--HHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhC-CCceEEEEEccCCCHHHHHHHHHHHh
Q 038902 141 DLT-HS--SKALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIA-PHDKAHVIVAESSDLRRIQDKIAELL 215 (997)
Q Consensus 141 ~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~wv~v~~~~~~~~~~~~i~~~l 215 (997)
.|+ |. ......+..+....+ ...+.|+|++|+||||||+.+++...... ....++++.. .+..++...+
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~ 179 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSM 179 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHH
Confidence 555 53 334455555554433 67899999999999999999999876532 2222555433 3344444443
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----ccccccccCC-CCCceEEEEeeCCh---------hhh
Q 038902 216 KFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----LAVSGIPYGE-ERKRCKVIVTSRRL---------DVC 281 (997)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtr~~---------~v~ 281 (997)
.... ...+.+.+.. +.-+|++||++.... .+.+...+.. ...|..||+||.+. .+.
T Consensus 180 ~~~~--------~~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 180 KEGK--------LNEFREKYRK--KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HTTC--------HHHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred Hccc--------HHHHHHHhcC--CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 2211 1122233332 667999999976532 1222222211 13466788888763 222
Q ss_pred hcCCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHH
Q 038902 282 SKMSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIA 334 (997)
Q Consensus 282 ~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 334 (997)
.++.. ..+.+++++.++-.+++.+.+......-.++....|++.+.|.+-.+.
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 23332 478899999999999998876411111112356778888999875443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.21 E-value=3.2e-05 Score=84.77 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=102.8
Q ss_pred ccccccccHHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 138 SVSDLTHSSKALNSIMKLLKD------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
...+++|.+..++.|.+.+.. ...+-|.++|++|+|||++|+++++.... ..+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~v~~~------ 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS----TFFSVSSS------ 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC----EEEEEEHH------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC----CEEEeeHH------
Confidence 344788999888888876621 12346889999999999999999998742 12333322
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------cccccccc---CCCCCce
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPY---GEERKRC 269 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~---~~~~~gs 269 (997)
++.. . ...... .....+...... .++.+|+||+++.... ...+...+ .....+.
T Consensus 119 ~l~~----~----~~g~~~-~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 DLVS----K----WMGESE-KLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HHHS----C----C---CH-HHHHHHHHHHHH-TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred HHhh----h----hcchHH-HHHHHHHHHHHH-cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1111 0 001111 112222222222 4789999999986421 11121111 1123456
Q ss_pred EEEEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHH
Q 038902 270 KVIVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVA 337 (997)
Q Consensus 270 ~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 337 (997)
.||.||.... +..++. ..+.++..+.++-.++++.++...+..........|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccC-EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6777776543 222221 5778899999999999988876433221234567788899884 44454443
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.19 E-value=2.9e-05 Score=83.80 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=103.3
Q ss_pred ccccccHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 140 SDLTHSSKALNSIMKLLK------------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
.+++|.+..++.|.+.+. ....+-|.++|++|+|||++|+++++.... ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~---- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVS---- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHh----
Confidence 367888888777776552 113468999999999999999999987621 1113344332211
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccC---CCCCceEE
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYG---EERKRCKV 271 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~---~~~~gs~i 271 (997)
....... .....+.+.... .++.+|++|+++.... ...+...+. ....+..|
T Consensus 85 ----------~~~g~~~-~~~~~lf~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 ----------KWLGESE-KLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------SSCCSCH-HHHHHHHHHHHH-TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhhHHH-HHHHHHHHHHHh-cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0001111 112222222222 4789999999976411 011111111 12345667
Q ss_pred EEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHHH
Q 038902 272 IVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVAG 338 (997)
Q Consensus 272 ivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~ 338 (997)
|.||.... +..++. ..+.++..+.++-.++++.++...+....+.....|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFE-KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcC-eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77776543 222221 5788888899999999988875433222344567888999887 444555543
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.17 E-value=6.6e-05 Score=78.65 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=96.5
Q ss_pred cccccHHHHHHHHHHh---cc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 141 DLTHSSKALNSIMKLL---KD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
+++|.+..++.+.+++ .. ...+-+.|+|++|+|||++|+.+++.... ..+.++.+.-.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~----~~~~~~~~~~~~----- 77 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV----PFLAMAGAEFVE----- 77 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----CEEEEETTTTSS-----
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEechHHHHh-----
Confidence 5778887776665543 21 23456889999999999999999987642 224444433211
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-------------c----ccccccccCC--CCCce
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI-------------N----LAVSGIPYGE--ERKRC 269 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-------------~----~~~l~~~~~~--~~~gs 269 (997)
.......... ..+.+.... ..+.+|++||++... . +..+...+.. ...+.
T Consensus 78 ---------~~~~~~~~~~-~~~~~~a~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 78 ---------VIGGLGAARV-RSLFKEARA-RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ---------SSTTHHHHHH-HHHHHHHHH-TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ---------hccChhHHHH-HHHHHHHHh-cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 0011111111 222222222 367999999997641 1 1111111111 22356
Q ss_pred EEEEeeCChhhhh-c-C---CC-eeEEcCCCCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCchh-HHHHH
Q 038902 270 KVIVTSRRLDVCS-K-M---SD-VTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLPN-AIAIV 336 (997)
Q Consensus 270 ~iivTtr~~~v~~-~-~---~~-~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~glPl-ai~~~ 336 (997)
.||.||....... . . .- ..+.++..+.++-.++++..+.... ..........+++.+.|.+- .+..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 7777776654221 1 1 11 5788999999999999988765222 22222234678888888754 44433
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.15 E-value=1e-05 Score=87.86 Aligned_cols=175 Identities=13% Similarity=0.192 Sum_probs=103.8
Q ss_pred cCCCCccccccccHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 133 SRDIHSVSDLTHSSKALNSIMKLLKDDKV-NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 133 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
+++...+.+++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++... .+.+.++.+.. ....+ +.+
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~~~~~-~~~~i-~~~ 92 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN----ADMMFVNGSDC-KIDFV-RGP 92 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEETTTC-CHHHH-HTH
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEccccc-CHHHH-HHH
Confidence 34555666899999999999999986654 5777888899999999999998763 22255554332 12211 111
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc---cccccccccCCCCCceEEEEeeCChh-hhhcC
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI---NLAVSGIPYGEERKRCKVIVTSRRLD-VCSKM 284 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~ 284 (997)
+.+.... .+++-+|++||++... ..+.+...+.....+.++|+||.... +...+
T Consensus 93 -------------------~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 93 -------------------LTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp -------------------HHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred -------------------HHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 1111111 1378899999997653 22333222222234568888887653 11111
Q ss_pred CC--eeEEcCCCCHHHHHHHH-------HHHcCCCCChhhH-HHHHHHHHHhCCchhH
Q 038902 285 SD--VTVQIEELGEEDRLKLF-------KQIARLPDSEAFE-GAAKVIVKACGSLPNA 332 (997)
Q Consensus 285 ~~--~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~-~~~~~i~~~~~glPla 332 (997)
.. ..+++++.+.++-.+++ .+.+......-.+ +....|++.++|.+-.
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 11 67999999988854333 2222211111112 5677788888886653
No 192
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.14 E-value=2.9e-05 Score=84.43 Aligned_cols=166 Identities=9% Similarity=0.097 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhhC--------------------CCceEEEEEc---c
Q 038902 145 SSKALNSIMKLLKDDK-VNIIGLQGPGGIGKSTLMEQLAKQIDTIA--------------------PHDKAHVIVA---E 200 (997)
Q Consensus 145 r~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~wv~v~---~ 200 (997)
.+...+.+...+..+. ...+.++|+.|+||||+|+.+++...... +++..++... .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 4556677777776665 45699999999999999999998864321 1333333221 1
Q ss_pred CCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh---cCCcEEEEEccccccc--cccccccccCCCCCceEEEEee
Q 038902 201 SSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEERKRCKVIVTS 275 (997)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 275 (997)
...+.++ ++ +.+.+.. .+++-++|+|+++... ..+.+...+.....++.+|++|
T Consensus 87 ~~~i~~i-r~--------------------l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 87 TLGVDAV-RE--------------------VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp SBCHHHH-HH--------------------HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCHHHH-HH--------------------HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 1111111 12 2222221 2467899999998752 2334433343334567777777
Q ss_pred CChh-hhhcCCC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHHH
Q 038902 276 RRLD-VCSKMSD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAIV 336 (997)
Q Consensus 276 r~~~-v~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 336 (997)
.+.+ +...+.. ..+++++++.++..+.+.+... -.++.+..+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6653 3332222 6899999999999999988761 12345577899999999766443
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.12 E-value=9.4e-06 Score=80.07 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=43.2
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...++||+.+++.+.+++.....+.+.|+|++|+||||+|+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999998776778899999999999999999998743
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.11 E-value=4.8e-05 Score=84.74 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=103.3
Q ss_pred ccccccccHHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 138 SVSDLTHSSKALNSIMKLLKD------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
.+.+++|++..++.+.+++.. ...+-|.|+|+.|+|||++|+.+++... ...+.++.+.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNISAASLTS-- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----CcEEEeeHHHhhc--
Confidence 344899999999999887721 2346899999999999999999988743 2224443332211
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------cccccccc---C-CCCCc
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPY---G-EERKR 268 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~---~-~~~~g 268 (997)
.. .+ .. ......+.+.... .++.+|+||+++.... ...+...+ . .....
T Consensus 187 ~~-------~g-----~~-~~~~~~~~~~a~~-~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 KY-------VG-----EG-EKLVRALFAVARE-LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -----------------C-HHHHHHHHHHHHH-SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred cc-------cc-----hH-HHHHHHHHHHHHh-cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 00 01 1112222223322 3668999999975410 01111111 1 11234
Q ss_pred eEEEEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHH
Q 038902 269 CKVIVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVA 337 (997)
Q Consensus 269 s~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 337 (997)
..||.||.... +..++. ..+.+...+.++-.+++...+......-..+....|++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56676776533 222221 468899999999999998887643333334567788999988543 555443
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=7.3e-05 Score=79.99 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=103.4
Q ss_pred CccccccccHHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCH
Q 038902 137 HSVSDLTHSSKALNSIMKLLKD------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDL 204 (997)
Q Consensus 137 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~ 204 (997)
....+++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~- 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA----TFLNISAASLTS- 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC----EEEEEESTTTSS-
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC----CeEEeeHHHHhh-
Confidence 3445899999999999887732 23578999999999999999999987532 114444332211
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccc-------------cccc---cccCC--CC
Q 038902 205 RRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINL-------------AVSG---IPYGE--ER 266 (997)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~-------------~~l~---~~~~~--~~ 266 (997)
.... ........+...... .++.+|++|+++....- ..+. ..++. .+
T Consensus 93 -------------~~~~-~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KYVG-DGEKLVRALFAVARH-MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SSCS-CHHHHHHHHHHHHHH-TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------cccc-hHHHHHHHHHHHHHH-cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0001 111122222222222 37889999999764110 0111 11111 12
Q ss_pred CceEEEEeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh-HHHHHH
Q 038902 267 KRCKVIVTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN-AIAIVA 337 (997)
Q Consensus 267 ~gs~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 337 (997)
.+..||.||...+ +..++. ..+.++..+.++...++...+......-..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777787643 222322 467778788888888887766432222223456788889999775 554443
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.09 E-value=2e-05 Score=85.59 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchh
Q 038902 145 SSKALNSIMKLLKDD--KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE 222 (997)
Q Consensus 145 r~~~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (997)
.......+..+.... ....+.|+|++|+||||||+.+++..... .+..++++.. .+...+...+...
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~------~~~~~~~~~~~~~---- 87 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSAD------DFAQAMVEHLKKG---- 87 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHH------HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHH------HHHHHHHHHHHcC----
Confidence 344455555555443 35688999999999999999999987653 2333565532 3333333332110
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEcccccccc---c-cccccccCC-CCCceEEEEeeCCh---------hhhhcCCC-e
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVREKIN---L-AVSGIPYGE-ERKRCKVIVTSRRL---------DVCSKMSD-V 287 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~-~ 287 (997)
....+.+.+. +.-+|++||+..... + ..+...+.. ...|.+||+||... .+..++.. .
T Consensus 88 ----~~~~~~~~~~---~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 88 ----TINEFRNMYK---SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp ----CHHHHHHHHH---TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred ----cHHHHHHHhc---CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 0112222233 567999999976532 1 122222210 12355788887643 12223333 5
Q ss_pred eEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchh
Q 038902 288 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPN 331 (997)
Q Consensus 288 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPl 331 (997)
.+++++ +.++..+++.+.+......-.++....|++.+ |.+-
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHH
Confidence 789999 99999999988774222222245667788888 7553
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=4.5e-06 Score=91.37 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=28.5
Q ss_pred hHhhcCccccEEEecCcccCCCCccccccccCCEEEcCCCCccCCC--cc--cccCcccEEEec
Q 038902 537 GFFEHMREINFLDLSYTNISTLPGSIECLVKLRSLRAENTHLEKAP--LK--KEFKELVILILR 596 (997)
Q Consensus 537 ~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~lp--~~--~~l~~L~~L~L~ 596 (997)
..+..+++|+.|+++++.-..++. + .+++|++|++..|.+..-. .+ ..+++|++|+|+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344555666666666552112332 2 2556666666655443211 22 245666666654
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00016 Score=81.82 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=102.6
Q ss_pred cccccccHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 139 VSDLTHSSKALNSIMKLLK------------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
..+++|.+..++.|.+.+. ....+-|.++|++|+|||+||+++++... ...++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~~---- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSD---- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC-----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHHH----
Confidence 3478999999988887762 12347899999999999999999998762 11233333221
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCC---CCCceE
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYGE---ERKRCK 270 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~gs~ 270 (997)
+.... .+.. .. ....+.+.... .++.+|++|+++.... ...+...+.. ...+..
T Consensus 204 l~~~~---~g~~--~~----~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 LVSKW---LGES--EK----LVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp -----------C--CC----THHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HHhhh---cchH--HH----HHHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11111 1111 00 11122222222 4789999999975410 0111111111 234567
Q ss_pred EEEeeCChhh-----hhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHHHH
Q 038902 271 VIVTSRRLDV-----CSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAIVA 337 (997)
Q Consensus 271 iivTtr~~~v-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 337 (997)
||.||..... ..++. ..+.++..+.++-..+|+.++...+..........|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFE-KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcc-eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7778875432 22221 5778888888888889988876433222234567888999884 44555444
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.91 E-value=5.4e-05 Score=86.23 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=83.2
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-C---Cce--EEEEEccCCCHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-P---HDK--AHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~--~wv~v~~~~~~~~~~~~i~ 212 (997)
+..++||+.+++.+++.+......-+.++|++|+|||++|+.+++...... + .+. +.++.+ .
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 347899999999999999766566778999999999999999999874311 0 112 333322 0
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhh------hhcCC-
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDV------CSKMS- 285 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v------~~~~~- 285 (997)
...+ ........+.+.+.. .++.+|++| ...+....+...+. ...-++|.+|..... ...+.
T Consensus 247 ~~~g------~~e~~~~~~~~~~~~-~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KYRG------EFEDRLKKVMDEIRQ-AGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp ------------CTTHHHHHHHHHT-CCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cccc------hHHHHHHHHHHHHHh-cCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0000 000111222233332 367899999 22222222322221 223466666654431 11111
Q ss_pred C-eeEEcCCCCHHHHHHHHHHHcC
Q 038902 286 D-VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 286 ~-~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
. ..+.++..+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 1 5799999999999999987654
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=9.4e-05 Score=82.29 Aligned_cols=86 Identities=7% Similarity=0.155 Sum_probs=48.2
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhh
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQ 812 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 812 (997)
+.+|+.+.+. .++..++...|.++++|+.+.+.++.++.+ +...+.++.+|+.+.|... ++.+.. ...
T Consensus 262 ~~~l~~i~l~--~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~~--l~~I~~-------~aF 329 (379)
T 4h09_A 262 CTALKTLNFY--AKVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLPTA--LKTIQV-------YAF 329 (379)
T ss_dssp CTTCCEEEEC--CCCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECCTT--CCEECT-------TTT
T ss_pred eehhcccccc--ccceecccccccccccccccccccccccee-hhhhhcCCCCCCEEEcCcc--ccEEHH-------HHh
Confidence 4556666552 235555556667777777777776666555 3344566777777777432 333321 134
Q ss_pred ccccccceeecCCccCccee
Q 038902 813 AGLRKLRELILEGLPKLLTI 832 (997)
Q Consensus 813 ~~~~~L~~L~l~~~~~l~~~ 832 (997)
..+++|+.+.+-. +++.+
T Consensus 330 ~~C~~L~~i~ip~--~v~~I 347 (379)
T 4h09_A 330 KNCKALSTISYPK--SITLI 347 (379)
T ss_dssp TTCTTCCCCCCCT--TCCEE
T ss_pred hCCCCCCEEEECC--ccCEE
Confidence 4566677766643 34444
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.88 E-value=0.00017 Score=80.12 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=72.6
Q ss_pred hccccceecCCCCCCcccccccccCCCCccEEEEeccCCccccchhhHHHhcCCcEEeeecccccceeeeccccchhhhh
Q 038902 733 LEKTEDLTLTRSRDLEDIGAIEVQGLTALMTMHLRACSLQRIFRSSFYARARNAEELNVEYCYSMKEVFCLEENEIEEEQ 812 (997)
Q Consensus 733 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 812 (997)
+.+|+.+.+. .++..++...|.++.+|+.+.+.+. +..+ +...+.++.+|+.+.+.++. ++.+.. ...
T Consensus 239 ~~~L~~i~lp--~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~-------~aF 306 (379)
T 4h09_A 239 MKALDEIAIP--KNVTSIGSFLLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSA-IETLEP-------RVF 306 (379)
T ss_dssp CSSCCEEEEC--TTCCEECTTTTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTT-CCEECT-------TTT
T ss_pred CccceEEEcC--CCccEeCccccceeehhcccccccc-ceec-cccccccccccccccccccc-cceehh-------hhh
Confidence 5677777772 2366777778888999999999654 4444 44557789999999986542 333321 245
Q ss_pred ccccccceeecCCccCcceecccCCCcccCCCccEEEEeecCCCCcc
Q 038902 813 AGLRKLRELILEGLPKLLTIWKGNHSKAHVENLEIMRVKECGKLKNI 859 (997)
Q Consensus 813 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 859 (997)
..+++|+.+.|.. +++.+.. ..+..|.+|+.+.|.. +++.+
T Consensus 307 ~~c~~L~~i~lp~--~l~~I~~--~aF~~C~~L~~i~ip~--~v~~I 347 (379)
T 4h09_A 307 MDCVKLSSVTLPT--ALKTIQV--YAFKNCKALSTISYPK--SITLI 347 (379)
T ss_dssp TTCTTCCEEECCT--TCCEECT--TTTTTCTTCCCCCCCT--TCCEE
T ss_pred cCCCCCCEEEcCc--cccEEHH--HHhhCCCCCCEEEECC--ccCEE
Confidence 6778899999864 4666543 3345778888887753 45554
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.86 E-value=2e-05 Score=77.34 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch
Q 038902 145 SSKALNSIMKLLKD---DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE 221 (997)
Q Consensus 145 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 221 (997)
+...++.+.+++.+ ...+.+.|+|++|+||||||+.+++.......+..++++ ..++...+..........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~ 92 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD------TKDLIFRLKHLMDEGKDT 92 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE------HHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHhcCchHH
Confidence 44445555555533 235789999999999999999999988643333334443 334444444333211110
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEccccc--ccccc--ccccccCC-CCCceEEEEeeCCh
Q 038902 222 EDELQRRATLAKRLRERTKKVLIILDDVRE--KINLA--VSGIPYGE-ERKRCKVIVTSRRL 278 (997)
Q Consensus 222 ~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~--~~~~~--~l~~~~~~-~~~gs~iivTtr~~ 278 (997)
.+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 93 --------~~~~~~~---~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 --------KFLKTVL---NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --------HHHHHHH---TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --------HHHHHhc---CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2223333 566899999973 23332 12111111 12456788888754
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.81 E-value=5.7e-05 Score=93.14 Aligned_cols=171 Identities=12% Similarity=0.178 Sum_probs=93.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC------CCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA------PHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
.++||+.++.++++.+.....+-+.++|++|+||||+|+.+++...... ....+.++.+.-. .
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----------~- 239 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----------A- 239 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh----------c-
Confidence 6899999999999999776666789999999999999999999874321 1112444332110 0
Q ss_pred hCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------cc---ccccccCCCCCceEEEEeeCChhh----
Q 038902 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------LA---VSGIPYGEERKRCKVIVTSRRLDV---- 280 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------~~---~l~~~~~~~~~gs~iivTtr~~~v---- 280 (997)
+... ..........+.+.+...+++.+|++|++..... ++ .+...+ . ..+-.+|.+|.....
T Consensus 240 -g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~~~~~ 315 (854)
T 1qvr_A 240 -GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEYREIE 315 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHHHHHT
T ss_pred -cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHHhhhc
Confidence 0000 0111222233333444324789999999976421 11 121111 1 123346655554322
Q ss_pred -hhcCCC--eeEEcCCCCHHHHHHHHHHHcC----CCCChhhHHHHHHHHHHh
Q 038902 281 -CSKMSD--VTVQIEELGEEDRLKLFKQIAR----LPDSEAFEGAAKVIVKAC 326 (997)
Q Consensus 281 -~~~~~~--~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~i~~~~ 326 (997)
...+.. ..+.+++.+.++..++++.... .....-.++....+++.+
T Consensus 316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 316 KDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp TCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred cCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 122222 5689999999999999875432 112222234455555555
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=1.1e-05 Score=79.53 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=27.5
Q ss_pred CCCccEEEccCC-CCCCCC----hhHhhcCccccEEEecCcccC-----CCCccccccccCCEEEcCCCCcc
Q 038902 518 CPQLLTLFLQHN-AFDKIP----PGFFEHMREINFLDLSYTNIS-----TLPGSIECLVKLRSLRAENTHLE 579 (997)
Q Consensus 518 ~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~l~ 579 (997)
++.|++|++++| .+.... ...+...++|++|+|++|.+. .+...+...++|++|+|++|.++
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 445555555555 433211 122333445555555555544 12233333444555555555444
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=1.9e-05 Score=74.24 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=62.9
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhh-hCCCceEEEEEccCCCHHHHHHHHHHHhCC
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDT-IAPHDKAHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
+++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++.... ...| + ++.+...+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~--v-~~~~~~~~~~------------ 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF--V-YRELTPDNAP------------ 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC--E-EEECCTTTSS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE--E-EECCCCCcch------------
Confidence 478999999888887742 23345789999999999999999876432 1122 4 6665433220
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCCceEEEEeeCC
Q 038902 218 KIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYGEERKRCKVIVTSRR 277 (997)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr~ 277 (997)
. ....+.. .+.-.|++|+++.... ...+...+.......+||.||..
T Consensus 67 -----~-------~~~~~~~-a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 67 -----Q-------LNDFIAL-AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----C-------HHHHHHH-HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----h-------hhcHHHH-cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0 0011111 1345789999976521 22222222223334578888764
No 206
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=1.2e-05 Score=83.23 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=40.2
Q ss_pred ccccCCEEEcCCCCccCCC----cccccCcccEEEecCCcccccCccccCCC--CCcEEeccCCccCCCCCh------HH
Q 038902 564 CLVKLRSLRAENTHLEKAP----LKKEFKELVILILRGSSIRELPKGLERWI--NLKLLDLSNNIFLQGIPP------NI 631 (997)
Q Consensus 564 ~l~~L~~L~L~~~~l~~lp----~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~------~~ 631 (997)
++++|++|+|++|.++.++ .+..+++|++|+|++|.+..+ ..+..+. +|+.|++++|.....+|. .+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3455555555555555433 223555555666655555544 2233333 666666666664443431 22
Q ss_pred hhcCCCCcEEE
Q 038902 632 ISKLCQLEELY 642 (997)
Q Consensus 632 l~~l~~L~~L~ 642 (997)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666666664
No 207
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=3.1e-05 Score=84.73 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=29.7
Q ss_pred ccCcccEEEecCCcccc-cCccc---cCCCCCcEEeccCCccCCC-----CChHHhhcCCCCcEEEeecC
Q 038902 586 EFKELVILILRGSSIRE-LPKGL---ERWINLKLLDLSNNIFLQG-----IPPNIISKLCQLEELYIGNS 646 (997)
Q Consensus 586 ~l~~L~~L~L~~~~l~~-lp~~~---~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~ 646 (997)
.+++|++|++++|.+.. .+..+ ..+++|++|+++.|. ++. ++.+ +..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCC
Confidence 45666666666665431 11111 245666666666654 222 1111 234566677766554
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=2.1e-05 Score=77.35 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=60.5
Q ss_pred hHhhcCccccEEEecCc-ccC-----CCCccccccccCCEEEcCCCCccC-----CC-cccccCcccEEEecCCcccc--
Q 038902 537 GFFEHMREINFLDLSYT-NIS-----TLPGSIECLVKLRSLRAENTHLEK-----AP-LKKEFKELVILILRGSSIRE-- 602 (997)
Q Consensus 537 ~~~~~l~~L~~L~l~~~-~i~-----~lp~~l~~l~~L~~L~L~~~~l~~-----lp-~~~~l~~L~~L~L~~~~l~~-- 602 (997)
..+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.+ +. .+...++|++|+|++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 45667888999999988 776 344556677888888888887764 22 44555778888888887662
Q ss_pred ---cCccccCCCCCcEEec--cCCc
Q 038902 603 ---LPKGLERWINLKLLDL--SNNI 622 (997)
Q Consensus 603 ---lp~~~~~l~~L~~L~l--~~~~ 622 (997)
+...+...++|++|++ ++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC
Confidence 4555666677777777 5555
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.65 E-value=0.00041 Score=74.57 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=37.9
Q ss_pred cccccHHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD--------------DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999998888876643 2346788999999999999999998773
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=0.00044 Score=75.07 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=96.1
Q ss_pred CCCCccccccccHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 134 RDIHSVSDLTHSSKALNSIMKLLKD-----DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 134 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
.+...+..++|++..++.+...+.. .....+.++|++|+||||||+.+++.... .| ....-+-.....++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--~~--~~~sg~~~~~~~~l- 93 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--NI--HVTSGPVLVKQGDM- 93 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--CE--EEEETTTCCSHHHH-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--CE--EEEechHhcCHHHH-
Confidence 3455566788988887777665542 24478999999999999999999998743 11 11111000111111
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCC--------C----------Cc
Q 038902 209 DKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEE--------R----------KR 268 (997)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~--------~----------~g 268 (997)
...+....++-++++|++.... ..+.+....... + +.
T Consensus 94 -----------------------~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 -----------------------AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp -----------------------HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred -----------------------HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 0111111134466778775431 111111000000 0 01
Q ss_pred eEEE-EeeCChhh----hhcCCCeeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 269 CKVI-VTSRRLDV----CSKMSDVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 269 s~ii-vTtr~~~v----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
..++ .|++...+ .+++. ..+.+++.+.++-.+++++.+.........+.+..|+++++|.|-.+..
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~-l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFG-IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 1222 34443322 22221 4689999999999999988764222233456788999999999965443
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.64 E-value=0.00024 Score=75.85 Aligned_cols=168 Identities=13% Similarity=0.177 Sum_probs=95.9
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
+++|.+..++++.+++.. ...+.|.|+|++|+|||++|+.+++.... ..+.++ ..++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~----~~i~v~------~~~l 85 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISIK------GPEL 85 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----EEEEEC------HHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC----CEEEEE------hHHH
Confidence 678888887777766532 34568999999999999999999987642 113332 2223
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs 269 (997)
.... .+... .. ...+.+.... ..+.+|++|+++.... ...+...+. ....+.
T Consensus 86 ~~~~---~g~~~-----~~-~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 86 LTMW---FGESE-----AN-VREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHH---HTTCT-----TH-HHHHHHHHHH-TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred Hhhh---cCchH-----HH-HHHHHHHHHh-cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 2221 12111 11 1122222222 3789999999975210 111111111 123456
Q ss_pred EEEEeeCChhhhh-c-CC--C--eeEEcCCCCHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhCCchhH
Q 038902 270 KVIVTSRRLDVCS-K-MS--D--VTVQIEELGEEDRLKLFKQIARLPD---SEAFEGAAKVIVKACGSLPNA 332 (997)
Q Consensus 270 ~iivTtr~~~v~~-~-~~--~--~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~i~~~~~glPla 332 (997)
.||.||...+... . .. . ..+.++..+.++-.++++....... ..+ ...+++.+.|.|-+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 7888887654222 1 11 2 6789999999998899887775222 122 23455667776543
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=0.00022 Score=86.83 Aligned_cols=147 Identities=17% Similarity=0.262 Sum_probs=83.6
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC-C---Cce--EEEEEccCCCHHHHHHHHH
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA-P---HDK--AHVIVAESSDLRRIQDKIA 212 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~--~wv~v~~~~~~~~~~~~i~ 212 (997)
+..++||+.+++++.+.+......-+.++|++|+|||++|+.+++...... + .+. +.++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 337899999999999999776666788999999999999999999863311 1 122 22222
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhh------hhcCC-
Q 038902 213 ELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDV------CSKMS- 285 (997)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v------~~~~~- 285 (997)
+...... .......+.+.... .++.+|++|. ..+....+...+ . ....++|.||..... ...+.
T Consensus 245 ---g~~~~G~-~e~~l~~~~~~~~~-~~~~iLfiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ---GTKYRGE-FEDRLKKVMDEIRQ-AGNIILFIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp ------------CTTHHHHHHHHHT-CCCCEEEECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ---cccccch-HHHHHHHHHHHHHh-cCCEEEEEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 1000000 00111122222222 4788999992 222222222222 1 224566766665441 11111
Q ss_pred C-eeEEcCCCCHHHHHHHHHHHcC
Q 038902 286 D-VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 286 ~-~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
. ..+.++..+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1 6799999999999999986654
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0017 Score=70.60 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=97.8
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+.- ...+-|.++||+|+|||.||+++++.... ..+.+..+.-.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~----- 219 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGAELV----- 219 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGGGGS-----
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhHHhh-----
Confidence 677888888777665521 23567899999999999999999998753 22444443221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs 269 (997)
.....++.. ....+.+..+. ..+.+|++|+++.... ...+...+. ....+.
T Consensus 220 ---------sk~vGese~-~vr~lF~~Ar~-~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 220 ---------QKYIGEGSR-MVRELFVMARE-HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp ---------CSSTTHHHH-HHHHHHHHHHH-TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ---------ccccchHHH-HHHHHHHHHHH-hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 111111221 22222222222 4789999999865310 111111111 233455
Q ss_pred EEEEeeCChhhhh----cCCC--eeEEcCCCCHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCS----KMSD--VTVQIEELGEEDRLKLFKQIARLPD---SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~----~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~i~~~~~glP 330 (997)
.||.||...+..+ +-+. ..+.++.-+.++-.++|+.+....+ ..+ ...+++.+.|.-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 6788887654322 1122 6888888888888889988775322 222 356777888754
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.57 E-value=0.0012 Score=75.00 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=98.9
Q ss_pred ccccccHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 140 SDLTHSSKALNSIMKLLK-------------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
.+++|.+..++++.+++. ....+-|.|+|++|+|||++|+++++.... ..+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~------- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGP------- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHH-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEch-------
Confidence 468999999998888774 234567899999999999999999886521 12444421
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccC--CCCCceEE
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYG--EERKRCKV 271 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~i 271 (997)
++.. .............+..... +++.+|+||+++.... ...+...+. ....+.+|
T Consensus 273 ---~l~~----~~~g~~~~~~~~~f~~A~~--~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ---EIMS----KLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ---HHHT----SCTTHHHHHHHHHHHHHHH--TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ---Hhhh----hhcchhHHHHHHHHHHHHh--cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111 1111111222222222223 4788999999953311 011111111 22335677
Q ss_pred EEeeCChhh-hhc----CCC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCc-hhHHHH
Q 038902 272 IVTSRRLDV-CSK----MSD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PNAIAI 335 (997)
Q Consensus 272 ivTtr~~~v-~~~----~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~ 335 (997)
|.||....- ... ..- ..+.++..+.++-.++++.++....... ......+++.+.|. +-.+..
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHHH
Confidence 777775532 111 112 5789999999999999998875322111 11134566667764 444443
No 215
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00055 Score=72.72 Aligned_cols=146 Identities=11% Similarity=0.133 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhh--CCCceEEEEEcc-CCCHHHHHHHHHHHhCCCCc
Q 038902 144 HSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTI--APHDKAHVIVAE-SSDLRRIQDKIAELLKFKIE 220 (997)
Q Consensus 144 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~ 220 (997)
|.+..++.|...+..+......++|+.|+||||+|+.+++..... .+.+..+++.+. ...+.++ +++........-
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc
Confidence 445567777777776667789999999999999999999863221 133445555432 2233332 233333321100
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh-hhhhcCCCeeEEcCCCCHH
Q 038902 221 EEDELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL-DVCSKMSDVTVQIEELGEE 297 (997)
Q Consensus 221 ~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~~~~l~~L~~~ 297 (997)
.+++-++|+|+++.. ...+.+...+-...+.+.+|++|.+. .+...+....+++++++++
T Consensus 80 -----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~ 142 (305)
T 2gno_A 80 -----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPK 142 (305)
T ss_dssp -----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCH
T ss_pred -----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHH
Confidence 136788999999875 33444544443344567777777554 2322221138999999999
Q ss_pred HHHHHHHHHc
Q 038902 298 DRLKLFKQIA 307 (997)
Q Consensus 298 ~~~~lf~~~~ 307 (997)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888776
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0014 Score=72.44 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=92.4
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+.- ...+-|.++||+|+|||++|+++++.... ..+.++.+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~----~~~~v~~~~l~~---- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA----AFIRVNGSEFVH---- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC----EEEEEEGGGTCC----
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecchhhc----
Confidence 677888888887765521 23567899999999999999999998753 224555443221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--------c--------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--------N--------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--------~--------~~~l~~~~~--~~~~gs 269 (997)
.....+.. ....+....+. ..+.+|++|+++... . ...+...+. ....+.
T Consensus 245 ----------~~~Ge~e~-~ir~lF~~A~~-~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 245 ----------KYLGEGPR-MVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp ----------SSCSHHHH-HHHHHHHHHHH-TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred ----------cccchhHH-HHHHHHHHHHH-cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 11111111 12222222222 478999999986421 0 111111111 233456
Q ss_pred EEEEeeCChhhhh----cCCC--eeEEcCCCCHHHHH-HHHHHHcCCCC---ChhhHHHHHHHHHHhCCc
Q 038902 270 KVIVTSRRLDVCS----KMSD--VTVQIEELGEEDRL-KLFKQIARLPD---SEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 270 ~iivTtr~~~v~~----~~~~--~~~~l~~L~~~~~~-~lf~~~~~~~~---~~~~~~~~~~i~~~~~gl 329 (997)
.||.||...+..+ +-+. ..+.++.+++.++. .+|+.+....+ ..+ ...+++++.|.
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 7788887654322 1122 57788777665554 46666553221 222 35677778775
No 217
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.55 E-value=0.00012 Score=73.21 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccC----CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchh
Q 038902 147 KALNSIMKLLKDD----KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEE 222 (997)
Q Consensus 147 ~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (997)
..++.+.+++... ..+.+.|+|++|+||||||+.+++..... ....++++++ .+...+.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVP------ELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHH------HHHHHHHHC---C----
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhH------HHHHHHHHHhccc----
Confidence 3455556666433 12789999999999999999999987642 2333666543 3444443322111
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEcccccc--ccccc--ccc-ccCCC-CCceEEEEeeCCh
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVREK--INLAV--SGI-PYGEE-RKRCKVIVTSRRL 278 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~--~~~~~--l~~-~~~~~-~~gs~iivTtr~~ 278 (997)
. ...+.+.+.+ .. +|||||++.. ..|.. +.. .+... ..+.++|+||+..
T Consensus 105 ~----~~~~~~~~~~--~~-~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 T----MNEKLDYIKK--VP-VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp C----CHHHHHHHHH--SS-EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred h----HHHHHHHhcC--CC-EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 1122334443 33 8999999653 33332 211 11111 2355788888753
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.52 E-value=0.00045 Score=74.33 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++|++..++.+...+... ....+.++|++|+||||+|+.+++..... ....+.++.+....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~~~~~~~~-~~~- 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMTEYMEKHA-VSR- 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGGGCCSTTH-HHH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeeccccccccc-HHH-
Confidence 5889999998888777432 13589999999999999999999987431 11225555554332211 111
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.++........ .....+...+.. ...-++++|+++..
T Consensus 95 --l~g~~~~~~~~-~~~~~~~~~~~~-~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 --LIGAPPGYVGY-EEGGQLTEAVRR-RPYSVILFDAIEKA 131 (311)
T ss_dssp --HHCCCTTSTTT-TTCCHHHHHHHH-CSSEEEEEETGGGS
T ss_pred --hcCCCCccccc-cccchHHHHHHh-CCCeEEEEeChhhc
Confidence 12221110000 000123334444 35579999999764
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.002 Score=71.30 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=96.7
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+.- ...+-|.++||+|+|||++|+++++.... ..+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s~l~s---- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIVD---- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGTCC----
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehhhhcc----
Confidence 667888887777665521 23578999999999999999999998753 224454443221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--------c--------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--------N--------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--------~--------~~~l~~~~~--~~~~gs 269 (997)
.....+. .....+....+. ..+.+|++|+++... . ...+...+. ....+.
T Consensus 254 ----------k~~Gese-~~ir~~F~~A~~-~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 ----------KYIGESA-RIIREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp ----------SSSSHHH-HHHHHHHHHHHH-SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ----------ccchHHH-HHHHHHHHHHHh-cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 1111111 122222222222 489999999996431 0 111111111 223456
Q ss_pred EEEEeeCChhhhhc----CCC--eeEEcCCCCHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCSK----MSD--VTVQIEELGEEDRLKLFKQIARLPD---SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~~----~~~--~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~i~~~~~glP 330 (997)
.||.||...+..+. -+. ..+.++.-+.++-.++|+.+..... ..+ ...+++.+.|.-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 78888876654331 122 6788887788888888887764221 222 355677777753
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0014 Score=72.19 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=97.1
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.... ..+.+..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~s~L~----- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIGSELV----- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEGGGGC-----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEhHHhh-----
Confidence 577888888888765421 24678999999999999999999998753 22444443221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs 269 (997)
......+.. ....+....+. ..+++|++|+++.... ...+...+. ....+.
T Consensus 281 ---------sk~vGesek-~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 281 ---------QKYVGEGAR-MVRELFEMART-KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ---------CCSSSHHHH-HHHHHHHHHHH-TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ---------cccCCHHHH-HHHHHHHHHHh-cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 111111221 22222222222 4889999999864310 001111111 223455
Q ss_pred EEEEeeCChhhhh----cCCC--eeEEcCCCCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCS----KMSD--VTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~----~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~glP 330 (997)
.||.||...+... +-+. ..+.++.-+.++-.++|+.+....+ ..+. -...|++.+.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 6777887554322 1122 6888888888888889988775322 1111 1355777888753
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0033 Score=68.57 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=96.3
Q ss_pred cccccHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLK----D---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+. . ...+-|.++|++|+|||.||+++++.... ..+.++.+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~s~l~----- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVGSELI----- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEESGGGC-----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEHHHhh-----
Confidence 66788888777766542 1 23577999999999999999999998753 22444433221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------cccccccc--CCCCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPY--GEERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~--~~~~~gs 269 (997)
.....++. .....+....+. ..+.+|++|+++.... ...+...+ .....+.
T Consensus 254 ---------sk~vGese-k~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 254 ---------QKYLGDGP-RLCRQIFKVAGE-NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp ---------CSSSSHHH-HHHHHHHHHHHH-TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred ---------hccCchHH-HHHHHHHHHHHh-cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 11111111 222222222222 4789999999864310 00111111 1233456
Q ss_pred EEEEeeCChhhhhc--CC--C--eeEEcCCCCHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhCCch
Q 038902 270 KVIVTSRRLDVCSK--MS--D--VTVQIEELGEEDRLKLFKQIARLPD---SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 270 ~iivTtr~~~v~~~--~~--~--~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~i~~~~~glP 330 (997)
.||.||...+..+. .. . ..+.++.-+.++-.++|+.+....+ ..+ ...+++.+.|.-
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 77888876654331 11 2 5677887788888888988775322 222 355677777753
No 222
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=9.6e-05 Score=76.44 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=61.6
Q ss_pred hcCccccEEEecCcccCCC---CccccccccCCEEEcCCCCccCCCcccccC--cccEEEecCCcccc-cC-------cc
Q 038902 540 EHMREINFLDLSYTNISTL---PGSIECLVKLRSLRAENTHLEKAPLKKEFK--ELVILILRGSSIRE-LP-------KG 606 (997)
Q Consensus 540 ~~l~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~l~~lp~~~~l~--~L~~L~L~~~~l~~-lp-------~~ 606 (997)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.++++..+..+. +|++|+|.+|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5688899999999988754 356678999999999999888876555555 89999999998763 33 23
Q ss_pred ccCCCCCcEEec
Q 038902 607 LERWINLKLLDL 618 (997)
Q Consensus 607 ~~~l~~L~~L~l 618 (997)
+..+++|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 668899999873
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0031 Score=69.70 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLLK----D---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+.+. . ...+-|.++||+|+|||.+|+++++.... ..+.++.+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~----- 252 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAAPQLV----- 252 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGGC-----
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEehhhhh-----
Confidence 77888888888876542 1 23678999999999999999999998753 22444443221
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc-------c---------ccccccccCC--CCCce
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI-------N---------LAVSGIPYGE--ERKRC 269 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~-------~---------~~~l~~~~~~--~~~gs 269 (997)
......+.. ....+....+. ..+++|++|+++... . ...+...+.. ...+.
T Consensus 253 ---------~~~vGese~-~ir~lF~~A~~-~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 253 ---------QMYIGEGAK-LVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp ---------SSCSSHHHH-HHHHHHHHHHH-HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred ---------hcccchHHH-HHHHHHHHHHh-cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 111111111 22222222221 378999999986420 0 0112122221 22344
Q ss_pred EEEEeeCChhhhhc-C---CC--eeEEcCCCCHHHHHHHHHHHcCC---CCChhhHHHHHHHHHHhCCc
Q 038902 270 KVIVTSRRLDVCSK-M---SD--VTVQIEELGEEDRLKLFKQIARL---PDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 270 ~iivTtr~~~v~~~-~---~~--~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~i~~~~~gl 329 (997)
.||.||...+.... + +. ..+.++.-+.++-.++|+.+... .+.-+ ...|++.+.|.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 66778876554331 1 12 67888888888888888776642 11222 35577788775
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.001 Score=75.60 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=36.2
Q ss_pred cccccHHHHHHHHH---HhccC--CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMK---LLKDD--KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~---~l~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+++|.+..++.+.. ++..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 78999988776544 33333 236789999999999999999999875
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.42 E-value=0.0016 Score=73.27 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=95.3
Q ss_pred cccccccHHHHHHHHHHh---cc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 139 VSDLTHSSKALNSIMKLL---KD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+.+++|.+..++++.+.+ .. .-.+-|.|+|++|+|||+||+.+++.... + .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~--f~~is~~~~~~~-- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--P--FFHISGSDFVEL-- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--C--EEEEEGGGTTTC--
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C--eeeCCHHHHHHH--
Confidence 346788887766665543 21 12345889999999999999999987642 2 244444332211
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCCc
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERKR 268 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~g 268 (997)
............+..... ..+.+|++|+++.... ...+...+. ....+
T Consensus 89 ------------~~g~~~~~~r~lf~~A~~--~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ------------FVGVGAARVRDLFAQAKA--HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ------------CTTHHHHHHHHHHHHHHH--TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ------------HhcccHHHHHHHHHHHHh--cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000111112222223333 3789999999965311 112211111 12345
Q ss_pred eEEEEeeCChhhhh-c-CC--C--eeEEcCCCCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCCch
Q 038902 269 CKVIVTSRRLDVCS-K-MS--D--VTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 269 s~iivTtr~~~v~~-~-~~--~--~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~glP 330 (997)
..||.||...+... . .. . ..+.++..+.++-.++++.++...+ .++. -...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 67888887765432 1 11 2 4788888888887888877765322 1111 1344777888876
No 226
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.40 E-value=0.0011 Score=80.70 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=89.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhC----CCce-EE-EEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIA----PHDK-AH-VIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~-~w-v~v~~~~~~~~~~~~i~~~ 214 (997)
.++||+.+++++++.+......-+.++|++|+||||+|+.+++...... ..+. ++ ++.+. +.
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l~------ 254 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------LL------ 254 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------Hh------
Confidence 7899999999999999776667789999999999999999999874321 1223 22 11111 00
Q ss_pred hCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEccccccc--------c---ccccccccCCCCCceEEEEeeCChhhhhc
Q 038902 215 LKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKI--------N---LAVSGIPYGEERKRCKVIVTSRRLDVCSK 283 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~--------~---~~~l~~~~~~~~~gs~iivTtr~~~v~~~ 283 (997)
.+.. ...........+.+.+.. .++.+|++||+.... . ...+...+ . ..+.++|.+|........
T Consensus 255 ~~~~-~~g~~e~~l~~~~~~~~~-~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 255 AGTK-YRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp CCCC-CSSCHHHHHHHHHHHHSS-SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHHCC
T ss_pred cccc-ccchHHHHHHHHHHHHHh-cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHhhh
Confidence 0011 111122222333333332 357999999997541 1 11122211 1 234566777665432211
Q ss_pred ------CCC--eeEEcCCCCHHHHHHHHHHHc
Q 038902 284 ------MSD--VTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 284 ------~~~--~~~~l~~L~~~~~~~lf~~~~ 307 (997)
+.. ..+.++..+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 578999999999988887654
No 227
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.0022 Score=66.63 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=91.1
Q ss_pred ccccccccHHHHHHHHHHh---cc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH
Q 038902 138 SVSDLTHSSKALNSIMKLL---KD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR 205 (997)
Q Consensus 138 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~ 205 (997)
...+++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++.... + .+.++.+.-.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~--~~~i~~~~~~~~- 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P--FFTISGSDFVEM- 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C--EEEECSCSSTTS-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C--EEEEeHHHHHHH-
Confidence 3446788877766665433 21 12346889999999999999999987642 2 233332221100
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccC--CCCC
Q 038902 206 RIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EERK 267 (997)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~ 267 (997)
......... ..+.+.... ..+.++++|+++.... ...+...+. ....
T Consensus 85 -------------~~~~~~~~~-~~~~~~a~~-~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 -------------FVGVGASRV-RDMFEQAKK-AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------CCCCCHHHH-HHHHHHHHT-TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------hhhhhHHHH-HHHHHHHHH-cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000111111 122222222 3678999999954311 011111111 1233
Q ss_pred ceEEEEeeCChhhh-hcC----CC-eeEEcCCCCHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhCC-chhHHH
Q 038902 268 RCKVIVTSRRLDVC-SKM----SD-VTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGS-LPNAIA 334 (997)
Q Consensus 268 gs~iivTtr~~~v~-~~~----~~-~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~i~~~~~g-lPlai~ 334 (997)
+..||.||...+.. ... .- ..+.++..+.++-.++++......+ .++ .....++....| .+--+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHH
Confidence 55777787765422 111 11 5778888888888888877664221 111 113456677777 554333
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.21 E-value=0.00034 Score=73.27 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES 201 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~ 201 (997)
.++|+...+.++.+.+.. .....|.|+|+.|+|||++|+.+++..... ....+.++.+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEecCCC
Confidence 578888888888766632 233567899999999999999999865421 122255555543
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.18 E-value=6.9e-05 Score=70.13 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=33.4
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+++|+...++++.+.+.. ....-|.|+|+.|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578888888888877642 233457899999999999999998754
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.17 E-value=0.00034 Score=65.71 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE 200 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~ 200 (997)
.-..++|+|+.|+|||||++.++...... .+..+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHH
Confidence 45789999999999999999999987642 23346665543
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.00 E-value=0.0008 Score=81.89 Aligned_cols=145 Identities=14% Similarity=0.228 Sum_probs=82.2
Q ss_pred cccccHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... ....+.++.+.-.+.....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s~~~~~~~~~--- 567 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMSEYMEKHSTS--- 567 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGGGGCSSCCCC---
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEechhcccccccc---
Confidence 6889999998888777421 12379999999999999999999986321 2223666655432111000
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccC-----------CCCCceEEEEeeCC-
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYG-----------EERKRCKVIVTSRR- 277 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~--~~~l~~~~~-----------~~~~gs~iivTtr~- 277 (997)
...+...++. ...-+|+||++..... ...+...+. ......+||+||..
T Consensus 568 ----------------~~~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----------------GGQLTEKVRR-KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------------------CHHHHHH-CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----------------cchhhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0111122333 2445899999976421 111111110 01234688999983
Q ss_pred ----------------hhhhhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 278 ----------------LDVCSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 278 ----------------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
++...++. ..+.+.+++.++-.+++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHH
Confidence 11222332 478889999888777765543
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.97 E-value=0.00068 Score=72.29 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
+++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 478888888888877743 334567899999999999999999865
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.96 E-value=0.00035 Score=73.32 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=33.5
Q ss_pred ccccccHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 140 SDLTHSSKALNSIMKLLK---D---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357777666555554432 1 12344789999999999999999998643
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.01 Score=73.11 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=37.7
Q ss_pred cccccHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDD---------KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|++..++.+...+... ....+.|+|+.|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999988887776321 235889999999999999999999864
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.0089 Score=69.11 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=76.3
Q ss_pred cccccHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK------DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
+++|.+...+.+.+.+. .....++.++|++|+||||||+.++..... .| ..+.++...+...+.......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~--~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KF--VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--EE--EEECCCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--Ce--EEEEecccchhhhhhhHHHHH
Confidence 46676666555544331 124568999999999999999999988743 22 333333322222221111111
Q ss_pred hCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEEcccccccc------ccccccccCCC---------------CCceEEE
Q 038902 215 LKFKIEEEDELQRRATLAKRLRE-RTKKVLIILDDVREKIN------LAVSGIPYGEE---------------RKRCKVI 272 (997)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~~------~~~l~~~~~~~---------------~~gs~ii 272 (997)
.+. ....+.+.+.. ...+-++++|+++.... ...+...+... .....||
T Consensus 158 ig~---------~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 158 VGA---------MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred hcc---------CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111 11112222222 11344889999875421 12222222110 0334677
Q ss_pred EeeCChh-----hhhcCCCeeEEcCCCCHHHHHHHHHHHc
Q 038902 273 VTSRRLD-----VCSKMSDVTVQIEELGEEDRLKLFKQIA 307 (997)
Q Consensus 273 vTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 307 (997)
.||+... +..++ ..+.+.+++.++-.+++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~--~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM--EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE--EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc--ceeeeCCCCHHHHHHHHHHHH
Confidence 7776543 22233 578999999988888776654
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.67 E-value=0.0042 Score=75.65 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLKD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++.+...... .+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~~s~~~~~~----~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERH----TV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEEGGGCSSSS----CC
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEechhhcchh----hH
Confidence 588999998888776632 1234789999999999999999998873 112556655432210 00
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 212 AELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...+|.... .........+...+.. ...-+|+||++...
T Consensus 531 ~~l~g~~~g-~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 531 SRLIGAPPG-YVGFDQGGLLTDAVIK-HPHAVLLLDEIEKA 569 (758)
T ss_dssp SSSCCCCSC-SHHHHHTTHHHHHHHH-CSSEEEEEETGGGS
T ss_pred hhhcCCCCC-CcCccccchHHHHHHh-CCCcEEEEeCcccc
Confidence 011122111 1111111123344444 35789999999764
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.58 E-value=0.002 Score=67.59 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE--ccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV--AESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRER 238 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (997)
-+++.|+|++|+||||||.+++.. . .....|+++ .+..+.. ..+.......+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~---G~~VlyIs~~~eE~v~~~---------------~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L---GGKDKYATVRFGEPLSGY---------------NTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H---HTTSCCEEEEBSCSSTTC---------------BCCHHHHHHHHHHHHHH-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C---CCCEEEEEecchhhhhhh---------------hcCHHHHHHHHHHHHhh-
Confidence 357789999999999999999987 2 122366766 3321110 02334455556677776
Q ss_pred CCcEEEEEcccccc
Q 038902 239 TKKVLIILDDVREK 252 (997)
Q Consensus 239 ~k~~LlvlDdv~~~ 252 (997)
.+ +||+|++...
T Consensus 183 -~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 -HR-VIVIDSLKNV 194 (331)
T ss_dssp -CS-EEEEECCTTT
T ss_pred -CC-EEEEeccccc
Confidence 55 9999988654
No 238
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.51 E-value=0.0026 Score=67.98 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCceEEEEEccCC-CHHHHHHHHHHHhCC-----CCchhh-----HHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDKAHVIVAESS-DLRRIQDKIAELLKF-----KIEEED-----ELQ 226 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~-----~~~~~~-----~~~ 226 (997)
..-+.++|+|+.|+|||||++.+++..... ..+.++++-+.+.. .+.++. +.+.. ..++.. ...
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~----~~~~~~vV~atadep~~~r~~~a~ 247 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ----RLVKGEVVASTFDEPASRHVQVAE 247 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHH----TTCSSEEEEECTTSCHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHH----HHhCeEEEEeCCCCCHHHHHHHHH
Confidence 445799999999999999999998876442 34555666666543 223332 22211 011111 122
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 227 RRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 227 ~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
..-.+.+++++.++.+||++||+...
T Consensus 248 ~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 248 MVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 33345677777789999999999654
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.49 E-value=0.0092 Score=60.72 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc--------------------
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE-------------------- 220 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------------- 220 (997)
-.+++|+|++|+|||||++.++...... ....+|+... ....++...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 4689999999999999999999766432 2233565543 23444444332 3432211
Q ss_pred ----hhhHHHHHHHHHHHHHh-cCCcEEEEEccccccc-----cccccccccCC--CCCceEEEEeeCCh
Q 038902 221 ----EEDELQRRATLAKRLRE-RTKKVLIILDDVREKI-----NLAVSGIPYGE--ERKRCKVIVTSRRL 278 (997)
Q Consensus 221 ----~~~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~~-----~~~~l~~~~~~--~~~gs~iivTtr~~ 278 (997)
..+..+....+...+.. ..++.+||+|...... ....+...+.. ...|.-||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01233444444444443 2334599999987431 11122111111 12467788888765
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.46 E-value=0.047 Score=56.89 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcE
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKV 242 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~ 242 (997)
-+.++|++|+||||||+.++..... ..+.+..+.-.+. ... ........+.+.... ..+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~-~~p~ 105 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKN-SAPC 105 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHH-TCSE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHh-cCCC
Confidence 3999999999999999999987542 2255543221110 000 011112222222211 3678
Q ss_pred EEEEcccccccc---------c----cccccccC--CCCCceEEEEeeCChhhhhc----CCC--eeEEcCCCCHHHHHH
Q 038902 243 LIILDDVREKIN---------L----AVSGIPYG--EERKRCKVIVTSRRLDVCSK----MSD--VTVQIEELGEEDRLK 301 (997)
Q Consensus 243 LlvlDdv~~~~~---------~----~~l~~~~~--~~~~gs~iivTtr~~~v~~~----~~~--~~~~l~~L~~~~~~~ 301 (997)
++++|+++.... . ..+...+. ......-++.+|...++.+. -+. ..+.++.-+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999965210 0 01111111 12234566777777665431 112 677888888888888
Q ss_pred HHHHHcC
Q 038902 302 LFKQIAR 308 (997)
Q Consensus 302 lf~~~~~ 308 (997)
+|+....
T Consensus 186 il~~~~~ 192 (274)
T 2x8a_A 186 ILKTITK 192 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8887763
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.39 E-value=0.055 Score=55.77 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcE
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKV 242 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~ 242 (997)
-+.|+|++|+||||||+.++..... ..+.++.. ++ ... . .. . .......+.+.... ....
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~----~~i~~~~~------~~----~~~-~--~~-~-~~~~i~~~~~~~~~-~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV----PFITASGS------DF----VEM-F--VG-V-GAARVRDLFETAKR-HAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHH------HH----HHS-C--TT-H-HHHHHHHHHHHHTT-SSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC----CEEEeeHH------HH----HHH-H--hh-H-HHHHHHHHHHHHHh-cCCe
Confidence 3899999999999999999987642 12333321 11 110 0 00 0 01111122222211 2568
Q ss_pred EEEEcccccccc----------------ccccccccCC--CCCceEEEEeeCChhhhhc-----CCC-eeEEcCCCCHHH
Q 038902 243 LIILDDVREKIN----------------LAVSGIPYGE--ERKRCKVIVTSRRLDVCSK-----MSD-VTVQIEELGEED 298 (997)
Q Consensus 243 LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iivTtr~~~v~~~-----~~~-~~~~l~~L~~~~ 298 (997)
++++|+++.... ...+...+.. ......++.||...++... ..- ..+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 999999954210 1112111111 1223455666766554331 112 678888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHhCCc
Q 038902 299 RLKLFKQIARLPDSEAFEGAAKVIVKACGSL 329 (997)
Q Consensus 299 ~~~lf~~~~~~~~~~~~~~~~~~i~~~~~gl 329 (997)
-.++++..+....... +.....+++.+.|.
T Consensus 191 r~~il~~~~~~~~~~~-~~~~~~la~~~~G~ 220 (254)
T 1ixz_A 191 REQILRIHARGKPLAE-DVDLALLAKRTPGF 220 (254)
T ss_dssp HHHHHHHHHTTSCBCT-TCCHHHHHHTCTTC
T ss_pred HHHHHHHHHcCCCCCc-ccCHHHHHHHcCCC
Confidence 8888876654221110 01133466666664
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.36 E-value=0.011 Score=70.48 Aligned_cols=169 Identities=16% Similarity=0.180 Sum_probs=91.0
Q ss_pred cccccHHHHHHHHHHh----cc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH
Q 038902 141 DLTHSSKALNSIMKLL----KD---------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI 207 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~ 207 (997)
++.|-+..+++|.+++ .. ..++-|.++|++|+|||+||+++++.... ..+.++.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~------- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPE------- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHH-------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHH-------
Confidence 4556665555555443 21 23577999999999999999999986542 114444321
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccC--CCCCceEEE
Q 038902 208 QDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYG--EERKRCKVI 272 (997)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~ii 272 (997)
+. + .....+.......+.... ...+.+|++|+++.... ...+...+. ....+..||
T Consensus 274 ---l~---s-k~~gese~~lr~lF~~A~--~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 274 ---IM---S-KLAGESESNLRKAFEEAE--KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp ---HH---S-SCTTHHHHHHHHHHHHHT--TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred ---hh---c-ccchHHHHHHHHHHHHHH--HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 11 1 111112222222222222 24789999999975411 011111111 112344566
Q ss_pred EeeCChhhhh-cC---CC--eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 273 VTSRRLDVCS-KM---SD--VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 273 vTtr~~~v~~-~~---~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
.||...+... .+ +. ..++++.-+.++-.++|+.+......... .-...|++++.|.-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d-vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD-VDLEQVANETHGHV 407 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT-CCHHHHHHHCCSCC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc-cCHHHHHHhcCCCC
Confidence 6776554322 11 12 67889888888888899877753221110 11456778888764
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.26 E-value=0.018 Score=58.94 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhC----CCce-EEEEEccCCCHHHHHHHHHHHhCCCCc----------hhhHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIA----PHDK-AHVIVAESSDLRRIQDKIAELLKFKIE----------EEDEL 225 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 225 (997)
-.++.|+|++|+|||||++.++....... .-.. +|++....+...++. .+++.++.... ..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999998632211 1234 888877655555443 34455554320 11111
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 ---QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ---~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....+.+.+.. .+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVE-SRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhc-CCceEEEEeCchHH
Confidence 223334455543 46778899977543
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.24 E-value=0.025 Score=68.73 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred ccccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 140 SDLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 140 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
.+++|.+..++++.+++.. .....|.|+|++|+||||||+.++..... ..+.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~----~~i~v~~~~------ 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPE------ 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC----EEEEEEHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC----cEEEEEchH------
Confidence 3788888888888776632 23567999999999999999999876432 113333211
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccC--CCCCceEE
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYG--EERKRCKV 271 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~i 271 (997)
+...............+...... ...++++|++..... ...+...+. ....+..+
T Consensus 274 --------l~~~~~g~~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 --------IMSKLAGESESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp --------HSSSSTTHHHHHHHHHHHHHHHH--CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred --------hhhhhhhhHHHHHHHHHHHHHhc--CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 11111111112222223333333 788999999954311 011111111 11234466
Q ss_pred EEeeCChhhhh-cC---CC--eeEEcCCCCHHHHHHHHHHHcC
Q 038902 272 IVTSRRLDVCS-KM---SD--VTVQIEELGEEDRLKLFKQIAR 308 (997)
Q Consensus 272 ivTtr~~~v~~-~~---~~--~~~~l~~L~~~~~~~lf~~~~~ 308 (997)
|.||...+-.. .+ +. ..+.+...+.++-.+++...+.
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 66666543221 11 12 5678888899999999887765
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.045 Score=57.28 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=75.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhcCCcE
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLAKRLRERTKKV 242 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k~~ 242 (997)
-+.|+|++|+||||||+.++..... ..+.++.. .+ .... .. . .......+.+.... ....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~----~~i~~~~~------~~----~~~~---~~-~-~~~~i~~~~~~~~~-~~~~ 134 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARV----PFITASGS------DF----VEMF---VG-V-GAARVRDLFETAKR-HAPC 134 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHH------HH----HHST---TT-H-HHHHHHHHHHHHHT-SCSE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCC----CEEEecHH------HH----HHHH---hh-H-HHHHHHHHHHHHHh-cCCc
Confidence 3899999999999999999987641 22444321 11 1100 00 0 01111122222221 2568
Q ss_pred EEEEccccccc------------c----ccccccccCCC--CCceEEEEeeCChhhhh-----cCCC-eeEEcCCCCHHH
Q 038902 243 LIILDDVREKI------------N----LAVSGIPYGEE--RKRCKVIVTSRRLDVCS-----KMSD-VTVQIEELGEED 298 (997)
Q Consensus 243 LlvlDdv~~~~------------~----~~~l~~~~~~~--~~gs~iivTtr~~~v~~-----~~~~-~~~~l~~L~~~~ 298 (997)
++++|++.... . ...+...+... .....++.||...++.. ...- ..+.++..+.++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 99999995321 0 11121122211 22345556666654432 1112 578888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 299 RLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 299 ~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
-.++++..+....... +.....+++.+.|..
T Consensus 215 r~~il~~~~~~~~~~~-~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 215 REQILRIHARGKPLAE-DVDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHTTSCBCT-TCCHHHHHHTCTTCC
T ss_pred HHHHHHHHHccCCCCc-ccCHHHHHHHcCCCC
Confidence 8888877664221110 011334666676654
No 246
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.17 E-value=0.016 Score=64.17 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCC--------CCch---hh--HHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKF--------KIEE---ED--ELQR 227 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~--------~~~~---~~--~~~~ 227 (997)
+.++|+|..|+|||||+..+.........+-++++.+.+.. ...++..++...-.. ..++ .. ....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 47899999999999999999987665333323666665543 344555555432110 0111 11 1122
Q ss_pred HHHHHHHHHh-cCCcEEEEEccccc
Q 038902 228 RATLAKRLRE-RTKKVLIILDDVRE 251 (997)
Q Consensus 228 ~~~l~~~l~~-~~k~~LlvlDdv~~ 251 (997)
.-.+.+++++ .++++|+++||+..
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 3356778877 78999999999954
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.15 E-value=0.024 Score=61.56 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=100.8
Q ss_pred HHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 038902 154 KLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEEEDELQRRATLA 232 (997)
Q Consensus 154 ~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (997)
+.+.+.-.++..++|+.|.||++.|+.+.+..... .|+. ..+.+....++.++...+...
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 71 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAM------------------ 71 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHH------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCc------------------
Confidence 33433446788999999999999999999876543 3433 223333334444443332110
Q ss_pred HHHHhcCCcEEEEEccccc-c--ccccccccccCCCCCceEEEEeeCC-------hhhhhcCCC--eeEEcCCCCHHHHH
Q 038902 233 KRLRERTKKVLIILDDVRE-K--INLAVSGIPYGEERKRCKVIVTSRR-------LDVCSKMSD--VTVQIEELGEEDRL 300 (997)
Q Consensus 233 ~~l~~~~k~~LlvlDdv~~-~--~~~~~l~~~~~~~~~gs~iivTtr~-------~~v~~~~~~--~~~~l~~L~~~~~~ 300 (997)
-+ .+++-++|+|++.. . ..++.+...+....+++.+|++|.. ..+...+.. ..+++.+++.++..
T Consensus 72 -pl--f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 72 -SL--FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp -HH--CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred -CC--ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 01 13677888999866 2 4455554444444457777776643 234444333 78999999999998
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 038902 301 KLFKQIARLPDSEAFEGAAKVIVKACGSLPNAIAI 335 (997)
Q Consensus 301 ~lf~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 335 (997)
..+.+.+....-.-..+.+..+++.++|.+.++..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 88887765333333445788899999998877654
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.09 E-value=0.018 Score=60.15 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCch------hhHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEE------EDELQRRATLAKR 234 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 234 (997)
.++-|.|++|+||||||.+++........-.. +|++....++.. .+++++.+.+. .+.++....+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 37899999999999999999887664321234 999887777653 37778876431 2223321223344
Q ss_pred HH--hcCCcEEEEEcccccc
Q 038902 235 LR--ERTKKVLIILDDVREK 252 (997)
Q Consensus 235 l~--~~~k~~LlvlDdv~~~ 252 (997)
+. ..++.-+||+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 41 1357889999988654
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.05 E-value=0.018 Score=61.93 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAKR 234 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 234 (997)
-+++.|+|++|+||||||.+++...... ...++|++....++.. .+++++...+ ..+..+....+...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 4699999999999999999999887542 2334888877666654 5566665422 12333344444444
Q ss_pred HHhcCCcEEEEEcccccc
Q 038902 235 LRERTKKVLIILDDVREK 252 (997)
Q Consensus 235 l~~~~k~~LlvlDdv~~~ 252 (997)
+.. .+.-++|+|.+...
T Consensus 135 ~~~-~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRS-GVVDLIVVDSVAAL 151 (356)
T ss_dssp HHT-SCCSEEEEECTTTC
T ss_pred hhh-cCCCeEEehHhhhh
Confidence 443 45568889987544
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.04 E-value=0.022 Score=61.15 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCC----Cce-EEEEEccCCCHHHHHHHHHHHhCCCCc----------hhhHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAP----HDK-AHVIVAESSDLRRIQDKIAELLKFKIE----------EEDEL 225 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 225 (997)
-.++.|+|++|+||||+|..++........ -.. +|++....++..++. ++++.++.+.+ ..+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 469999999999999999999987532110 124 899888877777765 34566655321 01111
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 ---QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ---~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....+...+....+.-+||+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 233344444442136678899977543
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.96 E-value=0.0087 Score=63.70 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 145 SSKALNSIMKLLKDD---KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 145 r~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
+...++.+.+++... ....+.|+|+.|+|||+||+++++.......+...++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 344455555666532 247889999999999999999999876222344455554
No 252
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.94 E-value=0.039 Score=62.46 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=90.7
Q ss_pred cccccccHHHHHHHHHHh---ccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHH
Q 038902 139 VSDLTHSSKALNSIMKLL---KDD---------KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRR 206 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~ 206 (997)
+.+++|.+..++++.+.. ... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEM-- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHh--
Confidence 336788877766655433 221 1234899999999999999999987642 2244544321110
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHh--cCCcEEEEEcccccccc----------------ccccccccC--CCC
Q 038902 207 IQDKIAELLKFKIEEEDELQRRATLAKRLRE--RTKKVLIILDDVREKIN----------------LAVSGIPYG--EER 266 (997)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~~k~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~ 266 (997)
.. ......++..+.. ...+.++++|+++.... ...+...+. ...
T Consensus 104 ------------~~----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 104 ------------FV----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp ------------CT----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred ------------hh----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 00 0111222333332 12457999999964310 111211121 112
Q ss_pred CceEEEEeeCChhhhhc--C---CC-eeEEcCCCCHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhCCch
Q 038902 267 KRCKVIVTSRRLDVCSK--M---SD-VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 330 (997)
Q Consensus 267 ~gs~iivTtr~~~v~~~--~---~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~i~~~~~glP 330 (997)
.+..|+.||+..++... . .- ..+.++.-+.++-.++++.++....-.. +.....|++.+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-DVDLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-SSTTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHhcCCCC
Confidence 34466677776655331 1 11 5788888888888888877664211110 011345667777765
No 253
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.92 E-value=0.017 Score=61.07 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356888999999999999999999874
No 254
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.26 Score=51.70 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFK 218 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~ 218 (997)
.++++++|++|+||||++..++...... .....+++..... .....+.......+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~ 155 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVP 155 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeE
Confidence 6799999999999999999999887653 2233555543222 2222233445555543
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.016 Score=58.27 Aligned_cols=45 Identities=22% Similarity=0.111 Sum_probs=33.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQ 208 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~ 208 (997)
.-.++.|+|++|+||||||..++. .. ....+|++....++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHH
Confidence 346999999999999999999998 22 2233888776655665554
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.74 E-value=0.24 Score=54.73 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+|.++|++|+||||++..++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999988765
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.65 E-value=0.03 Score=60.47 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (997)
.-+++.|+|++|+||||||.+++...... ...++|++....++.. .++.++...+ ..+..+....+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 35799999999999999999999776542 2334889887766543 3556665422 1122333333333
Q ss_pred HHHhcCCcEEEEEcccccc
Q 038902 234 RLRERTKKVLIILDDVREK 252 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~ 252 (997)
.... .+.-+||+|.+...
T Consensus 134 l~~~-~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRS-GALDIIVIDSVAAL 151 (349)
T ss_dssp HHTT-TCCSEEEEECGGGC
T ss_pred HHhc-CCCCEEEEcChHhh
Confidence 3332 35669999988553
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.65 E-value=0.051 Score=58.73 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC----CCce-EEEEEccCCCHHHHHHHHHHHhCCCCc-------------h
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA----PHDK-AHVIVAESSDLRRIQDKIAELLKFKIE-------------E 221 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~ 221 (997)
.-.++.|+|++|+||||+|..++....... .-.. +|++....++..++.. ++..++.+.. .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 347999999999999999999998743211 1224 8998888777776643 4555554321 1
Q ss_pred hhHHHHHHHHHHHHHhc-CCcEEEEEcccccc
Q 038902 222 EDELQRRATLAKRLRER-TKKVLIILDDVREK 252 (997)
Q Consensus 222 ~~~~~~~~~l~~~l~~~-~k~~LlvlDdv~~~ 252 (997)
.........+.+.+... .+.-+||+|.+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 11112233344444431 35668888876543
No 259
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.60 E-value=0.47 Score=52.63 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEc
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVA 199 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~ 199 (997)
...++|.++|.+|+||||++..++..+..........++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34789999999999999999999998876423333445443
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.59 E-value=0.012 Score=58.21 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 145 SSKALNSIMKLLKD---DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 145 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
|...++.+.+.+.. ....+|+|+|+.|+||||+++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55667777777654 34579999999999999999999987754
No 261
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.58 E-value=0.022 Score=58.19 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=29.1
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 149 LNSIMKLLKDD--KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 149 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+..|+... +...|.++|++|+|||++|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44466777653 24579999999999999999999864
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.52 E-value=0.045 Score=59.17 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch------hhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE------EDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 233 (997)
.-+++.|.|.+|+||||||..++...... ...++|++....++.. .+..++.+.+. .+..+....+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 35699999999999999999999876542 2344899987776643 24556654221 122333333333
Q ss_pred HHHhcCCcEEEEEcccccc
Q 038902 234 RLRERTKKVLIILDDVREK 252 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~ 252 (997)
..+. .+.-+||+|.+...
T Consensus 136 l~~~-~~~~lVVIDsl~~l 153 (356)
T 1u94_A 136 LARS-GAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHH-TCCSEEEEECGGGC
T ss_pred HHhc-cCCCEEEEcCHHHh
Confidence 3333 35568999987543
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.51 E-value=0.051 Score=59.69 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhC----CCce-EEEEEccCCCHHHHHHHHHHHhCCCCc-------------hh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIA----PHDK-AHVIVAESSDLRRIQDKIAELLKFKIE-------------EE 222 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~~ 222 (997)
-.++.|+|++|+|||||+..++-...... .-.. +|++....++..++. .+++.++.... ..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999998764432211 1233 888877666665543 36666665321 01
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 223 DELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
........+.+.+.. .+.-+||+|.+...
T Consensus 257 ~~~~~l~~~~~~l~~-~~~~llVIDs~t~~ 285 (400)
T 3lda_A 257 HQLRLLDAAAQMMSE-SRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHh-cCCceEEecchhhh
Confidence 112233334444444 46778888976543
No 264
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.51 E-value=0.047 Score=60.31 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHHHhCCC------C-------chh-
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAELLKFK------I-------EEE- 222 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~~l~~~------~-------~~~- 222 (997)
.+-+.++|+|..|+|||+|+..+++..... +-+. +++-+.+. ..+.++.+++...-..+ . .++
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 345789999999999999999999875332 3355 77777655 35667777776652221 0 011
Q ss_pred -----hHHHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 223 -----DELQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 223 -----~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
......-.+.+++++ .++.+||++||+...
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 112345567789988 899999999998543
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.46 E-value=0.015 Score=57.93 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=31.5
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 148 ALNSIMKLLKD--DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 148 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
-+++|.+.+.. ....+|+|+|+.|+|||||++.+......
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44556666543 45679999999999999999999988764
No 266
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.43 E-value=0.029 Score=62.18 Aligned_cols=92 Identities=22% Similarity=0.258 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC-CHHHHHHHHHHHhCCC-------C-------chh-
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS-DLRRIQDKIAELLKFK-------I-------EEE- 222 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~-~~~~~~~~i~~~l~~~-------~-------~~~- 222 (997)
+-+.++|+|..|+|||+|+..+.+..... +-+. +++-+.+.. ...++..++...-..+ . .++
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 45789999999999999999999875432 3355 777776654 5677777776542221 0 011
Q ss_pred -----hHHHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 223 -----DELQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 223 -----~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
......-.+.+++++ .++.+|+++||+...
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 113345567789998 899999999998543
No 267
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.38 E-value=0.06 Score=57.71 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhC---------CC-----ce-EEEEEccCCCHHHHHHHHHHHhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIA---------PH-----DK-AHVIVAESSDLRRIQDKIAELLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~-~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (997)
.-.++.|+|++|+||||+|..++....... .. .. +|++....++..++.. +++.++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 347999999999999999999997642110 11 34 8998888877777764 45566554
No 268
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.38 E-value=0.0081 Score=64.08 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=59.7
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhh-CCCceEEEEEccCC-CHHHHHHHHHHHh-CCCCchh----
Q 038902 151 SIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQIDTI-APHDKAHVIVAESS-DLRRIQDKIAELL-KFKIEEE---- 222 (997)
Q Consensus 151 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~wv~v~~~~-~~~~~~~~i~~~l-~~~~~~~---- 222 (997)
+.++.+.- ..-+.++|+|..|+|||+|+..+++..... ..+.++++-+.+.. .+.++.+++...+ ....++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r 243 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQ 243 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHH
Confidence 44555532 445789999999999999999999876542 24445666665442 1111111111000 0011111
Q ss_pred -hHHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 223 -DELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 223 -~~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
......-.+.+++++.++.+||++||+...
T Consensus 244 ~~~a~~altiAEyfrd~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 244 VKVAELTLEMAKRLVEFNYDVVILLDSLTRL 274 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 112234456777877889999999999654
No 269
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.23 E-value=0.047 Score=59.23 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAKR 234 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 234 (997)
-+++.|.|++|+||||||..++...... ...++|++....++.. .+..++.+.+ ..+..+....+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 4689999999999999999998876542 2344999988766543 2555665422 12333344444443
Q ss_pred HHhcCCcEEEEEcccccc
Q 038902 235 LRERTKKVLIILDDVREK 252 (997)
Q Consensus 235 l~~~~k~~LlvlDdv~~~ 252 (997)
++. .+.-+||+|.+...
T Consensus 148 ~~~-~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 148 VRS-GAIDVVVVDSVAAL 164 (366)
T ss_dssp HTT-TCCSEEEEECTTTC
T ss_pred Hhc-CCCCEEEEeChHHh
Confidence 333 35568999987543
No 270
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.22 E-value=0.064 Score=54.21 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhh---C-CCce-EEEEEccCCCHHHHHHHHHHHhCC
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTI---A-PHDK-AHVIVAESSDLRRIQDKIAELLKF 217 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~-~wv~v~~~~~~~~~~~~i~~~l~~ 217 (997)
-.+++|+|++|+|||||++.++...... . .-.. +|+.-........ ...+.+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4699999999999999999999754321 1 1223 7777554444333 3344444443
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.051 Score=57.21 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
..++++|+|++|+||||++..++.............+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457999999999999999999998876422233344443
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.04 E-value=0.023 Score=64.34 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 6999999999888777654 4788999999999999999998664
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.03 E-value=0.31 Score=53.82 Aligned_cols=28 Identities=36% Similarity=0.272 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++|.++|++|+||||++..++...+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999988865
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.94 E-value=0.014 Score=55.96 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.88 E-value=0.014 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|.|+|+.|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.85 E-value=0.017 Score=57.16 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
....+|+|+|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 446799999999999999999999876
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.84 E-value=0.016 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..++|.|+|+.|+||||+|+.+++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998763
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.81 E-value=0.016 Score=56.16 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999998653
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.78 E-value=0.086 Score=56.99 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCC----ce-EEEEEccCCCHHHHHHHHHHHhCCCCc-------------h
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPH----DK-AHVIVAESSDLRRIQDKIAELLKFKIE-------------E 221 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~ 221 (997)
.-.++.|+|++|+|||||++.++......... .. +|++....+...++ ..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999999875321111 34 88887665544443 335554443210 1
Q ss_pred hhHHHHHHHHHHHHHhc----CCcEEEEEccccc
Q 038902 222 EDELQRRATLAKRLRER----TKKVLIILDDVRE 251 (997)
Q Consensus 222 ~~~~~~~~~l~~~l~~~----~k~~LlvlDdv~~ 251 (997)
.........+...+.+. .+.=+||+|.+..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 11122233334444321 3677899998754
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.71 E-value=0.021 Score=56.49 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
....+|+|+|+.|+||||+|+.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999876
No 281
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.70 E-value=0.02 Score=61.89 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=37.9
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|++..++.+...+..+ +-+.++|++|+|||++|+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6899999999988877654 4688999999999999999998763
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.69 E-value=0.018 Score=56.46 Aligned_cols=25 Identities=48% Similarity=0.538 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
...+++|+|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.67 E-value=0.07 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.+++|+|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999844
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.67 E-value=0.015 Score=55.88 Aligned_cols=25 Identities=52% Similarity=0.638 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 285
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.65 E-value=0.021 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999988753
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.62 E-value=0.018 Score=55.45 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQL 181 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~ 181 (997)
.+|+|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.61 E-value=0.02 Score=55.78 Aligned_cols=26 Identities=38% Similarity=0.387 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+.|.|+|+.|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998763
No 288
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.54 E-value=0.03 Score=56.58 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 147 KALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 147 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+.+.+.+......+|+|+|.+|+|||||+..+......
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 33455555555556789999999999999999999987643
No 289
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.46 E-value=0.044 Score=60.15 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh----------hCCCceEEEEEccC-CCHHHHHHHHHHHhCCC--------Cc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT----------IAPHDKAHVIVAES-SDLRRIQDKIAELLKFK--------IE 220 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~----------~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~ 220 (997)
+-+.++|+|..|+|||+|+..+++.... ...|-++++-+.+. ..+.++..++...-..+ .+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3467899999999999999999987653 12233377777654 34566666654421111 11
Q ss_pred hh-----hHHHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 221 EE-----DELQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 221 ~~-----~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
+. ......-.+.+++++ .++.+|+++||+...
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11 112344567888887 589999999998543
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.43 E-value=0.043 Score=58.44 Aligned_cols=44 Identities=32% Similarity=0.491 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHh----ccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 144 HSSKALNSIMKLL----KDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 144 gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.-+.-.+++++.+ ..+....|.|+|+.|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3344445555544 3455677999999999999999999987654
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.39 E-value=0.018 Score=56.19 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++++|+|+.|+|||||++.+......
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 57999999999999999999987653
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.39 E-value=0.2 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...++|+|+|++|+||||++..++.....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34679999999999999999999988865
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.33 E-value=0.023 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999764
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.33 E-value=0.024 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.33 E-value=0.02 Score=56.67 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 296
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.32 E-value=0.048 Score=59.83 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh---hCCCceEEEEEccC-CCHHHHHHHHHHHhCCC-------Cchhh-----
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT---IAPHDKAHVIVAES-SDLRRIQDKIAELLKFK-------IEEED----- 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~---~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~----- 223 (997)
+-+.++|+|..|+|||+|+..+++.... ...|-++++-+.+. ..+.++.+++...-..+ ..++.
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 3456899999999999999999987654 12233377777654 45666767665431111 01111
Q ss_pred -HHHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 224 -ELQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 224 -~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++ .++++|+++||+...
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 12344567888987 589999999999543
No 297
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.28 E-value=0.043 Score=53.31 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=28.8
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 149 LNSIMKLLKD-DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 149 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+..+..++.+ .+.+.+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555543 2234799999999999999999999874
No 298
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.28 E-value=0.043 Score=57.52 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
....+|+|+|+.|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999988764
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.27 E-value=0.027 Score=58.05 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|.|+|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998763
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.26 E-value=0.028 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.26 E-value=0.032 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+|.|+|+.|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998764
No 302
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.25 E-value=0.4 Score=51.01 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC--CHHHHHHHHHHHhCC
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS--DLRRIQDKIAELLKF 217 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~--~~~~~~~~i~~~l~~ 217 (997)
.+..+++|+|++|+||||+++.++...+.. ... +.+.-...+ ...+-.....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~-V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFS-VVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCC-EEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCE-EEEEeecccccchHHHHHHHHHHcCc
Confidence 457899999999999999999999887653 222 333333333 233334445556654
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.25 E-value=0.069 Score=48.35 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=14.5
Q ss_pred cCCEEEcCCCCccCCC--cccccCcccEEEecCC
Q 038902 567 KLRSLRAENTHLEKAP--LKKEFKELVILILRGS 598 (997)
Q Consensus 567 ~L~~L~L~~~~l~~lp--~~~~l~~L~~L~L~~~ 598 (997)
+|++|+|++|.|+.+| .+..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444444443 3344444444444444
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.24 E-value=0.027 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.22 E-value=0.026 Score=55.22 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
.+++|+|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.22 E-value=0.029 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..++|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 307
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.20 E-value=0.024 Score=54.63 Aligned_cols=25 Identities=48% Similarity=0.519 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|.|+|+.|+||||+|+.+++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.19 E-value=0.029 Score=54.92 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+|.|.|+.|+||||+|+.+++....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998753
No 309
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.18 E-value=0.06 Score=59.20 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
No 310
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.18 E-value=0.25 Score=54.47 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHH--HHHHHHHhCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRI--QDKIAELLKF 217 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~--~~~i~~~l~~ 217 (997)
..++|+|+|++|+||||++..++...... ......++. ..+..... +.......+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAA-DTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEC-CSSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeec-cccCchhHHHHHHhcccCCc
Confidence 46799999999999999999999888653 222244443 33433322 2334445554
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.18 E-value=0.028 Score=55.90 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998654
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.13 E-value=0.035 Score=55.75 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 146 SKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 146 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+..+.+.+.+.....++|+|+|.+|+|||||+..+......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 344555555554456789999999999999999999987643
No 313
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.13 E-value=1.9 Score=48.42 Aligned_cols=89 Identities=11% Similarity=0.217 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHhc-CCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEE
Q 038902 117 SELAKDKITKIDELMAS-RDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAH 195 (997)
Q Consensus 117 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~w 195 (997)
..-+.+..+++++.... .....++. |- ..++++..-+ ..-.++.|.|.+|+||||+|..++...........+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i~t--G~-~~LD~~~gGl--~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 163 KDILVQTYDNIEMLHNRDGEITGIPT--GF-TELDRMTSGF--QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCSBCC--SC-HHHHHHHSSB--CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCC--Cc-HHHHhhcCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 34445555555554332 22222221 22 2345544222 2446999999999999999999998876532223466
Q ss_pred EEEccCCCHHHHHHHHH
Q 038902 196 VIVAESSDLRRIQDKIA 212 (997)
Q Consensus 196 v~v~~~~~~~~~~~~i~ 212 (997)
++.. .+..++...++
T Consensus 238 ~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 238 FSLE--MSAQQLVMRML 252 (454)
T ss_dssp EESS--SCHHHHHHHHH
T ss_pred EECC--CCHHHHHHHHH
Confidence 6543 34566666654
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.12 E-value=0.022 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLA 182 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~ 182 (997)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.10 E-value=0.025 Score=55.77 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999988654
No 316
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.08 E-value=0.032 Score=54.30 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=16.5
Q ss_pred CcccEEEecCCccc-----ccCccccCCCCCcEEeccCC
Q 038902 588 KELVILILRGSSIR-----ELPKGLERWINLKLLDLSNN 621 (997)
Q Consensus 588 ~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~ 621 (997)
..|++|+|++|.|. .+...+..-+.|+.|+++++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 44555555555443 22333444455666666544
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.04 E-value=0.038 Score=52.37 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++++|+|+.|+|||||+..+...++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999998764
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.03 E-value=0.033 Score=55.57 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998765
No 319
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.02 E-value=0.047 Score=59.70 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=36.5
Q ss_pred cccccHHHHHHHHHHhc-------------c--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 141 DLTHSSKALNSIMKLLK-------------D--DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 47899988888877772 1 134578999999999999999999876
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.02 E-value=0.032 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+..+|+|+|+.|+||||+++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999998764
No 321
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.99 E-value=0.092 Score=58.12 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccC-CCHHHHHHHHHHHhCCC--------Cchh-----h
Q 038902 159 DKVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAES-SDLRRIQDKIAELLKFK--------IEEE-----D 223 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~~-----~ 223 (997)
..-+.++|+|..|+|||+|| ..+.+... ..+.++++-+.+. ..+.++.+++...-..+ .++. .
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~~--~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQRD--SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTSS--SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhcc--CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 34568899999999999996 56666421 2333477777765 35666777765542221 1111 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++.+||++||+...
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 12334467788888899999999998543
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.98 E-value=0.033 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 323
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.97 E-value=0.031 Score=52.62 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..-.+++|+|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999999876
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.95 E-value=0.033 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997754
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.94 E-value=0.028 Score=54.44 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|.|+|+.|+||||+|+.+++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998763
No 326
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.94 E-value=0.032 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.91 E-value=0.02 Score=55.47 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
|.|.|+||.|+|||||++++..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987654
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.90 E-value=0.033 Score=56.24 Aligned_cols=25 Identities=36% Similarity=0.745 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998753
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.86 E-value=0.04 Score=54.82 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.++|.|.|++|+||||.|+.+++++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998763
No 330
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.86 E-value=0.051 Score=60.06 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCC---CceEEEEEccC-CCHHHHHHHHHHHhCCC--------Cch-----h
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAP---HDKAHVIVAES-SDLRRIQDKIAELLKFK--------IEE-----E 222 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~~wv~v~~~-~~~~~~~~~i~~~l~~~--------~~~-----~ 222 (997)
+-+.++|+|..|+|||+|+..+++.....+. +-++++-+.+. ..+.++..++...-..+ .++ .
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 4467889999999999999999988654211 22367766655 35667777776542211 111 1
Q ss_pred hHHHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 038902 223 DELQRRATLAKRLRE-RTKKVLIILDDVREK 252 (997)
Q Consensus 223 ~~~~~~~~l~~~l~~-~~k~~LlvlDdv~~~ 252 (997)
......-.+.+++++ .++.+|+++||+...
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 112344567788883 799999999998543
No 331
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.85 E-value=0.11 Score=57.97 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHH-HHHHHHHHhhh------CCCceEEEEEccCC-CHHHHHHHHHHHhCCC-------CchhhH
Q 038902 160 KVNIIGLQGPGGIGKSTL-MEQLAKQIDTI------APHDKAHVIVAESS-DLRRIQDKIAELLKFK-------IEEEDE 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtL-a~~~~~~~~~~------~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~ 224 (997)
.-+.++|+|..|+|||+| +..+.+..... ..+-++++-+.+.. .+.++.+++...-..+ ...+..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 456889999999999999 45777766531 23334777777653 4666666665532211 011111
Q ss_pred ------HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 ------LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ------~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++.+||++||+...
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 2234457788888899999999998543
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.85 E-value=0.03 Score=55.51 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..++|.|+|+.|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999998763
No 333
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.85 E-value=0.086 Score=58.57 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCCC-------chhhH------
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFKI-------EEEDE------ 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~------ 224 (997)
+-+.++|+|..|+|||+|| ..+++... ..+-++++-+.+.. .+.++.+++...-..+. ..+..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 4567899999999999995 57776542 12223777776553 45666666665322211 11111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++.+||++||+...
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 2233467788888899999999998543
No 334
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.81 E-value=0.031 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|+|||||++.+.....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999998753
No 335
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.80 E-value=0.056 Score=60.03 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCC--------Cchhh-----H
Q 038902 160 KVNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFK--------IEEED-----E 224 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~--------~~~~~-----~ 224 (997)
.-+.++|+|..|+|||+|| ..+++... ..+-++++-+.+.. .+.++.+++...-..+ .++.. .
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 3467899999999999995 57776542 12223777776553 4566666665532211 11111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 225 LQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 225 ~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
....-.+.+++++.++.+||++||+...
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 2234467788888899999999998543
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.04 Score=54.04 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998653
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.76 E-value=0.032 Score=55.32 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 338
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.74 E-value=0.045 Score=58.08 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE 200 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~ 200 (997)
++.+||+|.|-|||||||.|--++--+... -....-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 568999999999999999999998887653 23346667654
No 339
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.73 E-value=0.039 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=36.9
Q ss_pred CccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 137 HSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 137 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+.+++|.+..++.+..........-+.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34457899988666554444333334589999999999999999998764
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.73 E-value=0.038 Score=54.29 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|.|+.|+||||+|+.+++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998763
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.72 E-value=0.03 Score=54.39 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|.|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.69 E-value=0.042 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...|+|.|+.|+||||+|+.+++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998753
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.69 E-value=0.035 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 344
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.69 E-value=0.19 Score=51.19 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDK 210 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~ 210 (997)
-.++.|.|++|+||||+|..++...... ....+|++... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccC--CHHHHHHH
Confidence 4689999999999999999887765432 22337776543 34444443
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.66 E-value=0.039 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
...+|+|+|+.|+||||+|+.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999986
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.59 E-value=0.037 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.57 E-value=0.039 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|+|+.|+||||+++.+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999998764
No 348
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.57 E-value=0.038 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+++|+|+.|+|||||++.++...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998875
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.56 E-value=0.058 Score=59.68 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD--------------DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|.+..++.+...+.. -..+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578888887777655521 1246789999999999999999998764
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.54 E-value=0.041 Score=54.20 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|+|.|+.|+||||+|+.+++...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 351
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.51 E-value=0.049 Score=57.77 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
....+|+|+|+.|+|||||++.+......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999988764
No 352
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.50 E-value=0.049 Score=55.79 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
....+|+|.|+.|+|||||++.+.....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998753
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.047 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+|.|.|+.|+||||+|+.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999998764
No 354
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.47 E-value=0.044 Score=54.13 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
....+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999875
No 355
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.46 E-value=0.52 Score=53.23 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEE
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIV 198 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v 198 (997)
...++|+|+|.+|+||||++..++..+... ......|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 346899999999999999999999887653 334444444
No 356
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.45 E-value=0.072 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+|.|.|++|+||||+|+.+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 357
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.44 E-value=0.034 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999865
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.43 E-value=0.046 Score=54.06 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999764
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.40 E-value=0.05 Score=57.46 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+..+++|+|++|+||||+++.++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988764
No 360
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.36 E-value=0.063 Score=52.19 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=8.4
Q ss_pred ccCCCCCcEEeccCCc
Q 038902 607 LERWINLKLLDLSNNI 622 (997)
Q Consensus 607 ~~~l~~L~~L~l~~~~ 622 (997)
+..-+.|++|+|++|.
T Consensus 94 L~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 94 IETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHCSSCCEEECCSSB
T ss_pred HhcCCccCeEecCCCc
Confidence 3344555555555554
No 361
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.36 E-value=0.11 Score=58.47 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHH----HhCCC----------Cchh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAE----LLKFK----------IEEE 222 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~----~l~~~----------~~~~ 222 (997)
.+-+.++|+|..|+|||+|+..+++.. +-+. +++-+.+. ..+.+++.++-+ ..+.. ...+
T Consensus 230 grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~ 305 (600)
T 3vr4_A 230 TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNM 305 (600)
T ss_dssp BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTS
T ss_pred cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCC
Confidence 345789999999999999999998763 2345 77777765 345555544322 11210 0011
Q ss_pred h------HHHHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 223 D------ELQRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 223 ~------~~~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
. .....-.+.+++++.++.+||++|++..
T Consensus 306 p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 306 PVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 1 1223445678888889999999999853
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.35 E-value=0.047 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 357999999999999999999998764
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.33 E-value=0.052 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 364
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.30 E-value=0.13 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=16.7
Q ss_pred CccEEEccCCCCCCCChhHhhcCccccEEEecCcc
Q 038902 520 QLLTLFLQHNAFDKIPPGFFEHMREINFLDLSYTN 554 (997)
Q Consensus 520 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 554 (997)
+|+.|+|++|.+..++...|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444554444444444444444444444444443
No 365
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.29 E-value=0.063 Score=59.74 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHHhhhCCCceEEEEEccCC-CHHHHHHHHHHHhCCC--------Cch-----hhHH
Q 038902 161 VNIIGLQGPGGIGKSTLM-EQLAKQIDTIAPHDKAHVIVAESS-DLRRIQDKIAELLKFK--------IEE-----EDEL 225 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~wv~v~~~~-~~~~~~~~i~~~l~~~--------~~~-----~~~~ 225 (997)
-+.++|+|..|+|||+|| ..+++... ..+-++++-+.+.. .+.++.+++...-..+ .++ ....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 467899999999999995 57776542 23334777776553 4555555554321111 111 1123
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 226 QRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 226 ~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
...-.+.+++++.++.+||++||+...
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 455567788888899999999998543
No 366
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.28 E-value=0.045 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 367
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.27 E-value=1.1 Score=47.62 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHh-c-CCCCccccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEE
Q 038902 118 ELAKDKITKIDELMA-S-RDIHSVSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAH 195 (997)
Q Consensus 118 ~~i~~~~~~~~~~~~-~-~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~w 195 (997)
.-+.+..+++++... . ....+++. | -.+++++..-+ ..-.++.|.|.+|+||||+|..++...... ....+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~gi~T--G-~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~ 79 (338)
T 4a1f_A 6 EVLESAMDLITENQRKGSLEVTGIPT--G-FVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAV 79 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSBCC--S-CHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCcCcccC--C-ChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 344555555665544 2 23333331 1 23445444322 334689999999999999999999887651 222355
Q ss_pred EEEccCCCHHHHHHHHHHH
Q 038902 196 VIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~ 214 (997)
++. .-+..++...++..
T Consensus 80 fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 80 FSL--EMSAEQLALRALSD 96 (338)
T ss_dssp EES--SSCHHHHHHHHHHH
T ss_pred EeC--CCCHHHHHHHHHHH
Confidence 544 45677777777654
No 368
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.24 E-value=0.45 Score=49.94 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..++++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988765
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.24 E-value=0.036 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 370
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.23 E-value=0.41 Score=50.86 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~ 214 (997)
.-.++.|.|.+|+||||+|..++....... .. +|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446999999999999999999997765432 34 776654 5567777776654
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.21 E-value=0.053 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 372
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.63 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
....|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998764
No 373
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.19 E-value=0.048 Score=55.40 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998654
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.18 E-value=0.051 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.14 E-value=0.13 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.13 E-value=0.062 Score=56.71 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSD 203 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~ 203 (997)
...+++|+|++|+||||+++.++...+.. -..+.+.-...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccc
Confidence 45799999999999999999999887652 1225544434443
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.08 E-value=0.08 Score=56.10 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+|+|.|+.|+||||+|+.+......
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4569999999999999999999887653
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.08 E-value=0.052 Score=53.92 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998743
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.06 E-value=0.056 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.06 E-value=0.11 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999988754
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.05 E-value=0.059 Score=52.63 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+|+|.|+.|+||||+|+.+.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999864
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.01 E-value=0.19 Score=65.54 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (997)
..+.|.|+|++|+|||+||.++....... ...++++++...++... ++.++.+.+ ....+.....+++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 46799999999999999999999876542 33448888877766655 555663321 1122233344444
Q ss_pred HHHhcCCcEEEEEcccc
Q 038902 234 RLRERTKKVLIILDDVR 250 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~ 250 (997)
..++ .+.-+||+|.+.
T Consensus 1500 lvr~-~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARS-GAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHH-TCCSEEEESCGG
T ss_pred HHhc-CCCCEEEEcChh
Confidence 4444 577899999985
No 383
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.00 E-value=0.06 Score=55.66 Aligned_cols=26 Identities=42% Similarity=0.611 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998865
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.99 E-value=0.062 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...|.|.|+.|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.92 E-value=0.06 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998764
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.92 E-value=0.06 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998764
No 387
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.90 E-value=0.06 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 388
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.90 E-value=0.046 Score=54.18 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
-.+++|+|+.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999976
No 389
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.82 E-value=0.064 Score=55.15 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
....+|+|.|+.|+||||+|+.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999998764
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.82 E-value=0.11 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999875
No 391
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.80 E-value=0.5 Score=52.97 Aligned_cols=53 Identities=6% Similarity=-0.015 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
.-.++.|.|.+|+||||+|..++...........+|++.. -+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3468999999999999999999988764322334666553 4566777776543
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.79 E-value=0.047 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 393
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.77 E-value=0.037 Score=55.32 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCch---hhHHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIEE---EDELQRRATLAKRLR 236 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~ 236 (997)
.-.++.|+|+.|+||||++..++++.... ....+.+.-.. +.. -...+++.++...+. ....+..+.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 34688999999999999999999988653 22333332222 222 222455556554322 111222222222222
Q ss_pred hcCCcEEEEEcccccc--ccccccccccCCCCCceEEEEeeCCh
Q 038902 237 ERTKKVLIILDDVREK--INLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 237 ~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
+ ++.-+||+|.+... +..+.+ ..+.+ .|-.||+|-+..
T Consensus 87 ~-~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 N-DETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp C-TTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred C-CCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 2 23459999999753 222222 11111 266788888754
No 394
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.76 E-value=0.081 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998764
No 395
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.75 E-value=0.046 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998644
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.64 E-value=0.071 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..+|+|.|+.|+||||+|+.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 397
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.64 E-value=0.035 Score=55.44 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.+|+|.|+.|+||||+|+.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988753
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.63 E-value=0.066 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 399
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.62 E-value=0.31 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..++|.|++|+||||+|+.+++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 400
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.61 E-value=0.35 Score=46.70 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc---CCCHHHHHHHHHHHhCC---------CCchh---hH--
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE---SSDLRRIQDKIAELLKF---------KIEEE---DE-- 224 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~---~~~~~~~~~~i~~~l~~---------~~~~~---~~-- 224 (997)
..|-|++..|.||||.|-..+-+.-.. -+....+-.-+ ......++.. ++. ..... .+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHHH
Confidence 456666667799999999999887543 33444443322 2223333333 321 11111 11
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEcccccc-----ccccccccccCCCCCceEEEEeeCCh
Q 038902 225 --LQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGEERKRCKVIVTSRRL 278 (997)
Q Consensus 225 --~~~~~~l~~~l~~~~k~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~ 278 (997)
......+++.+.+ ++-=|||||++... ...+.+...+........||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~-~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLAD-PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTC-TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1222233344433 45569999999553 22223323333334567899999985
No 401
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.61 E-value=0.14 Score=57.19 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCC-CHHHHHHHHHH----HhCC----------CCchhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESS-DLRRIQDKIAE----LLKF----------KIEEED 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~-~~~~~~~~i~~----~l~~----------~~~~~~ 223 (997)
+-+.++|+|..|+|||+|+..+++.. +-+. +++-+.+.. .+.++..++-+ ..+. ....+.
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 45789999999999999999987653 3355 777777654 45566655432 1110 001111
Q ss_pred ------HHHHHHHHHHHHHhcCCcEEEEEcccccc
Q 038902 224 ------ELQRRATLAKRLRERTKKVLIILDDVREK 252 (997)
Q Consensus 224 ------~~~~~~~l~~~l~~~~k~~LlvlDdv~~~ 252 (997)
.....-.+.+++++.++.+||++|++...
T Consensus 302 ~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 302 VAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 12334456788888899999999999643
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.60 E-value=0.042 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
++++|+|+.|+|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 68999999999999999999988765
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.59 E-value=0.08 Score=57.07 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+++|+|++|+||||+++.++...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4579999999999999999999988765
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.56 E-value=0.061 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
-.+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.56 E-value=0.06 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...|.|.|+.|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 406
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.34 Score=49.39 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKI 211 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i 211 (997)
-.++.|.|.+|+|||++|..++.+.........++++.. ....++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc--CCHHHHHHHH
Confidence 468999999999999999998765332212233555443 4455555544
No 407
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.55 E-value=0.064 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 408
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.52 E-value=0.043 Score=55.60 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLA-KQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~-~~~ 185 (997)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 654
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.52 E-value=0.083 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
.++++|+|+.|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999988654
No 410
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.49 E-value=0.31 Score=48.80 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
...|.|-|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999988753
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.49 E-value=0.12 Score=52.06 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
....|+|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.48 E-value=0.08 Score=52.71 Aligned_cols=28 Identities=36% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999998876
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.46 E-value=0.065 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 414
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.43 E-value=0.056 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998543
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.40 E-value=0.057 Score=55.75 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.38 E-value=0.057 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 417
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.36 E-value=0.05 Score=54.12 Aligned_cols=25 Identities=36% Similarity=0.832 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998644
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.31 E-value=0.069 Score=54.73 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
-.+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 419
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.29 E-value=0.06 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999998654
No 420
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.28 E-value=0.06 Score=55.65 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|+|||||++.++.-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999986543
No 421
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.27 E-value=0.06 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 422
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.24 E-value=0.072 Score=55.17 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 423
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.23 E-value=0.063 Score=54.20 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
-.+++|+|+.|+|||||++.++.-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999986543
No 424
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.21 E-value=0.11 Score=58.17 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccC-CCHHHHHHHHHH----HhCCC----------Cchhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAES-SDLRRIQDKIAE----LLKFK----------IEEED 223 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~-~~~~~~~~~i~~----~l~~~----------~~~~~ 223 (997)
+-+.++|+|..|+|||+|+..+++.. +-+. +++-+.+. ..+.++..++-+ ..+.. ...+.
T Consensus 220 rGqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p 295 (578)
T 3gqb_A 220 MGGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMP 295 (578)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSC
T ss_pred CCCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCC
Confidence 45789999999999999999998764 2345 77777765 344445444322 11210 00111
Q ss_pred ------HHHHHHHHHHHHHhcCCcEEEEEccccc
Q 038902 224 ------ELQRRATLAKRLRERTKKVLIILDDVRE 251 (997)
Q Consensus 224 ------~~~~~~~l~~~l~~~~k~~LlvlDdv~~ 251 (997)
.....-.+.+++++.++.+||++|++..
T Consensus 296 ~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 329 (578)
T 3gqb_A 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSR 329 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHH
Confidence 1223445678888889999999999854
No 425
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.21 E-value=0.18 Score=54.72 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=30.4
Q ss_pred HHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 149 LNSIMKLLK--DDKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 149 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...+++.+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555553 356789999999999999999999987654
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.21 E-value=0.076 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|.|+|+.|+||||||..+++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999999754
No 427
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.19 E-value=0.087 Score=52.01 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+|.|.|++|+||||.|+.+++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999998763
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.17 E-value=0.062 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.14 E-value=0.091 Score=55.79 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998765
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.14 E-value=0.08 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
++|.|+|+.|+||||||+.+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999864
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.08 E-value=0.09 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998764
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.06 E-value=0.067 Score=54.92 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998643
No 433
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.04 E-value=0.07 Score=54.41 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999854
No 434
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.01 E-value=0.085 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999865
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.97 E-value=0.068 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 436
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.95 E-value=0.07 Score=54.49 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
-.+++|+|+.|+|||||++.++.-.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 437
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.93 E-value=0.11 Score=60.99 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=39.0
Q ss_pred cccccccHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 139 VSDLTHSSKALNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 139 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
+.+++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 337899999888888777655 5899999999999999999998764
No 438
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.93 E-value=0.27 Score=51.87 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAE 213 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~ 213 (997)
..-.+++|+|++|+|||||++.++........-..+|+... ....++...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e--~~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE--ESVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc--CCHHHHHHHHHH
Confidence 34569999999999999999999988765311123555543 234445444443
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.91 E-value=0.092 Score=54.73 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999864
No 440
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.85 E-value=0.15 Score=52.47 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc-CCCHHHHHHHHHH--HhCCCCchhhHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE-SSDLRRIQDKIAE--LLKFKIEEEDELQRRATLAKRL 235 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~~l 235 (997)
..-.+++|+|+.|+||||+++.+........ -..+++.-.. .+-.... ..+.. .++.. . ......+...|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~-~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~--~---~~l~~~la~aL 95 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVFKHK-KSIVNQREVGED--T---KSFADALRAAL 95 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEEEBTTT--B---SCHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCC-CCEEEEcCCcceeecCCc-ceeeeHHHhCCC--H---HHHHHHHHHHH
Confidence 4457999999999999999999998765421 1223332111 0000000 00000 01111 0 12245667777
Q ss_pred HhcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChh
Q 038902 236 RERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLD 279 (997)
Q Consensus 236 ~~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~ 279 (997)
.. ++=+|++|+..+.+....+.... ..|.-|++||.+..
T Consensus 96 ~~--~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 RE--DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HH--CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hh--CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 76 66688889987543332221111 23556777776653
No 441
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.82 E-value=0.25 Score=52.42 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=33.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCC
Q 038902 158 DDKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSD 203 (997)
Q Consensus 158 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~ 203 (997)
....++|+|+|-||+||||+|..++..+... .....-|+.....+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~ 82 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDPKHD 82 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESSSCC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCCCC
Confidence 3467899999999999999999999888763 33447777765443
No 442
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.81 E-value=0.11 Score=57.89 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSD 203 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~ 203 (997)
...+++|+|++|+|||||++.++...+.. -..+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccc
Confidence 35799999999999999999999887642 1225554444443
No 443
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.78 E-value=0.071 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.++|.|+|+.|+||||||..+++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999754
No 444
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.76 E-value=0.1 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.76 E-value=0.074 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998643
No 446
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.76 E-value=0.79 Score=51.15 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAEL 214 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~ 214 (997)
.-.++.|.|.+|+||||+|..++...... ....++++.. -+..++...+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC--CCHHHHHHHHHHH
Confidence 34689999999999999999999887653 2223665443 4455666655543
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.74 E-value=0.1 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.|.|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 448
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.72 E-value=0.076 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.-.+++|+|+.|+|||||++.++.-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999986543
No 449
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.71 E-value=0.097 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.|.|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.71 E-value=0.076 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 451
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.69 E-value=0.092 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.|+|+|.+|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.64 E-value=0.077 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998543
No 453
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.64 E-value=0.077 Score=55.02 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 454
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.62 E-value=0.1 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
..|.|.|+.|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 455
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.62 E-value=0.14 Score=54.50 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...++|+|+|++|+||||++..++.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999988765
No 456
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.53 E-value=0.11 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...|.|.|+.|+||||+|+.+++.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998864
No 457
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.51 E-value=0.076 Score=55.74 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEcc
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAE 200 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~ 200 (997)
+..+|+|.|+.|+||||+|+.+.+.+... .+....++...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~ 43 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDA 43 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecch
Confidence 45689999999999999999999876532 23334454433
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.46 E-value=0.1 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~ 183 (997)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 459
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.44 E-value=0.69 Score=45.79 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
...|.|-|+.|+||||+++.+.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998865
No 460
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.27 E-value=0.11 Score=54.65 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999999876
No 461
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.25 E-value=0.4 Score=57.28 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=34.4
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 141 DLTHSSKALNSIMKLLKD-------------DKVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 141 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++.|.+..+++|.+.+.- ...+-|.++|++|+|||.+|+++++...
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 556777777777655421 1245678999999999999999998764
No 462
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.23 E-value=0.11 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 463
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.22 E-value=0.75 Score=44.90 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 164 IGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 164 i~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
|+|=|.-|+||||.++.+++.++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6788999999999999999998764
No 464
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.94 E-value=0.1 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999854
No 465
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.91 E-value=0.12 Score=53.49 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997654
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.83 E-value=0.13 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 467
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.77 E-value=0.34 Score=47.92 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCC
Q 038902 163 IIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESS 202 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~ 202 (997)
.|.+.|.||+||||+|..++...... .++...+++..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~ 46 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHG 46 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCC
Confidence 47889999999999999999887653 3455555555443
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.75 E-value=0.15 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.65 E-value=0.76 Score=45.16 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceE
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKA 194 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~ 194 (997)
+-|+|=|..|+||||+++.+++.+.. .++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC--CCCEE
Confidence 35889999999999999999998853 44443
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.65 E-value=0.17 Score=51.38 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
...+|+|+|+.|+||||+++.++....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998653
No 471
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.60 E-value=0.17 Score=52.30 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEE
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVI 197 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~ 197 (997)
...++.++|.||+||||++..++.... . .....-++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEe
Confidence 357889999999999999999998776 3 33444444
No 472
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.58 E-value=0.56 Score=63.53 Aligned_cols=143 Identities=10% Similarity=0.152 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCC------------CchhhHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFK------------IEEEDELQRRA 229 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~ 229 (997)
+-|.++|++|+|||++|+.+..... .+..+.++.+..-+...+++.+...+... ..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~g--------- 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDI--------- 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSS---------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCC---------
Q ss_pred HHHHHHHhcCCcEEEEEccccccc--------cccccccccCCCC------------CceEEEEeeCCh------hhhhc
Q 038902 230 TLAKRLRERTKKVLIILDDVREKI--------NLAVSGIPYGEER------------KRCKVIVTSRRL------DVCSK 283 (997)
Q Consensus 230 ~l~~~l~~~~k~~LlvlDdv~~~~--------~~~~l~~~~~~~~------------~gs~iivTtr~~------~v~~~ 283 (997)
++.++++||+.... ..+.+...+..++ .+..+|-++... .+..+
T Consensus 1336 ----------k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1336 ----------KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ----------SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ----------ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Q ss_pred CCC--eeEEcCCCCHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHh
Q 038902 284 MSD--VTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKAC 326 (997)
Q Consensus 284 ~~~--~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~i~~~~ 326 (997)
+.. ..+.++..+.++-.++|..... ....++...++..+++..
T Consensus 1406 llRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1406 FTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp HHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred hhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.56 E-value=0.48 Score=61.08 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (997)
.-.+|.|.|++|+||||||..++...... ...++|++.....+.. . ++.++.+.+ ..+..+....+++
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 34689999999999999999999887642 2234777776665442 2 666665321 2233444455554
Q ss_pred HHHhcCCcEEEEEcccccc
Q 038902 234 RLRERTKKVLIILDDVREK 252 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~ 252 (997)
.... .+.-+||+|.+...
T Consensus 805 lv~~-~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARS-GAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHH-TCCSEEEESCSTTC
T ss_pred HHHc-cCCCEEEEechhhh
Confidence 4444 45668999998643
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.52 E-value=0.15 Score=55.32 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 475
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.50 E-value=0.98 Score=44.63 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhh
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTI 188 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~ 188 (997)
..|.|-|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999998764
No 476
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.39 E-value=0.14 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.+.+|+|+.|+|||||+++++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998754
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.36 E-value=0.11 Score=54.26 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999998654
No 478
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.29 E-value=0.14 Score=54.98 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.+++|+|+.|+|||||++.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4568999999999999999999843
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.22 E-value=0.13 Score=49.66 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
-+.|.|.|+.|+||||||.+++.+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36789999999999999999987643
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.20 E-value=0.095 Score=55.19 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.-.+++|+|+.|+|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4579999999999999999999854
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.16 E-value=0.17 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.16 E-value=0.13 Score=49.87 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 038902 163 IIGLQGPGGIGKSTLMEQLAK 183 (997)
Q Consensus 163 vi~I~G~~GiGKTtLa~~~~~ 183 (997)
.|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 483
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.14 E-value=0.14 Score=53.58 Aligned_cols=26 Identities=50% Similarity=0.593 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQID 186 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 186 (997)
-.++.|+|++|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999997654
No 484
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.00 E-value=0.14 Score=54.92 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999999654
No 485
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.95 E-value=0.4 Score=51.54 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=34.0
Q ss_pred hccCCceEEEEEcCCCCcHHHHHHHHHHHHhh-hCCCceEEEEEccCCC
Q 038902 156 LKDDKVNIIGLQGPGGIGKSTLMEQLAKQIDT-IAPHDKAHVIVAESSD 203 (997)
Q Consensus 156 l~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~wv~v~~~~~ 203 (997)
+.....+++.+.|.||+||||+|..++..... .......-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 34455689999999999999999999988762 2223336666654443
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.93 E-value=0.64 Score=60.78 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAELLKFKIE------EEDELQRRATLAK 233 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (997)
.-+++.|+|++|+||||||.+++...... .-.++|++.....+.. .++.++.+.+ ..+..+....++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 34699999999999999999999887642 2233888877776643 2566665421 2233444444444
Q ss_pred HHHhcCCcEEEEEcccccc
Q 038902 234 RLRERTKKVLIILDDVREK 252 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~~ 252 (997)
..+. .+.-+||+|-+...
T Consensus 456 lv~~-~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARS-GAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHH-TCCSEEEESCGGGC
T ss_pred HHHh-cCCcEEEECCHHHh
Confidence 4443 45669999998643
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.84 E-value=0.63 Score=60.02 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCce-EEEEEccCCCHHHHHHHHHHHhCCCCch------hhHHHHHHHHHH
Q 038902 161 VNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDK-AHVIVAESSDLRRIQDKIAELLKFKIEE------EDELQRRATLAK 233 (997)
Q Consensus 161 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 233 (997)
-++|-|+|+.|+||||||.++...... .=.. +|++..+..+..- ++.+|.+.+. +..++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~--~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 479999999999999999999987655 3344 8888877776653 8888886542 222333333444
Q ss_pred HHHhcCCcEEEEEccccc
Q 038902 234 RLRERTKKVLIILDDVRE 251 (997)
Q Consensus 234 ~l~~~~k~~LlvlDdv~~ 251 (997)
.++. +.--+||+|-|-.
T Consensus 1504 ~~~s-~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARS-GAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHH-TCCSEEEESCSTT
T ss_pred HHHc-CCCCEEEEccHHh
Confidence 4454 6777999998743
No 488
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.78 E-value=0.16 Score=54.48 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.78 E-value=0.17 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...++++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999754
No 490
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.56 E-value=0.68 Score=52.88 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHHHHHHHHHH-HhCCC
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLRRIQDKIAE-LLKFK 218 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~~~~~~i~~-~l~~~ 218 (997)
.-.++.|.|.+|+||||+|..++...........+|++.. .+..++...++. ..+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E--~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE--ESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS--SCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc--CCHHHHHHHHHHHHcCCC
Confidence 3468999999999999999999988765322233666553 456777776654 34443
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.52 E-value=0.19 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 492
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.51 E-value=0.16 Score=56.37 Aligned_cols=28 Identities=43% Similarity=0.527 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQIDT 187 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 187 (997)
+.++|+|+|++|+||||++..++.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988764
No 493
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.47 E-value=0.27 Score=52.99 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccCCCHH--HHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAESSDLR--RIQDKIAELLKFKIEEEDELQRRATLAKRLR 236 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 236 (997)
..-.+++|+|+.|+||||+.+.+....... .....+.+.+..... .. ..+..+.... .........+...|.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~~~---~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQREVH---RDTLGFSEALRSALR 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBT---TTBSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeeeec---cccCCHHHHHHHHhh
Confidence 334599999999999999999998876542 112122222221100 00 0000000000 001123336667777
Q ss_pred hcCCcEEEEEccccccccccccccccCCCCCceEEEEeeCChhh
Q 038902 237 ERTKKVLIILDDVREKINLAVSGIPYGEERKRCKVIVTSRRLDV 280 (997)
Q Consensus 237 ~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 280 (997)
. .+=+|++|+..+.+.++.+.... ..|--|++||...+.
T Consensus 195 ~--~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 E--DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp S--CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred h--CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 6 78888999998765554432221 235558888876533
No 494
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.46 E-value=0.18 Score=54.32 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998654
No 495
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.42 E-value=0.4 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 159 DKVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 159 ~~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
++.++|+|+|.+|+|||||...+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 35678999999999999999999854
No 496
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.41 E-value=0.18 Score=54.30 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 497
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.41 E-value=0.18 Score=54.52 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 498
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.37 E-value=0.24 Score=51.31 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhhCCCceEEEEEccC
Q 038902 162 NIIGLQGPGGIGKSTLMEQLAKQIDTIAPHDKAHVIVAES 201 (997)
Q Consensus 162 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~wv~v~~~ 201 (997)
++|+|.|.||+||||+|..++..+... .....-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-CCcEEEEcCCCC
Confidence 578889999999999999999988753 333466776544
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.33 E-value=0.15 Score=56.54 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 038902 160 KVNIIGLQGPGGIGKSTLMEQLAKQI 185 (997)
Q Consensus 160 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 185 (997)
...+|.|+|+.|+||||+|+.++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998754
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.22 E-value=0.21 Score=49.24 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHH
Q 038902 149 LNSIMKLLKDDKVNIIGLQGPGGIGKSTLMEQLAKQ 184 (997)
Q Consensus 149 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~~~~~ 184 (997)
.+.+.++....+.-.|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 334433333344567899999999999999998864
Done!