BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038906
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
           Burkholderia Xenovorans Lb400
 pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
           Burkholderia Xenovorans Lb400
          Length = 529

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 152 LMWTLNLYTRPKLTRSQFAVILPLA---VADTLGNLLTNISLGTVNVSFTHTIKAMEPFF 208
           L WT  LY +P L  ++  V+   A    A  LGN LT      ++V  T  + A  P  
Sbjct: 208 LYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTF----PLSVGATAILMAERPTA 263

Query: 209 TVLFAALFLREKPTIWL-VPSL 229
             +FA L +  +PT++  VP+L
Sbjct: 264 DAIFARL-VEHRPTVFYGVPTL 284


>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12
 pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12
 pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12
 pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12
          Length = 343

 Score = 27.7 bits (60), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 158 LYTRPKLTRSQFAVILPLAVADTLGNLL----TNISLGTVNVSFTHTIKAMEPFFTVL 211
           LY  P LT       L   +AD+  N++    T  S+  +  S  HT+K   P FTVL
Sbjct: 162 LYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLR-SMIHTVKGAHPHFTVL 218


>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12 In Complex With Pyruvate
 pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12 In Complex With Pyruvate
 pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12 In Complex With Pyruvate
 pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
           The Dihydrodipicolinic Acid Synthase Family From E. Coli
           K12 In Complex With Pyruvate
          Length = 298

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 158 LYTRPKLTRSQFAVILPLAVADTLGNLL----TNISLGTVNVSFTHTIKAMEPFFTVL 211
           LY  P LT       L   +AD+  N++    T  S+  +  S  HT+K   P FTVL
Sbjct: 133 LYNFPALTGQDLTPALVKTLADSRSNIIGIXDTIDSVAHLR-SMIHTVKGAHPHFTVL 189


>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
           K12 In Complex With Kdgal
 pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
           K12 In Complex With Kdgal
 pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
           K12 In Complex With Kdgal
 pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
           K12 In Complex With Kdgal
          Length = 298

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 158 LYTRPKLTRSQFAVILPLAVADTLGNLL----TNISLGTVNVSFTHTIKAMEPFFTVL 211
           LY  P LT       L   +AD+  N++    T  S+  +  S  HT+K   P FTVL
Sbjct: 133 LYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLR-SMIHTVKGAHPHFTVL 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,456,874
Number of Sequences: 62578
Number of extensions: 283348
Number of successful extensions: 493
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 14
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)