Query 038906
Match_columns 276
No_of_seqs 187 out of 1370
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 1.6E-29 3.5E-34 238.9 20.6 173 103-275 46-220 (350)
2 KOG1441 Glucose-6-phosphate/ph 100.0 2.1E-30 4.6E-35 241.0 8.9 174 102-275 13-189 (316)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 6.9E-27 1.5E-31 215.4 20.9 169 105-273 1-169 (302)
4 KOG1443 Predicted integral mem 99.9 3.1E-22 6.7E-27 182.9 13.2 181 96-276 6-191 (349)
5 KOG1444 Nucleotide-sugar trans 99.8 1.8E-18 3.9E-23 159.4 18.0 172 105-276 11-184 (314)
6 PF08449 UAA: UAA transporter 99.7 1.2E-15 2.6E-20 141.3 16.5 160 114-275 8-180 (303)
7 KOG1442 GDP-fucose transporter 99.6 1.4E-15 3E-20 137.8 5.8 175 99-273 21-209 (347)
8 TIGR00950 2A78 Carboxylate/Ami 99.6 2.6E-13 5.7E-18 121.4 17.8 148 121-274 4-153 (260)
9 PRK11272 putative DMT superfam 99.5 9.7E-13 2.1E-17 121.1 21.3 149 121-273 23-174 (292)
10 PRK11689 aromatic amino acid e 99.5 5.8E-13 1.3E-17 122.8 18.5 158 107-274 9-181 (295)
11 PLN00411 nodulin MtN21 family 99.5 1.4E-12 3E-17 124.2 19.6 158 116-274 23-214 (358)
12 TIGR00688 rarD rarD protein. T 99.5 3.2E-12 6.9E-17 115.1 18.7 158 106-273 6-170 (256)
13 PRK11453 O-acetylserine/cystei 99.5 5.3E-12 1.2E-16 116.6 19.5 155 106-273 8-167 (299)
14 PRK15430 putative chlorampheni 99.4 7.8E-12 1.7E-16 115.4 19.2 162 103-274 9-174 (296)
15 PF06027 DUF914: Eukaryotic pr 99.4 1.5E-11 3.4E-16 115.9 19.2 158 118-275 25-194 (334)
16 PRK10532 threonine and homoser 99.3 7.3E-11 1.6E-15 108.8 17.9 143 123-275 29-174 (293)
17 PF00892 EamA: EamA-like trans 99.3 3.9E-11 8.3E-16 94.6 11.9 118 121-240 6-125 (126)
18 TIGR03340 phn_DUF6 phosphonate 99.2 6.2E-10 1.4E-14 101.8 18.3 149 121-272 16-167 (281)
19 COG0697 RhaT Permeases of the 99.2 3.9E-09 8.5E-14 94.5 20.3 150 123-272 24-177 (292)
20 PF04142 Nuc_sug_transp: Nucle 99.1 5.2E-10 1.1E-14 101.4 12.3 111 166-276 14-141 (244)
21 COG5070 VRG4 Nucleotide-sugar 99.1 3.9E-10 8.6E-15 100.1 9.0 158 111-272 11-178 (309)
22 KOG1580 UDP-galactose transpor 99.0 3.9E-10 8.4E-15 100.9 5.4 154 116-271 23-194 (337)
23 KOG1581 UDP-galactose transpor 99.0 2.9E-08 6.4E-13 91.6 16.9 173 100-274 8-197 (327)
24 COG2510 Predicted membrane pro 99.0 1.6E-08 3.4E-13 82.7 12.4 119 121-240 18-138 (140)
25 KOG1582 UDP-galactose transpor 99.0 3E-09 6.4E-14 96.9 9.0 170 102-274 39-215 (367)
26 KOG2765 Predicted membrane pro 98.9 1.2E-08 2.6E-13 96.4 10.2 107 169-275 159-273 (416)
27 PF13536 EmrE: Multidrug resis 98.8 2.9E-08 6.4E-13 79.1 9.4 76 168-244 33-109 (113)
28 TIGR00776 RhaT RhaT L-rhamnose 98.7 6.5E-07 1.4E-11 82.8 16.4 156 107-272 6-175 (290)
29 TIGR00950 2A78 Carboxylate/Ami 98.7 1.2E-06 2.7E-11 78.2 16.7 116 121-237 143-260 (260)
30 COG5006 rhtA Threonine/homoser 98.6 2.4E-06 5.3E-11 77.4 16.6 141 123-273 29-172 (292)
31 KOG3912 Predicted integral mem 98.6 1.8E-06 4E-11 79.3 14.6 160 115-274 12-201 (372)
32 PRK10532 threonine and homoser 98.5 5.2E-06 1.1E-10 76.5 16.2 118 121-241 163-281 (293)
33 PLN00411 nodulin MtN21 family 98.5 5.8E-06 1.3E-10 79.0 16.5 120 121-241 204-328 (358)
34 KOG2234 Predicted UDP-galactos 98.5 1.2E-05 2.5E-10 76.0 17.6 110 166-275 89-209 (345)
35 PRK11689 aromatic amino acid e 98.4 9.2E-06 2E-10 75.0 14.9 117 121-241 171-287 (295)
36 PRK11272 putative DMT superfam 98.4 1.2E-05 2.6E-10 74.0 15.3 119 123-243 167-287 (292)
37 PRK11453 O-acetylserine/cystei 98.2 9.7E-05 2.1E-09 68.2 17.7 122 121-242 158-288 (299)
38 PRK15051 4-amino-4-deoxy-L-ara 98.2 3.7E-05 8E-10 61.6 12.8 63 178-240 46-108 (111)
39 TIGR03340 phn_DUF6 phosphonate 98.2 1.8E-05 4E-10 72.3 11.5 68 171-238 212-280 (281)
40 KOG1583 UDP-N-acetylglucosamin 98.2 1.1E-06 2.4E-11 80.5 3.2 146 124-273 21-188 (330)
41 KOG4510 Permease of the drug/m 98.1 2.1E-06 4.6E-11 78.4 4.3 155 115-274 47-216 (346)
42 TIGR00817 tpt Tpt phosphate/ph 98.1 3.6E-05 7.8E-10 71.0 12.0 120 121-241 160-293 (302)
43 COG2962 RarD Predicted permeas 98.1 0.00022 4.8E-09 65.8 16.0 153 114-273 16-172 (293)
44 KOG4314 Predicted carbohydrate 98.0 2.9E-06 6.2E-11 74.6 2.3 108 168-275 52-161 (290)
45 PRK15430 putative chlorampheni 97.9 0.00032 6.9E-09 64.8 14.8 69 172-240 216-284 (296)
46 PF03151 TPT: Triose-phosphate 97.9 0.00064 1.4E-08 55.9 15.0 125 116-240 10-152 (153)
47 COG0697 RhaT Permeases of the 97.9 0.001 2.2E-08 59.4 16.1 118 121-242 169-288 (292)
48 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00061 1.3E-08 63.0 13.7 130 102-241 151-288 (290)
49 PTZ00343 triose or hexose phos 97.6 0.0021 4.5E-08 61.1 14.8 121 120-240 208-347 (350)
50 PRK02971 4-amino-4-deoxy-L-ara 97.5 0.00063 1.4E-08 56.0 8.3 71 172-242 50-123 (129)
51 PRK10452 multidrug efflux syst 97.3 0.0035 7.6E-08 51.1 10.5 70 172-241 33-103 (120)
52 PF06800 Sugar_transport: Suga 97.2 0.0085 1.8E-07 55.2 13.0 112 160-271 34-160 (269)
53 PRK09541 emrE multidrug efflux 97.2 0.0058 1.3E-07 49.0 10.5 68 174-241 35-103 (110)
54 PRK11431 multidrug efflux syst 97.0 0.011 2.3E-07 47.1 10.7 69 172-240 32-101 (105)
55 PRK10650 multidrug efflux syst 97.0 0.018 3.8E-07 46.2 11.6 68 172-239 38-106 (109)
56 PF08449 UAA: UAA transporter 97.0 0.018 3.9E-07 53.3 13.3 132 110-241 158-297 (303)
57 PF06027 DUF914: Eukaryotic pr 96.9 0.053 1.1E-06 51.6 15.6 140 98-242 164-306 (334)
58 TIGR00803 nst UDP-galactose tr 96.7 0.0034 7.3E-08 55.4 6.0 84 193-276 2-112 (222)
59 KOG2766 Predicted membrane pro 96.7 5.1E-05 1.1E-09 69.1 -6.0 156 116-275 28-192 (336)
60 COG5006 rhtA Threonine/homoser 96.6 0.065 1.4E-06 49.1 13.6 113 123-238 165-279 (292)
61 COG2076 EmrE Membrane transpor 96.5 0.013 2.9E-07 46.7 7.5 69 172-240 33-102 (106)
62 PF00893 Multi_Drug_Res: Small 96.3 0.032 6.9E-07 43.1 8.5 55 178-232 38-93 (93)
63 COG2962 RarD Predicted permeas 96.3 0.24 5.1E-06 46.1 15.2 128 112-241 153-283 (293)
64 PF06800 Sugar_transport: Suga 95.9 0.25 5.4E-06 45.7 13.5 72 165-237 192-267 (269)
65 TIGR00803 nst UDP-galactose tr 95.8 0.081 1.8E-06 46.6 9.8 67 172-238 155-221 (222)
66 PF10639 UPF0546: Uncharacteri 95.7 0.019 4.1E-07 46.4 4.9 71 169-240 42-113 (113)
67 PF05653 Mg_trans_NIPA: Magnes 95.6 0.021 4.5E-07 53.4 5.5 68 173-240 53-121 (300)
68 PF04657 DUF606: Protein of un 93.8 2.8 6E-05 34.7 13.2 115 123-238 18-138 (138)
69 KOG1581 UDP-galactose transpor 93.5 0.94 2E-05 42.6 10.8 126 108-238 174-310 (327)
70 PRK13499 rhamnose-proton sympo 93.3 3 6.6E-05 39.9 14.2 102 165-266 69-191 (345)
71 KOG4510 Permease of the drug/m 92.9 0.15 3.3E-06 47.2 4.6 75 165-239 249-323 (346)
72 TIGR00688 rarD rarD protein. T 92.7 3.5 7.6E-05 36.8 13.2 50 167-216 206-255 (256)
73 PRK13499 rhamnose-proton sympo 91.5 9.7 0.00021 36.5 15.2 69 173-242 264-342 (345)
74 KOG1441 Glucose-6-phosphate/ph 89.3 1.6 3.6E-05 41.2 7.8 126 113-240 170-306 (316)
75 KOG2922 Uncharacterized conser 89.1 0.22 4.7E-06 47.0 1.8 69 173-241 67-136 (335)
76 PF04142 Nuc_sug_transp: Nucle 87.2 20 0.00044 32.3 13.4 115 116-230 124-242 (244)
77 KOG1580 UDP-galactose transpor 84.4 3.5 7.6E-05 37.8 6.7 71 168-238 240-310 (337)
78 PF04342 DUF486: Protein of un 82.8 16 0.00034 29.2 9.0 95 145-239 9-106 (108)
79 COG3238 Uncharacterized protei 80.3 35 0.00076 28.9 12.7 114 122-239 21-144 (150)
80 COG3169 Uncharacterized protei 75.8 38 0.00082 26.9 10.2 30 210-239 84-113 (116)
81 COG4975 GlcU Putative glucose 70.9 3.6 7.8E-05 37.8 2.7 62 167-228 207-268 (288)
82 KOG2234 Predicted UDP-galactos 70.4 1E+02 0.0023 29.6 14.5 123 118-240 195-321 (345)
83 COG5070 VRG4 Nucleotide-sugar 69.3 62 0.0013 29.7 10.1 121 116-237 165-292 (309)
84 PF06379 RhaT: L-rhamnose-prot 64.9 1.1E+02 0.0024 29.5 11.4 103 166-268 70-192 (344)
85 KOG4831 Unnamed protein [Funct 62.3 13 0.00029 29.8 4.0 70 170-240 54-124 (125)
86 KOG1444 Nucleotide-sugar trans 61.9 90 0.002 29.6 10.2 71 171-241 229-300 (314)
87 PF08627 CRT-like: CRT-like; 58.7 31 0.00068 28.4 5.7 39 103-141 54-93 (130)
88 COG4975 GlcU Putative glucose 51.7 11 0.00024 34.8 2.3 84 160-243 50-138 (288)
89 KOG2765 Predicted membrane pro 45.7 3.1E+02 0.0066 27.0 12.1 55 188-242 337-391 (416)
90 KOG1582 UDP-galactose transpor 34.1 2.1E+02 0.0044 27.1 7.6 48 196-243 287-334 (367)
91 COG3296 Uncharacterized protei 32.8 2.9E+02 0.0063 23.0 9.4 64 194-257 41-105 (143)
92 PTZ00358 hypothetical protein; 32.2 4.7E+02 0.01 25.3 11.5 104 105-210 6-112 (367)
93 COG2510 Predicted membrane pro 24.0 3E+02 0.0065 23.0 6.2 46 174-219 10-55 (140)
94 TIGR02230 ATPase_gene1 F0F1-AT 23.3 1.1E+02 0.0024 24.1 3.5 37 205-241 54-90 (100)
95 PF07123 PsbW: Photosystem II 23.3 94 0.002 26.0 3.1 33 244-276 101-133 (138)
96 COG1575 MenA 1,4-dihydroxy-2-n 22.2 1.8E+02 0.0039 27.5 5.2 48 226-273 21-68 (303)
97 PF06570 DUF1129: Protein of u 20.6 5.6E+02 0.012 22.2 10.3 55 218-272 141-202 (206)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=1.6e-29 Score=238.91 Aligned_cols=173 Identities=36% Similarity=0.616 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--hHHHHHHHHHHHHHH
Q 038906 103 QTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLT--RSQFAVILPLAVADT 180 (276)
Q Consensus 103 ~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s--~~~~~~~lplgl~~~ 180 (276)
..+++..+|++||.+|+.++++||++++.+|||++++.+|++++++++.+.|..+.+++++.. +++++.++|+|+++.
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999999998877777766655556553 468899999999999
Q ss_pred HHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHH
Q 038906 181 LGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASNVT 260 (276)
Q Consensus 181 ~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~ 260 (276)
..+...|.|+++++++++|++|+++|+|+++++++++|||++++++++++++++||++++.+|.++++.|++++++|+++
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 205 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG 205 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccC
Q 038906 261 NQSRNVFSKKFMVRK 275 (276)
Q Consensus 261 ~al~~V~~Kkll~~k 275 (276)
+++|+++.||+++++
T Consensus 206 ~a~~~i~~k~~~~~~ 220 (350)
T PTZ00343 206 SSLRSIFAKKTMKNK 220 (350)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999765
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-30 Score=241.01 Aligned_cols=174 Identities=40% Similarity=0.636 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-ChHHHHHHHHHHHH
Q 038906 102 IQTLQLGGMFGLWYLLNIYFNIFNKQVLK--VFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKL-TRSQFAVILPLAVA 178 (276)
Q Consensus 102 ~~~l~~~~~~~~w~~~s~~~~i~nK~iL~--~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~-s~~~~~~~lplgl~ 178 (276)
++......++..||++|+.++++||++++ +|+||+++|.+|+.++.+...+.+.++..+.++. ++.+++.++|+|++
T Consensus 13 ~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~ 92 (316)
T KOG1441|consen 13 KKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLV 92 (316)
T ss_pred chhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Confidence 47788999999999999999999999999 8999999999999999998888888888776665 45789999999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 038906 179 DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASN 258 (276)
Q Consensus 179 ~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~ 258 (276)
++++++++|.|+.|+||||+|++|+++|++++++++++.+|++++.+++++++++.||.+++.+|.+||+.|++.+++++
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~ 172 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISN 172 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccC
Q 038906 259 VTNQSRNVFSKKFMVRK 275 (276)
Q Consensus 259 i~~al~~V~~Kkll~~k 275 (276)
+.+++|+|++|+++++|
T Consensus 173 ~~~al~~I~~~~ll~~~ 189 (316)
T KOG1441|consen 173 LAFALRNILSKKLLTSK 189 (316)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999999999754
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.95 E-value=6.9e-27 Score=215.44 Aligned_cols=169 Identities=54% Similarity=0.892 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 038906 105 LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNL 184 (276)
Q Consensus 105 l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~ 184 (276)
+++++++++||..|+.++++||+++++|++|+++++.|+.++.+++.+.|..+..++++.++++++.++++|++++.++.
T Consensus 1 ~~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 1 LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999987776665544455667789999999999999999999
Q ss_pred HHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH
Q 038906 185 LTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASNVTNQSR 264 (276)
Q Consensus 185 l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~~al~ 264 (276)
++|++++|+++++++++|+++|+|+++++++++|||++++++++++++++|+.+.+.++.+++..|+++++++++++++|
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777788899999999999999999
Q ss_pred HHHHHhhcc
Q 038906 265 NVFSKKFMV 273 (276)
Q Consensus 265 ~V~~Kkll~ 273 (276)
+++.||.++
T Consensus 161 ~v~~k~~~~ 169 (302)
T TIGR00817 161 NIFSKKAMT 169 (302)
T ss_pred HHHHHHhhc
Confidence 999999887
No 4
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.88 E-value=3.1e-22 Score=182.90 Aligned_cols=181 Identities=24% Similarity=0.303 Sum_probs=161.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCCh-HHHH
Q 038906 96 PEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYT----RPKLTR-SQFA 170 (276)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~----~~~~s~-~~~~ 170 (276)
-+...+.+...+.+++.+||.+|++..+++|+.-.+|+||++++.+|+++-.++..........+ +.+.+| ++.+
T Consensus 6 ~~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr 85 (349)
T KOG1443|consen 6 LDNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLR 85 (349)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHH
Confidence 34678888999999999999999999999999999999999999999998777654433221111 223454 5678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHH
Q 038906 171 VILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTG 250 (276)
Q Consensus 171 ~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G 250 (276)
.++|.|++.++.++++|+|++|+++++|+|.|+.+++|+.+++.+|.-|++++.-.+..+++.+|+.+.++++.+||..|
T Consensus 86 ~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~G 165 (349)
T KOG1443|consen 86 RLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEG 165 (349)
T ss_pred HhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCC
Q 038906 251 FCSAMASNVTNQSRNVFSKKFMVRKE 276 (276)
Q Consensus 251 ~l~alls~i~~al~~V~~Kkll~~k~ 276 (276)
+.+++++.++.++|+.+.|+++++.+
T Consensus 166 f~lv~~aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 166 FFLVLAASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence 99999999999999999999998753
No 5
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.8e-18 Score=159.43 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHH--HHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHH
Q 038906 105 LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTA--FQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLG 182 (276)
Q Consensus 105 l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~--~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~ 182 (276)
.......+.|..+|+.+.+.||+++++++||..++. .|.+++.+.+.+....+..+.++++++..|+++|+++++.++
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH
Confidence 344456677778899999999999999999998888 899999988888778888888899999999999999999999
Q ss_pred HHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH
Q 038906 183 NLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASNVTNQ 262 (276)
Q Consensus 183 ~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~~a 262 (276)
..++..+++|++++.+.++|..+|+++++.+..++|.+++...|.+++.+.+|......+|.++|..|+.+++.+.++.+
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a 170 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA 170 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCC
Q 038906 263 SRNVFSKKFMVRKE 276 (276)
Q Consensus 263 l~~V~~Kkll~~k~ 276 (276)
.+.++.||..+.++
T Consensus 171 ~~~v~~kk~vd~~~ 184 (314)
T KOG1444|consen 171 AFVVYVKKSVDSAN 184 (314)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999887653
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.68 E-value=1.2e-15 Score=141.33 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHhhc--C-CchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 038906 114 WYLLNIYFNIFNKQVLKV--F-PYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISL 190 (276)
Q Consensus 114 w~~~s~~~~i~nK~iL~~--f-~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al 190 (276)
.|..-....++++++.+. . ++|++++++|+++..++..+..... +.++.++..++..+++++++.++..++|.|+
T Consensus 8 i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 8 IFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF--KFPKSRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--cccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334334455777777763 2 3799999999999887665433222 2233456678889999999999999999999
Q ss_pred hccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc----ccc------HHHHHHHHHHHHH
Q 038906 191 GTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA----SFN------WTGFCSAMASNVT 260 (276)
Q Consensus 191 ~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~----~f~------~~G~l~alls~i~ 260 (276)
+|+|+++++++|++.|+++++++++++|||+++++|++++++++|+++...+|. ..+ ..|+++.+++.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~ 165 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLL 165 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886542 111 2399999999999
Q ss_pred HHHHHHHHHhhcccC
Q 038906 261 NQSRNVFSKKFMVRK 275 (276)
Q Consensus 261 ~al~~V~~Kkll~~k 275 (276)
++.+++++||++++.
T Consensus 166 ~a~~~~~qe~~~~~~ 180 (303)
T PF08449_consen 166 DAFTGVYQEKLFKKY 180 (303)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998653
No 7
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.4e-15 Score=137.80 Aligned_cols=175 Identities=21% Similarity=0.331 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHHHHHH-HHhhh----cCCC--CCChH
Q 038906 99 SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV----FPYPTTVTAFQFGCGSVMIILM-WTLNL----YTRP--KLTRS 167 (276)
Q Consensus 99 ~~~~~~l~~~~~~~~w~~~s~~~~i~nK~iL~~----f~~P~~Lt~~q~~v~~l~l~l~-~~~~~----~~~~--~~s~~ 167 (276)
.-..+..++...+..++.+++.+.+.||++++. .+.|.+++..|+++...++... +.... +..| +++-+
T Consensus 21 ~l~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~ 100 (347)
T KOG1442|consen 21 VLEANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLA 100 (347)
T ss_pred HHHHhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHH
Confidence 344557777778888899999999999999984 6789999999999988766543 33211 2222 35567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc---c
Q 038906 168 QFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE---A 244 (276)
Q Consensus 168 ~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e---~ 244 (276)
..+.++|+++.+.+++.++|++++|++|+|+++-++++.+|+++++++++|+|-+.....+.+++++|-.+-+..| .
T Consensus 101 t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~ 180 (347)
T KOG1442|consen 101 TARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTG 180 (347)
T ss_pred HHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999988888776 4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038906 245 SFNWTGFCSAMASNVTNQSRNVFSKKFMV 273 (276)
Q Consensus 245 ~f~~~G~l~alls~i~~al~~V~~Kkll~ 273 (276)
.+++.|.++++.|.++-++..|+.||.+.
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~ 209 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLP 209 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecc
Confidence 57899999999999999999999998764
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.56 E-value=2.6e-13 Score=121.39 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=122.5
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFTH 199 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~~ 199 (276)
..+..|+.++....|..+++.|++++.+++.+....+ .++++++..+..+.+ +.++..+.+.|++|++++.+.
T Consensus 4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 3467899988755488888889888877655433221 235566666777765 678889999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc-cccccHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038906 200 TIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT-EASFNWTGFCSAMASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 200 ~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~-e~~f~~~G~l~alls~i~~al~~V~~Kkll~~ 274 (276)
++.++.|+++++++.+++|||++++++.++++.+.|+.+.... +.+.+..|++++++++++++.++++.||..++
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~ 153 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK 153 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 9999999999999999999999999999999999999987644 34556889999999999999999999998754
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.55 E-value=9.7e-13 Score=121.11 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=122.6
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHH-HHHHHHHHHHH-hccchhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVAD-TLGNLLTNISL-GTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~-~~~~~l~n~al-~~vsvs~~ 198 (276)
..+..|..+++.+ |..++++|++++.++++.....+ ++...++++++....+|++. ..++.+.+.+. ++++++.+
T Consensus 23 ~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a 99 (292)
T PRK11272 23 TYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLR--GHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIA 99 (292)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 4578899998888 99999999999887654432222 22223567788888888874 56677888888 99999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc-cccccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT-EASFNWTGFCSAMASNVTNQSRNVFSKKFMV 273 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~-e~~f~~~G~l~alls~i~~al~~V~~Kkll~ 273 (276)
.++-++.|+++.+++.+ +|||+++++++++++.++|+.+...+ +.+.+..|.+++++++++|+.++++.||..+
T Consensus 100 ~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~ 174 (292)
T PRK11272 100 AVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPL 174 (292)
T ss_pred HHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999986 69999999999999999999988643 3456678999999999999999999999754
No 10
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.53 E-value=5.8e-13 Score=122.83 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 038906 107 LGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLT 186 (276)
Q Consensus 107 ~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~ 186 (276)
....+.+|.. .....|..++.+| |..+.++|+.++.+++.... ++++..+++++..+.-++.+...+.+.
T Consensus 9 ~l~a~~~Wg~----~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (295)
T PRK11689 9 GLIAILLWST----MVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV-----GFPRLRQFPKRYLLAGGLLFVSYEICL 78 (295)
T ss_pred HHHHHHHHHH----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc-----cccccccccHHHHHHHhHHHHHHHHHH
Confidence 4445555554 3477899999998 99999999999887654321 112222222333333333455566666
Q ss_pred HHHHh----ccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc-----------cccHHHH
Q 038906 187 NISLG----TVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA-----------SFNWTGF 251 (276)
Q Consensus 187 n~al~----~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~-----------~f~~~G~ 251 (276)
+.+++ +.+++.+.++.++.|+++++++.+++|||+++++++++++..+|+.+....+. ..+..|.
T Consensus 79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~ 158 (295)
T PRK11689 79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSY 158 (295)
T ss_pred HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHH
Confidence 66665 45777788999999999999999999999999999999999999998875432 1235699
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 038906 252 CSAMASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 252 l~alls~i~~al~~V~~Kkll~~ 274 (276)
+++++++++|+.++++.||..++
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~~ 181 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYARG 181 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999998654
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.51 E-value=1.4e-12 Score=124.23 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHHHH-hhh-cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038906 116 LLNIYFNIFNKQVLKV-FPYPTTVTAFQFGCGSVMIILMWT-LNL-YTRPKLTRSQFAVILPLAVADTLGNLLTNISLGT 192 (276)
Q Consensus 116 ~~s~~~~i~nK~iL~~-f~~P~~Lt~~q~~v~~l~l~l~~~-~~~-~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~ 192 (276)
..+.++.++.|..++. .+ |..+.++|++++++++..... .+. .+.++.+++++..+..+|++......+.+.+++|
T Consensus 23 ~~~~~~~~~~k~a~~~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~ 101 (358)
T PLN00411 23 TSVVGISTLFKVATSKGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEY 101 (358)
T ss_pred HHHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455577888999885 45 888999999998876654322 221 2224445777788888888875566789999999
Q ss_pred cchhhhhhhccchHHHHHHHHHHH------hcccCChhhHHHHHHHHHhhhhhccc-cc---------------------
Q 038906 193 VNVSFTHTIKAMEPFFTVLFAALF------LREKPTIWLVPSLVPIVGGVALASLT-EA--------------------- 244 (276)
Q Consensus 193 vsvs~~~~ika~~Pvftvils~l~------l~er~s~~~~lsl~liv~GV~La~~~-e~--------------------- 244 (276)
++++.+.++-++.|+|+++++.++ ++||+++.+++++++.++|+.+.... +.
T Consensus 102 tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~ 181 (358)
T PLN00411 102 SNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLS 181 (358)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccC
Confidence 999999999999999999999999 69999999999999999999986531 11
Q ss_pred --ccc-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038906 245 --SFN-WTGFCSAMASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 245 --~f~-~~G~l~alls~i~~al~~V~~Kkll~~ 274 (276)
..+ ..|.+++++++++|+++++++|+..++
T Consensus 182 ~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~ 214 (358)
T PLN00411 182 SSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE 214 (358)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 459999999999999999999988654
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.48 E-value=3.2e-12 Score=115.10 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH-HhhhcC----C-CCCChHH-HHHHHHHHHH
Q 038906 106 QLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMW-TLNLYT----R-PKLTRSQ-FAVILPLAVA 178 (276)
Q Consensus 106 ~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~-~~~~~~----~-~~~s~~~-~~~~lplgl~ 178 (276)
.....+.+|... .+..|. +.+++ |..++++|++++.+++.+.. ..+.++ + .+..+++ +......|++
T Consensus 6 ~~i~a~~~wg~~----~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 6 VSLLASFLFGYM----YYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred HHHHHHHHHHHH----HHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344455555553 356787 55687 99999999999887654322 222111 0 0112222 3345666777
Q ss_pred HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 038906 179 DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASN 258 (276)
Q Consensus 179 ~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~ 258 (276)
...+..+.++++++++++.+.++.++.|+|+++++.+++|||+++++++++++.+.|+.+....+.+.+ .++++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa 155 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLA 155 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999998754322222 3578899
Q ss_pred HHHHHHHHHHHhhcc
Q 038906 259 VTNQSRNVFSKKFMV 273 (276)
Q Consensus 259 i~~al~~V~~Kkll~ 273 (276)
++++.|.+..|+..+
T Consensus 156 ~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 156 FSFTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999998754
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.47 E-value=5.3e-12 Score=116.56 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHH-HHHH
Q 038906 106 QLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADT-LGNL 184 (276)
Q Consensus 106 ~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~-~~~~ 184 (276)
.......+|... ....|..+++++ |..++++|+.++.+.+.... . +++.. ++..+..+++.. ....
T Consensus 8 ~~l~~~~~Wg~~----~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~--~---~~~~~---~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 8 LALLVVVVWGLN----FVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFV--A---RPKVP---LNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHhhh----HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHh--c---CCCCc---hHHHHHHHHHHHHHHHH
Confidence 344445555543 356799998888 99999999998765443321 1 12222 233455566543 3345
Q ss_pred HHHHHHhc-cchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc---ccccHHHHHHHHHHHHH
Q 038906 185 LTNISLGT-VNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE---ASFNWTGFCSAMASNVT 260 (276)
Q Consensus 185 l~n~al~~-vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e---~~f~~~G~l~alls~i~ 260 (276)
+...+++| +|++.+.++-++.|+++.+++++++|||++.++++++++.++|+.+....+ .+.++.|++++++++++
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~ 154 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFS 154 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 66678887 699999999999999999999999999999999999999999999887532 23456899999999999
Q ss_pred HHHHHHHHHhhcc
Q 038906 261 NQSRNVFSKKFMV 273 (276)
Q Consensus 261 ~al~~V~~Kkll~ 273 (276)
|+.+++++||..+
T Consensus 155 ~a~~~v~~~~~~~ 167 (299)
T PRK11453 155 WACGNIFNKKIMS 167 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.45 E-value=7.8e-12 Score=115.38 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCChHHHHHHHHHHHH
Q 038906 103 QTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRP----KLTRSQFAVILPLAVA 178 (276)
Q Consensus 103 ~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~----~~s~~~~~~~lplgl~ 178 (276)
..+.......+|... .++.|.. .+++ |..++++|++++.+++...+..+..+.. ..+++.+...+.-++.
T Consensus 9 g~~~~l~a~~~wg~~----~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 9 GVLLALAAYFIWGIA----PAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 344444444555443 2445775 5677 9999999999988755443322110000 0123333222333344
Q ss_pred HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 038906 179 DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASN 258 (276)
Q Consensus 179 ~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~ 258 (276)
.+.++.+.+++++++|++.+.++.++.|+++++++++++|||+++++++++++.+.|+.+....+.+.. .++++++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa 158 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLA 158 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHH
Confidence 667899999999999999999999999999999999999999999999999999999998763222221 4577889
Q ss_pred HHHHHHHHHHHhhccc
Q 038906 259 VTNQSRNVFSKKFMVR 274 (276)
Q Consensus 259 i~~al~~V~~Kkll~~ 274 (276)
++|+.|+++.|+..++
T Consensus 159 ~~~a~~~i~~r~~~~~ 174 (296)
T PRK15430 159 FSFAFYGLVRKKIAVE 174 (296)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999997543
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.42 E-value=1.5e-11 Score=115.90 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038906 118 NIYFNIFNKQVLK-VFPYPTTVTAFQFGCGSVMIILMWTLNLYT--RPKLTRSQFAVILPLAVADTLGNLLTNISLGTVN 194 (276)
Q Consensus 118 s~~~~i~nK~iL~-~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~--~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vs 194 (276)
...++..+..+-+ +++.|.+-+++-.+.-.++.......+..+ ..+.-++++.+.+.+|++...++.+.+.|++|++
T Consensus 25 ~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs 104 (334)
T PF06027_consen 25 ITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTS 104 (334)
T ss_pred HHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344555555544 477788877665444222211111121111 1112345667777889999999999999999999
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc---------cccHHHHHHHHHHHHHHHHHH
Q 038906 195 VSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA---------SFNWTGFCSAMASNVTNQSRN 265 (276)
Q Consensus 195 vs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~---------~f~~~G~l~alls~i~~al~~ 265 (276)
++-++++..+.-+|+++++++++++|+++.+++++++.++|+.+....|. +-...|.+++++++++++++|
T Consensus 105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~n 184 (334)
T PF06027_consen 105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSN 184 (334)
T ss_pred HhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876542 124899999999999999999
Q ss_pred HHHHhhcccC
Q 038906 266 VFSKKFMVRK 275 (276)
Q Consensus 266 V~~Kkll~~k 275 (276)
++.|++.++.
T Consensus 185 V~~E~~v~~~ 194 (334)
T PF06027_consen 185 VLEEKLVKKA 194 (334)
T ss_pred HHHHHhcccC
Confidence 9999998765
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.34 E-value=7.3e-11 Score=108.78 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=112.8
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK 202 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik 202 (276)
...|+.+++++ |..+.++|++++.+++.+.... ++.+.++++++..+..|++......+.+++++|+|++.+.++.
T Consensus 29 ~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~ 104 (293)
T PRK10532 29 SLAKSLFPLVG-APGVTALRLALGTLILIAIFKP---WRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALE 104 (293)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 46899999998 9999999999998766543211 1223457788888888888877888889999999999999999
Q ss_pred cchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc--c-ccccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 038906 203 AMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT--E-ASFNWTGFCSAMASNVTNQSRNVFSKKFMVRK 275 (276)
Q Consensus 203 a~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~--e-~~f~~~G~l~alls~i~~al~~V~~Kkll~~k 275 (276)
.+.|+++++++. |++.. ...+.+.+.|+.+.... + .+.+..|.++++++.++|+.+.++.||..++.
T Consensus 105 ~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~ 174 (293)
T PRK10532 105 FTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEH 174 (293)
T ss_pred HHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999998873 66554 44566778998876532 2 23467899999999999999999999987653
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.30 E-value=3.9e-11 Score=94.60 Aligned_cols=118 Identities=25% Similarity=0.447 Sum_probs=99.1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH-HHhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILM-WTLNLYTRPKLTRSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~-~~~~~~~~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~ 198 (276)
..+++|...++++ |...+++|+.++.+ +.+. ...+..+..+.+++++...+.++++ ...+..+.+.++++++++.+
T Consensus 6 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 83 (126)
T PF00892_consen 6 YSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV 83 (126)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence 4578899999988 99999999999886 3332 2222222245567777888888887 58899999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.++..++|++++++++++++|++++.+++++++++.|+.+..
T Consensus 84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.24 E-value=6.2e-10 Score=101.82 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=108.5
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLN--LYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~--~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~ 198 (276)
.++.+|...++-+ +. +...+.++.+++......+ ..+.++.+++.+...+..++....++.+.+.++++.+++..
T Consensus 16 ~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (281)
T TIGR03340 16 WNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLV 92 (281)
T ss_pred HHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 4567787776632 43 2444444444333222221 11112223444444455555677888999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE-ASFNWTGFCSAMASNVTNQSRNVFSKKFM 272 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e-~~f~~~G~l~alls~i~~al~~V~~Kkll 272 (276)
..+.++.|+++++++.+++|||+++++++++++++.|+.+....+ ...+..|+.++++++++|+.|+++.|+..
T Consensus 93 ~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 93 YPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred hhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccc
Confidence 999999999999999999999999999999999999999876433 23456788899999999999999998764
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.19 E-value=3.9e-09 Score=94.46 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=108.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK 202 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik 202 (276)
...|........+....+.|+.++.++.......+.....+..+..++..+.-++....+..+.+.++++++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (292)
T COG0697 24 IALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLII 103 (292)
T ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 44455555422245555558887776532222111110111111122333444445677788999999999999999999
Q ss_pred cchHHHHHHHHH-HHhcccCChhhHHHHHHHHHhhhhhccccccc---cHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038906 203 AMEPFFTVLFAA-LFLREKPTIWLVPSLVPIVGGVALASLTEASF---NWTGFCSAMASNVTNQSRNVFSKKFM 272 (276)
Q Consensus 203 a~~Pvftvils~-l~l~er~s~~~~lsl~liv~GV~La~~~e~~f---~~~G~l~alls~i~~al~~V~~Kkll 272 (276)
++.|+++.+++. ++++||+++.++.+++....|+.+....+... +..|..+++++.++++.++++.|+..
T Consensus 104 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 104 GLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 77799999999999999999999998765443 36899999999999999999999876
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.14 E-value=5.2e-10 Score=101.37 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc-
Q 038906 166 RSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA- 244 (276)
Q Consensus 166 ~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~- 244 (276)
+++.......+++|++.+.+.+.++++++.+.+|+++.+..++|++++++++|+|.+..+|++++++++|+++...++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4566777888899999999999999999999999999999999999999999999999999999999999999864321
Q ss_pred --------c--------ccHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 038906 245 --------S--------FNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 276 (276)
Q Consensus 245 --------~--------f~~~G~l~alls~i~~al~~V~~Kkll~~k~ 276 (276)
. -.+.|+++++++.++.++..|+.+|++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1368999999999999999999999999874
No 21
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.09 E-value=3.9e-10 Score=100.12 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 038906 111 FGLWYLLNIYFNIFNKQVLKV--FPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNI 188 (276)
Q Consensus 111 ~~~w~~~s~~~~i~nK~iL~~--f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~ 188 (276)
++.|.+.|+.+++.||++++. |+.-..+.++|-+++.+-+.+....+..+. ...+.|.++|++++....+..+..
T Consensus 11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~f---R~t~aK~WfpiSfLLv~MIyt~SK 87 (309)
T COG5070 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEF---RLTKAKKWFPISFLLVVMIYTSSK 87 (309)
T ss_pred HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhe---ehhhhhhhcCHHHHHHHHHHhccc
Confidence 456678899999999999985 665667788898887766555554444332 244678889999999999999999
Q ss_pred HHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccccc--------ccHHHHHHHHHHHHH
Q 038906 189 SLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEAS--------FNWTGFCSAMASNVT 260 (276)
Q Consensus 189 al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~--------f~~~G~l~alls~i~ 260 (276)
+++|.+++.+++.|.++.+.++..+..++|.+.+-....+..++++.-..+.++|.+ +| .|+++....+++
T Consensus 88 sLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Ncls 166 (309)
T COG5070 88 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLS 166 (309)
T ss_pred ceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHh
Confidence 999999999999999999999999999999999999999999999999999888763 34 488888888999
Q ss_pred HHHHHHHHHhhc
Q 038906 261 NQSRNVFSKKFM 272 (276)
Q Consensus 261 ~al~~V~~Kkll 272 (276)
.+.+-...||..
T Consensus 167 saafVL~mrkri 178 (309)
T COG5070 167 SAAFVLIMRKRI 178 (309)
T ss_pred HHHHHHHHHHhh
Confidence 888887777653
No 22
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.9e-10 Score=100.91 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHhh-----------cCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 038906 116 LLNIYFNIFNKQVLK-----------VFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNL 184 (276)
Q Consensus 116 ~~s~~~~i~nK~iL~-----------~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~ 184 (276)
.+.+.+.+....+.+ .|.|...+.++|+.+..++.-+... .++..+.+...-+.....++-|.+.++
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~--ir~~~~~D~t~~~~YaAcs~sYLlAMV 100 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFL--IRKKTEIDNTPTKMYAACSASYLLAMV 100 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhhee--ecccccccCCcchHHHHHHHHHHHHHH
Confidence 333345566666654 3778899999999998887644332 234445555555667788888999999
Q ss_pred HHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc-------cccHHHHHHHHHH
Q 038906 185 LTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA-------SFNWTGFCSAMAS 257 (276)
Q Consensus 185 l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~-------~f~~~G~l~alls 257 (276)
.+|.|++|+|.+...+-|+..|+-+++++.++.+++++|++|+++++|++||++..++|. .....|-++.++|
T Consensus 101 ssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lS 180 (337)
T KOG1580|consen 101 SSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILS 180 (337)
T ss_pred hccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988642 2235788999999
Q ss_pred HHHHHHHHHHHHhh
Q 038906 258 NVTNQSRNVFSKKF 271 (276)
Q Consensus 258 ~i~~al~~V~~Kkl 271 (276)
.-..++....+.+.
T Consensus 181 L~mDGlTg~~Qdri 194 (337)
T KOG1580|consen 181 LAMDGLTGSIQDRI 194 (337)
T ss_pred HHhcccchhHHHHH
Confidence 88888888777664
No 23
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.9e-08 Score=91.57 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHH
Q 038906 100 AAIQTLQLGGMFGLWYLLNIYFNIFNKQVLK--------VFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAV 171 (276)
Q Consensus 100 ~~~~~l~~~~~~~~w~~~s~~~~i~nK~iL~--------~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~ 171 (276)
..++.+.+++.+.--|+.-....++...+.+ .|..|.++.++|-+++.++...+. +.++.+...++.+..
T Consensus 8 ~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l--~~~k~~~~~~apl~~ 85 (327)
T KOG1581|consen 8 MANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAML--KWWKKELSGVAPLYK 85 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHH--hcccccCCCCCchhH
Confidence 3456666666555555555556667766655 377899999999888877664332 233444444567888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc--------
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE-------- 243 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e-------- 243 (276)
...+++.+..+-.++..|++|++.+...+.|+..-+-+++...++.++|++..+|+..+++.+||.+....+
T Consensus 86 y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~ 165 (327)
T KOG1581|consen 86 YSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKS 165 (327)
T ss_pred HhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcccc
Confidence 889999999999999999999999999999999999999999999999999999999999999999976531
Q ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038906 244 -ASFNWTGFCSAMASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 244 -~~f~~~G~l~alls~i~~al~~V~~Kkll~~ 274 (276)
...+.+|+.+...+.+.+++.|..+++++++
T Consensus 166 g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~ 197 (327)
T KOG1581|consen 166 GRENSPIGILLLFGYLLFDGFTNATQDSLFKK 197 (327)
T ss_pred CCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc
Confidence 1246899999999999999999999998874
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.95 E-value=1.6e-08 Score=82.74 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=98.2
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH-HhhhcCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMW-TLNLYTRP-KLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~-~~~~~~~~-~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~ 198 (276)
..++.|..+++.+ |.+-|++|-.+...++.... ..+....+ .++.+.|.-+..-|+...++-.++.+|++...+|..
T Consensus 18 ~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~V 96 (140)
T COG2510 18 TPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRV 96 (140)
T ss_pred HHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 4588999999997 99999999888766554332 22322222 246677776777777788899999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.=+-.++|+++++++.+|+|||++.+++++++++++|+.+.+
T Consensus 97 vPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 97 VPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred EEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999998764
No 25
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.95 E-value=3e-09 Score=96.94 Aligned_cols=170 Identities=15% Similarity=0.093 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-CchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 038906 102 IQTLQLGGMFGLWYLLNIYFNIFNKQVLKV--F-PYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVA 178 (276)
Q Consensus 102 ~~~l~~~~~~~~w~~~s~~~~i~nK~iL~~--f-~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~ 178 (276)
++..++.+.+.-.++......+...++++. | ||-|.+|++|+++-..+.++-.. ... ++.....||....++.+
T Consensus 39 pkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~-~~~--~k~r~iP~rtY~~la~~ 115 (367)
T KOG1582|consen 39 PKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ-LIQ--TKRRVIPWRTYVILAFL 115 (367)
T ss_pred chhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE-eec--ccceecchhHhhhhHhh
Confidence 355677777777677777778899999884 6 58899999999885544332111 011 11123457888999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc----ccccHHHHHHH
Q 038906 179 DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE----ASFNWTGFCSA 254 (276)
Q Consensus 179 ~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e----~~f~~~G~l~a 254 (276)
....+.++|-|+.|.+.+...+.|.+.-+-+++.+.++.|+|+++..+.+..++++|.++....| .+||..|+.+.
T Consensus 116 t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mI 195 (367)
T KOG1582|consen 116 TVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMI 195 (367)
T ss_pred hhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988655 56899999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 038906 255 MASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 255 lls~i~~al~~V~~Kkll~~ 274 (276)
-.+.++.|+-.-.++|.|+.
T Consensus 196 sgALl~DA~iGNvQEk~m~~ 215 (367)
T KOG1582|consen 196 SGALLADAVIGNVQEKAMKM 215 (367)
T ss_pred HHHHHHHHHhhHHHHHHHhh
Confidence 99999999988888887764
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.87 E-value=1.2e-08 Score=96.38 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc----
Q 038906 169 FAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA---- 244 (276)
Q Consensus 169 ~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~---- 244 (276)
.+..+....+....+.++|.|+.+.+|+-.+++-+++-+||.+++.++.+||+++.+.+++++.++||++.+.++.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3445555666778999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 038906 245 ----SFNWTGFCSAMASNVTNQSRNVFSKKFMVRK 275 (276)
Q Consensus 245 ----~f~~~G~l~alls~i~~al~~V~~Kkll~~k 275 (276)
+-...|.++++++++.|++|.++.||-..+|
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e 273 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE 273 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2248999999999999999999999988776
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.81 E-value=2.9e-08 Score=79.12 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc
Q 038906 168 QFAVILPLAVADT-LGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA 244 (276)
Q Consensus 168 ~~~~~lplgl~~~-~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~ 244 (276)
.+...+..|++.. .+..+.++|+++.| +.+..+.++.|+|+++++.+++|||++++++++++++++|+++...++.
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444556677654 78899999999999 6888999999999999999999999999999999999999999987654
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.72 E-value=6.5e-07 Score=82.81 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHHHHHHHHHHH
Q 038906 107 LGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLT-RSQFAVILPLAVADTLGNLL 185 (276)
Q Consensus 107 ~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s-~~~~~~~lplgl~~~~~~~l 185 (276)
....+.+|.... ...|++. .++.++.+ ++.++.+++.+.... .+.++.+ ++.+..-+.-|+++..++.+
T Consensus 6 ~lia~~~wGs~g----~~~k~~~-g~~~~~~~---~~~~g~l~~~~~~~~--~~~~~~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 6 ALIPALFWGSFV----LINVKIG-GGPYSQTL---GTTFGALILSIAIAI--FVLPEFWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred HHHHHHHHhhhH----HHHhccC-CCHHHHHH---HHHHHHHHHHHHHHH--HhCCcccccHHHHHHHHHHHHHHhhhhh
Confidence 344556666544 3345554 55544443 455565544332221 1222222 33444445556668889999
Q ss_pred HHHHHhccchhhhhhhcc-chHHHHHHHHHHHhcccCChhh----HHHHHHHHHhhhhhcccccc-------cc-HHHHH
Q 038906 186 TNISLGTVNVSFTHTIKA-MEPFFTVLFAALFLREKPTIWL----VPSLVPIVGGVALASLTEAS-------FN-WTGFC 252 (276)
Q Consensus 186 ~n~al~~vsvs~~~~ika-~~Pvftvils~l~l~er~s~~~----~lsl~liv~GV~La~~~e~~-------f~-~~G~l 252 (276)
...+.+++.++.+..+-+ +.++++.+.+.+++||+.++++ ++++++++.|+.+....+.+ .| ..|++
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~ 155 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGIL 155 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHH
Confidence 999999999999988888 8888999999999999999999 99999999999997653211 34 78999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 038906 253 SAMASNVTNQSRNVFSKKFM 272 (276)
Q Consensus 253 ~alls~i~~al~~V~~Kkll 272 (276)
++++|.++++.+.+..|+..
T Consensus 156 ~~l~sg~~y~~~~~~~~~~~ 175 (290)
T TIGR00776 156 LLLMSTIGYLVYVVVAKAFG 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999753
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.68 E-value=1.2e-06 Score=78.20 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhh
Q 038906 121 FNIFNKQVLKVFPY-PTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~-P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~ 198 (276)
..++.|+..++.+. +..++.+++.++.+++....... .+.+..+.+++..++.++++ ..++..+.+.++++.+++.+
T Consensus 143 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 143 GTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFL-GPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 34678888876652 34555567888776654432221 12223355666667777776 56789999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhh
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVA 237 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~ 237 (276)
.++..++|++++++++++++|+++..++.+..+++.|++
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999863
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.62 E-value=2.4e-06 Score=77.39 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=112.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK 202 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik 202 (276)
-+.|.++..+. |.-++.+|..++.+++...+.- .+.+.++++++.++..|+.....+.+-..|++.+|.+.+..|.
T Consensus 29 s~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RP---wr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiE 104 (292)
T COG5006 29 SFAKSLFPLVG-AAGVTALRLAIAALILLALFRP---WRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIE 104 (292)
T ss_pred HHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhH---HHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 35688877777 9999999999998876554421 2346788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc---ccccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038906 203 AMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE---ASFNWTGFCSAMASNVTNQSRNVFSKKFMV 273 (276)
Q Consensus 203 a~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e---~~f~~~G~l~alls~i~~al~~V~~Kkll~ 273 (276)
.+-|+.+.+++ .+|.. ....+.+.+.|+.+..-.. .+.|..|..+++.+..||+.|-+..||.-+
T Consensus 105 F~GPL~vA~~~----sRr~~--d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~ 172 (292)
T COG5006 105 FTGPLAVALLS----SRRLR--DFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR 172 (292)
T ss_pred hccHHHHHHHh----ccchh--hHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc
Confidence 99999888764 33433 3445556677777765322 457899999999999999999999998753
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.58 E-value=1.8e-06 Score=79.29 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHhh-------cCCchHHHHHHHHHHHHHHHHHHHHhhhcC-CCC-------CChH---H--HHHHHH
Q 038906 115 YLLNIYFNIFNKQVLK-------VFPYPTTVTAFQFGCGSVMIILMWTLNLYT-RPK-------LTRS---Q--FAVILP 174 (276)
Q Consensus 115 ~~~s~~~~i~nK~iL~-------~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~-~~~-------~s~~---~--~~~~lp 174 (276)
..++..-++..||.=+ .|+.|..-+..-|+--.+|+.+..+.+.+. ++. +..+ . -+..+|
T Consensus 12 vvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~ 91 (372)
T KOG3912|consen 12 VVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLP 91 (372)
T ss_pred hhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecC
Confidence 4455555678888754 277787775544333334433333322211 110 0011 1 244678
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc----------
Q 038906 175 LAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA---------- 244 (276)
Q Consensus 175 lgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~---------- 244 (276)
-++|-..+..+-+.++.+.+++-+||++....+|+.+++..+++.+++.++|+++..+++|+++....|.
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038906 245 SFNWTGFCSAMASNVTNQSRNVFSKKFMVR 274 (276)
Q Consensus 245 ~f~~~G~l~alls~i~~al~~V~~Kkll~~ 274 (276)
+--.+|.++.+++-+.-+.+.++-+|.+++
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~ 201 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKK 201 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 223789999999999999999999888765
No 32
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.51 E-value=5.2e-06 Score=76.54 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFTH 199 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~~ 199 (276)
+++..|+..++.+ |..++ .+.+++.+.+....... ......+...+...+.++++ ..+++.+.|+++++++.+.+.
T Consensus 163 ~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 163 YILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQ-AGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHc-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 3466677766655 66654 45555554433222111 11122344455555677776 467888999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 200 TIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 200 ~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
++-.++|++.++++.++++|+++..++++.+++++|+++...
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.49 E-value=5.8e-06 Score=78.95 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH-HHhhhcCC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILM-WTLNLYTR----PKLTRSQFAVILPLAVADTLGNLLTNISLGTVNV 195 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~-~~~~~~~~----~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsv 195 (276)
.++..|....+++.+...+++++.++.+.+.+. ........ ...+.. ...++..+++-.+++.+-|++++++++
T Consensus 204 ~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga 282 (358)
T PLN00411 204 SFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGP 282 (358)
T ss_pred HHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 346777777888756677778887776554332 22110000 011112 222444455545678889999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 196 SFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 196 s~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
+.+.+...++|++++++++++++|++++.++++.+++++|+.++..
T Consensus 283 ~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 283 LYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred hHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999874
No 34
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.48 E-value=1.2e-05 Score=75.96 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc--
Q 038906 166 RSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE-- 243 (276)
Q Consensus 166 ~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e-- 243 (276)
+++..++...+++|+..+-+...++.+.+.+++++...+..+.|++++.+++++|.++.+|.++++.++|+.+.-..+
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 334566777788899887799999999999999999999999999999999999999999999999999999986211
Q ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 038906 244 ---------ASFNWTGFCSAMASNVTNQSRNVFSKKFMVRK 275 (276)
Q Consensus 244 ---------~~f~~~G~l~alls~i~~al~~V~~Kkll~~k 275 (276)
.+-.+.|+..++.++++.++-+++.+|++|+.
T Consensus 169 ~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s 209 (345)
T KOG2234|consen 169 PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS 209 (345)
T ss_pred CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12248999999999999999999999999875
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.40 E-value=9.2e-06 Score=74.96 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHT 200 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ 200 (276)
+++++|+.-++.+ |+... +.. +.+.+.+............+.+.+..++..++...+++.+.|+++++.+++.+.+
T Consensus 171 ~~v~~k~~~~~~~-~~~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~ 246 (295)
T PRK11689 171 YCNVTRKYARGKN-GITLF--FIL-TALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLAT 246 (295)
T ss_pred HHHHHhhccCCCC-chhHH--HHH-HHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4567777765554 65442 222 2222222111111111234556666666666656678999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 201 IKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 201 ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
+-.++|++.+++++++++|+++..++++.++++.|+.+...
T Consensus 247 ~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 247 ASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999999999988754
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.39 E-value=1.2e-05 Score=74.02 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH-HhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhh
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMW-TLNLYTRPKLTRSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFTHT 200 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~-~~~~~~~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~~~ 200 (276)
+.+|+.-. +++...+.+|+.++...+.+.. ..........+.+.+..++.++++ ...++.+.++++++++++...+
T Consensus 167 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~ 244 (292)
T PRK11272 167 VWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATS 244 (292)
T ss_pred HHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 45666532 2356677889888776544332 211111111245667777777876 5678899999999999999999
Q ss_pred hccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc
Q 038906 201 IKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE 243 (276)
Q Consensus 201 ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e 243 (276)
+..++|++.+++++++++|+++..++++.++++.|+.+....+
T Consensus 245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543
No 37
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.24 E-value=9.7e-05 Score=68.21 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCch--HHHHHHHHHHHHHHHHH-HHHhhhcC-----CCCCChHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 038906 121 FNIFNKQVLKVFPYP--TTVTAFQFGCGSVMIIL-MWTLNLYT-----RPKLTRSQFAVILPLAVA-DTLGNLLTNISLG 191 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P--~~Lt~~q~~v~~l~l~l-~~~~~~~~-----~~~~s~~~~~~~lplgl~-~~~~~~l~n~al~ 191 (276)
++++.|+..++++.| ..+...+++++.+.... ........ ....+.+.+..++.++++ ..+++.+.+.+++
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~ 237 (299)
T PRK11453 158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG 237 (299)
T ss_pred HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677766555434 33444555554433222 11111000 012355667777788876 4578899999999
Q ss_pred ccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc
Q 038906 192 TVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 192 ~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~ 242 (276)
+.+...+.++..++|++.+++++++++|+++..++++.+++++|+.+...+
T Consensus 238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999887643
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.23 E-value=3.7e-05 Score=61.61 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 178 ADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 178 ~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
++.....+-..+++++|++.+..+-++.++++++++++++||++++.+++++++++.|+++..
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466788889999999999999999999999999999999999999999999999999998765
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.18 E-value=1.8e-05 Score=72.31 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhh
Q 038906 171 VILPLA-VADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 171 ~~lplg-l~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~L 238 (276)
..+..+ +....++.+.++++++++++.......++|++.++++++++||+++..++++.++++.|+.+
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 334444 44667899999999999999999999999999999999999999999999999999999876
No 40
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.17 E-value=1.1e-06 Score=80.46 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=106.5
Q ss_pred HHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHH-HhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhh
Q 038906 124 FNKQVLKVFPY-PTTVTAFQFGCGSVMIILMW-TLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGT-VNVSFTHT 200 (276)
Q Consensus 124 ~nK~iL~~f~~-P~~Lt~~q~~v~~l~l~l~~-~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~-vsvs~~~~ 200 (276)
.-..+.++.|- -..+|+.||++-+.--++.. .....| |+++. |..+.+-..|.+.++++|+++++ +|++.+.+
T Consensus 21 ~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k-~kipl---k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiI 96 (330)
T KOG1583|consen 21 FLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVK-PKIPL---KDYAITVAMFFIVNVTNNYALKFNIPMPLHII 96 (330)
T ss_pred HHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccC-CCCch---hhhheehheeeeeeeeccceeeecccceEEEE
Confidence 34555555442 25788899988665433221 111112 44443 44456666777889999999997 89999999
Q ss_pred hccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc---cc--------------ccc--HHHHHHHHHHHHHH
Q 038906 201 IKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT---EA--------------SFN--WTGFCSAMASNVTN 261 (276)
Q Consensus 201 ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~---e~--------------~f~--~~G~l~alls~i~~ 261 (276)
+|+..++-++++++++.|+|++.+++.+++.+++|+++++.. |. ++. ..|+.+..++.+..
T Consensus 97 fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~s 176 (330)
T KOG1583|consen 97 FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLS 176 (330)
T ss_pred EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998742 11 111 36888888888888
Q ss_pred HHHHHHHHhhcc
Q 038906 262 QSRNVFSKKFMV 273 (276)
Q Consensus 262 al~~V~~Kkll~ 273 (276)
+.-.++++..-+
T Consensus 177 a~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 177 AYMGIYQETTYQ 188 (330)
T ss_pred HHHHHHHHHHHH
Confidence 888888776544
No 41
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.14 E-value=2.1e-06 Score=78.43 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Q 038906 115 YLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVI-LPLAVADTLGNLLTNISLGTV 193 (276)
Q Consensus 115 ~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~-lplgl~~~~~~~l~n~al~~v 193 (276)
|++|..+.+..|...+ .|..+...|+++-.+..+.+.+.. +.+-+-++..|.+ +.=|+....+..+..+|++|.
T Consensus 47 ~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~--~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~m 121 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYY--MQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYM 121 (346)
T ss_pred HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEE--eeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhc
Confidence 5555555555555433 377777767555444433322111 1111111111222 334556677888889999999
Q ss_pred chhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc-----cc---------ccccHHHHHHHHHHHH
Q 038906 194 NVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL-----TE---------ASFNWTGFCSAMASNV 259 (276)
Q Consensus 194 svs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~-----~e---------~~f~~~G~l~alls~i 259 (276)
+.+=+.+|..++|+||.+++++++||+++....++.++...||++++- |+ .+.+..|...++.+.+
T Consensus 122 slaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~l 201 (346)
T KOG4510|consen 122 SLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVL 201 (346)
T ss_pred chhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHh
Confidence 999999999999999999999999999999999999999999999862 22 1345678777777777
Q ss_pred HHHHHHHHHHhhccc
Q 038906 260 TNQSRNVFSKKFMVR 274 (276)
Q Consensus 260 ~~al~~V~~Kkll~~ 274 (276)
.-+.-.|..+++-++
T Consensus 202 f~asvyIilR~iGk~ 216 (346)
T KOG4510|consen 202 FGASVYIILRYIGKN 216 (346)
T ss_pred hhhhHHHHHHHhhcc
Confidence 777766776666444
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.11 E-value=3.6e-05 Score=70.98 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=84.1
Q ss_pred HHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHH-hhhcCCCC---------CChHH-HHHHHHHHH-HHHHHHHHH
Q 038906 121 FNIFNKQVLK--VFPYPTTVTAFQFGCGSVMIILMWT-LNLYTRPK---------LTRSQ-FAVILPLAV-ADTLGNLLT 186 (276)
Q Consensus 121 ~~i~nK~iL~--~f~~P~~Lt~~q~~v~~l~l~l~~~-~~~~~~~~---------~s~~~-~~~~lplgl-~~~~~~~l~ 186 (276)
.+++.|+..+ +++ |+.++..++..+.+++.+... ........ ..... +...+..++ ++...+.+.
T Consensus 160 ~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (302)
T TIGR00817 160 RNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVA 238 (302)
T ss_pred HHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788877 565 888999999888766544322 11000000 00001 111222222 333344566
Q ss_pred HHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 187 NISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 187 n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
+.++++++...+.++-.++|++++++++++++|+++..++++.++++.|+.+...
T Consensus 239 ~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 239 FMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988764
No 43
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.07 E-value=0.00022 Score=65.85 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH-HhhhcCCC---CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 038906 114 WYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMW-TLNLYTRP---KLTRSQFAVILPLAVADTLGNLLTNIS 189 (276)
Q Consensus 114 w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~-~~~~~~~~---~~s~~~~~~~lplgl~~~~~~~l~n~a 189 (276)
+..++. +-++.|.+ +..+ +..+..-|.+-+..++.+.. ..+..+.- ..+++.+...+..+++-..+-....+|
T Consensus 16 y~lwG~-lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWA 92 (293)
T COG2962 16 YLLWGL-LPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWA 92 (293)
T ss_pred HHHHHH-HHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhee
Confidence 333443 34555554 4455 67777778777776554332 22221110 111223333333334444444555566
Q ss_pred HhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 038906 190 LGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASNVTNQSRNVFSK 269 (276)
Q Consensus 190 l~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~~al~~V~~K 269 (276)
..+..+=-+.+=....|++.++++.+|+|||+++.+++++++..+||..-.....++.|..+.+ +++|++|...-|
T Consensus 93 vn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~RK 168 (293)
T COG2962 93 VNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLRK 168 (293)
T ss_pred cCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHHH
Confidence 6554444444555779999999999999999999999999999999999887777788876654 578899988877
Q ss_pred hhcc
Q 038906 270 KFMV 273 (276)
Q Consensus 270 kll~ 273 (276)
++--
T Consensus 169 ~~~v 172 (293)
T COG2962 169 KLKV 172 (293)
T ss_pred hcCC
Confidence 6543
No 44
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.01 E-value=2.9e-06 Score=74.62 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc--cc
Q 038906 168 QFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE--AS 245 (276)
Q Consensus 168 ~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e--~~ 245 (276)
..+...|.+++.++.+..+-.+++.++.+-+.-+-++.--|+.+++.+.+|+|+..-+.++.++.+.|+++..+.| ..
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 3466789999999999999999999999999999999999999999999999999999999999999999988654 45
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 038906 246 FNWTGFCSAMASNVTNQSRNVFSKKFMVRK 275 (276)
Q Consensus 246 f~~~G~l~alls~i~~al~~V~~Kkll~~k 275 (276)
..+.|+.+++.|++..++|.+..|++..+.
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 679999999999999999999999987654
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.94 E-value=0.00032 Score=64.77 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.+..++....++.+.+.++++.+.+.+..+...+|++.+++++++++|+++..++.+.++++.|+.+..
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344555566789999999999999999999999999999999999999999999999999988877764
No 46
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.92 E-value=0.00064 Score=55.89 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhc------CCchHHHHHHHHHHHHHHHHHHHHh-hhcCC------C---CC--ChHHHHHHHHHHH
Q 038906 116 LLNIYFNIFNKQVLKV------FPYPTTVTAFQFGCGSVMIILMWTL-NLYTR------P---KL--TRSQFAVILPLAV 177 (276)
Q Consensus 116 ~~s~~~~i~nK~iL~~------f~~P~~Lt~~q~~v~~l~l~l~~~~-~~~~~------~---~~--s~~~~~~~lplgl 177 (276)
.+....+++.|+.+++ -..|+.+....-..+.+++.+.+.. ...+. . +. +.+.+..++..++
T Consensus 10 ~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (153)
T PF03151_consen 10 LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGL 89 (153)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 4455566777888775 2237777666555565555443322 11110 0 00 1233455556667
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 178 ADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 178 ~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
+....+..+...+++++.-.++++.....+++.+++.++++|+++..+++++++.+.|+.+-.
T Consensus 90 ~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 90 LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 777889999999999999999999999999999999999999999999999999999987643
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.85 E-value=0.001 Score=59.38 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCCchHHHHH-HHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhh
Q 038906 121 FNIFNKQVLKVFPYPTTVTA-FQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADT-LGNLLTNISLGTVNVSFT 198 (276)
Q Consensus 121 ~~i~nK~iL~~f~~P~~Lt~-~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~-~~~~l~n~al~~vsvs~~ 198 (276)
.+..+|++. +.+ +..... .++. ............... ...+...+.....++++.. .++.+.+.+++..+++..
T Consensus 169 ~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 244 (292)
T COG0697 169 YTALVKRLS-RLG-PVTLALLLQLL-LALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLV 244 (292)
T ss_pred HHHHHHHhc-CCC-hHHHHHHHHHH-HHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 456777776 433 555555 5554 222222221111111 2345567777888888765 589999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc
Q 038906 199 HTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 199 ~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~ 242 (276)
.++..++|++.+++++++++|+++..++++.++++.|+.+....
T Consensus 245 ~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 245 ALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887643
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.77 E-value=0.00061 Score=63.02 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH---HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 038906 102 IQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFG---CGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVA 178 (276)
Q Consensus 102 ~~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~---v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~ 178 (276)
++-+..+....+-|.. +...+|.. .++ |...++.|+. ++..+..... + +.+|. ..+.....+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~---~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLV---YVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--I-LAKPL-KKYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--h-cccch-HHHHHHHHHHHHHH
Confidence 3344445455554443 33566754 344 7777655544 2332222211 1 11222 23333334448888
Q ss_pred HHHHHHHHHHHHh-ccchhhhhhhccchHHHHHHHHHHHhcccCChhhH----HHHHHHHHhhhhhcc
Q 038906 179 DTLGNLLTNISLG-TVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLV----PSLVPIVGGVALASL 241 (276)
Q Consensus 179 ~~~~~~l~n~al~-~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~----lsl~liv~GV~La~~ 241 (276)
+..++.+...+.+ +++++.+.++-+.+|+...+.+.++++|+.+++++ ++.++++.|+.+...
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 8888999999999 99999999999999999999999999999999999 999999999988653
No 49
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.60 E-value=0.0021 Score=61.12 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcCC-----c-hHHHHHHHHHHHHHHHHHHHH-hhhcC-C-------CCCChHHHH----HHHHHHHHHH
Q 038906 120 YFNIFNKQVLKVFP-----Y-PTTVTAFQFGCGSVMIILMWT-LNLYT-R-------PKLTRSQFA----VILPLAVADT 180 (276)
Q Consensus 120 ~~~i~nK~iL~~f~-----~-P~~Lt~~q~~v~~l~l~l~~~-~~~~~-~-------~~~s~~~~~----~~lplgl~~~ 180 (276)
..+++.|..+++.+ + +..+..++..++.++++.... ....+ . ...+...+. .++.-++++.
T Consensus 208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~ 287 (350)
T PTZ00343 208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYY 287 (350)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Confidence 35677888876532 2 444555566677665544322 11000 0 001110111 1222233344
Q ss_pred HHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 181 LGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 181 ~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
+.+.+..+++++++...+.+.-.+.|+++.+++.++++|+++..+++|.+++++|+.+..
T Consensus 288 l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 288 LYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 444445579999999999999999999999999999999999999999999999998754
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.48 E-value=0.00063 Score=56.01 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=61.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHH--HhcccCChhhHHHHHHHHHhhhhhccc
Q 038906 172 ILPLAV-ADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAAL--FLREKPTIWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 172 ~lplgl-~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l--~l~er~s~~~~lsl~liv~GV~La~~~ 242 (276)
.+.+|+ ++.++..+-+++++++|++.+.-+-+..++++.+.+.. +++|++++.++++++++++|+.+...+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 345665 47788899999999999999998888888888888875 899999999999999999999997643
No 51
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.29 E-value=0.0035 Score=51.06 Aligned_cols=70 Identities=16% Similarity=0.373 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhh-ccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTI-KAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~i-ka~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
.+..-+++..+..+-..+++++|++.+.-+ ...--+.+++.+.++++|++++.+++++.+++.|+.+.-.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 344555678888899999999999998777 4688899999999999999999999999999999988754
No 52
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.18 E-value=0.0085 Score=55.25 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=90.4
Q ss_pred CCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccCChhhHH----HHHHH
Q 038906 160 TRPKLTR--SQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKPTIWLVP----SLVPI 232 (276)
Q Consensus 160 ~~~~~s~--~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~s~~~~l----sl~li 232 (276)
.+|..+. +.+..-+.-|+++.++......|++++.+|.+.=+- .+.-+.+.+.++++++|..+...++ +++++
T Consensus 34 ~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~li 113 (269)
T PF06800_consen 34 RQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLI 113 (269)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Confidence 4556653 666677788899999999999999999988876554 5667779999999999998877654 89999
Q ss_pred HHhhhhhcccccc--------ccHHHHHHHHHHHHHHHHHHHHHHhh
Q 038906 233 VGGVALASLTEAS--------FNWTGFCSAMASNVTNQSRNVFSKKF 271 (276)
Q Consensus 233 v~GV~La~~~e~~--------f~~~G~l~alls~i~~al~~V~~Kkl 271 (276)
++|+.+.+..|.+ ....|+...+++.+.|..|.++-|-.
T Consensus 114 iiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~ 160 (269)
T PF06800_consen 114 IIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF 160 (269)
T ss_pred HHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999875422 12569999999999999999987753
No 53
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.18 E-value=0.0058 Score=48.98 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 174 PLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 174 plgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
..-+++..+..+-..+++++|++.+.-+- ...-+.+++.+.++++|++++.+++++.+++.|+++.-.
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445777778888899999999988774 468888999999999999999999999999999998754
No 54
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.04 E-value=0.011 Score=47.07 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.+..-+++..+..+-..+++++|++.+.-+= ..--+.+++.+.+++||+.++.+++++.+++.|++..-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3444556778888888999999999876554 47778899999999999999999999999999998764
No 55
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.99 E-value=0.018 Score=46.19 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhh
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALA 239 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La 239 (276)
.+..-+++..+..+-..+++++|++.+.-+= ..--+.+++.+.++++|++++.+++++.+++.|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444556777888888999999999875443 4667788999999999999999999999999999875
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.98 E-value=0.018 Score=53.33 Aligned_cols=132 Identities=12% Similarity=0.261 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHH-HH--hhhcCC-CC---CChHHHHHHHHHHHHHHH
Q 038906 110 MFGLWYLLNIYFNIFNKQVLKVFP-YPTTVTAFQFGCGSVMIILM-WT--LNLYTR-PK---LTRSQFAVILPLAVADTL 181 (276)
Q Consensus 110 ~~~~w~~~s~~~~i~nK~iL~~f~-~P~~Lt~~q~~v~~l~l~l~-~~--~~~~~~-~~---~s~~~~~~~lplgl~~~~ 181 (276)
++.+...+......++|+++++++ .|..+.+...+++.++..+. +. .+.... .+ ..++.+..++..+++...
T Consensus 158 ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~ 237 (303)
T PF08449_consen 158 LLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGAL 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334445666667789999998653 36666666666666554332 22 111110 00 112345566677777777
Q ss_pred HHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 182 GNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 182 ~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
+..+-+...+..+.-...++..+--+++++++.+++++++++..|.|+++++.|..+-..
T Consensus 238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 777777778888888888999999999999999999999999999999999999887654
No 57
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.86 E-value=0.053 Score=51.59 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH-HHhhhcCCCCC--ChHHHHHHHH
Q 038906 98 PSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILM-WTLNLYTRPKL--TRSQFAVILP 174 (276)
Q Consensus 98 ~~~~~~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~-~~~~~~~~~~~--s~~~~~~~lp 174 (276)
+.+....+..+..+.+|-.. +.+.|+.+++.+ +..+...--+++.++..+. ..+...+-.+. +.+.+...+.
T Consensus 164 ~~~i~GDll~l~~a~lya~~----nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~ 238 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVS----NVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVG 238 (334)
T ss_pred CccchhHHHHHHHHHHHHHH----HHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHH
Confidence 34555566666566665443 466788888766 3333222223344433221 11211111122 3333332233
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc
Q 038906 175 LAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 175 lgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~ 242 (276)
.+++....+.+....+++.++.+..+--.++.++.+++..+++++++++.-+++.+++++|+++....
T Consensus 239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence 33333334445567788888888878778899999999999999999999999999999999998754
No 58
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.71 E-value=0.0034 Score=55.39 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=70.3
Q ss_pred cchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccc---------------------------c
Q 038906 193 VNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEA---------------------------S 245 (276)
Q Consensus 193 vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~---------------------------~ 245 (276)
++++.....|+..++++++....+.++|++..++++.++++.|+.....++. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 6788888999999999999999999999999999999999999885322110 1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 038906 246 FNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 276 (276)
Q Consensus 246 f~~~G~l~alls~i~~al~~V~~Kkll~~k~ 276 (276)
..+.|....+.+.++.++..++.++.++++|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD 112 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence 2477888899999999999999999888764
No 59
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=96.67 E-value=5.1e-05 Score=69.14 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038906 116 LLNIYFNIFNKQVLKV-FPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVN 194 (276)
Q Consensus 116 ~~s~~~~i~nK~iL~~-f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vs 194 (276)
.+...+++.+.++-.. .+-|..-+++-...=+++.-.+..+ ++ +.-+..|+..+.+|+.-.-++.+--.|+||.+
T Consensus 28 L~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~f---R~-~~~~~~~~hYilla~~DVEaNy~vV~AyQyTs 103 (336)
T KOG2766|consen 28 LLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLF---RR-KYIKAKWRHYILLAFVDVEANYFVVKAYQYTS 103 (336)
T ss_pred HHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHh---hh-HHHHHHHHHhhheeEEeecccEEEeeehhhcc
Confidence 3444456667777665 6678777666443322221111112 22 22234456677888877777777778999999
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccccc--------ccHHHHHHHHHHHHHHHHHHH
Q 038906 195 VSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEAS--------FNWTGFCSAMASNVTNQSRNV 266 (276)
Q Consensus 195 vs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~--------f~~~G~l~alls~i~~al~~V 266 (276)
..-.+.+-.-..+.+++++++|++.|+.+.+..++++.+.||.+.+..|.. -...|.+++++++-+|+.-|+
T Consensus 104 mtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv 183 (336)
T KOG2766|consen 104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNV 183 (336)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccc
Confidence 998999999999999999999999999999999999999999998765421 125677777777777777777
Q ss_pred HHHhhcccC
Q 038906 267 FSKKFMVRK 275 (276)
Q Consensus 267 ~~Kkll~~k 275 (276)
..+.+.++.
T Consensus 184 ~EEflvkn~ 192 (336)
T KOG2766|consen 184 SEEFLVKNA 192 (336)
T ss_pred cHHHHHhcC
Confidence 666655543
No 60
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.63 E-value=0.065 Score=49.11 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=76.2
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CChHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhhh
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPK-LTRSQFAVILPLAVAD-TLGNLLTNISLGTVNVSFTHT 200 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~-~s~~~~~~~lplgl~~-~~~~~l~n~al~~vsvs~~~~ 200 (276)
+..|.+=+.-|-+..+ .+-+++++++.+..-... ..+. .+++.+..-+.++++- .+-+.+...++...|.....+
T Consensus 165 v~G~r~g~~~~g~~g~-a~gm~vAaviv~Pig~~~--ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~ 241 (292)
T COG5006 165 VLGQRAGRAEHGTAGV-AVGMLVAALIVLPIGAAQ--AGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGT 241 (292)
T ss_pred HHcchhcccCCCchHH-HHHHHHHHHHHhhhhhhh--cchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHH
Confidence 4445554333333333 345666655443321111 1111 2333344444555553 345889999999999999999
Q ss_pred hccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhh
Q 038906 201 IKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 201 ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~L 238 (276)
+-+++|.+.++...++++|.++..+|++++.++.+.+=
T Consensus 242 LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 242 LLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999887663
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.013 Score=46.65 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhh-hccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHT-IKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~-ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.+..-+++..+..+-..+++++|++.+-- --..-.+.+++.++++++|+.+..+++++.+++.|++..-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 34455567778888889999999998643 3456677789999999999999999999999999998764
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.33 E-value=0.032 Score=43.11 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccchhhhhhh-ccchHHHHHHHHHHHhcccCChhhHHHHHHH
Q 038906 178 ADTLGNLLTNISLGTVNVSFTHTI-KAMEPFFTVLFAALFLREKPTIWLVPSLVPI 232 (276)
Q Consensus 178 ~~~~~~~l~n~al~~vsvs~~~~i-ka~~Pvftvils~l~l~er~s~~~~lsl~li 232 (276)
++..+..+-..+++++|++.+.-+ .....+.+.+.+.++++|+++..+++++.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 678888899999999999998654 5689999999999999999999999998764
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.25 E-value=0.24 Score=46.15 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH-HhhhcCC-CC-CChHHHHHHHHHHHHHHHHHHHHHH
Q 038906 112 GLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMW-TLNLYTR-PK-LTRSQFAVILPLAVADTLGNLLTNI 188 (276)
Q Consensus 112 ~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~-~~~~~~~-~~-~s~~~~~~~lplgl~~~~~~~l~n~ 188 (276)
.++.+.+...+...|+.+.. + +.+=.+++++.-...++... ....... .. -+...+..+...|+..+.-..+...
T Consensus 153 al~la~sf~~Ygl~RK~~~v-~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 153 ALALALSFGLYGLLRKKLKV-D-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCC-c-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555442 2 33333345555443332221 1111110 00 1234555666777788888899999
Q ss_pred HHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 189 SLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 189 al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
|-+.+|.+...++.+.+|....+++.++++|.++..++.+.+++-.|+++.+.
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888764
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.88 E-value=0.25 Score=45.67 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhH----HHHHHHHHhhh
Q 038906 165 TRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLV----PSLVPIVGGVA 237 (276)
Q Consensus 165 s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~----lsl~liv~GV~ 237 (276)
.++.++ -+.-|+++..++.+...|.+.+.++..-.+..+..+...+.+.+++||+=+++++ +++++++.|.+
T Consensus 192 ~k~~~~-nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 192 EKKSWK-NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred ccchHH-hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 344444 4578899999999999999999999999999999999999999999999887765 34444555543
No 65
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.82 E-value=0.081 Score=46.56 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhh
Q 038906 172 ILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 172 ~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~L 238 (276)
...+.++.+.+..+.++.++|.+.....++-.+.++++.+++.++++|+++...+++..++..|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3444556777777888899999999999999999999999999999999999999999999988754
No 66
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.74 E-value=0.019 Score=46.35 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh-ccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 169 FAVILPLAVADTLGNLLTNISLGTVNVSFTHTI-KAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 169 ~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~i-ka~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
++..+|..+ +-.+.+..++.+...++|.+.-+ .+++=+||++.++++++|..++++++++.+++.|+.+++
T Consensus 42 ~~y~ipf~l-Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 42 PKYIIPFLL-NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 345566654 44456666778999999999877 599999999999999999999999999999999998753
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.61 E-value=0.021 Score=53.43 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=61.7
Q ss_pred HHHHHH-HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 173 LPLAVA-DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 173 lplgl~-~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
...|+. +..+.+++..|+.+.|.+..+-+-+..-++.++++..+++||+++..+.+.+++++|+.+..
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 445554 67788899999999999999999999999999999999999999999999999999998765
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.81 E-value=2.8 Score=34.72 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q 038906 123 IFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYT-RPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTI 201 (276)
Q Consensus 123 i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~-~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~i 201 (276)
.+|-.+-+....|+.-+++-+.++.+.+.+.+.....+ ..+.....|..+ .=|++-.....+.+++...+.++.+..+
T Consensus 18 ~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~-lGG~lG~~~V~~~~~~vp~lG~~~~~~l 96 (138)
T PF04657_consen 18 AFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAY-LGGLLGVFFVLSNIILVPRLGAALTTIL 96 (138)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHh-ccHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444444444599899998899888765554432221 111112223322 2555666667777888888888877665
Q ss_pred c-cchHHHHHHHHHH----HhcccCChhhHHHHHHHHHhhhh
Q 038906 202 K-AMEPFFTVLFAAL----FLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 202 k-a~~Pvftvils~l----~l~er~s~~~~lsl~liv~GV~L 238 (276)
- ...-+..+++..+ .-++++++.+.+++.+++.|+.+
T Consensus 97 ~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 97 IVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5 4455555666664 34788999999999999999864
No 69
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.94 Score=42.58 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-HHHHHhhhcC----CC-----CCChHHHHHHHHHHH
Q 038906 108 GGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMI-ILMWTLNLYT----RP-----KLTRSQFAVILPLAV 177 (276)
Q Consensus 108 ~~~~~~w~~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l-~l~~~~~~~~----~~-----~~s~~~~~~~lplgl 177 (276)
..++..+.++-..++...+.+++++. ++.+|+.++.-+. .+.+...... .+ +..++.++-++.++.
T Consensus 174 ~~Ll~~~L~fDgfTn~tQd~lf~~~k----~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 174 ILLLFGYLLFDGFTNATQDSLFKKYK----VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred HHHHHHHHHHHhhHHhHHHHHhccCC----ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 34556666667778889999999776 6667776655322 2222211111 01 223567788899999
Q ss_pred HHHHHHHHHHHHHh-ccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhh
Q 038906 178 ADTLGNLLTNISLG-TVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 178 ~~~~~~~l~n~al~-~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~L 238 (276)
+.+.|..+-.+.++ +.|+.++ +|..+==++..+++.+.++.+.+..+|.+.+++..|..+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t-~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFT-TIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhhheehhhHhhcccHHHH-HHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 98888666655554 4566665 666777889999999999999999999998888777665
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.31 E-value=3 Score=39.92 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccC---C----hhhHHHHHHHHHhh
Q 038906 165 TRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKP---T----IWLVPSLVPIVGGV 236 (276)
Q Consensus 165 s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~---s----~~~~lsl~liv~GV 236 (276)
+.+.+...+.-|++...++.+...+++++.+|.+.-|- .+.-++..++..++++|-. + ....++++++++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 45566667778888999999999999999999886444 6677888888888888654 2 33578889999999
Q ss_pred hhhcc----ccc--------ccc-HHHHHHHHHHHHHHHHHHH
Q 038906 237 ALASL----TEA--------SFN-WTGFCSAMASNVTNQSRNV 266 (276)
Q Consensus 237 ~La~~----~e~--------~f~-~~G~l~alls~i~~al~~V 266 (276)
++... .|. ++| -.|+++++++.+.++.++.
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 99886 332 133 6899999999999999994
No 71
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=92.92 E-value=0.15 Score=47.21 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhh
Q 038906 165 TRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALA 239 (276)
Q Consensus 165 s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La 239 (276)
.++++....-+|++..++.++-.+++|.=-++-..+++.+.-+|..+...+|+++.+++.+|.+.++++.-.+.+
T Consensus 249 cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 249 CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 456666777899998899999999999877777889999999999999999999999999998877766555444
No 72
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=92.70 E-value=3.5 Score=36.75 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHH
Q 038906 167 SQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALF 216 (276)
Q Consensus 167 ~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~ 216 (276)
++|..++.++++...++.+.+.++++++++...+.-+++|++.++++.++
T Consensus 206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 46777778888777889999999999999999999999999999998764
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.53 E-value=9.7 Score=36.49 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhh---hc-cchHHHHHHHHHHHhcccCC------hhhHHHHHHHHHhhhhhccc
Q 038906 173 LPLAVADTLGNLLTNISLGTVNVSFTHT---IK-AMEPFFTVLFAALFLREKPT------IWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 173 lplgl~~~~~~~l~n~al~~vsvs~~~~---ik-a~~Pvftvils~l~l~er~s------~~~~lsl~liv~GV~La~~~ 242 (276)
+.-|+....++.+..++-..++++..-+ +. ++.-++..+... ++||+=+ ...+++++++++|..+...+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 5566678888888888888886665555 66 444455555554 6888866 55577888888888877654
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.32 E-value=1.6 Score=41.21 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhh----cCCchHHHHHHHHHHHHHHHH-HHHHhhhcCCC------CCChHHHHHHHHHHHHHHH
Q 038906 113 LWYLLNIYFNIFNKQVLK----VFPYPTTVTAFQFGCGSVMII-LMWTLNLYTRP------KLTRSQFAVILPLAVADTL 181 (276)
Q Consensus 113 ~w~~~s~~~~i~nK~iL~----~f~~P~~Lt~~q~~v~~l~l~-l~~~~~~~~~~------~~s~~~~~~~lplgl~~~~ 181 (276)
.+.+....-+++.|.++. +.+ ++.+...+--++...++ ..+.....+.. ..+.. ....+..+++..+
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~f~ 247 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVLAFL 247 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHHHHH
Confidence 334445556788888885 255 77676555555555444 32222111000 11111 2334445566677
Q ss_pred HHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 182 GNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 182 ~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.+....+.+..++.=.+++...+.-+++++.++++++++.++...++.++.++|+.+..
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 77888888999998888898888888899999999999999999999999999998865
No 75
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=0.22 Score=47.04 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=62.0
Q ss_pred HHHHHH-HHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 173 LPLAVA-DTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 173 lplgl~-~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
...|++ +..|-..+..|+.+.|.++.+=+-+++-++.++++..+++|+.+..-.++.+++++|-.+.+.
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 345655 677888999999999999999999999999999999999999999999999999999888764
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=87.23 E-value=20 Score=32.34 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-HHHHHhhhcCCCC-CC-hHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 038906 116 LLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMI-ILMWTLNLYTRPK-LT-RSQF-AVILPLAVADTLGNLLTNISLG 191 (276)
Q Consensus 116 ~~s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l-~l~~~~~~~~~~~-~s-~~~~-~~~lplgl~~~~~~~l~n~al~ 191 (276)
.+|..-.+++.++++.-+.|+.+--+|+.+..+++ .+........... .. .+.+ .....+-+.++.+-++...-++
T Consensus 124 ~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~K 203 (244)
T PF04142_consen 124 FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLK 203 (244)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHH
Confidence 45555678899999977667777778877655443 3332221111111 00 1111 1123344457777777778899
Q ss_pred ccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHH
Q 038906 192 TVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLV 230 (276)
Q Consensus 192 ~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~ 230 (276)
|.+.=.-....+.+-+.+.+++.++++.+++..-.++..
T Consensus 204 yadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 204 YADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 987666677778999999999999999999988876643
No 77
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.42 E-value=3.5 Score=37.80 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhh
Q 038906 168 QFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVAL 238 (276)
Q Consensus 168 ~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~L 238 (276)
.+..+..++++.++|..+-.....+...-.-.++..+--+|+++.+.++++..++.++|++.+++..|...
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 46677788888888888877777665555555777778899999999999999999999999999888665
No 78
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=82.79 E-value=16 Score=29.20 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccC
Q 038906 145 CGSVMIILMWTLNLYTRPKLT-RSQFAVILPLAVA-DTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKP 221 (276)
Q Consensus 145 v~~l~l~l~~~~~~~~~~~~s-~~~~~~~lplgl~-~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~ 221 (276)
++-+++.+.|..+++.+...+ +..+..--.++++ |++..-.+-.+.+..+.+---++. ..+-..-+.++.+++||++
T Consensus 9 ~SN~FMTfAWYGHLK~~~~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l 88 (108)
T PF04342_consen 9 LSNIFMTFAWYGHLKFKSSKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPL 88 (108)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCc
Confidence 344556677765553322111 1111112234444 555555555555553333221222 2222233456778899999
Q ss_pred ChhhHHHHHHHHHhhhhh
Q 038906 222 TIWLVPSLVPIVGGVALA 239 (276)
Q Consensus 222 s~~~~lsl~liv~GV~La 239 (276)
++....+.+.++++|.++
T Consensus 89 ~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 89 KWNYLWAFLCILGAVYFI 106 (108)
T ss_pred cHHHHHHHHHHHHhhhee
Confidence 999999999988887654
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.34 E-value=35 Score=28.90 Aligned_cols=114 Identities=12% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---hHHHHHHH--HHHHHHHHHHHHHHHHHhccchh
Q 038906 122 NIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYTRPKLT---RSQFAVIL--PLAVADTLGNLLTNISLGTVNVS 196 (276)
Q Consensus 122 ~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~~~~~s---~~~~~~~l--plgl~~~~~~~l~n~al~~vsvs 196 (276)
+-.|-.+-.....|..-.++-+.+++.++.+.... ..+++... +..|..+. .+|.+|.+... .....+.+.
T Consensus 21 ~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~---~l~p~lGa~ 96 (150)
T COG3238 21 AAINGRLARYLGSPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWIGGLLGAIFVTSSI---LLAPRLGAA 96 (150)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHHccchhhhhhhhhH---HhccchhHH
Confidence 34555555555669999999999988776554444 33444333 12333322 34444433332 333444443
Q ss_pred hhh-hhccchHHHHHHHHHHHh----cccCChhhHHHHHHHHHhhhhh
Q 038906 197 FTH-TIKAMEPFFTVLFAALFL----REKPTIWLVPSLVPIVGGVALA 239 (276)
Q Consensus 197 ~~~-~ika~~Pvftvils~l~l----~er~s~~~~lsl~liv~GV~La 239 (276)
.++ .+-+..-+.-+++..+=. +++++..++++++++++|+.++
T Consensus 97 ~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 97 TTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 333 333444444455543322 4779999999999999996554
No 80
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.84 E-value=38 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhhhhh
Q 038906 210 VLFAALFLREKPTIWLVPSLVPIVGGVALA 239 (276)
Q Consensus 210 vils~l~l~er~s~~~~lsl~liv~GV~La 239 (276)
+.++.+.++|.+.+..+.+.+++..|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999998888765
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=70.90 E-value=3.6 Score=37.84 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHH
Q 038906 167 SQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPS 228 (276)
Q Consensus 167 ~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~ls 228 (276)
++...-+..|+.++.++.+...|-+.+.++..-.+..+.-+...+...+|+|||=+.+++..
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~ 268 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY 268 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh
Confidence 33334456789999999999999998888887777888888888999999999999888654
No 82
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=70.39 E-value=1e+02 Score=29.57 Aligned_cols=123 Identities=9% Similarity=0.094 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHH-HHHHHHH-HHhhhcCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038906 118 NIYFNIFNKQVLKVFPYPTTVTAFQFGCG-SVMIILM-WTLNLYTRP--KLTRSQFAVILPLAVADTLGNLLTNISLGTV 193 (276)
Q Consensus 118 s~~~~i~nK~iL~~f~~P~~Lt~~q~~v~-~l~l~l~-~~~~~~~~~--~~s~~~~~~~lplgl~~~~~~~l~n~al~~v 193 (276)
|..-.++..++++.=+-+..+-=+|+-+- .++.++. +.....+.. .+=.-+-..+..+-+.++.+-++...-++|.
T Consensus 195 SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyA 274 (345)
T KOG2234|consen 195 SGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYA 274 (345)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchhHHHHHHHh
Confidence 33355678888876555777766776663 3433332 222111111 0000011223344445666666666677777
Q ss_pred chhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 194 NVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 194 svs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
.-=+-...-+.+.+++.+.+..+++.+++..-.++..+++.-+.+..
T Consensus 275 DnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 275 DNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 54444444467889999999999999999988888888777776654
No 83
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=69.29 E-value=62 Score=29.67 Aligned_cols=121 Identities=8% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHH--hhcCCchHHHHHHHHHHHHHHHHHH-HHhhhcCC----CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 038906 116 LLNIYFNIFNKQV--LKVFPYPTTVTAFQFGCGSVMIILM-WTLNLYTR----PKLTRSQFAVILPLAVADTLGNLLTNI 188 (276)
Q Consensus 116 ~~s~~~~i~nK~i--L~~f~~P~~Lt~~q~~v~~l~l~l~-~~~~~~~~----~~~s~~~~~~~lplgl~~~~~~~l~n~ 188 (276)
..+..+.+..|.. +++|..-- -.+..-+.+..+++.+ ....-+.. ..++.+....+..-|++-.+-..++-|
T Consensus 165 lssaafVL~mrkri~ltNf~d~d-tmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saW 243 (309)
T COG5070 165 LSSAAFVLIMRKRIKLTNFKDFD-TMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAW 243 (309)
T ss_pred HhHHHHHHHHHHhhcccccchhh-HHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccce
Confidence 3444455545554 34554222 2244555555444332 22221111 123344555667777777777788889
Q ss_pred HHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhh
Q 038906 189 SLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVA 237 (276)
Q Consensus 189 al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~ 237 (276)
.+.-.+...+.|.-++.-...++.+.++++|..+.....++++..+..+
T Consensus 244 cvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~ 292 (309)
T COG5070 244 CVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGA 292 (309)
T ss_pred eEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888776554433
No 84
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=64.91 E-value=1.1e+02 Score=29.45 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhc-------ccCChhhHHHHHHHHHhhh
Q 038906 166 RSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLR-------EKPTIWLVPSLVPIVGGVA 237 (276)
Q Consensus 166 ~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~-------er~s~~~~lsl~liv~GV~ 237 (276)
.+.+......|++...+.+..-.+..|+.+|+.+-|- .+.-++=.++--++.+ .+-....++++++.++|++
T Consensus 70 ~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa 149 (344)
T PF06379_consen 70 ASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA 149 (344)
T ss_pred hhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence 3456667788888888888888899999888876443 3333333333333333 2334567899999999999
Q ss_pred hhcc----cc-------cccc-HHHHHHHHHHHHHHHHHHHHH
Q 038906 238 LASL----TE-------ASFN-WTGFCSAMASNVTNQSRNVFS 268 (276)
Q Consensus 238 La~~----~e-------~~f~-~~G~l~alls~i~~al~~V~~ 268 (276)
+... +| .+|| -.|.+.++++.+..+..|+-.
T Consensus 150 i~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 150 ICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred HHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8763 12 1344 479999999999888887643
No 85
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=62.28 E-value=13 Score=29.83 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhh-hhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 170 AVILPLAVADTLGNLLTNISLGTVNVSFTH-TIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 170 ~~~lplgl~~~~~~~l~n~al~~vsvs~~~-~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
...+|..+=++ +..+..+-++..|.+.+. +-.+++-.|+.+....+..|.......++..++++|+.++.
T Consensus 54 ~Y~iPFllNqc-gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLLNQC-GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHh-hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 34456554443 445566678888877765 44567888899999888888888888999999999988764
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.88 E-value=90 Score=29.61 Aligned_cols=71 Identities=20% Similarity=0.050 Sum_probs=52.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 171 VILPLAVADT-LGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 171 ~~lplgl~~~-~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
..+.++.+.. .-..++.+.....|+-.+.+.-...-..+.+...++++++.++....++.+.++|-++..+
T Consensus 229 ~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 229 VVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 3344444443 3467778888888888888877777777888888888888999888888888888776543
No 87
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=58.66 E-value=31 Score=28.41 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHHHH
Q 038906 103 QTLQLGGMFGLWYLLNIYFNIFNKQVLKVF-PYPTTVTAF 141 (276)
Q Consensus 103 ~~l~~~~~~~~w~~~s~~~~i~nK~iL~~f-~~P~~Lt~~ 141 (276)
+.+.++++.+++.+++..-.++-|..+..+ +||++++-+
T Consensus 54 e~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~Ql 93 (130)
T PF08627_consen 54 ENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQL 93 (130)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHh
Confidence 457788888887777776778888888876 589888755
No 88
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=51.70 E-value=11 Score=34.75 Aligned_cols=84 Identities=25% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cchHHHHHHHHHHHhcccCChhh----HHHHHHHHH
Q 038906 160 TRPKLTRSQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIK-AMEPFFTVLFAALFLREKPTIWL----VPSLVPIVG 234 (276)
Q Consensus 160 ~~~~~s~~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ik-a~~Pvftvils~l~l~er~s~~~----~lsl~liv~ 234 (276)
..|..+...+.--+.-|++..++......|++++.+|-+.=+. .+.-+-+.+++.+.++|..+..+ ..++++++.
T Consensus 50 ~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAlilivi 129 (288)
T COG4975 50 VSPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVI 129 (288)
T ss_pred ecCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHH
Confidence 4466676666666677788899999999999999988875443 45667788889999999988776 468899999
Q ss_pred hhhhhcccc
Q 038906 235 GVALASLTE 243 (276)
Q Consensus 235 GV~La~~~e 243 (276)
|+.+.++.|
T Consensus 130 G~~lTs~~~ 138 (288)
T COG4975 130 GIYLTSKQD 138 (288)
T ss_pred hheEeeeec
Confidence 999998754
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=45.69 E-value=3.1e+02 Score=26.99 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccc
Q 038906 188 ISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLT 242 (276)
Q Consensus 188 ~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~ 242 (276)
+|....+.-.+++-.+.+....+++..++-++.+++..+++..++.+|-+++...
T Consensus 337 ~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 337 KAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 3444455445555556677778888889999999999999999999998888654
No 90
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.12 E-value=2.1e+02 Score=27.13 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=37.5
Q ss_pred hhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc
Q 038906 196 SFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE 243 (276)
Q Consensus 196 s~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e 243 (276)
..+.++...---.|.+++++++.+.++..-.-+.++++.|+.+=.+.+
T Consensus 287 ~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 287 LIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 333444444445788999999999999999999999999999977654
No 91
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.81 E-value=2.9e+02 Score=23.00 Aligned_cols=64 Identities=25% Similarity=0.218 Sum_probs=36.3
Q ss_pred chhhhhhhccchHHHHHHH-HHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHH
Q 038906 194 NVSFTHTIKAMEPFFTVLF-AALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMAS 257 (276)
Q Consensus 194 svs~~~~ika~~Pvftvil-s~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls 257 (276)
|+-.-.+-|-.+|..-.-. +++=+...++....++.+++.+|+.++.-.....+..|++..+++
T Consensus 41 PlivW~~kK~~sp~vD~qGKe~lNFqIs~ti~~ivs~vLil~g~~la~t~~~~i~~ig~~l~li~ 105 (143)
T COG3296 41 PLIVWLLKKDSSPFVDAQGKEALNFQISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIG 105 (143)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 5555556665566554332 122233334455568899999999988654433455666554433
No 92
>PTZ00358 hypothetical protein; Provisional
Probab=32.20 E-value=4.7e+02 Score=25.26 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCChHHHHHHHHHHHHHHH
Q 038906 105 LQLGGMFGLWYLLN-IYFNIFNKQVLKVFPYPTTVTAFQFGCGSVMIILMWTLNLYT--RPKLTRSQFAVILPLAVADTL 181 (276)
Q Consensus 105 l~~~~~~~~w~~~s-~~~~i~nK~iL~~f~~P~~Lt~~q~~v~~l~l~l~~~~~~~~--~~~~s~~~~~~~lplgl~~~~ 181 (276)
...+.++++|...- -..+.+.+.+ ++++....+...+-+-..+.....|..+.-. ..+++|-+|..+..+.+++..
T Consensus 6 cttivlvllwL~lccqalg~l~~li-~~~~~~~v~~ttttlst~ll~vcLwqCkkagYLvsPmTwyHW~llvlLvllqv~ 84 (367)
T PTZ00358 6 CTTIVLVLLWLYLCCQALGSLVALI-DEYSTTPVLPTTTTLSTVLLGVCLWQCKKAGYLVSPMTWYHWVLLVLLVLLQVV 84 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhccCceeeehhhHHHHHHHHHHHHHhcccCeecCCchHHHHHHHHHHHHHHHH
Confidence 44556667776432 2233333333 3333222222222222222223345432211 235789899888899999998
Q ss_pred HHHHHHHHHhccchhhhhhhccchHHHHH
Q 038906 182 GNLLTNISLGTVNVSFTHTIKAMEPFFTV 210 (276)
Q Consensus 182 ~~~l~n~al~~vsvs~~~~ika~~Pvftv 210 (276)
...+.....+-. .+-..-++++.|+.-+
T Consensus 85 avv~e~~~~~~~-~~~~~~~~~~ypIYgi 112 (367)
T PTZ00358 85 AVVLEYLELQGW-LSVSLGIKWTYPIYGI 112 (367)
T ss_pred HHHHHHhhhcch-hhhhhcCCcCCchHHH
Confidence 888876665544 5555667777887643
No 93
>COG2510 Predicted membrane protein [Function unknown]
Probab=24.01 E-value=3e+02 Score=23.02 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcc
Q 038906 174 PLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLRE 219 (276)
Q Consensus 174 plgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~e 219 (276)
.-+++..++-++.-.+++.++..+++++++..-+..+..-.+..|+
T Consensus 10 LsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~ 55 (140)
T COG2510 10 LSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGN 55 (140)
T ss_pred HHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444567788899999999999999999987666665555555543
No 94
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.33 E-value=1.1e+02 Score=24.06 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 205 EPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 205 ~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
.|++.-++.-..+.|++....+..+.++++|+++.+.
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 5777777777778888877767777788888776653
No 95
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=23.27 E-value=94 Score=25.96 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 038906 244 ASFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 276 (276)
Q Consensus 244 ~~f~~~G~l~alls~i~~al~~V~~Kkll~~k~ 276 (276)
.+-|.+|.++.-+=.+.|++|.++.|.+=+++|
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~eded 133 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDEDED 133 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCCCcc
Confidence 345789999988889999999999998765554
No 96
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=22.23 E-value=1.8e+02 Score=27.47 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038906 226 VPSLVPIVGGVALASLTEASFNWTGFCSAMASNVTNQSRNVFSKKFMV 273 (276)
Q Consensus 226 ~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~~al~~V~~Kkll~ 273 (276)
-.++++++.|..++.+....|+++=.++.+++++......-+..-.++
T Consensus 21 ~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D 68 (303)
T COG1575 21 PAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFD 68 (303)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 459999999999998877688888888888877766555444444443
No 97
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.61 E-value=5.6e+02 Score=22.18 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=31.3
Q ss_pred cccCChhhHHHHHHHHHhhhhhccc-------cccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038906 218 REKPTIWLVPSLVPIVGGVALASLT-------EASFNWTGFCSAMASNVTNQSRNVFSKKFM 272 (276)
Q Consensus 218 ~er~s~~~~lsl~liv~GV~La~~~-------e~~f~~~G~l~alls~i~~al~~V~~Kkll 272 (276)
++|.+..+++.+..+...+.+.... ..+..+-+....+++.++++++..+-||.-
T Consensus 141 ~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 141 KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555555555444443333332221 112234466777888999999988887753
Done!