Query 038906
Match_columns 276
No_of_seqs 187 out of 1370
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 4.2E-06 1.4E-10 65.7 11.2 70 174-243 35-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 3.5E-06 1.2E-10 68.9 8.5 66 176-241 37-103 (137)
3 2kv5_A FST, putative uncharact 4.8 3.3E+02 0.011 16.3 1.4 13 228-240 8-20 (33)
4 3b9w_A Ammonium transporter fa 4.7 1.8E+03 0.062 20.2 10.8 53 207-260 220-272 (407)
5 3hd6_A Ammonium transporter RH 4.4 2E+03 0.07 20.5 10.4 52 207-259 267-320 (490)
6 4dve_A Biotin transporter BIOY 4.0 1.5E+03 0.053 18.4 7.7 72 167-240 15-86 (198)
7 2zt9_E Cytochrome B6-F complex 3.9 7.4E+02 0.025 14.5 2.7 19 248-266 10-28 (31)
8 1zv1_A Doublesex protein; UBA 3.8 4.4E+02 0.015 18.1 1.6 14 126-139 14-27 (65)
9 2nr1_A NR1 M2, M2; receptor, s 3.0 8.8E+02 0.03 13.7 3.1 13 110-122 10-22 (27)
10 2jz1_A Protein doublesex; sex 2.9 5.9E+02 0.02 18.2 1.6 14 126-139 14-27 (80)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.36 E-value=4.2e-06 Score=65.68 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhh-ccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcccc
Q 038906 174 PLAVADTLGNLLTNISLGTVNVSFTHTI-KAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTE 243 (276)
Q Consensus 174 plgl~~~~~~~l~n~al~~vsvs~~~~i-ka~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e 243 (276)
...+++..+..+.+.+++++|++.+..+ .++.|+++++++.++++|++++.+++++++++.|+.+....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3334578888899999999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.24 E-value=3.5e-06 Score=68.88 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhh-ccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhcc
Q 038906 176 AVADTLGNLLTNISLGTVNVSFTHTI-KAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALASL 241 (276)
Q Consensus 176 gl~~~~~~~l~n~al~~vsvs~~~~i-ka~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~~ 241 (276)
.+++.++..+.+.+++++|++.+..+ .++.|+++++++.++++|++++.++++++++++|+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34578889999999999999999888 8999999999999999999999999999999999999864
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.76 E-value=3.3e+02 Score=16.31 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhc
Q 038906 228 SLVPIVGGVALAS 240 (276)
Q Consensus 228 sl~liv~GV~La~ 240 (276)
-++|++.|+++.-
T Consensus 8 IIaPivVGvvl~L 20 (33)
T 2kv5_A 8 VIAPIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888888764
No 4
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=4.67 E-value=1.8e+03 Score=20.20 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHH
Q 038906 207 FFTVLFAALFLREKPTIWLVPSLVPIVGGVALASLTEASFNWTGFCSAMASNVT 260 (276)
Q Consensus 207 vftvils~l~l~er~s~~~~lsl~liv~GV~La~~~e~~f~~~G~l~alls~i~ 260 (276)
+..+++++++.+.|++....+. ..+..+|.+....+.--.+..+++.+++.+.
T Consensus 220 l~~~~~~~~~~~gK~~~~~~~n-G~LAGLVAITa~~~~v~p~~A~iIG~iaG~i 272 (407)
T 3b9w_A 220 LATYFLSALFHKGKASIVDMAN-AALAGGVAIGSVCNIVGPVGAFVIGLLGGAI 272 (407)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHH-HTTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHH-hhhhhhheeccCCCCCCHHHHHHHHHHHHHH
Confidence 3344455554556777654432 3344445554443432234444444444443
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=4.41 E-value=2e+03 Score=20.45 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=22.8
Q ss_pred HHHHHHHHHH-hcccCChhhHHHHHHHHHhhhhhccccc-cccHHHHHHHHHHHH
Q 038906 207 FFTVLFAALF-LREKPTIWLVPSLVPIVGGVALASLTEA-SFNWTGFCSAMASNV 259 (276)
Q Consensus 207 vftvils~l~-l~er~s~~~~lsl~liv~GV~La~~~e~-~f~~~G~l~alls~i 259 (276)
+..+++++++ .+.|++....+. ..+..+|.+....+. --.+..++..+++.+
T Consensus 267 lt~~~~s~l~~~~gK~s~~~~~n-G~LAGLVAIT~~a~~~v~P~~AliIG~iaG~ 320 (490)
T 3hd6_A 267 LTSVAISSALHKKGKLDMVHIQN-ATLAGGVAVGTAAEMMLMPYGALIIGFVCGI 320 (490)
T ss_dssp HHHHHHHHHTSTTCCCCHHHHHH-GGGHHHHHTTTTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHhhh-ceeeeEEEEccCcccccCHHHHHHHHHHHHH
Confidence 3344444443 345666644433 334455555433332 123444444444433
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.00 E-value=1.5e+03 Score=18.41 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHHHHHHHHhhhhhc
Q 038906 167 SQFAVILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPSLVPIVGGVALAS 240 (276)
Q Consensus 167 ~~~~~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~lsl~liv~GV~La~ 240 (276)
+..|.+..++++-++..++... ..+|+++.-+=-.++.+++++.+.++..++=.....+=+++..+|+=+..
T Consensus 15 ~k~r~l~~~alfaAliavla~i--~~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFa 86 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFL--PGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLT 86 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--CCBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCcccc
Confidence 3456666666665554444432 13555555444457777887777776655543344444455555655544
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=3.91 E-value=7.4e+02 Score=14.50 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038906 248 WTGFCSAMASNVTNQSRNV 266 (276)
Q Consensus 248 ~~G~l~alls~i~~al~~V 266 (276)
+.++++++.+.+.++++.+
T Consensus 10 ~l~~~~~iA~GL~fGLrsi 28 (31)
T 2zt9_E 10 FLALFTGIAAGLLFGLRSA 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777654
No 8
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=3.82 E-value=4.4e+02 Score=18.10 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.2
Q ss_pred HHHhhcCCchHHHH
Q 038906 126 KQVLKVFPYPTTVT 139 (276)
Q Consensus 126 K~iL~~f~~P~~Lt 139 (276)
.+++..|+|||.+.
T Consensus 14 ~kLLEkf~YpWEmM 27 (65)
T 1zv1_A 14 QKLLEKFRYPWELM 27 (65)
T ss_dssp HHHHHHTTCCGGGH
T ss_pred HHHHHHhCCCHHHh
Confidence 56788899999874
No 9
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=2.99 E-value=8.8e+02 Score=13.72 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 038906 110 MFGLWYLLNIYFN 122 (276)
Q Consensus 110 ~~~~w~~~s~~~~ 122 (276)
...+|+.+++.++
T Consensus 10 ~aa~wF~WGvlln 22 (27)
T 2nr1_A 10 SSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHhhHhhee
Confidence 4567777776444
No 10
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=2.90 E-value=5.9e+02 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.2
Q ss_pred HHHhhcCCchHHHH
Q 038906 126 KQVLKVFPYPTTVT 139 (276)
Q Consensus 126 K~iL~~f~~P~~Lt 139 (276)
.+++..|+|||.+.
T Consensus 14 ~kLLEkF~YpWEMM 27 (80)
T 2jz1_A 14 QKLLEKFRYPWELM 27 (80)
T ss_dssp HHHHHHTTCCGGGH
T ss_pred HHHHHHhCCCHHHH
Confidence 56778899999874
Done!