Query 038906
Match_columns 276
No_of_seqs 187 out of 1370
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 11.6 3.1E+02 0.023 21.5 7.3 54 171-228 4-57 (248)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 6.5 1.9E+02 0.014 14.8 2.8 18 249-266 3-20 (27)
3 d1d4ba_ d.15.2.1 (A:) Cell dea 4.3 1.6E+02 0.012 21.1 1.6 14 48-61 105-118 (122)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 3.2 9E+02 0.065 18.2 9.1 12 218-229 83-94 (447)
5 d1pn0a3 d.16.1.2 (A:241-341) P 2.6 2.6E+02 0.019 19.0 1.2 16 13-29 19-34 (101)
6 d1uptb_ a.193.1.1 (B:) Golgi a 2.6 2E+02 0.015 17.7 0.6 21 209-229 10-30 (58)
7 d1m1fa_ b.34.6.2 (A:) Kid toxi 2.4 2.4E+02 0.018 18.6 0.8 36 8-43 11-48 (110)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 2.1 6.3E+02 0.046 13.8 2.8 17 248-264 18-34 (37)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 2.0 9.1E+02 0.066 15.3 7.0 16 167-182 72-87 (100)
10 d1kcxa1 b.92.1.3 (A:15-66,A:40 1.9 4.1E+02 0.03 18.8 1.6 25 23-47 50-74 (142)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=11.57 E-value=3.1e+02 Score=21.55 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhccchHHHHHHHHHHHhcccCChhhHHH
Q 038906 171 VILPLAVADTLGNLLTNISLGTVNVSFTHTIKAMEPFFTVLFAALFLREKPTIWLVPS 228 (276)
Q Consensus 171 ~~lplgl~~~~~~~l~n~al~~vsvs~~~~ika~~Pvftvils~l~l~er~s~~~~ls 228 (276)
+++.+|++.++..+.....+..-+..+.. ..-+.++++.++++.+|.-+.+|+-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45677887777766666666666555443 3445667777888888888888854
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.53 E-value=1.9e+02 Score=14.80 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038906 249 TGFCSAMASNVTNQSRNV 266 (276)
Q Consensus 249 ~G~l~alls~i~~al~~V 266 (276)
+|.+++-++.++++.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777778888877654
No 3
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.35 E-value=1.6e+02 Score=21.05 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=10.7
Q ss_pred CCCcccCCCCCCcc
Q 038906 48 FGSFTPRDGNGVGW 61 (276)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (276)
+++|+|.+.+.+.+
T Consensus 105 gqkW~P~~~~~~~~ 118 (122)
T d1d4ba_ 105 GQSWSPTRSGVLHH 118 (122)
T ss_dssp SCCCCCCCCSCCTT
T ss_pred CCccCCCcCcceee
Confidence 78899997776653
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.22 E-value=9e+02 Score=18.17 Aligned_cols=12 Identities=0% Similarity=0.022 Sum_probs=6.1
Q ss_pred cccCChhhHHHH
Q 038906 218 REKPTIWLVPSL 229 (276)
Q Consensus 218 ~er~s~~~~lsl 229 (276)
.+|+.++..+.+
T Consensus 83 ~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 83 SDRSNPRVFLPA 94 (447)
T ss_dssp HHHSCHHHHHHH
T ss_pred HHHcCchHHHHH
Confidence 355655554433
No 5
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=2.59 E-value=2.6e+02 Score=19.00 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=11.0
Q ss_pred ccchhhhheeeecCCCC
Q 038906 13 TPILKRRFCLILSSSSL 29 (276)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (276)
=||.|+ .|.|-|+..|
T Consensus 19 FPDiR~-~~~I~S~~~G 34 (101)
T d1pn0a3 19 FPDIRS-RCAIHSAESG 34 (101)
T ss_dssp CTTTTS-EEEEECSSSC
T ss_pred CCCCce-EEEEEeCCCC
Confidence 467755 7999886543
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.57 E-value=2e+02 Score=17.74 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=14.5
Q ss_pred HHHHHHHHhcccCChhhHHHH
Q 038906 209 TVLFAALFLREKPTIWLVPSL 229 (276)
Q Consensus 209 tvils~l~l~er~s~~~~lsl 229 (276)
.+++.++.++|..+..+.++.
T Consensus 10 nvLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 10 KVLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCcchhHHHHHHHH
Confidence 356777778887777776553
No 7
>d1m1fa_ b.34.6.2 (A:) Kid toxin protein (ParD) {Plasmid R1, from Escherichia coli [TaxId: 2482]}
Probab=2.37 E-value=2.4e+02 Score=18.57 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=19.4
Q ss_pred cccCCccc-hhhhheeeecCCCCcc-chhhcccCCccc
Q 038906 8 LAPASTPI-LKRRFCLILSSSSLEP-ADLAFSRGVSCL 43 (276)
Q Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 43 (276)
+.|..+.+ -|+|-|+++|.-...+ .+.+.=-|.+.+
T Consensus 11 ~~p~~g~E~~k~RP~vVvs~~~~n~~~~~viv~piTs~ 48 (110)
T d1m1fa_ 11 LDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSG 48 (110)
T ss_dssp CCSCCTTSCCSEEEEEECSCHHHHHHHSCCEEEEEEC-
T ss_pred CCCCCCcccCCcccEEEEEcCccCccCCeEEEEEeccC
Confidence 34544433 6789999999754322 233433355443
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.10 E-value=6.3e+02 Score=13.75 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038906 248 WTGFCSAMASNVTNQSR 264 (276)
Q Consensus 248 ~~G~l~alls~i~~al~ 264 (276)
.+|.++++.-++.++.|
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666665555554443
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.97 E-value=9.1e+02 Score=15.28 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 038906 167 SQFAVILPLAVADTLG 182 (276)
Q Consensus 167 ~~~~~~lplgl~~~~~ 182 (276)
+..++++|+-++-.++
T Consensus 72 EiiWTviP~lILi~l~ 87 (100)
T d3dtub2 72 EIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777776664443
No 10
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.94 E-value=4.1e+02 Score=18.75 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=20.5
Q ss_pred eecCCCCccchhhcccCCcccccCC
Q 038906 23 ILSSSSLEPADLAFSRGVSCLQTSR 47 (276)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (276)
++.+..+..+|++.-.|+..|.-+.
T Consensus 50 ~v~~~~G~dAdl~i~Dp~~~~~i~~ 74 (142)
T d1kcxa1 50 MVIIAVGSDADVVIWDPDKMKTITA 74 (142)
T ss_dssp EEECCTTSBCCEEEEEEEEEEECCT
T ss_pred ceeecccccceEEEEeccceEEEcc
Confidence 4567889999999999999987444
Done!