BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038912
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G9H|A Chain A, Crystal Structure Of The C-Terminal Mu Homology Domain Of
Syp1
Length = 328
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 27 LDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLE 71
++ L G++ ++ N F+K +L QA IE++ + N SF++
Sbjct: 106 MNSPLPIGINLRINNGAKFEKVILNQAFIERVAPEEFKVNPSFID 150
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 17 EILARVGACSLDD-------LLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSF 69
E A G S+DD +LN S KLFN+ Y + S+ +P P H +Y
Sbjct: 243 ETFATTGKGSIDDRPPCSHFVLNTYKSRKLFNKDLIKVYEFVKDSLGTLPFSPRHLDYYG 302
Query: 70 LEK 72
L K
Sbjct: 303 LVK 305
>pdb|3EHN|A Chain A, Bt1043 With N-Acetyllactosamine
pdb|3EHN|B Chain B, Bt1043 With N-Acetyllactosamine
Length = 532
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK-SGHLGASYILGV------IFLCKDDED 129
G+P+ Y+QG+ F + YL K +G G++Y G I D
Sbjct: 362 GDPKTFYEQGINISFQEQGVSGVATYLSGTGKPTGLTGSNYKYGTYNHDLSIGNTSPKWD 421
Query: 130 DDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKN--YYLKPKLNKCPSR 181
D + K + L K+ K L+ N +++ T+ Y +KP P R
Sbjct: 422 DYTGNLSKQEEQLQKIITQKYLALYPNAVEAWTEYRRTGFPYLMKPMDEAAPGR 475
>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2
pdb|3CEY|B Chain B, Crystal Structure Of L3mbtl2
Length = 474
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 166 WKNYYLKPKLNKCPSR------KNHGLKVGWPCEVDDI 197
W+NY K K PSR NHG KVG E D+
Sbjct: 359 WENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDL 396
>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex
pdb|3F70|B Chain B, Crystal Structure Of L3mbtl2-H4k20me1 Complex
Length = 456
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 166 WKNYYLKPKLNKCPSR------KNHGLKVGWPCEVDDI 197
W+NY K K PSR NHG KVG E D+
Sbjct: 341 WENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDL 378
>pdb|2PLC|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 274
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 33/133 (24%)
Query: 93 YSNLEAGVAYLDIATKSG--------HLGASYILGVI-----FLCKD----------DED 129
Y LEAG+ Y+DI K L AS + GV+ FL K+ DE
Sbjct: 51 YQQLEAGIRYIDIRAKDNLNIYHGPIFLNAS-LSGVLETITQFLKKNPKETIIMRLKDEQ 109
Query: 130 DDNESNQKGMQHLDKVYRAKRLSQCR----NKLQSITQTLWKNYYLKPKLNKCP----SR 181
+ N+S +Q L +Y+ + R NK+ ++ K L K P SR
Sbjct: 110 NSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSR 169
Query: 182 KNHGLKVGWPCEV 194
K G++ G P +V
Sbjct: 170 K-FGMQFGAPNQV 181
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 134 SNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKN 168
SN + ++ L++ YR R C +L +I WKN
Sbjct: 217 SNPEVIRALERGYRMPRPENCPEELYNIMMRCWKN 251
>pdb|3EHM|A Chain A, Structure Of Bt1043
pdb|3EHM|B Chain B, Structure Of Bt1043
Length = 532
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK-SGHLGASYILGV------IFLCKDDED 129
G+P+ Y+QG+ F + YL K +G G++Y G I D
Sbjct: 362 GDPKTFYEQGINISFQEQGVSGVATYLSGTGKPTGLTGSNYKYGTYNHDLSIGNTSPKWD 421
Query: 130 DDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKN--YYLKPKLNKCPSR 181
D + K + L K+ K L+ N +++ T+ Y KP P R
Sbjct: 422 DYTGNLSKQEEQLQKIITQKYLALYPNAVEAWTEYRRTGFPYLXKPXDEAAPGR 475
>pdb|1AOD|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 289
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 33/133 (24%)
Query: 93 YSNLEAGVAYLDIATKSG--------HLGASYILGVI-----FLCKD----------DED 129
Y LEAG+ Y+DI K L AS + GV+ FL K+ DE
Sbjct: 65 YQQLEAGIRYIDIRAKDNLNIYHGPIFLNAS-LSGVLETITQFLKKNPKETIIMRLKDEQ 123
Query: 130 DDNESNQKGMQHLDKVYRAKRLSQCR----NKLQSITQTLWKNYYLKPKLNKCP----SR 181
+ N+S +Q L +Y+ + R NK+ ++ K L K P SR
Sbjct: 124 NSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSR 183
Query: 182 KNHGLKVGWPCEV 194
K G++ G P +V
Sbjct: 184 K-FGMQFGAPNQV 195
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 134 SNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKN 168
SN + ++ L++ YR R C +L +I WKN
Sbjct: 390 SNPEVIRALERGYRMPRPENCPEELYNIMMRCWKN 424
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 134 SNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKN 168
SN + ++ L++ YR R C +L +I WKN
Sbjct: 374 SNPEVIRALERGYRMPRPENCPEELYNIMMRCWKN 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,999,867
Number of Sequences: 62578
Number of extensions: 241101
Number of successful extensions: 554
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 13
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)