BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038912
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXC7|FB79_ARATH Putative F-box protein At1g67623 OS=Arabidopsis thaliana
GN=At1g67623 PE=4 SV=1
Length = 296
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 9 SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
SLP++LL EI + GA SL + N L K F I +KYV + S+++I +PWH+N +
Sbjct: 26 SLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSA 85
Query: 69 -FLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDD 127
F+E+C +S NPEAL+++G + +F + G+ YL A + G A Y+ GVI +C
Sbjct: 86 KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICL-- 143
Query: 128 EDDDNESNQKGMQHLDKVYR------AKRLSQCRNKLQSITQTLW 166
++ QKG + L V + L + R K+Q I W
Sbjct: 144 ---GGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFW 185
>sp|Q1PEW8|FB127_ARATH F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2
SV=1
Length = 163
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 9 SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPW--HKN 66
+LP +LL EI+A++G S +D N LSCK D+ VL+ ++ + P K+
Sbjct: 13 ALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCRKH 72
Query: 67 YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKD 126
++KC + NP+A Y +G++ +F+ + + + ++ IA G A Y+ ++ LC+
Sbjct: 73 LLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAMLLLCRG 132
Query: 127 DEDD 130
++
Sbjct: 133 RTEE 136
>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1
SV=1
Length = 379
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 9 SLPDELLSEILARVGACSL--DDLLNAGLSCKLFNEITFDKYVLRQASIEKIP--AMPWH 64
S+PD+L+ IL ++G+ S D +N L+CK + + VL + S + I A W
Sbjct: 46 SIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWS 105
Query: 65 K-NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
+ ++ FL++C D+G+ EA Y G++ F+ N G + + A S H A Y L VI
Sbjct: 106 EYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVI 163
>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2
SV=1
Length = 336
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 10 LPDELLSEILARVG--ACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK--IPAMPWH- 64
L D+L+ IL ++ A S D L +CK N + VL +A + + A W
Sbjct: 25 LHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEKWSD 84
Query: 65 KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
++ FL+ C ++GN +A Y G++ F+ N +G + + A H A Y L VI
Sbjct: 85 SSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141
>sp|Q9SN20|FB200_ARATH Putative F-box protein At3g49980 OS=Arabidopsis thaliana
GN=At3g49980 PE=4 SV=1
Length = 382
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 7 IFSLPDELLSEILARVGACSLDDLLNAGLSCK----LFNEITFDK 47
+ +LP ELL EIL RV A SL L L+CK LFN+ TF +
Sbjct: 2 VLNLPQELLEEILCRVPATSLKQL---RLTCKEWNRLFNDRTFSR 43
>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana
GN=At3g61590 PE=1 SV=1
Length = 411
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH 64
LPD+LL IL+ + S+ AG CK +NEI + L S + PW+
Sbjct: 43 LPDDLLERILSFLPIASI---FRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWY 94
>sp|A0AIB8|DXR_LISW6 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Listeria
welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 /
SLCC5334) GN=dxr PE=3 SV=1
Length = 380
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 12 DELLSEILARVGACSLDDLLNAGLSCKLFNE---ITFDKYVLRQASIEKIPAMPWHKNYS 68
D LL+ ++ VG D + AG S + N+ +T V+R A + I +P +S
Sbjct: 91 DVLLNAVMGSVGLLPTLDAIEAGKSIAIANKETLVTAGHIVMRAAREKNISLLPVDSEHS 150
Query: 69 FLEKCRDSGNPEALYK 84
+ + + NPE + K
Sbjct: 151 AILQALNGENPERIEK 166
>sp|Q9FIH1|FB281_ARATH F-box protein At5g42460 OS=Arabidopsis thaliana GN=At5g42460 PE=2
SV=2
Length = 388
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIE 56
LP +LL+EIL+RV SL + L+CK +N+++ D+ L++ +E
Sbjct: 7 LPRDLLAEILSRVPLTSLRAV---RLTCKKWNDLSKDRSFLKKQIVE 50
>sp|Q04922|MFB1_YEAST Mitochondrial F-box protein MFB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MFB1 PE=1 SV=1
Length = 465
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 5 RSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH 64
RS+ +LP LL IL+ + ++DL N G +C L + + V R A I M W
Sbjct: 15 RSLTNLPLNLLFRILSHLD---MNDLQNIGKTCTLLRMLANENIVYRNAVIGSNGNMWWT 71
Query: 65 KN 66
KN
Sbjct: 72 KN 73
>sp|Q9LSV6|FB186_ARATH Putative F-box protein At3g25460 OS=Arabidopsis thaliana
GN=At3g25460 PE=4 SV=1
Length = 361
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDK 47
LP++LL EIL RV A SL L + +CKL+N + DK
Sbjct: 6 LPEDLLVEILCRVPATSLKRLRS---TCKLWNHLYNDK 40
>sp|O34352|YEEC_BACSU Uncharacterized protein YeeC OS=Bacillus subtilis (strain 168)
GN=yeeC PE=4 SV=2
Length = 382
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 13 ELLSEILARVGACSLDDLLNAGLSC----KLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
E+ S+ L S+DD+L +GLS L N+IT + + +S++K+ MP + +
Sbjct: 93 EVRSKELTIPKISSIDDILKSGLSALLGDNLNNDIT--RSIFDTSSLQKVTTMPEY--VA 148
Query: 69 FLEKCRDSGNPEALYKQ 85
+K +D G E L+K+
Sbjct: 149 KRKKIKDFGKFEELFKK 165
>sp|Q84X17|FB112_ARATH F-box protein At2g17830 OS=Arabidopsis thaliana GN=At2g17830 PE=2
SV=2
Length = 394
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIE 56
LP +LL+EIL+RV SL + +CK +N+++ D+ L++ +E
Sbjct: 7 LPRDLLAEILSRVPLASLR---SVRFTCKKWNDLSKDRSFLKKQIVE 50
>sp|Q66HD2|KLH36_RAT Kelch-like protein 36 OS=Rattus norvegicus GN=Klhl36 PE=2 SV=1
Length = 613
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 85 QGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDK 144
+ VV+F S LE + +D ++ HL + + V F C+ E + +E N +Q L
Sbjct: 97 KAVVDFLYSSELELDGSNIDYILETAHLLQIWTV-VDFCCEYLEQEVSEDNYLYLQELAS 155
Query: 145 VYRAKRL 151
+Y KRL
Sbjct: 156 IYSLKRL 162
>sp|Q8R124|KLH36_MOUSE Kelch-like protein 36 OS=Mus musculus GN=Klhl36 PE=2 SV=1
Length = 613
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 85 QGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDK 144
+ VV+F S LE + +D ++ HL + + V F C+ E + +E N +Q L
Sbjct: 97 KAVVDFLYSSELELDGSNIDYILETAHLLQIWTV-VDFCCEYLEQEVSEDNYLYLQELAS 155
Query: 145 VYRAKRL 151
+Y KRL
Sbjct: 156 IYSLKRL 162
>sp|Q921G6|LRCH4_MOUSE Leucine-rich repeat and calponin homology domain-containing protein
4 OS=Mus musculus GN=Lrch4 PE=2 SV=1
Length = 680
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 30 LLNAGLSCKLFNEI---TFDKYVLRQASIEKIPAMPWHKNY-SFLEKCRDSGNPEA---- 81
L N L C+L N++ + + ++ K+ A+ KN SFLE CR G PEA
Sbjct: 561 LANGVLLCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCS 620
Query: 82 ---LYK---QGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL 123
L + QG+ L G A L + SG LG + V+F+
Sbjct: 621 PSDLLRGTAQGLQTVLEAVILVGGKAPLPVQPSSG-LGGFLLFYVVFM 667
>sp|O04591|FBK26_ARATH Putative F-box/kelch-repeat protein At1g62270 OS=Arabidopsis
thaliana GN=At1g62270 PE=4 SV=2
Length = 383
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 3 RTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCK----LFNEITFDKYVLRQA 53
+T S SLP +L+ +ILARV A SL L + +CK LFN+ F K +A
Sbjct: 5 KTSSFSSLPWDLVEDILARVPATSLKRLRS---TCKQWNFLFNDQIFTKMHFDKA 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,102,361
Number of Sequences: 539616
Number of extensions: 3042168
Number of successful extensions: 7978
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7967
Number of HSP's gapped (non-prelim): 22
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)