Query 038912
Match_columns 199
No_of_seqs 95 out of 97
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 97.9 4E-06 1.4E-10 54.6 2.7 47 4-53 6-52 (53)
2 1klx_A Cysteine rich protein B 97.7 0.00021 7.3E-09 53.7 8.9 78 65-146 43-124 (138)
3 3rjv_A Putative SEL1 repeat pr 97.6 0.00024 8.2E-09 56.5 8.0 77 64-146 35-116 (212)
4 3rjv_A Putative SEL1 repeat pr 97.3 0.00041 1.4E-08 55.1 6.4 80 64-147 70-157 (212)
5 1klx_A Cysteine rich protein B 97.2 0.00095 3.3E-08 50.1 7.3 75 66-147 14-89 (138)
6 2e31_A FBS1, F-box only protei 96.7 0.0012 4E-08 58.0 4.5 48 5-55 49-97 (297)
7 3l2o_B F-box only protein 4; s 96.5 0.00095 3.3E-08 59.1 2.3 53 5-60 3-55 (312)
8 3e4b_A ALGK; tetratricopeptide 96.4 0.0069 2.3E-07 53.8 7.3 56 67-123 237-294 (452)
9 2xm6_A Protein corresponding t 96.1 0.016 5.5E-07 51.0 8.2 78 64-145 60-141 (490)
10 3e4b_A ALGK; tetratricopeptide 96.1 0.011 3.9E-07 52.4 7.0 55 68-123 308-365 (452)
11 2ovr_B FBW7, F-BOX/WD repeat p 95.9 0.0071 2.4E-07 52.1 4.6 53 2-57 14-66 (445)
12 3v7d_B Cell division control p 95.7 0.0039 1.3E-07 53.6 2.3 51 2-55 10-61 (464)
13 1ouv_A Conserved hypothetical 95.7 0.04 1.4E-06 43.9 8.1 57 67-123 62-121 (273)
14 1ouv_A Conserved hypothetical 95.7 0.042 1.4E-06 43.8 8.0 79 64-146 23-105 (273)
15 2xm6_A Protein corresponding t 95.6 0.046 1.6E-06 48.1 8.7 77 66-146 26-106 (490)
16 2ast_B S-phase kinase-associat 95.5 0.0063 2.2E-07 50.8 2.6 51 4-57 6-56 (336)
17 1p22_A F-BOX/WD-repeat protein 95.2 0.006 2.1E-07 52.6 1.6 54 1-57 5-62 (435)
18 3bee_A Putative YFRE protein; 93.7 0.24 8.2E-06 35.1 7.1 65 76-147 3-71 (93)
19 3gyz_A Chaperone protein IPGC; 90.9 1.5 5.2E-05 33.1 8.9 92 63-162 52-147 (151)
20 2p1m_B Transport inhibitor res 90.8 0.14 4.9E-06 45.7 3.4 38 4-43 3-40 (594)
21 3ma5_A Tetratricopeptide repea 90.1 2.9 0.0001 28.4 9.1 65 75-147 3-69 (100)
22 3k9i_A BH0479 protein; putativ 89.9 2.1 7.3E-05 29.6 8.4 90 64-161 7-107 (117)
23 2vgx_A Chaperone SYCD; alterna 89.7 3 0.0001 30.7 9.4 76 64-147 38-117 (148)
24 2xcb_A PCRH, regulatory protei 89.3 4.1 0.00014 29.1 9.8 76 64-147 35-114 (142)
25 3q49_B STIP1 homology and U bo 88.9 3.9 0.00013 28.1 9.1 76 64-147 26-105 (137)
26 2kck_A TPR repeat; tetratricop 87.5 2.9 9.8E-05 27.2 7.3 74 65-146 24-104 (112)
27 2xev_A YBGF; tetratricopeptide 87.4 5.1 0.00017 27.2 9.8 75 65-147 20-104 (129)
28 2e2e_A Formate-dependent nitri 86.1 3 0.0001 30.5 7.4 77 64-147 61-143 (177)
29 1hxi_A PEX5, peroxisome target 86.0 1.4 4.7E-05 31.4 5.3 49 77-126 49-99 (121)
30 2kck_A TPR repeat; tetratricop 85.8 3.4 0.00012 26.8 6.9 65 75-147 2-68 (112)
31 2lni_A Stress-induced-phosphop 85.7 4.9 0.00017 27.0 7.9 76 64-147 33-112 (133)
32 1pc2_A Mitochondria fission pr 84.2 5.4 0.00018 31.4 8.4 81 76-163 29-119 (152)
33 4gco_A Protein STI-1; structur 83.9 7.3 0.00025 27.7 8.5 77 63-147 29-109 (126)
34 2kat_A Uncharacterized protein 83.2 4 0.00014 27.8 6.6 72 68-147 6-81 (115)
35 4ga2_A E3 SUMO-protein ligase 82.6 3.5 0.00012 30.2 6.4 64 64-128 48-115 (150)
36 3sz7_A HSC70 cochaperone (SGT) 82.3 11 0.00039 27.1 9.2 76 64-147 28-107 (164)
37 2xev_A YBGF; tetratricopeptide 81.9 6.8 0.00023 26.5 7.4 60 79-146 2-66 (129)
38 2dba_A Smooth muscle cell asso 80.7 11 0.00037 25.8 8.2 76 64-147 45-127 (148)
39 3gyz_A Chaperone protein IPGC; 80.4 3.9 0.00013 30.8 6.1 63 77-147 34-98 (151)
40 1xnf_A Lipoprotein NLPI; TPR, 79.1 7.1 0.00024 29.8 7.3 77 63-147 59-139 (275)
41 3upv_A Heat shock protein STI1 78.9 8.9 0.0003 26.2 7.2 75 64-146 21-99 (126)
42 1na3_A Designed protein CTPR2; 78.7 6.6 0.00023 24.8 6.1 62 78-147 8-71 (91)
43 2pl2_A Hypothetical conserved 77.8 6.7 0.00023 30.3 6.9 62 77-146 3-66 (217)
44 1elw_A TPR1-domain of HOP; HOP 77.4 11 0.00037 24.4 7.0 76 64-147 21-100 (118)
45 3qky_A Outer membrane assembly 77.3 7 0.00024 30.5 7.0 66 74-147 10-80 (261)
46 3ogk_B Coronatine-insensitive 76.5 1.2 4.2E-05 39.7 2.5 35 8-44 14-48 (592)
47 3rkv_A Putative peptidylprolyl 76.4 14 0.00046 26.6 7.9 64 76-147 60-125 (162)
48 1hxi_A PEX5, peroxisome target 76.2 10 0.00036 26.6 7.1 60 80-147 18-79 (121)
49 3mkr_A Coatomer subunit epsilo 75.2 7.6 0.00026 31.8 6.9 69 67-146 85-157 (291)
50 4i17_A Hypothetical protein; T 74.5 6.5 0.00022 29.8 5.9 93 47-147 7-104 (228)
51 3u4t_A TPR repeat-containing p 74.4 9.6 0.00033 29.2 6.9 75 64-146 54-135 (272)
52 4f3v_A ESX-1 secretion system 74.4 9 0.00031 32.7 7.3 70 80-158 172-247 (282)
53 2pl2_A Hypothetical conserved 74.1 3.9 0.00013 31.6 4.6 71 67-145 104-177 (217)
54 2l6j_A TPR repeat-containing p 73.2 12 0.00042 24.3 6.4 62 78-147 3-66 (111)
55 3vtx_A MAMA; tetratricopeptide 72.8 14 0.00048 26.8 7.2 63 76-146 104-168 (184)
56 2vyi_A SGTA protein; chaperone 72.2 18 0.00061 23.7 7.4 76 64-147 29-108 (131)
57 2xcb_A PCRH, regulatory protei 72.1 9.8 0.00034 27.0 6.1 62 77-146 16-79 (142)
58 1hh8_A P67PHOX, NCF-2, neutrop 71.6 13 0.00046 27.4 7.0 71 67-146 26-98 (213)
59 3qky_A Outer membrane assembly 70.9 4.4 0.00015 31.7 4.3 84 63-147 31-125 (261)
60 4ga2_A E3 SUMO-protein ligase 70.7 9.9 0.00034 27.6 6.0 62 77-146 29-92 (150)
61 3urz_A Uncharacterized protein 68.4 10 0.00035 29.0 5.8 37 91-127 65-103 (208)
62 2vgx_A Chaperone SYCD; alterna 67.7 13 0.00045 27.0 6.1 62 77-146 19-82 (148)
63 3q49_B STIP1 homology and U bo 67.7 24 0.00083 23.9 7.2 63 76-146 6-70 (137)
64 2c2l_A CHIP, carboxy terminus 67.6 16 0.00054 29.6 7.1 74 65-146 22-99 (281)
65 2lni_A Stress-induced-phosphop 65.7 16 0.00056 24.2 5.9 62 77-146 14-77 (133)
66 2yhc_A BAMD, UPF0169 lipoprote 65.7 17 0.00058 27.9 6.6 61 78-146 3-68 (225)
67 3u4t_A TPR repeat-containing p 65.4 19 0.00064 27.5 6.8 77 64-148 20-103 (272)
68 4i17_A Hypothetical protein; T 65.1 20 0.00068 27.0 6.9 65 75-147 3-70 (228)
69 1elr_A TPR2A-domain of HOP; HO 64.9 26 0.0009 22.9 7.5 76 64-147 21-107 (131)
70 2ho1_A Type 4 fimbrial biogene 64.5 19 0.00067 27.1 6.7 75 64-146 88-168 (252)
71 3upv_A Heat shock protein STI1 63.3 20 0.0007 24.3 6.1 61 79-147 4-66 (126)
72 2vq2_A PILW, putative fimbrial 63.2 29 0.00098 25.2 7.3 71 67-145 62-139 (225)
73 1na0_A Designed protein CTPR3; 62.6 28 0.00096 22.4 7.1 75 65-147 27-105 (125)
74 3sz7_A HSC70 cochaperone (SGT) 62.3 21 0.00072 25.6 6.3 61 78-146 10-72 (164)
75 1a17_A Serine/threonine protei 62.0 35 0.0012 23.6 7.3 74 65-146 31-108 (166)
76 1na3_A Designed protein CTPR2; 61.9 19 0.00066 22.4 5.4 60 64-124 26-89 (91)
77 3vtx_A MAMA; tetratricopeptide 61.6 25 0.00086 25.3 6.6 77 63-147 21-101 (184)
78 1elw_A TPR1-domain of HOP; HOP 61.2 24 0.00083 22.6 5.9 62 78-147 3-66 (118)
79 1na0_A Designed protein CTPR3; 60.8 30 0.001 22.3 6.4 60 79-146 9-70 (125)
80 3hym_B Cell division cycle pro 60.0 25 0.00087 27.3 6.8 76 64-147 210-298 (330)
81 4gco_A Protein STI-1; structur 59.9 31 0.001 24.3 6.7 61 79-147 13-75 (126)
82 1hh8_A P67PHOX, NCF-2, neutrop 59.7 34 0.0012 25.1 7.2 77 63-147 53-149 (213)
83 2q7f_A YRRB protein; TPR, prot 59.6 43 0.0015 24.7 7.8 75 64-146 108-186 (243)
84 2vyi_A SGTA protein; chaperone 59.1 30 0.001 22.5 6.2 63 77-147 10-74 (131)
85 3hym_B Cell division cycle pro 59.0 36 0.0012 26.4 7.5 60 68-127 77-140 (330)
86 1nzn_A CGI-135 protein, fissio 58.6 50 0.0017 25.0 7.9 80 76-162 32-121 (126)
87 4gyw_A UDP-N-acetylglucosamine 57.9 14 0.00049 35.2 5.8 77 63-147 59-139 (723)
88 2e2e_A Formate-dependent nitri 57.7 49 0.0017 23.7 8.3 77 64-146 27-108 (177)
89 4f3v_A ESX-1 secretion system 57.6 9.3 0.00032 32.6 4.0 61 77-146 134-198 (282)
90 2r5s_A Uncharacterized protein 56.4 36 0.0012 24.8 6.7 17 111-127 107-123 (176)
91 3as5_A MAMA; tetratricopeptide 55.6 47 0.0016 23.0 7.0 75 64-146 59-137 (186)
92 2fbn_A 70 kDa peptidylprolyl i 55.4 60 0.002 23.9 9.6 60 80-147 89-150 (198)
93 2r5s_A Uncharacterized protein 55.0 23 0.00077 25.9 5.4 60 68-128 95-160 (176)
94 2ho1_A Type 4 fimbrial biogene 54.8 35 0.0012 25.7 6.6 75 64-146 122-202 (252)
95 2hr2_A Hypothetical protein; a 54.4 70 0.0024 24.8 8.4 75 81-163 59-154 (159)
96 4gyw_A UDP-N-acetylglucosamine 54.3 92 0.0031 29.6 10.7 64 64-128 94-161 (723)
97 2pzi_A Probable serine/threoni 53.7 21 0.00072 33.1 6.0 47 77-127 392-448 (681)
98 3qou_A Protein YBBN; thioredox 52.5 27 0.00091 28.2 5.9 70 68-146 107-178 (287)
99 2kc7_A BFR218_protein; tetratr 51.9 39 0.0013 21.7 5.7 57 83-147 4-63 (99)
100 2h6f_A Protein farnesyltransfe 51.4 40 0.0014 29.1 7.2 53 76-128 128-182 (382)
101 1elr_A TPR2A-domain of HOP; HO 51.4 47 0.0016 21.6 6.5 60 79-146 4-65 (131)
102 2pzi_A Probable serine/threoni 51.0 30 0.001 32.1 6.6 63 76-146 430-494 (681)
103 2q7f_A YRRB protein; TPR, prot 50.8 71 0.0024 23.5 7.9 72 67-146 77-152 (243)
104 4eqf_A PEX5-related protein; a 50.4 62 0.0021 25.9 7.8 74 65-146 83-160 (365)
105 2vq2_A PILW, putative fimbrial 48.8 67 0.0023 23.1 7.1 74 66-147 27-105 (225)
106 3uq3_A Heat shock protein STI1 48.2 63 0.0022 23.9 7.1 60 67-127 159-222 (258)
107 3edt_B KLC 2, kinesin light ch 48.1 31 0.0011 25.9 5.3 74 64-145 18-111 (283)
108 2gw1_A Mitochondrial precursor 47.6 22 0.00074 29.8 4.7 62 78-146 185-264 (514)
109 4abn_A Tetratricopeptide repea 46.8 38 0.0013 29.6 6.4 62 77-146 100-164 (474)
110 4eqf_A PEX5-related protein; a 46.5 58 0.002 26.1 7.0 74 65-146 195-274 (365)
111 3qou_A Protein YBBN; thioredox 46.4 31 0.0011 27.8 5.3 44 97-147 202-247 (287)
112 2c2l_A CHIP, carboxy terminus 45.9 57 0.0019 26.1 6.9 62 77-146 2-65 (281)
113 1fch_A Peroxisomal targeting s 45.7 1.1E+02 0.0037 24.2 8.5 75 64-146 234-312 (368)
114 3fp2_A TPR repeat-containing p 45.6 66 0.0022 27.1 7.5 76 62-145 40-119 (537)
115 2y4t_A DNAJ homolog subfamily 45.4 67 0.0023 26.4 7.4 76 64-147 43-122 (450)
116 1fch_A Peroxisomal targeting s 44.4 76 0.0026 25.1 7.4 75 64-146 81-159 (368)
117 1ihg_A Cyclophilin 40; ppiase 44.0 93 0.0032 26.4 8.3 64 76-147 270-335 (370)
118 3as5_A MAMA; tetratricopeptide 43.6 76 0.0026 21.8 6.5 62 77-146 40-103 (186)
119 2dba_A Smooth muscle cell asso 43.4 72 0.0025 21.4 7.4 62 77-146 26-92 (148)
120 3ieg_A DNAJ homolog subfamily 43.0 50 0.0017 25.7 5.9 76 64-147 20-99 (359)
121 2h6f_A Protein farnesyltransfe 42.6 36 0.0012 29.4 5.5 51 77-128 164-216 (382)
122 2vsy_A XCC0866; transferase, g 42.3 59 0.002 28.6 6.9 79 64-147 74-156 (568)
123 4abn_A Tetratricopeptide repea 42.1 79 0.0027 27.5 7.7 76 64-146 196-285 (474)
124 1w3b_A UDP-N-acetylglucosamine 41.2 98 0.0034 25.0 7.7 74 65-146 255-332 (388)
125 3uq3_A Heat shock protein STI1 40.9 61 0.0021 24.0 5.9 76 64-147 22-107 (258)
126 3fp2_A TPR repeat-containing p 40.4 1.6E+02 0.0056 24.6 9.5 76 63-146 292-371 (537)
127 3urz_A Uncharacterized protein 40.4 68 0.0023 24.1 6.2 61 78-146 3-81 (208)
128 1wao_1 Serine/threonine protei 40.0 67 0.0023 28.3 6.9 77 63-147 22-102 (477)
129 3cv0_A Peroxisome targeting si 39.8 93 0.0032 23.9 7.0 74 66-147 40-117 (327)
130 2if4_A ATFKBP42; FKBP-like, al 39.0 1E+02 0.0035 25.5 7.6 59 81-147 232-292 (338)
131 1xnf_A Lipoprotein NLPI; TPR, 38.7 84 0.0029 23.6 6.5 45 64-108 128-172 (275)
132 3cv0_A Peroxisome targeting si 37.1 1.3E+02 0.0043 23.1 7.4 60 78-145 171-232 (327)
133 4gcn_A Protein STI-1; structur 36.1 1.1E+02 0.0036 21.2 6.5 57 82-146 11-69 (127)
134 2vsy_A XCC0866; transferase, g 35.9 80 0.0027 27.8 6.7 77 63-147 39-119 (568)
135 3mv2_B Coatomer subunit epsilo 35.4 88 0.003 26.9 6.7 75 64-146 83-163 (310)
136 4gcn_A Protein STI-1; structur 34.8 1.1E+02 0.0038 21.1 7.1 76 63-146 24-110 (127)
137 1zu2_A Mitochondrial import re 34.8 64 0.0022 25.1 5.3 96 74-169 31-144 (158)
138 3mkr_A Coatomer subunit epsilo 33.3 83 0.0028 25.4 6.0 61 77-144 61-126 (291)
139 2v5f_A Prolyl 4-hydroxylase su 33.1 1.1E+02 0.0038 20.6 6.4 62 78-147 4-74 (104)
140 2yhc_A BAMD, UPF0169 lipoprote 32.7 1.4E+02 0.0046 22.6 6.9 84 63-147 20-124 (225)
141 2ond_A Cleavage stimulation fa 32.2 1.8E+02 0.0061 23.1 7.8 30 97-126 81-113 (308)
142 1p5q_A FKBP52, FK506-binding p 31.6 69 0.0024 26.5 5.3 49 77-126 228-278 (336)
143 1w3b_A UDP-N-acetylglucosamine 29.2 1.4E+02 0.0049 24.0 6.8 76 64-147 50-129 (388)
144 1p5q_A FKBP52, FK506-binding p 27.8 2.3E+02 0.0077 23.3 7.9 60 80-147 197-258 (336)
145 2ond_A Cleavage stimulation fa 26.1 2.4E+02 0.0083 22.3 8.5 35 93-127 182-218 (308)
146 3gw4_A Uncharacterized protein 25.9 1.2E+02 0.0042 21.5 5.3 49 79-128 26-82 (203)
147 2y4t_A DNAJ homolog subfamily 25.3 2.6E+02 0.009 22.7 7.8 75 65-147 275-357 (450)
148 1a17_A Serine/threonine protei 25.1 1.6E+02 0.0056 19.9 6.5 60 79-146 13-74 (166)
149 2lh0_A Histone chaperone RTT10 24.9 82 0.0028 21.8 3.7 28 6-33 8-40 (70)
150 3nf1_A KLC 1, kinesin light ch 23.9 1.1E+02 0.0037 23.3 4.8 50 78-128 26-85 (311)
151 2ijq_A Hypothetical protein; s 23.8 84 0.0029 24.7 4.2 42 67-108 52-103 (161)
152 2gw1_A Mitochondrial precursor 23.8 2.4E+02 0.0081 23.3 7.3 75 64-146 23-100 (514)
153 2xpi_A Anaphase-promoting comp 23.6 2.3E+02 0.0077 24.2 7.3 76 64-147 492-578 (597)
154 3ieg_A DNAJ homolog subfamily 22.1 2.7E+02 0.0092 21.3 9.8 76 64-147 251-334 (359)
155 3q15_A PSP28, response regulat 21.5 1.6E+02 0.0054 24.0 5.7 57 81-145 103-167 (378)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.95 E-value=4e-06 Score=54.61 Aligned_cols=47 Identities=32% Similarity=0.411 Sum_probs=38.7
Q ss_pred cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhc
Q 038912 4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQA 53 (199)
Q Consensus 4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~a 53 (199)
...++.||+|++.+|++.+ ++.|+..+..+||++++++.++.+.+++
T Consensus 6 ~~~~~~LP~eil~~I~~~L---~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTS---CGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4578999999999999998 5789999999999999999999887764
No 2
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.00021 Score=53.74 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=63.2
Q ss_pred cchHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~ 140 (199)
.+..++++..+.||++|+|..|+..+.- .++.+.++.++.+|+..|+..|.|.+|++.. +.|.. . ..+++++
T Consensus 43 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~-~---d~~~A~~ 118 (138)
T 1klx_A 43 KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV-K---NEKQAVK 118 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC-c---CHHHHHH
Confidence 3567888999999999999999886552 6788999999999999999999999999998 55543 2 4567777
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
++.+.-
T Consensus 119 ~~~~Aa 124 (138)
T 1klx_A 119 TFEKAC 124 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 3
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.57 E-value=0.00024 Score=56.51 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=47.5
Q ss_pred CcchHHHHHHHhcCCccchHHHHHHHHhccC----ChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHH
Q 038912 64 HKNYSFLEKCRDSGNPEALYKQGVVEFFSYS----NLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKG 138 (199)
Q Consensus 64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~----~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g 138 (199)
+.+..++++.++.||++|+|..|+..+- + +.+.++.++.+|+..|+..|.|.+|.++. +.|.. ...+++
T Consensus 35 ~~A~~~~~~a~~~g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~----~d~~~A 108 (212)
T 3rjv_A 35 QKAEYWAQKAAAQGDGDALALLAQLKIR--NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA----TDVAHA 108 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSS----CCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc----cCHHHH
Confidence 3444666666777777777777765332 4 55677777777777777777777777666 33322 134666
Q ss_pred HHHHHHHh
Q 038912 139 MQHLDKVY 146 (199)
Q Consensus 139 ~~~~~~l~ 146 (199)
++++.+..
T Consensus 109 ~~~~~~A~ 116 (212)
T 3rjv_A 109 ITLLQDAA 116 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666554
No 4
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.31 E-value=0.00041 Score=55.15 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=55.8
Q ss_pred CcchHHHHHHHhcCCccchHHHHHHHHh---ccCChHHHHHHHHHHHhcCC----hhHHHHHHHHHH-hcCCCCCChhhH
Q 038912 64 HKNYSFLEKCRDSGNPEALYKQGVVEFF---SYSNLEAGVAYLDIATKSGH----LGASYILGVIFL-CKDDEDDDNESN 135 (199)
Q Consensus 64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f---~~~~~~~Gl~lL~~AA~~gh----~~A~Y~~~ml~~-c~G~~~~d~~~~ 135 (199)
+.+..++++.++.|+++|+|..|...+. ..++.+.++.++.+|+..|+ +.|.|.+|++.. +.|.. ...
T Consensus 70 ~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~----~d~ 145 (212)
T 3rjv_A 70 PQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP----EDD 145 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS----CCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC----CCH
Confidence 3345677777788888888888766543 15566788888888887777 788888888777 44433 667
Q ss_pred HHHHHHHHHHhh
Q 038912 136 QKGMQHLDKVYR 147 (199)
Q Consensus 136 ~~g~~~~~~l~~ 147 (199)
++++++|.+...
T Consensus 146 ~~A~~~~~~A~~ 157 (212)
T 3rjv_A 146 VKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 5
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.00095 Score=50.08 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=59.2
Q ss_pred chHHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHHHHH
Q 038912 66 NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQHLDK 144 (199)
Q Consensus 66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~~~~ 144 (199)
+..++++..+.||++|+ .|+. |+.....+.++.++.+|+..|++.|.|.+|++.. +.|.. . ..++++++|.+
T Consensus 14 A~~~~~~aa~~g~~~a~--lg~~-y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~-~---d~~~A~~~~~~ 86 (138)
T 1klx_A 14 AIQYYVKACELNEMFGC--LSLV-SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK-K---DLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHTTCTTHH--HHHH-TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC-C---CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhh--HHHH-HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC-c---cHHHHHHHHHH
Confidence 45788999999999999 6743 3444566779999999999999999999999998 44433 2 46778888876
Q ss_pred Hhh
Q 038912 145 VYR 147 (199)
Q Consensus 145 l~~ 147 (199)
.-+
T Consensus 87 Aa~ 89 (138)
T 1klx_A 87 ACG 89 (138)
T ss_dssp HHH
T ss_pred HHc
Confidence 643
No 6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.73 E-value=0.0012 Score=58.02 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=42.8
Q ss_pred ccCCCCChHHHHHHHHHhccCCHHHHH-HHHHhcHhHHHhhcchhHhhhccc
Q 038912 5 RSIFSLPDELLSEILARVGACSLDDLL-NAGLSCKLFNEITFDKYVLRQASI 55 (199)
Q Consensus 5 ~~~~~LpdDLlv~I~~kVA~~s~~DL~-~~~~tcKrf~~l~~~~~Vl~~asl 55 (199)
..++.||+|||.+|+.++ ++.||. .+.++||++++++.++.+.++.-.
T Consensus 49 ~~~~~LP~ell~~Il~~L---p~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAEL---PATELVQACRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp CCTTSSCHHHHHHHHHTS---CHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcC---CHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence 468899999999999999 678998 999999999999999998876543
No 7
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.51 E-value=0.00095 Score=59.15 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=48.3
Q ss_pred ccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccccCC
Q 038912 5 RSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPA 60 (199)
Q Consensus 5 ~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~l~~ 60 (199)
.+|+.||+|++..|++-+ ++.||..+-++||+.+.+++|+...|+.-...+..
T Consensus 3 ~~l~~LP~ei~l~IlsfL---~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~ 55 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFL---SPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPS 55 (312)
T ss_dssp CHHHHSCHHHHHHHHHTS---CHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGG
T ss_pred chhHhCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCC
Confidence 468899999999999998 89999999999999999999999999988876653
No 8
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.39 E-value=0.0069 Score=53.84 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCCccchHHHHHHHH--hccCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912 67 YSFLEKCRDSGNPEALYKQGVVEF--FSYSNLEAGVAYLDIATKSGHLGASYILGVIFL 123 (199)
Q Consensus 67 ~~FlkrC~~aGNpeA~Y~~Gm~~~--f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~ 123 (199)
..++++.. .|||+|+|..|...+ ...++.+.++.++.+|+..|+..|.|.+|.+..
T Consensus 237 ~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 237 QALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455545 566666666665533 445555556666666665556666666665555
No 9
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.13 E-value=0.016 Score=51.03 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=47.9
Q ss_pred CcchHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++.||++|.|..|...+.. .++.+.++..+.+|+..|+..|.|.+|.+.. +.|.. . ..++++
T Consensus 60 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~---~~~~A~ 135 (490)
T 2xm6_A 60 TQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK-V---DKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-C---CHHHHH
Confidence 34456667777777777777777554442 5566777777777777777777777777666 33222 1 234555
Q ss_pred HHHHHH
Q 038912 140 QHLDKV 145 (199)
Q Consensus 140 ~~~~~l 145 (199)
++|.+.
T Consensus 136 ~~~~~a 141 (490)
T 2xm6_A 136 KWFRLA 141 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 10
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.09 E-value=0.011 Score=52.41 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912 68 SFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL 123 (199)
Q Consensus 68 ~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~ 123 (199)
.++++.+ .||++|+|..|...... .++.+.++.++.+|+..|+..|.|.+|.+..
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 3444444 55555555555332221 2244555666666665566666666665555
No 11
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.89 E-value=0.0071 Score=52.06 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=46.7
Q ss_pred CccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912 2 FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK 57 (199)
Q Consensus 2 ~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~ 57 (199)
++..+|+.||+|++.+|++.+ ++.||..+.++||+++.++.++.+.++.-...
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l---~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFL---EPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTS---CHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ccCChhHHCCHHHHHHHHHhC---CHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 456789999999999999988 69999999999999999999998888765443
No 12
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.74 E-value=0.0039 Score=53.60 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=45.4
Q ss_pred CccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcc-hhHhhhccc
Q 038912 2 FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFD-KYVLRQASI 55 (199)
Q Consensus 2 ~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~-~~Vl~~asl 55 (199)
++..+|..||+|++.+|++.+ ++.||..+.++||+++.++.+ +.+.+++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l---~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYL---QFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTS---CHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred cccCChHHCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567788999999999999998 889999999999999999998 888776654
No 13
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.73 E-value=0.04 Score=43.95 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912 67 YSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL 123 (199)
Q Consensus 67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~ 123 (199)
..++++.++.|++++.|..|...+.. .++.+.++.++.+|+..++..|.+.+|.+..
T Consensus 62 ~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 62 ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 34445555555555555555443221 3444555555555555555555555555544
No 14
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.65 E-value=0.042 Score=43.82 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=62.5
Q ss_pred CcchHHHHHHHhcCCccchHHHHHHHHh---ccCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDSGNPEALYKQGVVEFF---SYSNLEAGVAYLDIATKSGHLGASYILGVIFLC-KDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f---~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~c-~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++.|+++|.|..|...+. ..++.+.++.++.+|+..++..|.|.+|.+..- .|.. ...++++
T Consensus 23 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~----~~~~~A~ 98 (273)
T 1ouv_A 23 TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS----QNTNKAL 98 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC----CCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcc----cCHHHHH
Confidence 4556788899999999999999976554 177889999999999999999999999999985 2211 1346777
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 99 ~~~~~a~ 105 (273)
T 1ouv_A 99 QYYSKAC 105 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.57 E-value=0.046 Score=48.07 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.3
Q ss_pred chHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHH
Q 038912 66 NYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQH 141 (199)
Q Consensus 66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~ 141 (199)
....+++..+.||++|.|..|...+.. .++.+.++.++.+|+..|++.|.|.+|.+.. +.|.. . ..++++++
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~---~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP-Q---DYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-C---CHHHHHHH
Confidence 357788889999999999999875542 6788999999999999999999999999998 44433 2 35777777
Q ss_pred HHHHh
Q 038912 142 LDKVY 146 (199)
Q Consensus 142 ~~~l~ 146 (199)
+.+..
T Consensus 102 ~~~a~ 106 (490)
T 2xm6_A 102 YKKAA 106 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.48 E-value=0.0063 Score=50.84 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=43.6
Q ss_pred cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912 4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK 57 (199)
Q Consensus 4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~ 57 (199)
...++.||||++.+|+..+ +..|+..+.++||++++++.++..++.+.+..
T Consensus 6 ~~~~~~LP~eil~~If~~L---~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~ 56 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESLWQTLDLTG 56 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTS---CHHHHHHTTSSCHHHHHHHTCSTTSSEEECTT
T ss_pred cCChhhCCHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCchhheeecccc
Confidence 4678999999999999988 66799999999999999999888777666543
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.17 E-value=0.006 Score=52.59 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=45.8
Q ss_pred CCccccCCCCChH----HHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912 1 MFRTRSIFSLPDE----LLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK 57 (199)
Q Consensus 1 ~~~~~~~~~LpdD----Llv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~ 57 (199)
+++..+|..||+| ++..|++.+ .+.||..+.++||+++.++.++.+.+++-...
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~~l---~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILSYL---DAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHTTC---CHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred hhhcChHHHCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 4577888999999 777777776 68999999999999999999999888775444
No 18
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.75 E-value=0.24 Score=35.05 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=56.4
Q ss_pred cCCccchHHHHHHHHhccCC--hHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 76 SGNPEALYKQGVVEFFSYSN--LEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~--~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
-.||++.+..|...||..+. .+.+..+|++|- ++.+..|.+.+|.+.+-.|.. +++++++.++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-------~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-------QEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Confidence 46899999999999997775 589999999964 557899999999999999975 899999998875
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.85 E-value=1.5 Score=33.13 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=66.3
Q ss_pred CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...+++.++ -.|+++.+..|.. ++..++.+.++..+.+|. .+.+..|.|-+|.+++-.|.. +++
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~-~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~-------~eA 123 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAI-YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP-------LKA 123 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-------HHH
Confidence 3455566666554 5788999999965 456778899999999975 457899999999999999965 888
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 038912 139 MQHLDKVYRAKRLSQCRNKLQSIT 162 (199)
Q Consensus 139 ~~~~~~l~~~r~~~~~r~~ik~~~ 162 (199)
++.|.+...-.--...+++++..+
T Consensus 124 ~~~~~~al~l~~~~~~~~~A~~ll 147 (151)
T 3gyz_A 124 KECFELVIQHSNDEKLKIKAQSYL 147 (151)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888888775321122445554443
No 20
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=90.82 E-value=0.14 Score=45.74 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=29.0
Q ss_pred cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHh
Q 038912 4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEI 43 (199)
Q Consensus 4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l 43 (199)
.+.++.||||++.+|++.+ .+..|+..+.++||+++++
T Consensus 3 ~d~~~~LPdevL~~If~~L--~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFI--QLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhc--CCchhHHHHHHHHHHHHHh
Confidence 3578999999999999999 3479999999999999988
No 21
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.14 E-value=2.9 Score=28.36 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=51.8
Q ss_pred hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 75 DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 75 ~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+-.|+++.|..|.. ++..++.+.++..+.+|.. +.+..|.+.+|.++.-.|.. +++++.+.+...
T Consensus 3 ~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-------DDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Confidence 35788999999975 5678888999999999865 45789999999999999865 777777776653
No 22
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.94 E-value=2.1 Score=29.57 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=65.3
Q ss_pred CcchHHHHHHHhcC-----CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912 64 HKNYSFLEKCRDSG-----NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQ 136 (199)
Q Consensus 64 ~~~~~FlkrC~~aG-----NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~ 136 (199)
+.+..++++.++.+ ++.+.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|++++-.|.. +
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~ 78 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-------E 78 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------H
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-------H
Confidence 45567788877764 45778888865 5577888999999999864 46899999999999999965 7
Q ss_pred HHHHHHHHHhhhh----hHHHHHHHHHHH
Q 038912 137 KGMQHLDKVYRAK----RLSQCRNKLQSI 161 (199)
Q Consensus 137 ~g~~~~~~l~~~r----~~~~~r~~ik~~ 161 (199)
+++++|.+..... .+..+.+-+..+
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 8888888776421 444444444433
No 23
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.67 E-value=3 Score=30.66 Aligned_cols=76 Identities=5% Similarity=-0.013 Sum_probs=58.7
Q ss_pred CcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+...+++.+ +-.|+++.+..|... +..++.+.++..+.+|.. +.+..+.|.+|.+++..|.. ++++
T Consensus 38 ~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-------~~A~ 109 (148)
T 2vgx_A 38 EDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL-------AEAE 109 (148)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH-------HHHH
Confidence 44455666654 456888999888754 577788999999999764 56899999999999999965 7788
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 110 ~~~~~al~ 117 (148)
T 2vgx_A 110 SGLFLAQE 117 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 24
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=89.33 E-value=4.1 Score=29.11 Aligned_cols=76 Identities=7% Similarity=-0.068 Sum_probs=58.3
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++ -.|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.|.+|.+++..|.. ++++
T Consensus 35 ~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~ 106 (142)
T 2xcb_A 35 DDAQKIFQALCMLDHYDARYFLGLGAC-RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL-------DGAE 106 (142)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------HHHH
Confidence 444556666543 4688888888876 4577888999999999764 56889999999999999965 7788
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 107 ~~~~~al~ 114 (142)
T 2xcb_A 107 SGFYSARA 114 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 25
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=88.89 E-value=3.9 Score=28.13 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=56.6
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++.++++ ..|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.|.+|.+++..|.. ++++
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------~~A~ 97 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALC-YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-------DEAI 97 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH-------HHHH
Confidence 344455555544 4567888888876 4567788999999988764 45789999999999998865 7778
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 98 ~~~~~a~~ 105 (137)
T 3q49_B 98 ANLQRAYS 105 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 26
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.48 E-value=2.9 Score=27.18 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=46.0
Q ss_pred cchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--C--ChhHHHHHHHHHHhc-CCCCCChhhHHH
Q 038912 65 KNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--G--HLGASYILGVIFLCK-DDEDDDNESNQK 137 (199)
Q Consensus 65 ~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--g--h~~A~Y~~~ml~~c~-G~~~~d~~~~~~ 137 (199)
.+...+++.++ ..++++.+..|.. ++..++.+.++..+.+|... . +..+.+.+|.+++-. |.. ++
T Consensus 24 ~A~~~~~~a~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~ 95 (112)
T 2kck_A 24 ESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE-------VE 95 (112)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS-------HH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH-------HH
Confidence 33445555443 3456666666654 44556677777777776643 3 567777777777777 755 66
Q ss_pred HHHHHHHHh
Q 038912 138 GMQHLDKVY 146 (199)
Q Consensus 138 g~~~~~~l~ 146 (199)
++++|.++.
T Consensus 96 A~~~~~~~~ 104 (112)
T 2kck_A 96 AEIAEARAK 104 (112)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHh
Confidence 666666554
No 27
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.43 E-value=5.1 Score=27.19 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=56.1
Q ss_pred cchHHHHHHHh--cCCc---cchHHHHHHHHhccCChHHHHHHHHHHHh--cCC---hhHHHHHHHHHHhcCCCCCChhh
Q 038912 65 KNYSFLEKCRD--SGNP---EALYKQGVVEFFSYSNLEAGVAYLDIATK--SGH---LGASYILGVIFLCKDDEDDDNES 134 (199)
Q Consensus 65 ~~~~FlkrC~~--aGNp---eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh---~~A~Y~~~ml~~c~G~~~~d~~~ 134 (199)
.+...+++.++ .+++ ++.|..|.. ++..++.+.++..+.++.. +.+ ..|.|.+|.+++-.|..
T Consensus 20 ~A~~~~~~~~~~~p~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~------ 92 (129)
T 2xev_A 20 DASQLFLSFLELYPNGVYTPNALYWLGES-YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN------ 92 (129)
T ss_dssp HHHHHHHHHHHHCSSSTTHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH------
Confidence 34456666554 3556 688888865 5677888999999999765 356 78899999999988864
Q ss_pred HHHHHHHHHHHhh
Q 038912 135 NQKGMQHLDKVYR 147 (199)
Q Consensus 135 ~~~g~~~~~~l~~ 147 (199)
++++++|.++..
T Consensus 93 -~~A~~~~~~~~~ 104 (129)
T 2xev_A 93 -TEAQQTLQQVAT 104 (129)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 778888877764
No 28
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.14 E-value=3 Score=30.53 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=59.1
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCCh--HHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNL--EAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQK 137 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~--~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~ 137 (199)
+.+..++++.++ ..|+++.+..|...++..++. +.++..+.+|.. +.+..+.+.+|.+++-.|.. ++
T Consensus 61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~ 133 (177)
T 2e2e_A 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY-------AQ 133 (177)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-------HH
Confidence 444555665443 468889999998878888887 999999988764 45788999999999988864 77
Q ss_pred HHHHHHHHhh
Q 038912 138 GMQHLDKVYR 147 (199)
Q Consensus 138 g~~~~~~l~~ 147 (199)
+++++.+...
T Consensus 134 A~~~~~~al~ 143 (177)
T 2e2e_A 134 AIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 29
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=86.01 E-value=1.4 Score=31.37 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=24.7
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcC
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKD 126 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G 126 (199)
.|+++.|..|... +..++.+.++..+.+|.. +.+..|.+.+|+++.-.|
T Consensus 49 ~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 49 EREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp TCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4555555555543 234444555555555432 234555555555555444
No 30
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.84 E-value=3.4 Score=26.81 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 75 DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 75 ~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+.+|+++.+..|.. ++..++.+.++.++.+|.. +.+..+.+.+|.+++..|.. +++++++.+...
T Consensus 2 ~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~a~~ 68 (112)
T 2kck_A 2 VDQNPEEYYLEGVL-QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-------EEAVDCYNYVIN 68 (112)
T ss_dssp CCSSTTGGGGHHHH-HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-------HHHHHHHHHHHH
Confidence 34678888888876 4567788999999999865 34678899999999988864 777777777653
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=85.74 E-value=4.9 Score=26.98 Aligned_cols=76 Identities=5% Similarity=0.044 Sum_probs=55.4
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. ++++
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-------~~A~ 104 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAAC-YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY-------TKAM 104 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH-------HHHH
Confidence 3445566665544 467778887765 4667788999999998765 35688999999999888854 7777
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 105 ~~~~~~~~ 112 (133)
T 2lni_A 105 DVYQKALD 112 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 32
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.19 E-value=5.4 Score=31.37 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=60.8
Q ss_pred cCCccchHHHHHHHHhccC--ChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhh
Q 038912 76 SGNPEALYKQGVVEFFSYS--NLEAGVAYLDIATKSG----HLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAK 149 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~--~~~~Gl~lL~~AA~~g----h~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~~r 149 (199)
..++++.|.-|+-++=... +...|+.+|....... +.+++|-+|+-.+-.|.. .++.+++..+.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-------~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-------EKALKYVRGLLQTE 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-------HHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-------HHHHHHHHHHHhcC
Confidence 4567888888877766443 3479999999877665 689999999999999865 88999999998632
Q ss_pred ----hHHHHHHHHHHHHH
Q 038912 150 ----RLSQCRNKLQSITQ 163 (199)
Q Consensus 150 ----~~~~~r~~ik~~~~ 163 (199)
......+.|++.+.
T Consensus 102 P~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 102 PQNNQAKELERLIDKAMK 119 (152)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 55556666665553
No 33
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=83.91 E-value=7.3 Score=27.70 Aligned_cols=77 Identities=6% Similarity=0.090 Sum_probs=58.8
Q ss_pred CCcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...+.+.+ +-.|+++.+..|.. ++..++.+.++..+.+|.. +.+..|.|.+|.+++..|.. +++
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-------~~A 100 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAAC-LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW-------SKA 100 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhH-HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH-------HHH
Confidence 344555666654 35688888888876 4567788999999998764 56889999999999998865 788
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
++.|.+...
T Consensus 101 ~~~~~~al~ 109 (126)
T 4gco_A 101 QRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 34
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=83.24 E-value=4 Score=27.76 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=54.5
Q ss_pred HHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 038912 68 SFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLD 143 (199)
Q Consensus 68 ~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~ 143 (199)
..+++.++ -.|+.+.|..|.. ++..++.+.++..+.+|.. +.+..+.|.+|.++...|.. +++++++.
T Consensus 6 ~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~~~~ 77 (115)
T 2kat_A 6 ERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-------AGARQAWE 77 (115)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH-HHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHH
Confidence 44555443 4678888888865 4667888999999999764 45788999999999998865 67777777
Q ss_pred HHhh
Q 038912 144 KVYR 147 (199)
Q Consensus 144 ~l~~ 147 (199)
+...
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 35
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=82.57 E-value=3.5 Score=30.15 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=41.1
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCC
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~ 128 (199)
+.+..+++++++ -.|+++.+..|.. ++..++.+.++..+.+|.. +.+..|.+.+|.+++-.|..
T Consensus 48 ~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 48 DLAKKYICTYINVQERDPKAHRFLGLL-YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 445566666544 3577777777765 3455666777777777653 45677777777777766643
No 36
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.34 E-value=11 Score=27.10 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=58.2
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++.+.++ -.|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.|.+|.+++..|.. ++++
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~ 99 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAA-YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY-------KGAK 99 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-------HHHH
Confidence 444556666554 4588888888876 5567888999999999764 46789999999999999865 7788
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 100 ~~~~~al~ 107 (164)
T 3sz7_A 100 EAYEKGIE 107 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877764
No 37
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=81.94 E-value=6.8 Score=26.54 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCCh---hHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHL---GASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~---~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
+++.|..|.. ++..++.+.++.++.++.. +.+. .+.|.+|.+.+-.|.. +++++++.++.
T Consensus 2 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~~~ 66 (129)
T 2xev_A 2 ARTAYNVAFD-ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-------QLAEAQFRDLV 66 (129)
T ss_dssp -CCHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-------HHHHHHHHHHH
Confidence 5677888865 5567888999999999775 3455 6999999999988865 77777777665
No 38
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.69 E-value=11 Score=25.81 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=52.5
Q ss_pred CcchHHHHHHHhcCC-----ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912 64 HKNYSFLEKCRDSGN-----PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQ 136 (199)
Q Consensus 64 ~~~~~FlkrC~~aGN-----peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~ 136 (199)
+.+...+++.++... +.+.+..|.. ++..++.+.++..+.++.. +.+..+.|.+|.+++-.|.. +
T Consensus 45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~ 116 (148)
T 2dba_A 45 GGALAAYTQALGLDATPQDQAVLHRNRAAC-HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL-------D 116 (148)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH-------H
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH-------H
Confidence 344456666555432 5566666654 5667788888888888764 34678888999998888854 7
Q ss_pred HHHHHHHHHhh
Q 038912 137 KGMQHLDKVYR 147 (199)
Q Consensus 137 ~g~~~~~~l~~ 147 (199)
++++++.+...
T Consensus 117 ~A~~~~~~al~ 127 (148)
T 2dba_A 117 QAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.41 E-value=3.9 Score=30.80 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.|+++.|..|+. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. +++++.|.+...
T Consensus 34 ~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-------~~Ai~~~~~al~ 98 (151)
T 3gyz_A 34 DMMDDIYSYAYD-FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-------QQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-------HHHHHHHHHHHh
Confidence 577899999975 5788899999999999764 56899999999999999965 888888887763
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=79.07 E-value=7.1 Score=29.84 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+..++++.++. .|+++.+..|.. ++..++.+.++.++.+|.. +.+..+.+.+|.+++-.|.. +++
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-------~~A 130 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIY-LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-------KLA 130 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH-------HHH
Confidence 34555666665543 467888877765 4567788899999988775 45788888999888887754 677
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
++++.+...
T Consensus 131 ~~~~~~a~~ 139 (275)
T 1xnf_A 131 QDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
No 41
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=78.92 E-value=8.9 Score=26.23 Aligned_cols=75 Identities=7% Similarity=0.031 Sum_probs=55.7
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+...+++.++ -.|+++.+..|... +..++.+.++..+.+|.. +.+..+.|.+|.+++..|.. ++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-------~~A~ 92 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAAL-AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY-------ASAL 92 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH-------HHHH
Confidence 344555665543 46788888888764 467788999999998764 45788999999999998865 6777
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 93 ~~~~~al 99 (126)
T 3upv_A 93 ETLDAAR 99 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 42
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=78.74 E-value=6.6 Score=24.78 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=47.1
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
++++++..|.. ++..++.+.++.++.+|.. +.+..+.+.+|.+++-.|.. +++++++.+...
T Consensus 8 ~~~~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-------DEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHh
Confidence 45677777764 5667788999999998864 35678889999999888864 777777777654
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=77.78 E-value=6.7 Score=30.26 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.|+++.+.+|.. ++..++.+.++..+.+|.. +.+..|.+.+|.+++-.|.. +++++++.+..
T Consensus 3 ~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al 66 (217)
T 2pl2_A 3 TAEQNPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV-------NPALENGKTLV 66 (217)
T ss_dssp -CCHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Confidence 356666666653 3455566677777776543 35667777777777766643 55666665554
No 44
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=77.36 E-value=11 Score=24.39 Aligned_cols=76 Identities=1% Similarity=-0.099 Sum_probs=53.6
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++.+.++. .|+.+.+..|.. ++..++.+.++..+.++.. +.+..+.+.+|.++...|.. ++++
T Consensus 21 ~~A~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~ 92 (118)
T 1elw_A 21 DDALQCYSEAIKLDPHNHVLYSNRSAA-YAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-------EEAK 92 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-------HHHH
Confidence 3444555555443 577777777765 4567788899999988764 34678888899888888854 7777
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
+++.+...
T Consensus 93 ~~~~~~~~ 100 (118)
T 1elw_A 93 RTYEEGLK 100 (118)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77776654
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=77.32 E-value=7 Score=30.49 Aligned_cols=66 Identities=9% Similarity=0.294 Sum_probs=50.9
Q ss_pred HhcCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CC---hhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 74 RDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GH---LGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 74 ~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh---~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.+..++++.|.+|.. ++..++-+.++.++.++... .+ ..|.|.+|.+++-.|.. ++++++|.++..
T Consensus 10 ~~~~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~-------~~A~~~~~~~l~ 80 (261)
T 3qky_A 10 LRHSSPQEAFERAME-FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY-------LLAASEYERFIQ 80 (261)
T ss_dssp -CCSSHHHHHHHHHH-HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH-------HHHHHHHHHHHH
Confidence 345788889999876 55678889999999998653 45 78999999999988865 777777777653
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=76.50 E-value=1.2 Score=39.72 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhh
Q 038912 8 FSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEIT 44 (199)
Q Consensus 8 ~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~ 44 (199)
..||||++.+|+..+ .+..|+..+.+.||+++.+.
T Consensus 14 ~~LPdeil~~I~~~L--~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYI--TDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTC--CCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhc--CCHHHHHHHHHHhHHHHHhh
Confidence 369999999999998 46899999999999999873
No 47
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=76.36 E-value=14 Score=26.63 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=50.5
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
..++.+++..|.. ++..++.+.++..+.+|.. +.+..|.|.+|.+++..|.. ++++++|.+...
T Consensus 60 ~~~~~~~~nla~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-------~~A~~~~~~al~ 125 (162)
T 3rkv_A 60 RKNIPLYANMSQC-YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL-------DEAEEDLKLLLR 125 (162)
T ss_dssp HTHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH-------HHHHHHHHHHHh
Confidence 3455677777766 5677888999999988753 56899999999999999965 778888887764
No 48
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=76.18 E-value=10 Score=26.55 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=47.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 80 EALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 80 eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+..|.+|+. ++..++.+.++..+.+|.. +.+..|.|.+|++++-.|.. +++++.+.+...
T Consensus 18 ~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~ 79 (121)
T 1hxi_A 18 ENPMEEGLS-MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-------GLAIIALNHARM 79 (121)
T ss_dssp SCHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred hhHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Confidence 345667765 5577888999999999864 56899999999999988864 788888887764
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=75.18 E-value=7.6 Score=31.83 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=52.4
Q ss_pred hHHHHHHHhc----CCccchHHHHHHHHhccCChHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 038912 67 YSFLEKCRDS----GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHL 142 (199)
Q Consensus 67 ~~FlkrC~~a----GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~ 142 (199)
..-+++.++. +|+++.|..|... ...++.+.++..+.+ +++.++.+.+|.++.-.|.. +++++.|
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~-~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~-------~~A~~~l 153 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIY-FYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRL-------DLARKEL 153 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHH-HHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCH-------HHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHH-HHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCH-------HHHHHHH
Confidence 4556665543 4888888888765 477888999999998 67899999999998888865 6666666
Q ss_pred HHHh
Q 038912 143 DKVY 146 (199)
Q Consensus 143 ~~l~ 146 (199)
.+..
T Consensus 154 ~~~~ 157 (291)
T 3mkr_A 154 KKMQ 157 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=74.49 E-value=6.5 Score=29.84 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=62.8
Q ss_pred hhHhhhccccccCCCCCCcchHHHHHHHhc---CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHH
Q 038912 47 KYVLRQASIEKIPAMPWHKNYSFLEKCRDS---GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVI 121 (199)
Q Consensus 47 ~~Vl~~asl~~l~~~~w~~~~~FlkrC~~a---GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml 121 (199)
|..+...+...+...-++.+..++.+.++. .|+.+.|..|.. ++..++.+.++..+.+|... .+..+.+.+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVC-ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHH-HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 333333333333333345556667766654 567778887765 55677889999999998754 467889999999
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 122 FLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 122 ~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+.-.|.. +++++++.+...
T Consensus 86 ~~~~~~~-------~~A~~~~~~al~ 104 (228)
T 4i17_A 86 YRDMKNN-------QEYIATLTEGIK 104 (228)
T ss_dssp HHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHcccH-------HHHHHHHHHHHH
Confidence 9988865 777777776654
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=74.41 E-value=9.6 Score=29.21 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred CcchHHHHHHHhc-CCccc----hHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912 64 HKNYSFLEKCRDS-GNPEA----LYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQ 136 (199)
Q Consensus 64 ~~~~~FlkrC~~a-GNpeA----~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~ 136 (199)
+.+...+.+.++. .|++. .+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +
T Consensus 54 ~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------~ 125 (272)
T 3u4t_A 54 DLAQKDIETYFSKVNATKAKSADFEYYGKI-LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF-------P 125 (272)
T ss_dssp HHHHHHHHHHHTTSCTTTCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-------H
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH-------H
Confidence 3334444444442 33444 3444433 3444555666666666543 34556666666666665543 5
Q ss_pred HHHHHHHHHh
Q 038912 137 KGMQHLDKVY 146 (199)
Q Consensus 137 ~g~~~~~~l~ 146 (199)
++++++.+..
T Consensus 126 ~A~~~~~~al 135 (272)
T 3u4t_A 126 LAIQYMEKQI 135 (272)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHHh
Confidence 5666665554
No 52
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.38 E-value=9 Score=32.73 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=53.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhh-hHHH
Q 038912 80 EALYKQGVVEFFSYSNLEAGVAYLDIATKSG-----HLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAK-RLSQ 153 (199)
Q Consensus 80 eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g-----h~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~~r-~~~~ 153 (199)
.++|..|+. +-..++.+.++..+.+|.... ..+|.|.+|+++.-.|.. +++...|.++.... . .+
T Consensus 172 ~a~~~LG~a-l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-------deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 172 AAGVAHGVA-AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-------SAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCc-HH
Confidence 478888987 566788899999999997544 346899999999999975 88888888887644 4 55
Q ss_pred HHHHH
Q 038912 154 CRNKL 158 (199)
Q Consensus 154 ~r~~i 158 (199)
.+.-+
T Consensus 243 ~~~aL 247 (282)
T 4f3v_A 243 VAAAL 247 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=74.10 E-value=3.9 Score=31.65 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=43.7
Q ss_pred hHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 038912 67 YSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS-GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLD 143 (199)
Q Consensus 67 ~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~-gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~ 143 (199)
...+++.++ -+|+++.+..|.. ++..++.+.++..+.+|..- .+..+.+.+|.++...|.. +++++.+.
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~ 175 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLV-YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL-------DEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH-------HHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCH-------HHHHHHHH
Confidence 344455443 4567777777764 45566667777777776432 4567777777777777754 55555555
Q ss_pred HH
Q 038912 144 KV 145 (199)
Q Consensus 144 ~l 145 (199)
+.
T Consensus 176 ~a 177 (217)
T 2pl2_A 176 KA 177 (217)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 54
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=73.23 E-value=12 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=49.2
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
++++.+..|.. ++..++-+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+...
T Consensus 3 ~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNS-LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-------TQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHT
T ss_pred hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHH
Confidence 45677778864 4677888999999998754 45789999999999988865 788888888764
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=72.79 E-value=14 Score=26.78 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=39.0
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
..|+++.+..|.. ++..++.+.++..+.++.. +.+..+.+.+|.++.-.|.. ++++++|.+..
T Consensus 104 ~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al 168 (184)
T 3vtx_A 104 TVYADAYYKLGLV-YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-------DEAVKYFKKAL 168 (184)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred ccchHHHHHHHHH-HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH-------HHHHHHHHHHH
Confidence 4556666666654 4455666777777766543 34667777777777766643 56666665543
No 56
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=72.18 E-value=18 Score=23.70 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=53.6
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++ ..++.+.+..|... +..++.+.++..+.++.. +.+..+.+.+|.++.-.|.. ++++
T Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~ 100 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPANAVYFCNRAAAY-SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH-------VEAV 100 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH-------HHHH
Confidence 344455666544 35677777777654 556778899999888764 34678889999988888864 7777
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
+++.+...
T Consensus 101 ~~~~~~~~ 108 (131)
T 2vyi_A 101 AYYKKALE 108 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 57
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=72.09 E-value=9.8 Score=26.99 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=49.4
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.++++.|..|.. ++..++.+.++.++.+|.. +.+..+.+.+|.++.-.|.. +++++.+.+..
T Consensus 16 ~~~~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al 79 (142)
T 2xcb_A 16 DTLEQLYALGFN-QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-------EQALQSYSYGA 79 (142)
T ss_dssp HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-------HHHHHHHHHHH
Confidence 456778888865 5667888999999999754 45789999999999988865 77888887765
No 58
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=71.60 E-value=13 Score=27.42 Aligned_cols=71 Identities=8% Similarity=0.184 Sum_probs=52.1
Q ss_pred hHHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 038912 67 YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDK 144 (199)
Q Consensus 67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~ 144 (199)
...+++.++ .++.+.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+
T Consensus 26 ~~~~~~a~~-~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~ 96 (213)
T 1hh8_A 26 LDAFSAVQD-PHSRICFNIGCM-YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY-------DLAIKDLKE 96 (213)
T ss_dssp HHHHHTSSS-CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHH
T ss_pred HHHHHHHcC-CChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH-------HHHHHHHHH
Confidence 334444432 378888888875 5677888999999999864 46788999999999988865 666666665
Q ss_pred Hh
Q 038912 145 VY 146 (199)
Q Consensus 145 l~ 146 (199)
..
T Consensus 97 al 98 (213)
T 1hh8_A 97 AL 98 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=70.93 E-value=4.4 Score=31.67 Aligned_cols=84 Identities=6% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCcchHHHHHHHhc--CC---ccchHHHHHHHHhccCChHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcC-CCCCC
Q 038912 63 WHKNYSFLEKCRDS--GN---PEALYKQGVVEFFSYSNLEAGVAYLDIATKS-----GHLGASYILGVIFLCKD-DEDDD 131 (199)
Q Consensus 63 w~~~~~FlkrC~~a--GN---peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~-----gh~~A~Y~~~ml~~c~G-~~~~d 131 (199)
++.+...+++.++. ++ +++.|..|.. ++..++.+.++..+.++... ....|.|.+|.+++-.+ ....|
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARA-YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence 45556677777665 45 7889999977 56678889999999998763 22678999999998611 11112
Q ss_pred hhhHHHHHHHHHHHhh
Q 038912 132 NESNQKGMQHLDKVYR 147 (199)
Q Consensus 132 ~~~~~~g~~~~~~l~~ 147 (199)
....++++++|.++..
T Consensus 110 ~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 110 QTDTRKAIEAFQLFID 125 (261)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 2356888888887764
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=70.72 E-value=9.9 Score=27.63 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.|+.+.|..|. .|+..++-+.++..+.+|.. +.+..|.+.+|.++.-.|.. ++++++|.+..
T Consensus 29 ~~~~~~~~la~-~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-------~~A~~~~~~al 92 (150)
T 4ga2_A 29 QKSIKGFYFAK-LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-------DKAVECYRRSV 92 (150)
T ss_dssp HHHTTHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred ccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-------HHHHHHHHHHH
Confidence 46778888885 47888899999999999753 56899999999999998865 77777777765
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=68.36 E-value=10 Score=28.98 Aligned_cols=37 Identities=5% Similarity=0.130 Sum_probs=17.6
Q ss_pred hccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 038912 91 FSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDD 127 (199)
Q Consensus 91 f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~ 127 (199)
+..++.+.++..+.+|.. +.+..|.+.+|.+++-.|.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 103 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 334444555555555432 2345555555555554443
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=67.73 E-value=13 Score=27.00 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
+++++.|..|.. ++..++.+.++.++.+|. .+.+..+.+.+|.++.-.|.. +++++.+.+..
T Consensus 19 ~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al 82 (148)
T 2vgx_A 19 DTLEQLYSLAFN-QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-------DLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-------HHHHHHHHHHH
Confidence 467788888865 556788899999999975 356889999999999988865 77888887765
No 63
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=67.69 E-value=24 Score=23.87 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
..++++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 6 ~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~al 70 (137)
T 3q49_B 6 SPSAQELKEQGNR-LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-------EQALADCRRAL 70 (137)
T ss_dssp CCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHH-HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 3567778888865 5677888999999999765 45688999999999988865 67777777765
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=67.58 E-value=16 Score=29.56 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=54.7
Q ss_pred cchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
.+...+.+.+ +-.|+++.+..|.. ++..++.+.++..+.+|.. +.+..|.|.+|.+++-.|.. +++++
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~ 93 (281)
T 2c2l_A 22 EAAACYGRAITRNPLVAVYYTNRALC-YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-------DEAIA 93 (281)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH-------HHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHH
Confidence 3444555544 34588888888875 4577888999999999875 45789999999999988865 66777
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
+|.+..
T Consensus 94 ~~~~al 99 (281)
T 2c2l_A 94 NLQRAY 99 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 65
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.68 E-value=16 Score=24.21 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=47.6
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.++++.+..|.. ++..++.+.++..+.+|... .+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~ 77 (133)
T 2lni_A 14 DLALMVKNKGNE-CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-------QLALKDCEECI 77 (133)
T ss_dssp CHHHHHHHHHHH-HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-------HHHHHHHHHHH
Confidence 456778888865 46777889999999998754 4688899999998877754 67777777665
No 66
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=65.67 E-value=17 Score=27.89 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=40.6
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHhc--CC---hhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GH---LGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh---~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
++++.|.+|.. ++..++-+.++..+.++... .+ ..|.|.+|.+.+-.|.. +++++.|.++.
T Consensus 3 ~~~~~~~~a~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~-------~~A~~~~~~~l 68 (225)
T 2yhc_A 3 PPNEIYATAQQ-KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-------PLAQAAIDRFI 68 (225)
T ss_dssp CHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHH
Confidence 45666777644 56667778888888876642 22 35777778877777754 66677776665
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=65.37 E-value=19 Score=27.49 Aligned_cols=77 Identities=9% Similarity=0.145 Sum_probs=59.1
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhcC-C----hhHHHHHHHHHHhcCCCCCChhhHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSG-H----LGASYILGVIFLCKDDEDDDNESNQ 136 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g-h----~~A~Y~~~ml~~c~G~~~~d~~~~~ 136 (199)
+.+..++++.++. .|+++.+..|. .++..++.+.++..+.+|...+ + ..+.+.+|.+....|.. +
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~ 91 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD-------S 91 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH-------H
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH-------H
Confidence 4455677776654 57889999998 6778888899999999988643 1 33478899999888865 8
Q ss_pred HHHHHHHHHhhh
Q 038912 137 KGMQHLDKVYRA 148 (199)
Q Consensus 137 ~g~~~~~~l~~~ 148 (199)
++++++.+....
T Consensus 92 ~A~~~~~~a~~~ 103 (272)
T 3u4t_A 92 LAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999888763
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=65.14 E-value=20 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=51.4
Q ss_pred hcCCccchHHHHHHHHhccCChHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 75 DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS---GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 75 ~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~---gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
...+|++.|.+|.. ++..++.+.++..+.+|..- ....+.|.+|.+.+-.|.. +++++++.+...
T Consensus 3 ~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~ 70 (228)
T 4i17_A 3 QTTDPNQLKNEGND-ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY-------KEAADYFDIAIK 70 (228)
T ss_dssp -CCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH-------HHHHHHHHHHHH
Confidence 34678999999976 56778889999999998753 4578888899999988865 778888887753
No 69
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=64.92 E-value=26 Score=22.89 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=53.4
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhcC--C-------hhHHHHHHHHHHhcCCCCCCh
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSG--H-------LGASYILGVIFLCKDDEDDDN 132 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g--h-------~~A~Y~~~ml~~c~G~~~~d~ 132 (199)
+.+..++++.++. .++.+.+..|.. ++..++.+.++..+.+|.... + ..+.|.+|.+.+-.|..
T Consensus 21 ~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---- 95 (131)
T 1elr_A 21 DTALKHYDKAKELDPTNMTYITNQAAV-YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY---- 95 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHH-HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----
Confidence 3444566665543 467777777765 456778889999998876542 2 67888889998888864
Q ss_pred hhHHHHHHHHHHHhh
Q 038912 133 ESNQKGMQHLDKVYR 147 (199)
Q Consensus 133 ~~~~~g~~~~~~l~~ 147 (199)
++++++|.+...
T Consensus 96 ---~~A~~~~~~~~~ 107 (131)
T 1elr_A 96 ---KDAIHFYNKSLA 107 (131)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 777777777654
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=64.50 E-value=19 Score=27.12 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=40.7
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK----SGHLGASYILGVIFLCKDDEDDDNESNQK 137 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~----~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~ 137 (199)
+.+...+++.++. .++.+.+..|.. ++..++.+.++.++.++.. +.+..+.+.+|.+++..|.. ++
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~ 159 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGF-LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP-------AQ 159 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH-------HH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH-------HH
Confidence 3334455554433 345555555543 3445566677777777654 23455666666666666643 55
Q ss_pred HHHHHHHHh
Q 038912 138 GMQHLDKVY 146 (199)
Q Consensus 138 g~~~~~~l~ 146 (199)
+++++.+..
T Consensus 160 A~~~~~~~~ 168 (252)
T 2ho1_A 160 AKEYFEKSL 168 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 71
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=63.32 E-value=20 Score=24.28 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+++.+.+|. .++..++-+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+...
T Consensus 4 a~~~~~~g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~ 66 (126)
T 3upv_A 4 AEEARLEGK-EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-------PEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-------HHHHHHHHHHHH
Confidence 456677775 45678888999999999864 45789999999999988865 778888877753
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=63.24 E-value=29 Score=25.20 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=35.7
Q ss_pred hHHHHHHHh--cCCccchHHHHHHHHhcc-CChHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 67 YSFLEKCRD--SGNPEALYKQGVVEFFSY-SNLEAGVAYLDIATK----SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 67 ~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~-~~~~~Gl~lL~~AA~----~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
...+.++++ ..++++.+..|... +.. ++.+.++..+.++.. +....+.+.+|.+.+-.|.. ++++
T Consensus 62 ~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~ 133 (225)
T 2vq2_A 62 QESFRQALSIKPDSAEINNNYGWFL-CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF-------GLAE 133 (225)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHH-HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH-------HHHH
Confidence 344444443 23455555554433 334 555666666666654 12245556666666655543 4455
Q ss_pred HHHHHH
Q 038912 140 QHLDKV 145 (199)
Q Consensus 140 ~~~~~l 145 (199)
+++.+.
T Consensus 134 ~~~~~~ 139 (225)
T 2vq2_A 134 AYLKRS 139 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 73
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=62.63 E-value=28 Score=22.44 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=48.4
Q ss_pred cchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
.+..++++.++. .++++.+..|.. ++..++.+.++..+.++... .+..+.+.+|.+++-.|.. +++++
T Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~ 98 (125)
T 1na0_A 27 EAIEYYQKALELDPNNAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-------DEAIE 98 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHH
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-------HHHHH
Confidence 334455554433 456666666644 45567778888888887643 4667778888888877754 66777
Q ss_pred HHHHHhh
Q 038912 141 HLDKVYR 147 (199)
Q Consensus 141 ~~~~l~~ 147 (199)
++.+...
T Consensus 99 ~~~~~~~ 105 (125)
T 1na0_A 99 YYQKALE 105 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 74
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=62.30 E-value=21 Score=25.64 Aligned_cols=61 Identities=7% Similarity=0.041 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
++++.+.+|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 10 ~a~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al 72 (164)
T 3sz7_A 10 ESDKLKSEGNA-AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-------EKAAEDAELAT 72 (164)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-------HHHHHHHHHHH
Confidence 45677888865 5678888999999999864 45789999999999988865 77788877765
No 75
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=62.03 E-value=35 Score=23.59 Aligned_cols=74 Identities=7% Similarity=0.070 Sum_probs=49.9
Q ss_pred cchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
.+...+++.++ ..|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. +++++
T Consensus 31 ~A~~~~~~al~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~ 102 (166)
T 1a17_A 31 NAIKFYSQAIELNPSNAIYYGNRSLA-YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-------RAALR 102 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH-------HHHHH
Confidence 33444554443 3467777777765 4556777888888888764 35678888888888887754 66777
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
++.+..
T Consensus 103 ~~~~a~ 108 (166)
T 1a17_A 103 DYETVV 108 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 76
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=61.90 E-value=19 Score=22.43 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=43.2
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHh
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLC 124 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c 124 (199)
+.+..++++.++ ..++++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-
T Consensus 26 ~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 26 DEAIEYYQKALELDPNNAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 344556666544 3678888888875 4567788999999999764 4678888888887653
No 77
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=61.57 E-value=25 Score=25.34 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...++++++. .|+++.+..|.. ++..++.+.++..+.++... .+..+.+.+|.+....+.. +.+
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~a 92 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKT-YMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK-------QAA 92 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH-------HHH
Confidence 44555666665543 577777777754 45566667777777776443 3566677777777666643 555
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
.+.+.+...
T Consensus 93 ~~~~~~a~~ 101 (184)
T 3vtx_A 93 IDALQRAIA 101 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=61.17 E-value=24 Score=22.57 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=46.5
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
++++.+..|. .++..++.+.++.++.+|.. +.+..+.+.+|.+.+-.|.. +++++++.+...
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~~ 66 (118)
T 1elw_A 3 QVNELKEKGN-KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-------QKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-------HHHHHHHHHHHH
Confidence 3456666665 45677888999999999754 35788899999999888864 777777776653
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=60.77 E-value=30 Score=22.26 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
+++.+..|. .++..++.+.++.++.++.. +.+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 9 ~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-------DEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHH
Confidence 566677775 45667888999999999864 34678888899998887754 67777776664
No 80
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=59.99 E-value=25 Score=27.28 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=59.5
Q ss_pred CcchHHHHHHHh-----------cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCC
Q 038912 64 HKNYSFLEKCRD-----------SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDD 130 (199)
Q Consensus 64 ~~~~~FlkrC~~-----------aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~ 130 (199)
+.+..+++++++ ..++++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|..
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-- 286 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV-CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF-- 286 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH--
Confidence 445567777766 5567788888875 5677888999999999864 45789999999999988864
Q ss_pred ChhhHHHHHHHHHHHhh
Q 038912 131 DNESNQKGMQHLDKVYR 147 (199)
Q Consensus 131 d~~~~~~g~~~~~~l~~ 147 (199)
+++++++.+...
T Consensus 287 -----~~A~~~~~~al~ 298 (330)
T 3hym_B 287 -----ENAVDYFHTALG 298 (330)
T ss_dssp -----HHHHHHHHTTTT
T ss_pred -----HHHHHHHHHHHc
Confidence 888889888764
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=59.86 E-value=31 Score=24.27 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.++.+-+|. .+|..++-+.++..+.+|.. +.+..+.+-+|.+++-.|.. +++++.+.+...
T Consensus 13 a~~~~~~G~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~ 75 (126)
T 4gco_A 13 AQEEKNKGN-EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-------QRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-------HHHHHHHHHHHH
Confidence 356677785 57788999999999999753 56889999999999998865 788888887764
No 82
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=59.67 E-value=34 Score=25.10 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=58.7
Q ss_pred CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--C----------------ChhHHHHHHHHH
Q 038912 63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--G----------------HLGASYILGVIF 122 (199)
Q Consensus 63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--g----------------h~~A~Y~~~ml~ 122 (199)
++.+...++++++ ..++++.+..|.. ++..++.+.++..+.+|... + +..+.|.+|.++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGML-YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHH-HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 3455566666554 5788899999975 56688889999999998762 2 238999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 123 LCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 123 ~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+-.|.. ++++++|.+...
T Consensus 132 ~~~g~~-------~~A~~~~~~al~ 149 (213)
T 1hh8_A 132 AKKEEW-------KKAEEQLALATS 149 (213)
T ss_dssp HHTTCH-------HHHHHHHHHHHT
T ss_pred HHccCH-------HHHHHHHHHHHH
Confidence 988864 788888887764
No 83
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=59.58 E-value=43 Score=24.71 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=47.3
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++. .++++.+..|.. ++..++.+.++.++.++... .+..+.+.+|.+.+..|.. ++++
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~ 179 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTV-LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML-------DEAL 179 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-------HHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH-------HHHH
Confidence 4445566665544 356666666644 44566777888888776543 4577777778777777765 5566
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 180 ~~~~~~~ 186 (243)
T 2q7f_A 180 SQFAAVT 186 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 84
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=59.09 E-value=30 Score=22.50 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=47.0
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.++++.+..|... +..++.+.++.++.++.. +.+..+.+.+|.+.+-.|.. +++++++.+...
T Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~~ 74 (131)
T 2vyi_A 10 AEAERLKTEGNEQ-MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-------AGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-------HHHHHHHHHHHh
Confidence 3456677777654 567788999999999764 34688889999999888864 677777776653
No 85
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=58.98 E-value=36 Score=26.37 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCC
Q 038912 68 SFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDD 127 (199)
Q Consensus 68 ~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~ 127 (199)
.++.+.++. .|+++.+..|...+-..++.+.++..+.+|... .+..+.+.+|.++.-.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 77 YLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 444444332 356666666644333222556666666665532 345566666666665554
No 86
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=58.60 E-value=50 Score=24.95 Aligned_cols=80 Identities=9% Similarity=0.111 Sum_probs=56.1
Q ss_pred cCCccchHHHHHHHHhccC--ChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhh-
Q 038912 76 SGNPEALYKQGVVEFFSYS--NLEAGVAYLDIATKSG----HLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRA- 148 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~--~~~~Gl~lL~~AA~~g----h~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~~- 148 (199)
+-++++.|.-+.-++=... +...|+.+|..-...+ ..+.+|.+|+-.+-.|.. .++.+++..+...
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y-------~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-------EKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhC
Confidence 3456777776655554333 3357999999877655 468999999999999975 8889999988753
Q ss_pred ---hhHHHHHHHHHHHH
Q 038912 149 ---KRLSQCRNKLQSIT 162 (199)
Q Consensus 149 ---r~~~~~r~~ik~~~ 162 (199)
+-....++-|++-+
T Consensus 105 P~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 105 PQNNQAKELERLIDKAM 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 25555555555444
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=57.92 E-value=14 Score=35.21 Aligned_cols=77 Identities=8% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...+++.+ +-++++|.+..|... ...++.+.++..+++|.. +.+.+|.+-+|.++.-.|.. +++
T Consensus 59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l-~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-------~eA 130 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTFADAYSNMGNTL-KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-------PEA 130 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHH
Confidence 355556666654 457888999999764 566778999999998753 56899999999999988864 888
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
++++.+..+
T Consensus 131 i~~~~~Al~ 139 (723)
T 4gyw_A 131 IASYRTALK 139 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=57.67 E-value=49 Score=23.66 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=55.0
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHH-HHhcCCCCCChhhHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVI-FLCKDDEDDDNESNQKG 138 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml-~~c~G~~~~d~~~~~~g 138 (199)
+.+...+++.++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+ .+-.|.. ..+++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~-----~~~~A 100 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEY-YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH-----MTAQT 100 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----CCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc-----chHHH
Confidence 5566677776654 588888888876 4567888999999999764 4578889999998 5566642 12566
Q ss_pred HHHHHHHh
Q 038912 139 MQHLDKVY 146 (199)
Q Consensus 139 ~~~~~~l~ 146 (199)
++++.+..
T Consensus 101 ~~~~~~al 108 (177)
T 2e2e_A 101 RAMIDKAL 108 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 89
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=57.64 E-value=9.3 Score=32.64 Aligned_cols=61 Identities=11% Similarity=-0.030 Sum_probs=50.3
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHhcCC----hhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGH----LGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~gh----~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
|++ +.|..|+ .++..++-+.++.+|.++..-++ ..|.|.+|+++...|.. +++++.+.+..
T Consensus 134 ~~~-~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~-------~eAl~~l~~a~ 198 (282)
T 4f3v_A 134 EHL-VAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF-------TEAERRLTEAN 198 (282)
T ss_dssp HHH-HHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred chH-HHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHh
Confidence 344 8899997 78889999999999998775442 35899999999999965 88999988874
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=56.40 E-value=36 Score=24.80 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHHHhcCC
Q 038912 111 HLGASYILGVIFLCKDD 127 (199)
Q Consensus 111 h~~A~Y~~~ml~~c~G~ 127 (199)
+..+.|.+|.++.-.|.
T Consensus 107 ~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 107 NFELACELAVQYNQVGR 123 (176)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccc
Confidence 44555555555554443
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=55.60 E-value=47 Score=22.98 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=42.7
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++. .++++.+..|.. ++..++.+.++.++.++.. +.+..+.+.+|.++...|.. ++++
T Consensus 59 ~~A~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~ 130 (186)
T 3as5_A 59 DRGTELLERSLADAPDNVKVATVLGLT-YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF-------DEAI 130 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH-------HHHH
Confidence 3334555554443 455555555543 4445666777777777643 24566677777777766643 5555
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 131 ~~~~~~~ 137 (186)
T 3as5_A 131 DSFKIAL 137 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 92
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=55.41 E-value=60 Score=23.91 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=47.0
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 80 EALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 80 eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.+.+..|.. ++..++.+.++..+.+|.. +.+..|.|.+|.+++..|.. ++++++|.+...
T Consensus 89 ~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATC-YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-------EEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHH
Confidence 666667765 4577888999999998764 45789999999999998865 777888877653
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=54.99 E-value=23 Score=25.94 Aligned_cols=60 Identities=15% Similarity=-0.033 Sum_probs=41.8
Q ss_pred HHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhcC--C--hhHHHHHHHHHHhcCCC
Q 038912 68 SFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSG--H--LGASYILGVIFLCKDDE 128 (199)
Q Consensus 68 ~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g--h--~~A~Y~~~ml~~c~G~~ 128 (199)
..+++.++ -+|+++.|..|.. +...++.+.++..+.++.... + ..|.+.+|.++...|..
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQ-YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 44444443 3678888888876 456778888888888876432 3 44888888888877764
No 94
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=54.84 E-value=35 Score=25.66 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=53.7
Q ss_pred CcchHHHHHHHh----cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912 64 HKNYSFLEKCRD----SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQK 137 (199)
Q Consensus 64 ~~~~~FlkrC~~----aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~ 137 (199)
+.+..++++.++ ..++.+.+..|.. ++..++.+.++.++.++... .+..+.+.+|.+++-.|.. ++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~ 193 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLV-SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY-------VP 193 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-------HH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-------HH
Confidence 455667777766 3355666666654 45677889999999987653 4678888899888888854 67
Q ss_pred HHHHHHHHh
Q 038912 138 GMQHLDKVY 146 (199)
Q Consensus 138 g~~~~~~l~ 146 (199)
+++++.+..
T Consensus 194 A~~~~~~~~ 202 (252)
T 2ho1_A 194 ARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 95
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=54.41 E-value=70 Score=24.83 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=58.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHH---------hcCChhHH----HHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 81 ALYKQGVVEFFSYSNLEAGVAYLDIAT---------KSGHLGAS----YILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 81 A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA---------~~gh~~A~----Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+.+-.|.. +...++-+.++....+|- .+.+..|. |-.|+.+...|.. +++++.|.+..+
T Consensus 59 a~~n~g~a-l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-------eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEA-LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG-------AEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-------HHHHHHHHHHHh
Confidence 66777755 556778888999888876 45678889 9999999999975 889999988874
Q ss_pred --------hhhHHHHHHHHHHHHH
Q 038912 148 --------AKRLSQCRNKLQSITQ 163 (199)
Q Consensus 148 --------~r~~~~~r~~ik~~~~ 163 (199)
.+.+++..+.|+....
T Consensus 131 l~p~d~~~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 131 MIEERKGETPGKERMMEVAIDRIA 154 (159)
T ss_dssp HHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2378888888876553
No 96
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=54.30 E-value=92 Score=29.57 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.6
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCC
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~ 128 (199)
+.+...+++.++ -+|++|.+..|.. +...++.+.++..+++|.. +.+..|.+-+|.++...|..
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~-~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASI-HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 555566666554 5788999999976 5567888999999999754 56899999999999988876
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.68 E-value=21 Score=33.12 Aligned_cols=47 Identities=17% Similarity=-0.028 Sum_probs=24.3
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHH----------hcCChhHHHHHHHHHHhcCC
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIAT----------KSGHLGASYILGVIFLCKDD 127 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA----------~~gh~~A~Y~~~ml~~c~G~ 127 (199)
+||++.|..| +..++.+.++..+.+|. .+.+.++.+.+|.+++-.|.
T Consensus 392 ~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~ 448 (681)
T 2pzi_A 392 TDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD 448 (681)
T ss_dssp TSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC
T ss_pred CCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC
Confidence 4555555544 44455555555555554 13345555555555555553
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=52.54 E-value=27 Score=28.21 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 038912 68 SFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKV 145 (199)
Q Consensus 68 ~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l 145 (199)
.|++.-+ -+++++.+.+|.. +...++.+.++.++++|. .+.+..|.|.+|.+++-.|.. +++.+++.++
T Consensus 107 ~~l~~~l-p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~-------~~A~~~l~~~ 177 (287)
T 3qou_A 107 ALLDXVL-PREEELXAQQAMQ-LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS-------EDAEAVLXTI 177 (287)
T ss_dssp HHHHHHS-CCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH-------HHHHHHHTTS
T ss_pred HHHHHHc-CCchhhHHHHHHH-HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH-------HHHHHHHHhC
Confidence 4555543 5677888888865 457788899999999864 567899999999999988865 6777777765
Q ss_pred h
Q 038912 146 Y 146 (199)
Q Consensus 146 ~ 146 (199)
.
T Consensus 178 ~ 178 (287)
T 3qou_A 178 P 178 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 99
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=51.92 E-value=39 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhc--CChh-HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 83 YKQGVVEFFSYSNLEAGVAYLDIATKS--GHLG-ASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 83 Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~-A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
|.+|. .++..++.+.++..+.+|... .+.. +.+.+|.+++-.|.. ++++++|.+...
T Consensus 4 ~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~ 63 (99)
T 2kc7_A 4 LKTIK-ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-------QKALNNYQSAIE 63 (99)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Confidence 33443 456777889999999987643 4667 899999999988864 778888887764
No 100
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=51.45 E-value=40 Score=29.15 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=29.5
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCC
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~ 128 (199)
-+|+++.+.+|.+..-.-++.+.++..+.+|.. +.+..|.|-+|.++.-.|..
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence 355666666665544333235666666666543 34566666666666655544
No 101
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=51.42 E-value=47 Score=21.56 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
+++.+..|.. ++..++.+.++.++.+|... .+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 4 ~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGND-AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-------NKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH-------HHHHHHHHHHH
Confidence 3456666654 56788889999999998753 4678888999999888864 66666666554
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=51.02 E-value=30 Score=32.06 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=46.0
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
-.|+++.+.+|.. ++..++.+.++..+.+|.. +.+..|.|.+|++++-.|.. +++++.|.+..
T Consensus 430 p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al 494 (681)
T 2pzi_A 430 SESVELPLMEVRA-LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY-------DSATKHFTEVL 494 (681)
T ss_dssp TTCSHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHH
T ss_pred ccchhHHHHHHHH-HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Confidence 4566777777764 4556777888888888663 46788888888888887754 67777777665
No 103
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=50.80 E-value=71 Score=23.45 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=36.1
Q ss_pred hHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 038912 67 YSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQHL 142 (199)
Q Consensus 67 ~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~ 142 (199)
...+++.++. .++.+.+..|.. ++..++.+.++.++.++... .+..+.+.+|.+.+-.|.. +++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~ 148 (243)
T 2q7f_A 77 LAFYDKALELDSSAATAYYGAGNV-YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP-------KLALPYL 148 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH-------HHHHHHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-------HHHHHHH
Confidence 3444444433 244444444433 33445556666666665432 3455566666666655543 5555555
Q ss_pred HHHh
Q 038912 143 DKVY 146 (199)
Q Consensus 143 ~~l~ 146 (199)
.+..
T Consensus 149 ~~~~ 152 (243)
T 2q7f_A 149 QRAV 152 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=50.45 E-value=62 Score=25.94 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=53.4
Q ss_pred cchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
.+..++++.++ ..|+++.+..|... +..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. +++++
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~ 154 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQ-AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ-------QDACE 154 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH-------HHHHH
Confidence 33456666554 46778888887654 466778899999998764 45688888999888888854 67777
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
++.+..
T Consensus 155 ~~~~al 160 (365)
T 4eqf_A 155 ALKNWI 160 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 105
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=48.80 E-value=67 Score=23.13 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=51.4
Q ss_pred chHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhc-CCCCCChhhHHHHHH
Q 038912 66 NYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCK-DDEDDDNESNQKGMQ 140 (199)
Q Consensus 66 ~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~-G~~~~d~~~~~~g~~ 140 (199)
+...+++.++ ..++++.+..|... +..++.+.++.++.+|.. +.+..+.+.+|.+++.. |.. +++++
T Consensus 27 A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-------~~A~~ 98 (225)
T 2vq2_A 27 ATASIEDALKSDPKNELAWLVRAEIY-QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP-------AESMA 98 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH-------HHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH-------HHHHH
Confidence 3344454443 35677777777654 567788999999999865 34678888899988887 754 66777
Q ss_pred HHHHHhh
Q 038912 141 HLDKVYR 147 (199)
Q Consensus 141 ~~~~l~~ 147 (199)
++.+...
T Consensus 99 ~~~~~~~ 105 (225)
T 2vq2_A 99 YFDKALA 105 (225)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7766643
No 106
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=48.19 E-value=63 Score=23.85 Aligned_cols=60 Identities=5% Similarity=0.021 Sum_probs=30.9
Q ss_pred hHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 038912 67 YSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDD 127 (199)
Q Consensus 67 ~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~ 127 (199)
..++++.++ ..++.+.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAA-LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCcccHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 344444433 2345555555543 3445555666666666542 2345566666666665554
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=48.05 E-value=31 Score=25.90 Aligned_cols=74 Identities=8% Similarity=0.053 Sum_probs=48.1
Q ss_pred CcchHHHHHHHh----------cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc----------CChhHHHHHHHHHH
Q 038912 64 HKNYSFLEKCRD----------SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS----------GHLGASYILGVIFL 123 (199)
Q Consensus 64 ~~~~~FlkrC~~----------aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~----------gh~~A~Y~~~ml~~ 123 (199)
+.+..+++++++ ..++.+.+..|.. ++..++.+.++.++.+|..- ....+.+.+|.++.
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALV-YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 445556665554 2345667777754 55677888999998887643 24567788888888
Q ss_pred hcCCCCCChhhHHHHHHHHHHH
Q 038912 124 CKDDEDDDNESNQKGMQHLDKV 145 (199)
Q Consensus 124 c~G~~~~d~~~~~~g~~~~~~l 145 (199)
-.|.. +++++++.+.
T Consensus 97 ~~g~~-------~~A~~~~~~a 111 (283)
T 3edt_B 97 KRGKY-------KEAEPLCKRA 111 (283)
T ss_dssp TTTCH-------HHHHHHHHHH
T ss_pred HhccH-------HHHHHHHHHH
Confidence 77764 5555555544
No 108
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=47.63 E-value=22 Score=29.83 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=38.0
Q ss_pred CccchHHHHHHHHh--ccCChHHHHHHHHHHHh----------------cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 78 NPEALYKQGVVEFF--SYSNLEAGVAYLDIATK----------------SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f--~~~~~~~Gl~lL~~AA~----------------~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
|+++.+..|+..+. ..++.+.++.++.++.. +.+..+.+.+|.+++-.|.. ++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~ 257 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP-------LGAH 257 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH-------HHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH-------HHHH
Confidence 36666676666554 35556777777777665 34556666677776666643 5566
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 258 ~~~~~~l 264 (514)
T 2gw1_A 258 EDIKKAI 264 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 109
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=46.79 E-value=38 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.9
Q ss_pred CCccchHHHHHHHHhccCCh-HHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNL-EAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~-~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.+++++|..|... +..++. +.++..+.+|. .+.+..|.+.+|.+++-.|.. ++++++|.+..
T Consensus 100 ~~a~~~~~lg~~~-~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al 164 (474)
T 4abn_A 100 VEAQALMLKGKAL-NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV-------TSAHTCFSGAL 164 (474)
T ss_dssp CCHHHHHHHHHHH-TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Confidence 4667777777654 445566 78888887764 345677888888888877754 66666666554
No 110
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=46.53 E-value=58 Score=26.13 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=43.2
Q ss_pred cchHHHHHHHhcC----CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 65 KNYSFLEKCRDSG----NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 65 ~~~~FlkrC~~aG----NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
.+...+++.++.. ++.+.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. +++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A 266 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVL-FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-------EEA 266 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHH
Confidence 3344555554432 45566666643 3445666777777777653 34566777777777766643 555
Q ss_pred HHHHHHHh
Q 038912 139 MQHLDKVY 146 (199)
Q Consensus 139 ~~~~~~l~ 146 (199)
++++.+..
T Consensus 267 ~~~~~~al 274 (365)
T 4eqf_A 267 VEAYTRAL 274 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=46.42 E-value=31 Score=27.80 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 97 EAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 97 ~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+.++..+++|. .+.+.+|.|.+|.+++..|.. +++++.+.++..
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-------~~A~~~l~~~l~ 247 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-------EEALELLFGHLR 247 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHh
Confidence 33455555543 456889999999999988864 777777777654
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.92 E-value=57 Score=26.14 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=49.3
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.++++.+.+|.. ++..++.+.++.++.+|.. +.+..+.+.+|.+++..|.. +++++++.+..
T Consensus 2 ~~a~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al 65 (281)
T 2c2l_A 2 PSAQELKEQGNR-LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-------EQALADCRRAL 65 (281)
T ss_dssp CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHT
T ss_pred hhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 456778888865 5677888999999999864 45789999999999988864 77788877765
No 113
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=45.66 E-value=1.1e+02 Score=24.20 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=51.5
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+...+++.++ -.++++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. ++++
T Consensus 234 ~~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~ 305 (368)
T 1fch_A 234 DKAVDCFTAALSVRPNDYLLWNKLGAT-LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAV 305 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-------HHHH
Confidence 445566666554 3456677777754 4556777888888888754 45678888888888887754 6677
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 306 ~~~~~al 312 (368)
T 1fch_A 306 EHFLEAL 312 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=45.61 E-value=66 Score=27.12 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCCcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912 62 PWHKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQK 137 (199)
Q Consensus 62 ~w~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~ 137 (199)
-++.+..+++++++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. ++
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~ 111 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF-------TD 111 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HH
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH-------HH
Confidence 356677777776654 588888888865 4567888999999999764 56889999999999988864 77
Q ss_pred HHHHHHHH
Q 038912 138 GMQHLDKV 145 (199)
Q Consensus 138 g~~~~~~l 145 (199)
++++|..+
T Consensus 112 A~~~~~~~ 119 (537)
T 3fp2_A 112 AMFDLSVL 119 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777544
No 115
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=45.45 E-value=67 Score=26.40 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=54.7
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+...+.+.++ .+|+.+.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. ++++
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~ 114 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL-------DEAE 114 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-------HHHH
Confidence 344556666554 3577788887765 4567788999999998765 34688888899998888854 6777
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
++|.+...
T Consensus 115 ~~~~~~~~ 122 (450)
T 2y4t_A 115 DDFKKVLK 122 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77776653
No 116
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=44.37 E-value=76 Score=25.12 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=52.1
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++...|.. ++++
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~ 152 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ-------RQAC 152 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-------HHHH
Confidence 3344566666654 567777777754 4566777888888888754 34788888888888887754 6677
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+++.+..
T Consensus 153 ~~~~~~~ 159 (368)
T 1fch_A 153 EILRDWL 159 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 117
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=44.01 E-value=93 Score=26.40 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=50.4
Q ss_pred cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 76 SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 76 aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
..++.+.+..|.. ++..++.+.++..+.+|.. +.+..|.|.+|.+++..|.. ++++++|.+...
T Consensus 270 ~~~~~~~~nla~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~eA~~~l~~Al~ 335 (370)
T 1ihg_A 270 PVALSCVLNIGAC-KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-------DQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-------HHHHHHHHHHHH
Confidence 3556777777765 4577888999999999875 35789999999999998865 778888887764
No 118
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=43.59 E-value=76 Score=21.82 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.++.+.+..|.. ++..++.+.++.++.++... .+..+.+.+|.+++..|.. +++++++.+..
T Consensus 40 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~ 103 (186)
T 3as5_A 40 FDVDVALHLGIA-YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY-------DLAVPLLIKVA 103 (186)
T ss_dssp CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHH
T ss_pred cChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 466777777754 45677889999999997643 4678888899998888864 66777776654
No 119
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.40 E-value=72 Score=21.37 Aligned_cols=62 Identities=19% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHhcC--C---hhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSG--H---LGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g--h---~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
.++++.+..|. .++..++.+.++.++.+|.... + ..+.+.+|.+++-.|.. +++++++.+..
T Consensus 26 ~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~ 92 (148)
T 2dba_A 26 SSVEQLRKEGN-ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY-------DKAETEASKAI 92 (148)
T ss_dssp CCHHHHHHHHH-HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-------HHHHHHHHHHH
Confidence 46666777774 5667888899999999987643 2 67788888888888864 67777777665
No 120
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=43.05 E-value=50 Score=25.74 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=57.0
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..+++++++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. ++++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~ 91 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL-------DEAE 91 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh-------HHHH
Confidence 4445666666543 577888888755 4567788999999998764 45788999999999988864 7888
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
+++.+...
T Consensus 92 ~~~~~~~~ 99 (359)
T 3ieg_A 92 DDFKKVLK 99 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887764
No 121
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=42.57 E-value=36 Score=29.41 Aligned_cols=51 Identities=6% Similarity=-0.153 Sum_probs=24.6
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCC
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~ 128 (199)
.|+.+.|.+|.... ..++.+.++..+.+|. ++.+..|.+-+|.++...|..
T Consensus 164 ~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 164 KNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp TCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 35555555554432 3344455555555543 233455555555555554443
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=42.29 E-value=59 Score=28.62 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=46.9
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+...+++.++ -+|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.++.-.+.. +..++++
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----g~~~~A~ 148 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHA-LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW----RALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----TTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc----ccHHHHH
Confidence 444455555443 3556667766654 4556666777777777653 34567777777777766211 1246667
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
+++.+...
T Consensus 149 ~~~~~al~ 156 (568)
T 2vsy_A 149 AQVRAAVA 156 (568)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 123
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=42.07 E-value=79 Score=27.53 Aligned_cols=76 Identities=5% Similarity=-0.030 Sum_probs=56.8
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhc---c----CChHHHHHHHHHHHh--c---CChhHHHHHHHHHHhcCCCC
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFS---Y----SNLEAGVAYLDIATK--S---GHLGASYILGVIFLCKDDED 129 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~---~----~~~~~Gl~lL~~AA~--~---gh~~A~Y~~~ml~~c~G~~~ 129 (199)
+.+...+++.++ -.|+++.+..|...+.. . ++.+.++..+.+|.. + .+..+.+.+|.++.-.|..
T Consensus 196 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~- 274 (474)
T 4abn_A 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY- 274 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH-
Confidence 444566666544 57888999999876432 2 456899999999875 3 5789999999999988864
Q ss_pred CChhhHHHHHHHHHHHh
Q 038912 130 DDNESNQKGMQHLDKVY 146 (199)
Q Consensus 130 ~d~~~~~~g~~~~~~l~ 146 (199)
++++++|.+..
T Consensus 275 ------~~A~~~~~~al 285 (474)
T 4abn_A 275 ------GEALEGFSQAA 285 (474)
T ss_dssp ------HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH
Confidence 77778777765
No 124
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=41.16 E-value=98 Score=25.03 Aligned_cols=74 Identities=9% Similarity=0.051 Sum_probs=46.3
Q ss_pred cchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 65 KNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 65 ~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
.+...+++.++. .++++.+..|.. +...++.+.++..+.+|.. +.+..+.+.+|.++.-.|.. +++++
T Consensus 255 ~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~ 326 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHFPDAYCNLANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI-------EEAVR 326 (388)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-------HHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH-------HHHHH
Confidence 334556665543 456676666654 4556677778887777653 34667777777777766643 56666
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
++.+..
T Consensus 327 ~~~~al 332 (388)
T 1w3b_A 327 LYRKAL 332 (388)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666553
No 125
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=40.87 E-value=61 Score=23.95 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=53.1
Q ss_pred CcchHHHHHHHhc-CCccchHHHHHHHHhccCChHHHHHHHHHHHhcC--C-------hhHHHHHHHHHHhcCCCCCChh
Q 038912 64 HKNYSFLEKCRDS-GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSG--H-------LGASYILGVIFLCKDDEDDDNE 133 (199)
Q Consensus 64 ~~~~~FlkrC~~a-GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~g--h-------~~A~Y~~~ml~~c~G~~~~d~~ 133 (199)
+.+..++.+.++. .|+.+.+..|.. ++..++.+.++..+.+|..-. + ..+.+.+|.++.-.|..
T Consensus 22 ~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 95 (258)
T 3uq3_A 22 DEAIEHYNKAWELHKDITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL----- 95 (258)
T ss_dssp HHHHHHHHHHHHHSCCTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHH-HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH-----
Confidence 3444555554332 677777777755 567778899999999987532 2 57888899988888864
Q ss_pred hHHHHHHHHHHHhh
Q 038912 134 SNQKGMQHLDKVYR 147 (199)
Q Consensus 134 ~~~~g~~~~~~l~~ 147 (199)
+++++++.+...
T Consensus 96 --~~A~~~~~~a~~ 107 (258)
T 3uq3_A 96 --KKTIEYYQKSLT 107 (258)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHh
Confidence 677777776654
No 126
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=40.40 E-value=1.6e+02 Score=24.61 Aligned_cols=76 Identities=12% Similarity=0.245 Sum_probs=51.2
Q ss_pred CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+..++.+.++ ..++++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-------~~A 363 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQM-YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF-------TES 363 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHH
Confidence 4555566666654 3567777777754 4466777888888888754 34677888888888877754 666
Q ss_pred HHHHHHHh
Q 038912 139 MQHLDKVY 146 (199)
Q Consensus 139 ~~~~~~l~ 146 (199)
++++.+..
T Consensus 364 ~~~~~~~~ 371 (537)
T 3fp2_A 364 EAFFNETK 371 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 127
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=40.36 E-value=68 Score=24.11 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=46.8
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHH----------------HHHHHHhcCCCCCChhhHHHHH
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYI----------------LGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~----------------~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+++..+.+|+.. +..++.+.++.++.+|.. +.+.++.|. +|.+++-.|.. ++++
T Consensus 3 ~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~ 74 (208)
T 3urz_A 3 SVDEMLQKVSAA-IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY-------DKAY 74 (208)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred CHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH-------HHHH
Confidence 566677777654 577888999999999764 346778888 99999988864 7777
Q ss_pred HHHHHHh
Q 038912 140 QHLDKVY 146 (199)
Q Consensus 140 ~~~~~l~ 146 (199)
+.+.+..
T Consensus 75 ~~~~~al 81 (208)
T 3urz_A 75 LFYKELL 81 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=40.04 E-value=67 Score=28.33 Aligned_cols=77 Identities=6% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...+++.++ -.|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.|.+|.++...|.. +++
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-------~eA 93 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLA-YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-------RAA 93 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHH
Confidence 3555566666554 3567788888865 5677888999999999875 35789999999999988865 778
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
++++.+..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 129
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=39.75 E-value=93 Score=23.87 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=41.3
Q ss_pred chHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038912 66 NYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQH 141 (199)
Q Consensus 66 ~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~ 141 (199)
+..++++.++ ..++++.+..|.. ++..++.+.++..+.+|... .+..+.+.+|.++...|.. ++++++
T Consensus 40 A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~ 111 (327)
T 3cv0_A 40 AALAFEAVCQAAPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAALAS 111 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH-------HHHHHH
Confidence 3345555443 2355555555543 34455666777777665432 3566666666666666643 566666
Q ss_pred HHHHhh
Q 038912 142 LDKVYR 147 (199)
Q Consensus 142 ~~~l~~ 147 (199)
+.+...
T Consensus 112 ~~~~~~ 117 (327)
T 3cv0_A 112 LRAWLL 117 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 130
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=39.01 E-value=1e+02 Score=25.52 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=46.2
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 81 ALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 81 A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+.+..|.. ++..++.+.++..+.+|.. +.+..|.|-+|.+++..|.. ++++++|.+...
T Consensus 232 ~~~nla~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-------~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAAC-LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-------DSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHH-HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-------HHHHHHHHHTTC
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Confidence 55566654 5677788999999999754 45789999999999998865 788888888753
No 131
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=38.66 E-value=84 Score=23.56 Aligned_cols=45 Identities=4% Similarity=-0.184 Sum_probs=21.1
Q ss_pred CcchHHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHHh
Q 038912 64 HKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK 108 (199)
Q Consensus 64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~ 108 (199)
+.+..+++++++.......+...+...+..++.+.++..+.++..
T Consensus 128 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344456666554332222222222233444555666666655543
No 132
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=37.08 E-value=1.3e+02 Score=23.08 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=30.9
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKV 145 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l 145 (199)
++.+.+..|.. ++..++.+.++..+.++.. +.+..+.+.+|.+++-.|.. +++++++.+.
T Consensus 171 ~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~a 232 (327)
T 3cv0_A 171 DAQLHASLGVL-YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP-------QEALDAYNRA 232 (327)
T ss_dssp CHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHH
Confidence 44455554443 3344555666666666542 23455566666666655543 4445555443
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=36.13 E-value=1.1e+02 Score=21.20 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=39.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 82 LYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 82 ~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
..-+|. .+|..++-+.++....+|.. +.+..+.+-+|++++-.|.. +++++++.+..
T Consensus 11 ~~~lG~-~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-------~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGN-AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-------AECVQFCEKAV 69 (127)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-------HHHHHHHHHHH
Confidence 334554 35667778888888888653 45677788888888887754 66666666554
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=35.94 E-value=80 Score=27.76 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912 63 WHKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG 138 (199)
Q Consensus 63 w~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g 138 (199)
++.+...+++.++. .|+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++..|.. +++
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A 110 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRV-RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA-------EAA 110 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-------HHH
Confidence 35556677776653 567888888875 5567788999999999764 45788999999999988864 788
Q ss_pred HHHHHHHhh
Q 038912 139 MQHLDKVYR 147 (199)
Q Consensus 139 ~~~~~~l~~ 147 (199)
++++.+...
T Consensus 111 ~~~~~~al~ 119 (568)
T 2vsy_A 111 AAAYTRAHQ 119 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 135
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=35.44 E-value=88 Score=26.88 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=52.9
Q ss_pred CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912 64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS----GHLGASYILGVIFLCKDDEDDDNESNQK 137 (199)
Q Consensus 64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~----gh~~A~Y~~~ml~~c~G~~~~d~~~~~~ 137 (199)
.+....|++.++. .++.+.++.| +.++..++.+.+++.+.+.... ++.+|....+-|++--|.. ++
T Consensus 83 ~~a~~~l~~l~~~~~~~~~~~~~la-~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~-------d~ 154 (310)
T 3mv2_B 83 TKNIEELENLLKDKQNSPYELYLLA-TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV-------ST 154 (310)
T ss_dssp TTCCHHHHHTTTTSCCCHHHHHHHH-HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH-------HH
T ss_pred ccHHHHHHHHHhcCCCCcHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH-------HH
Confidence 3345677776664 5677778777 5555679999999999998554 4678888888888887764 55
Q ss_pred HHHHHHHHh
Q 038912 138 GMQHLDKVY 146 (199)
Q Consensus 138 g~~~~~~l~ 146 (199)
+.+.+..+.
T Consensus 155 A~k~l~~~~ 163 (310)
T 3mv2_B 155 ASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=34.78 E-value=1.1e+02 Score=21.07 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--CC-------hhHHHHHHHHHHhcCCCCCC
Q 038912 63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GH-------LGASYILGVIFLCKDDEDDD 131 (199)
Q Consensus 63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh-------~~A~Y~~~ml~~c~G~~~~d 131 (199)
++.+..++.+.++ -.|+++.+..|.. ++..++-+.++..+.+|..- .+ +.+.+-+|.++...|..
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~--- 99 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAV-YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL--- 99 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHH-HHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH---
Confidence 3445556666554 4678888888875 56678889999999988642 12 24667778888877754
Q ss_pred hhhHHHHHHHHHHHh
Q 038912 132 NESNQKGMQHLDKVY 146 (199)
Q Consensus 132 ~~~~~~g~~~~~~l~ 146 (199)
+++++++.+..
T Consensus 100 ----~~A~~~~~kal 110 (127)
T 4gcn_A 100 ----SLAVQWFHRSL 110 (127)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH
Confidence 77888877654
No 137
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=34.78 E-value=64 Score=25.08 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=62.1
Q ss_pred HhcCCccchHHHHHHHHhccC---------ChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCC----hhhHHHH
Q 038912 74 RDSGNPEALYKQGVVEFFSYS---------NLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDD----NESNQKG 138 (199)
Q Consensus 74 ~~aGNpeA~Y~~Gm~~~f~~~---------~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d----~~~~~~g 138 (199)
.+-+++++.+..|..+.-.-+ ..+.++..+.+|.. +.+..|.|-+|..+...|...+| .+.-+++
T Consensus 31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA 110 (158)
T 1zu2_A 31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence 456799999999985543211 24688999998753 46899999999999865521111 1356888
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHHH--Hhhhhhc
Q 038912 139 MQHLDKVYRAK-RLSQCRNKLQSIT--QTLWKNY 169 (199)
Q Consensus 139 ~~~~~~l~~~r-~~~~~r~~ik~~~--~~~W~~~ 169 (199)
+++|.+..... .-..+++-++-.- +++|+..
T Consensus 111 ~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~ 144 (158)
T 1zu2_A 111 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 144 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCHhccCcc
Confidence 88888877543 3445555554222 2566543
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.33 E-value=83 Score=25.39 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=44.0
Q ss_pred CCccchHHHHHHHHhccCC-hHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 038912 77 GNPEALYKQGVVEFFSYSN-LEAGVAYLDIATK----SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDK 144 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~-~~~Gl~lL~~AA~----~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~ 144 (199)
.+|....+..+..++...+ .+.++..+.+... +.+..+.+.+|.++.-.|.. +++++++.+
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~-------~~Al~~l~~ 126 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP-------DAALRTLHQ 126 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH-------HHHHHHHTT
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHhC
Confidence 3444555556666666664 6899999998653 55889999999999988864 666666554
No 139
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=33.12 E-value=1.1e+02 Score=20.59 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=46.4
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHhc---------CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATKS---------GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~---------gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+++-||-.|. .+|..++-..++.-+..|... ......+.+|...+-.|.. ++++.++.....
T Consensus 4 sa~dc~~lG~-~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~-------~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGK-VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL-------DKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHh
Confidence 5677888885 456777888899898888763 2466677888888888854 778888877753
No 140
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=32.66 E-value=1.4e+02 Score=22.56 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=55.3
Q ss_pred CCcchHHHHHHHhc--CC---ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCCh---hHHHHHHHHHHhc-------
Q 038912 63 WHKNYSFLEKCRDS--GN---PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHL---GASYILGVIFLCK------- 125 (199)
Q Consensus 63 w~~~~~FlkrC~~a--GN---peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~---~A~Y~~~ml~~c~------- 125 (199)
|+.+...|++.++. .+ ++|.|..|. .++..++-+.++..+.++.. +.+. .|.|.+|++++-.
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~-~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~ 98 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIY-AYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG 98 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence 34555666776653 23 368888884 56788899999999999764 3344 3888899887632
Q ss_pred ----CCCCCChhhHHHHHHHHHHHhh
Q 038912 126 ----DDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 126 ----G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
+....|....+++++.|.++..
T Consensus 99 ~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 99 FFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp ---------CCHHHHHHHHHHHHHHT
T ss_pred hhccchhhcCcHHHHHHHHHHHHHHH
Confidence 1111233467888888888864
No 141
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=32.15 E-value=1.8e+02 Score=23.11 Aligned_cols=30 Identities=3% Similarity=-0.061 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHhcC
Q 038912 97 EAGVAYLDIATK---SGHLGASYILGVIFLCKD 126 (199)
Q Consensus 97 ~~Gl~lL~~AA~---~gh~~A~Y~~~ml~~c~G 126 (199)
+.++..+.+|.. +.+..+.+.+|.++.-.|
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 455555555543 224445555555555444
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=31.61 E-value=69 Score=26.48 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=27.3
Q ss_pred CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcC
Q 038912 77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKD 126 (199)
Q Consensus 77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G 126 (199)
.|+.+.|..|.. ++..++.+.++..+.+|.. +.+..|.+.++.++.-.|
T Consensus 228 ~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 228 NNEKGLSRRGEA-HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 456666666654 3445555666666666532 345556666666555444
No 143
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=29.22 E-value=1.4e+02 Score=24.01 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=51.9
Q ss_pred CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912 64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM 139 (199)
Q Consensus 64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~ 139 (199)
+.+..++++.++ ..|+++.+..|.. ++..++.+.++.++.+|.. +.+..+.+.+|.++.-.|.. ++++
T Consensus 50 ~~a~~~~~~a~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~ 121 (388)
T 1w3b_A 50 DRSAHFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM-------EGAV 121 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS-------SHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH-------HHHH
Confidence 444556666444 3456677777754 4566777888888888753 45677888888888888865 5666
Q ss_pred HHHHHHhh
Q 038912 140 QHLDKVYR 147 (199)
Q Consensus 140 ~~~~~l~~ 147 (199)
+.+.+...
T Consensus 122 ~~~~~al~ 129 (388)
T 1w3b_A 122 QAYVSALQ 129 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=27.84 E-value=2.3e+02 Score=23.25 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=47.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912 80 EALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR 147 (199)
Q Consensus 80 eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~ 147 (199)
.+.+..|. .++..++.+.++..+.+|.. +.+..|.|.+|.+++..|.. ++++++|.+...
T Consensus 197 ~~~~nla~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~ 258 (336)
T 1p5q_A 197 ASHLNLAM-CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-------ELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHH
Confidence 56666776 45667888999999999764 45899999999999999965 778888877653
No 145
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=26.11 E-value=2.4e+02 Score=22.25 Aligned_cols=35 Identities=3% Similarity=-0.069 Sum_probs=17.9
Q ss_pred cCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 038912 93 YSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDD 127 (199)
Q Consensus 93 ~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~ 127 (199)
.++.+.+...+.+|.. +.+..+.+.++.++.-.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 218 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 4555555555555532 3345555555555554443
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=25.87 E-value=1.2e+02 Score=21.48 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--------cCChhHHHHHHHHHHhcCCC
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--------SGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--------~gh~~A~Y~~~ml~~c~G~~ 128 (199)
+.+.+..|... +..++.+.++.++.+|.. .....+.+.+|.+..-.|..
T Consensus 26 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 26 SGARFMLGYVY-AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45566666554 345667788888877764 13456777788888877754
No 147
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=25.35 E-value=2.6e+02 Score=22.67 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=51.5
Q ss_pred cchHHHHHHHhc--CCcc----chHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912 65 KNYSFLEKCRDS--GNPE----ALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQ 136 (199)
Q Consensus 65 ~~~~FlkrC~~a--GNpe----A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~ 136 (199)
.+...+.+.++. .|++ +.+..| ..++..++.+.++.++.+|. .+.+..+.+.+|.++.-.|.. +
T Consensus 275 ~A~~~~~~~l~~~p~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-------~ 346 (450)
T 2y4t_A 275 DATSKYESVMKTEPSIAEYTVRSKERIC-HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY-------D 346 (450)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------H
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH-------H
Confidence 334455555442 2322 334444 44667788899999999986 355789999999999988864 7
Q ss_pred HHHHHHHHHhh
Q 038912 137 KGMQHLDKVYR 147 (199)
Q Consensus 137 ~g~~~~~~l~~ 147 (199)
++++++.+...
T Consensus 347 ~A~~~~~~al~ 357 (450)
T 2y4t_A 347 EAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 78888887764
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=25.14 E-value=1.6e+02 Score=19.92 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912 79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY 146 (199)
Q Consensus 79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~ 146 (199)
+++.+..|.. ++..++.+.++..+.+|.. +.+..+.+.+|.+++-.|.. +++++++.+..
T Consensus 13 ~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~a~ 74 (166)
T 1a17_A 13 AEELKTQAND-YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-------GYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Confidence 4566677765 4567888999999998764 34688899999999988864 77777777665
No 149
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=24.88 E-value=82 Score=21.77 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=22.5
Q ss_pred cCCCCChHHHHHHHHHhccC--C---HHHHHHH
Q 038912 6 SIFSLPDELLSEILARVGAC--S---LDDLLNA 33 (199)
Q Consensus 6 ~~~~LpdDLlv~I~~kVA~~--s---~~DL~~~ 33 (199)
+++.||.||-..|.+-|.+. | +.+|++.
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 69999999999999999883 2 5556554
No 150
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.88 E-value=1.1e+02 Score=23.27 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=33.2
Q ss_pred CccchHHHHHHHHhccCChHHHHHHHHHHHh----------cCChhHHHHHHHHHHhcCCC
Q 038912 78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATK----------SGHLGASYILGVIFLCKDDE 128 (199)
Q Consensus 78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~----------~gh~~A~Y~~~ml~~c~G~~ 128 (199)
++++.+..|.. ++..++.+.++.++.+|.. .....+.+.+|.+..-.|..
T Consensus 26 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 85 (311)
T 3nf1_A 26 RLRTLHNLVIQ-YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY 85 (311)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 34455555544 4566777888888888765 22456777888888877754
No 151
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.83 E-value=84 Score=24.74 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=29.9
Q ss_pred hHHHHHHHhc-CCc--cchHHHHHHH-----Hhc--cCChHHHHHHHHHHHh
Q 038912 67 YSFLEKCRDS-GNP--EALYKQGVVE-----FFS--YSNLEAGVAYLDIATK 108 (199)
Q Consensus 67 ~~FlkrC~~a-GNp--eA~Y~~Gm~~-----~f~--~~~~~~Gl~lL~~AA~ 108 (199)
|.-|+-.|.. +++ +--+++||++ +++ .+|..++..+|++|..
T Consensus 52 HEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 52 HDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5556666644 456 7889999999 344 4566888888888864
No 152
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=23.80 E-value=2.4e+02 Score=23.26 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=53.6
Q ss_pred CcchHHHHHHHh-cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912 64 HKNYSFLEKCRD-SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ 140 (199)
Q Consensus 64 ~~~~~FlkrC~~-aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~ 140 (199)
+.+...+.+.++ .-|+.+.+..|. .++..++.+.++..+.+|.. +.+..|.+.+|.+++-.|.. +++++
T Consensus 23 ~~A~~~~~~al~~~p~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~ 94 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDPVFYSNLSA-CYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF-------ADAMF 94 (514)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-------HHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHhHHH-HHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH-------HHHHH
Confidence 344455555544 345666666664 45567888999999998763 45788999999999988865 77888
Q ss_pred HHHHHh
Q 038912 141 HLDKVY 146 (199)
Q Consensus 141 ~~~~l~ 146 (199)
.|.+..
T Consensus 95 ~~~~~~ 100 (514)
T 2gw1_A 95 DLSVLS 100 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 153
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=23.64 E-value=2.3e+02 Score=24.25 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=49.2
Q ss_pred CcchHHHHHHHhc-----CCcc----chHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCCh
Q 038912 64 HKNYSFLEKCRDS-----GNPE----ALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDN 132 (199)
Q Consensus 64 ~~~~~FlkrC~~a-----GNpe----A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~ 132 (199)
+.+..++++.++. .+|+ +.+..| ..++..++.+.++..+.++.. +.+..+.+.+|.++.-.|..
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---- 566 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLG-HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP---- 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----
Confidence 4445667766654 1454 333333 345566777888888888764 34677888888888777754
Q ss_pred hhHHHHHHHHHHHhh
Q 038912 133 ESNQKGMQHLDKVYR 147 (199)
Q Consensus 133 ~~~~~g~~~~~~l~~ 147 (199)
+++++++.+...
T Consensus 567 ---~~A~~~~~~~l~ 578 (597)
T 2xpi_A 567 ---GLAITHLHESLA 578 (597)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHh
Confidence 677777776654
No 154
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=22.12 E-value=2.7e+02 Score=21.34 Aligned_cols=76 Identities=9% Similarity=0.002 Sum_probs=52.8
Q ss_pred CcchHHHHHHHhcCC--cc----chHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhH
Q 038912 64 HKNYSFLEKCRDSGN--PE----ALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESN 135 (199)
Q Consensus 64 ~~~~~FlkrC~~aGN--pe----A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~ 135 (199)
+.+..++++.++... ++ +.+..| ..++..++.+.++..+.++.. +.+..+.+.+|.++...|..
T Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------- 322 (359)
T 3ieg_A 251 TDATSKYESVMKTEPSVAEYTVRSKERIC-HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY------- 322 (359)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-------
Confidence 444456666555332 22 122334 345667788999999999865 45789999999999998864
Q ss_pred HHHHHHHHHHhh
Q 038912 136 QKGMQHLDKVYR 147 (199)
Q Consensus 136 ~~g~~~~~~l~~ 147 (199)
+++++++.+...
T Consensus 323 ~~A~~~~~~a~~ 334 (359)
T 3ieg_A 323 DEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888888888764
No 155
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.46 E-value=1.6e+02 Score=24.02 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=41.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 038912 81 ALYKQGVVEFFSYSNLEAGVAYLDIATKS--------GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKV 145 (199)
Q Consensus 81 A~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--------gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l 145 (199)
+.|..|+. ++..++-+.++.++.+|..- ..+.+.|-+|.+..-.|.. .++++++.+.
T Consensus 103 ~~~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~-------~~A~~~~~~a 167 (378)
T 3q15_A 103 SLFFRGMY-EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT-------HVSMYHILQA 167 (378)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHH
T ss_pred HHHHHHHH-HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc-------HHHHHHHHHH
Confidence 46677864 56678889999999998643 3467889999999988865 5555555443
Done!