Query 038914
Match_columns 570
No_of_seqs 721 out of 3467
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 04:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.3E-66 9.3E-71 525.9 61.8 501 50-569 381-906 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-65 3E-70 522.2 62.3 481 72-569 367-873 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3E-64 6.6E-69 523.6 51.6 491 50-569 132-651 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 3.6E-63 7.9E-68 515.6 52.0 501 49-569 61-615 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-59 3.2E-64 477.0 55.0 461 50-540 98-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.5E-60 7.7E-65 481.5 50.3 468 73-570 85-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-33 4.5E-38 300.9 61.8 497 50-569 374-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-32 3.5E-37 294.0 60.6 496 50-568 306-828 (899)
9 PRK11447 cellulose synthase su 100.0 1.2E-26 2.7E-31 247.9 60.2 505 46-568 69-736 (1157)
10 PRK11447 cellulose synthase su 100.0 1.6E-26 3.4E-31 247.1 59.8 500 50-568 39-696 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.5E-25 3.3E-30 203.1 38.1 447 75-553 48-500 (966)
12 PRK09782 bacteriophage N4 rece 100.0 2E-23 4.4E-28 213.0 54.9 486 41-568 46-702 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 2.8E-25 6E-30 201.4 36.0 438 49-518 58-500 (966)
14 PRK09782 bacteriophage N4 rece 99.9 4.2E-21 9E-26 196.2 57.4 258 298-568 477-736 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-21 5.3E-26 194.8 49.4 397 119-537 129-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 3.2E-21 7E-26 184.4 46.4 472 51-537 176-745 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1E-20 2.2E-25 190.4 51.8 257 241-502 307-571 (615)
18 KOG2002 TPR-containing nuclear 99.9 6.7E-20 1.4E-24 175.5 45.2 491 55-567 146-740 (1018)
19 PRK11788 tetratricopeptide rep 99.9 1.6E-21 3.6E-26 186.6 35.0 300 238-544 45-354 (389)
20 PRK15174 Vi polysaccharide exp 99.9 6.6E-20 1.4E-24 183.6 47.2 332 155-502 45-381 (656)
21 PRK15174 Vi polysaccharide exp 99.9 6.1E-20 1.3E-24 183.8 46.2 323 51-398 54-382 (656)
22 PRK10049 pgaA outer membrane p 99.9 1.8E-19 4E-24 184.4 50.5 405 73-501 13-455 (765)
23 PRK11788 tetratricopeptide rep 99.9 5.9E-21 1.3E-25 182.8 35.4 303 158-473 41-353 (389)
24 PRK10049 pgaA outer membrane p 99.9 5.5E-19 1.2E-23 181.0 50.4 404 130-553 28-470 (765)
25 PRK14574 hmsH outer membrane p 99.9 1.8E-18 4E-23 173.4 51.9 440 49-513 44-522 (822)
26 PRK14574 hmsH outer membrane p 99.9 9.9E-18 2.1E-22 168.2 52.9 442 74-544 33-518 (822)
27 KOG2003 TPR repeat-containing 99.9 3.9E-19 8.5E-24 156.0 34.4 479 55-560 217-711 (840)
28 KOG1915 Cell cycle control pro 99.9 9.7E-17 2.1E-21 141.8 47.1 462 46-535 80-583 (677)
29 KOG0495 HAT repeat protein [RN 99.9 2.5E-15 5.4E-20 138.3 50.0 482 52-567 389-875 (913)
30 KOG4422 Uncharacterized conser 99.8 8.7E-16 1.9E-20 134.2 43.0 309 73-399 114-464 (625)
31 KOG2076 RNA polymerase III tra 99.8 5.6E-15 1.2E-19 141.3 50.6 466 51-536 151-694 (895)
32 KOG0495 HAT repeat protein [RN 99.8 1.8E-14 3.9E-19 132.7 47.8 452 88-568 389-842 (913)
33 KOG2003 TPR repeat-containing 99.8 2.9E-17 6.3E-22 144.4 28.3 458 76-568 202-685 (840)
34 KOG4422 Uncharacterized conser 99.8 3E-15 6.6E-20 130.9 40.3 430 131-567 129-620 (625)
35 KOG1915 Cell cycle control pro 99.8 5.1E-14 1.1E-18 124.9 45.4 462 60-551 60-548 (677)
36 KOG0547 Translocase of outer m 99.8 1.2E-14 2.7E-19 129.3 35.0 431 38-501 114-565 (606)
37 KOG1155 Anaphase-promoting com 99.8 5.3E-13 1.1E-17 118.4 44.5 380 149-554 161-551 (559)
38 KOG2076 RNA polymerase III tra 99.8 8.2E-14 1.8E-18 133.5 39.4 365 126-501 148-554 (895)
39 KOG0547 Translocase of outer m 99.7 2E-14 4.4E-19 128.0 31.2 392 119-535 117-564 (606)
40 KOG1155 Anaphase-promoting com 99.7 3.1E-13 6.8E-18 119.8 37.0 358 190-564 161-528 (559)
41 COG2956 Predicted N-acetylgluc 99.7 1E-14 2.2E-19 123.0 26.3 298 46-361 42-346 (389)
42 PRK10747 putative protoheme IX 99.7 1.6E-13 3.5E-18 129.8 35.6 284 240-536 96-389 (398)
43 TIGR00540 hemY_coli hemY prote 99.7 1.1E-13 2.3E-18 131.8 33.9 291 239-535 95-397 (409)
44 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.8E-18 130.4 34.2 289 163-464 95-396 (409)
45 KOG1173 Anaphase-promoting com 99.7 3.9E-12 8.5E-17 115.9 40.3 459 78-556 19-535 (611)
46 PF13429 TPR_15: Tetratricopep 99.7 2.1E-16 4.6E-21 142.9 13.4 261 268-535 13-275 (280)
47 PRK10747 putative protoheme IX 99.7 4.2E-13 9E-18 127.0 35.2 251 163-430 129-388 (398)
48 PF13429 TPR_15: Tetratricopep 99.7 2.9E-16 6.3E-21 142.0 12.9 262 198-466 13-276 (280)
49 KOG1126 DNA-binding cell divis 99.7 5.9E-14 1.3E-18 130.2 26.1 285 54-362 334-620 (638)
50 KOG3785 Uncharacterized conser 99.7 1.1E-11 2.4E-16 106.3 37.4 454 53-558 36-536 (557)
51 COG3071 HemY Uncharacterized e 99.7 1.7E-12 3.8E-17 113.3 32.8 287 240-536 96-389 (400)
52 COG2956 Predicted N-acetylgluc 99.7 1.5E-12 3.2E-17 110.2 30.7 288 241-535 48-345 (389)
53 KOG1126 DNA-binding cell divis 99.7 7.7E-14 1.7E-18 129.5 24.7 282 209-501 335-619 (638)
54 KOG2047 mRNA splicing factor [ 99.7 1.4E-10 3.1E-15 107.4 45.3 162 42-222 105-277 (835)
55 KOG1173 Anaphase-promoting com 99.6 6.6E-12 1.4E-16 114.4 35.9 430 73-518 80-532 (611)
56 COG3071 HemY Uncharacterized e 99.6 4.2E-12 9.1E-17 111.0 32.8 293 205-507 96-395 (400)
57 KOG2047 mRNA splicing factor [ 99.6 3.5E-10 7.6E-15 104.9 45.6 459 74-551 101-630 (835)
58 KOG3785 Uncharacterized conser 99.6 2.8E-11 6.1E-16 103.9 35.6 427 82-546 29-497 (557)
59 KOG1156 N-terminal acetyltrans 99.6 4.9E-11 1.1E-15 110.7 39.0 456 52-534 20-508 (700)
60 KOG1156 N-terminal acetyltrans 99.6 3.3E-10 7.2E-15 105.3 42.1 431 41-500 43-509 (700)
61 KOG4162 Predicted calmodulin-b 99.6 2.1E-09 4.4E-14 102.2 44.5 458 86-566 238-777 (799)
62 PRK12370 invasion protein regu 99.6 2.9E-12 6.4E-17 126.8 27.1 257 89-362 275-535 (553)
63 KOG2376 Signal recognition par 99.6 1.8E-09 3.9E-14 99.4 41.8 447 50-535 23-518 (652)
64 KOG1129 TPR repeat-containing 99.5 1.1E-12 2.3E-17 111.1 19.0 235 300-542 225-461 (478)
65 KOG1174 Anaphase-promoting com 99.5 1.2E-09 2.5E-14 96.1 36.8 293 259-562 228-523 (564)
66 PF12569 NARP1: NMDA receptor- 99.5 1.1E-09 2.3E-14 104.7 38.5 293 51-361 16-333 (517)
67 KOG2376 Signal recognition par 99.5 3.5E-09 7.5E-14 97.6 38.9 401 129-557 24-506 (652)
68 KOG1174 Anaphase-promoting com 99.5 2.9E-09 6.2E-14 93.7 36.7 424 51-507 55-503 (564)
69 PF12569 NARP1: NMDA receptor- 99.5 1.5E-09 3.2E-14 103.8 38.1 295 78-396 7-333 (517)
70 PRK12370 invasion protein regu 99.5 4.2E-11 9.1E-16 118.7 27.9 218 131-361 275-501 (553)
71 KOG1129 TPR repeat-containing 99.5 5.3E-12 1.1E-16 107.0 17.9 230 332-567 222-453 (478)
72 KOG0624 dsRNA-activated protei 99.5 1.1E-10 2.3E-15 99.9 25.8 302 40-362 39-370 (504)
73 KOG0548 Molecular co-chaperone 99.5 5.5E-10 1.2E-14 101.8 31.3 439 43-516 6-467 (539)
74 KOG4162 Predicted calmodulin-b 99.5 1.1E-09 2.5E-14 103.9 34.1 126 406-535 653-781 (799)
75 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.6E-15 102.2 26.3 200 333-536 31-231 (234)
76 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 3E-15 102.7 25.6 200 152-361 31-231 (234)
77 COG3063 PilF Tfp pilus assembl 99.4 1.3E-10 2.9E-15 94.1 21.3 199 40-257 36-236 (250)
78 KOG0548 Molecular co-chaperone 99.4 1.1E-08 2.3E-13 93.6 32.5 421 81-554 8-471 (539)
79 COG3063 PilF Tfp pilus assembl 99.4 5.3E-10 1.1E-14 90.7 21.0 196 336-535 38-234 (250)
80 KOG1840 Kinesin light chain [C 99.3 1.6E-10 3.4E-15 108.9 20.4 248 75-325 199-477 (508)
81 PRK11189 lipoprotein NlpI; Pro 99.3 2.5E-09 5.5E-14 96.9 27.6 218 131-363 40-266 (296)
82 KOG1127 TPR repeat-containing 99.3 1E-08 2.2E-13 100.2 32.3 482 50-568 469-992 (1238)
83 KOG4318 Bicoid mRNA stability 99.3 3.5E-10 7.6E-15 108.8 21.7 273 215-523 12-286 (1088)
84 KOG4340 Uncharacterized conser 99.3 3E-09 6.5E-14 89.5 24.0 187 51-260 22-210 (459)
85 cd05804 StaR_like StaR_like; a 99.3 2.9E-08 6.2E-13 93.9 33.2 273 73-361 4-292 (355)
86 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.5E-14 102.2 24.0 206 152-358 199-434 (508)
87 KOG4318 Bicoid mRNA stability 99.3 5E-09 1.1E-13 101.1 27.2 90 139-246 12-101 (1088)
88 KOG0624 dsRNA-activated protei 99.3 7.4E-08 1.6E-12 83.0 31.0 310 123-467 44-370 (504)
89 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-08 2.4E-13 92.8 28.2 119 277-397 40-161 (296)
90 KOG1127 TPR repeat-containing 99.3 5.5E-08 1.2E-12 95.3 32.6 197 42-255 495-698 (1238)
91 KOG3617 WD40 and TPR repeat-co 99.2 5.2E-07 1.1E-11 86.8 37.4 316 49-430 738-1107(1416)
92 cd05804 StaR_like StaR_like; a 99.2 7.3E-08 1.6E-12 91.2 31.5 296 52-362 19-336 (355)
93 KOG3616 Selective LIM binding 99.2 2.8E-07 6.1E-12 87.6 32.6 109 305-426 739-847 (1636)
94 PF13041 PPR_2: PPR repeat fam 99.2 1.2E-10 2.6E-15 73.2 6.5 48 471-518 1-48 (50)
95 PF13041 PPR_2: PPR repeat fam 99.2 1.2E-10 2.6E-15 73.2 6.4 49 191-239 1-49 (50)
96 KOG1125 TPR repeat-containing 99.1 6.9E-09 1.5E-13 95.6 19.2 223 48-291 294-526 (579)
97 PRK04841 transcriptional regul 99.1 1.2E-06 2.5E-11 94.2 39.3 338 200-537 381-760 (903)
98 KOG4340 Uncharacterized conser 99.1 3.2E-07 7E-12 77.6 26.3 353 78-465 13-373 (459)
99 KOG3617 WD40 and TPR repeat-co 99.1 6.4E-06 1.4E-10 79.7 37.8 172 84-289 809-993 (1416)
100 PRK04841 transcriptional regul 99.1 1.4E-06 3.1E-11 93.5 38.4 341 127-467 384-760 (903)
101 KOG1125 TPR repeat-containing 99.1 3.1E-08 6.7E-13 91.5 21.6 216 273-498 295-523 (579)
102 KOG3616 Selective LIM binding 99.1 8.2E-07 1.8E-11 84.5 30.6 191 342-566 715-905 (1636)
103 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.7E-13 90.8 17.1 150 341-501 110-264 (290)
104 KOG2053 Mitochondrial inherita 99.0 2.6E-05 5.6E-10 76.5 48.6 225 50-293 20-256 (932)
105 PLN02789 farnesyltranstransfer 99.0 8E-07 1.7E-11 80.5 26.8 207 51-275 49-267 (320)
106 PF04733 Coatomer_E: Coatomer 99.0 3.5E-08 7.6E-13 88.0 17.4 255 271-543 9-269 (290)
107 KOG0985 Vesicle coat protein c 99.0 3E-05 6.5E-10 76.9 37.5 115 298-427 1104-1218(1666)
108 KOG0985 Vesicle coat protein c 99.0 4.2E-05 9E-10 76.0 37.7 114 229-357 1105-1218(1666)
109 KOG1128 Uncharacterized conser 99.0 5.7E-07 1.2E-11 85.6 24.3 215 300-536 400-615 (777)
110 KOG1128 Uncharacterized conser 98.9 4E-07 8.7E-12 86.7 22.7 217 264-501 399-615 (777)
111 KOG1914 mRNA cleavage and poly 98.9 4.5E-05 9.7E-10 70.6 42.1 456 63-558 10-525 (656)
112 TIGR03302 OM_YfiO outer membra 98.9 1.1E-07 2.3E-12 84.0 17.1 186 43-256 37-231 (235)
113 PLN02789 farnesyltranstransfer 98.9 4.4E-06 9.5E-11 75.7 26.6 208 161-380 46-267 (320)
114 KOG1070 rRNA processing protei 98.9 2.1E-06 4.5E-11 87.7 26.4 222 59-296 1444-1667(1710)
115 KOG1070 rRNA processing protei 98.9 2.2E-06 4.9E-11 87.4 26.6 203 300-506 1460-1667(1710)
116 PRK15179 Vi polysaccharide bio 98.9 1.1E-06 2.4E-11 87.9 24.1 173 39-234 56-228 (694)
117 PRK10370 formate-dependent nit 98.8 2.7E-07 5.7E-12 77.7 15.4 120 51-182 51-174 (198)
118 KOG3081 Vesicle coat complex C 98.8 6E-06 1.3E-10 69.1 22.0 250 270-536 15-270 (299)
119 COG5010 TadD Flp pilus assembl 98.8 2.2E-06 4.8E-11 71.7 19.5 159 372-535 70-229 (257)
120 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.2E-09 67.3 38.3 407 149-568 17-497 (656)
121 PRK10370 formate-dependent nit 98.8 2.1E-06 4.5E-11 72.4 19.8 119 416-537 52-173 (198)
122 COG5010 TadD Flp pilus assembl 98.8 2.4E-06 5.2E-11 71.5 19.1 158 402-565 66-224 (257)
123 TIGR03302 OM_YfiO outer membra 98.8 2.5E-06 5.4E-11 75.2 20.8 189 73-292 31-232 (235)
124 PRK15179 Vi polysaccharide bio 98.7 5.1E-06 1.1E-10 83.3 23.4 118 131-257 100-217 (694)
125 PRK14720 transcript cleavage f 98.7 2.6E-05 5.6E-10 79.1 27.5 171 72-292 28-198 (906)
126 PRK14720 transcript cleavage f 98.7 1.4E-05 3E-10 81.0 25.3 233 151-414 30-268 (906)
127 KOG3081 Vesicle coat complex C 98.7 2.8E-05 6.2E-10 65.2 22.2 151 340-501 115-270 (299)
128 PRK15359 type III secretion sy 98.6 2.9E-06 6.2E-11 67.5 15.9 108 138-257 14-121 (144)
129 PRK15359 type III secretion sy 98.6 4.3E-06 9.3E-11 66.5 16.4 94 406-501 27-120 (144)
130 KOG3060 Uncharacterized conser 98.6 4.6E-05 1E-09 63.5 22.3 188 310-502 24-220 (289)
131 KOG2053 Mitochondrial inherita 98.6 0.00077 1.7E-08 66.7 44.6 195 49-260 53-258 (932)
132 KOG3060 Uncharacterized conser 98.6 7.4E-05 1.6E-09 62.3 21.6 188 89-293 26-221 (289)
133 TIGR02552 LcrH_SycD type III s 98.5 5E-06 1.1E-10 66.0 14.5 92 442-535 21-112 (135)
134 TIGR02552 LcrH_SycD type III s 98.5 5.3E-06 1.2E-10 65.8 14.2 120 390-514 5-124 (135)
135 COG4783 Putative Zn-dependent 98.5 2.7E-05 5.8E-10 71.3 19.9 150 73-257 304-454 (484)
136 COG4783 Putative Zn-dependent 98.5 9.8E-05 2.1E-09 67.8 22.9 162 371-553 309-472 (484)
137 KOG0550 Molecular chaperone (D 98.5 9.8E-05 2.1E-09 66.1 22.1 268 40-327 50-350 (486)
138 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.4E-12 51.9 4.1 32 503-534 2-33 (34)
139 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 52.0 3.8 32 468-499 2-33 (34)
140 KOG0553 TPR repeat-containing 98.3 3.6E-06 7.9E-11 71.9 9.7 114 35-160 77-190 (304)
141 PF09976 TPR_21: Tetratricopep 98.3 6.1E-05 1.3E-09 60.2 15.2 115 416-533 24-143 (145)
142 KOG2041 WD40 repeat protein [G 98.3 0.0029 6.4E-08 60.9 27.7 211 73-323 690-903 (1189)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5E-05 1.1E-09 70.4 15.7 119 374-499 175-294 (395)
144 PF09976 TPR_21: Tetratricopep 98.2 2.8E-05 6.1E-10 62.2 12.5 121 51-178 23-144 (145)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00013 2.9E-09 67.6 17.7 125 336-466 172-296 (395)
146 PF07079 DUF1347: Protein of u 98.2 0.0047 1E-07 56.5 41.8 464 43-548 10-530 (549)
147 PF14559 TPR_19: Tetratricopep 98.2 3.9E-06 8.4E-11 57.0 4.9 64 50-117 2-65 (68)
148 PRK10866 outer membrane biogen 98.1 0.0007 1.5E-08 59.1 19.5 59 49-107 42-101 (243)
149 KOG1130 Predicted G-alpha GTPa 98.1 5.7E-06 1.2E-10 73.5 6.5 275 45-326 23-343 (639)
150 PF14938 SNAP: Soluble NSF att 98.1 0.00026 5.6E-09 64.0 16.6 93 200-292 121-225 (282)
151 COG4700 Uncharacterized protei 98.1 0.0013 2.9E-08 52.2 17.9 148 54-219 71-219 (251)
152 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.0088 1.9E-07 54.7 36.3 145 403-553 397-545 (660)
153 KOG1130 Predicted G-alpha GTPa 98.1 5.9E-05 1.3E-09 67.3 11.3 275 82-361 24-343 (639)
154 KOG0550 Molecular chaperone (D 98.1 0.0037 8.1E-08 56.4 22.2 262 124-397 56-350 (486)
155 PF13432 TPR_16: Tetratricopep 98.0 3E-06 6.5E-11 56.9 2.6 57 49-109 7-63 (65)
156 PF12895 Apc3: Anaphase-promot 98.0 8.7E-06 1.9E-10 58.0 4.5 83 52-143 2-84 (84)
157 PRK15363 pathogenicity island 98.0 0.00049 1.1E-08 53.9 14.1 96 154-257 37-132 (157)
158 KOG0553 TPR repeat-containing 98.0 0.0001 2.2E-09 63.3 11.1 98 376-477 89-186 (304)
159 PRK10866 outer membrane biogen 98.0 0.0055 1.2E-07 53.6 22.2 187 73-289 30-238 (243)
160 PRK15363 pathogenicity island 98.0 0.00069 1.5E-08 53.1 14.6 94 407-502 39-132 (157)
161 PLN03088 SGT1, suppressor of 98.0 0.00022 4.7E-09 66.5 14.3 97 410-510 9-105 (356)
162 COG4235 Cytochrome c biogenesi 98.0 0.00049 1.1E-08 59.7 14.9 121 53-182 136-257 (287)
163 TIGR00756 PPR pentatricopeptid 98.0 1.8E-05 4E-10 45.2 4.5 33 475-507 2-34 (35)
164 KOG2041 WD40 repeat protein [G 98.0 0.021 4.6E-07 55.3 26.6 204 149-393 689-903 (1189)
165 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.5E-09 66.1 14.0 123 364-486 62-186 (429)
166 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00033 7.2E-09 53.9 12.9 93 441-537 5-105 (119)
167 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 44.7 4.3 32 475-506 3-34 (34)
168 PLN03088 SGT1, suppressor of 97.9 9.7E-05 2.1E-09 68.9 11.4 91 46-147 9-100 (356)
169 PF12895 Apc3: Anaphase-promot 97.9 2.3E-05 4.9E-10 55.8 5.4 81 130-218 2-83 (84)
170 cd00189 TPR Tetratricopeptide 97.9 0.00019 4.2E-09 52.6 10.9 92 442-535 4-95 (100)
171 cd00189 TPR Tetratricopeptide 97.9 0.00022 4.8E-09 52.3 11.2 94 155-256 3-96 (100)
172 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00051 1.1E-08 52.9 13.5 95 405-502 4-105 (119)
173 PF14938 SNAP: Soluble NSF att 97.9 5.9E-05 1.3E-09 68.0 9.1 179 40-222 36-225 (282)
174 PRK02603 photosystem I assembl 97.9 0.00067 1.5E-08 56.2 14.6 101 73-181 33-149 (172)
175 PRK10153 DNA-binding transcrip 97.9 0.0016 3.5E-08 63.6 19.0 141 72-222 334-482 (517)
176 TIGR00756 PPR pentatricopeptid 97.9 3.2E-05 6.8E-10 44.1 4.5 34 510-543 2-35 (35)
177 PF05843 Suf: Suppressor of fo 97.9 0.00039 8.5E-09 62.4 13.3 129 370-501 3-135 (280)
178 COG4700 Uncharacterized protei 97.8 0.0093 2E-07 47.6 19.1 157 158-324 62-219 (251)
179 PF13812 PPR_3: Pentatricopept 97.8 4.1E-05 9E-10 43.3 4.4 33 509-541 2-34 (34)
180 CHL00033 ycf3 photosystem I as 97.8 0.00051 1.1E-08 56.7 12.6 118 54-177 14-138 (168)
181 CHL00033 ycf3 photosystem I as 97.8 0.00054 1.2E-08 56.5 12.4 93 439-533 36-138 (168)
182 PF12688 TPR_5: Tetratrico pep 97.8 0.00052 1.1E-08 51.8 10.9 99 77-180 3-103 (120)
183 PRK10153 DNA-binding transcrip 97.8 0.0024 5.2E-08 62.4 18.4 62 473-536 420-481 (517)
184 COG4105 ComL DNA uptake lipopr 97.8 0.0046 9.9E-08 52.6 17.3 173 42-220 37-231 (254)
185 PF13525 YfiO: Outer membrane 97.8 0.00043 9.3E-09 58.9 11.7 163 45-213 11-198 (203)
186 PF10037 MRP-S27: Mitochondria 97.8 0.00064 1.4E-08 63.5 13.4 124 398-521 61-186 (429)
187 PRK02603 photosystem I assembl 97.7 0.0018 3.9E-08 53.6 14.5 88 405-493 37-126 (172)
188 PF08631 SPO22: Meiosis protei 97.7 0.029 6.2E-07 50.6 23.1 168 86-262 4-191 (278)
189 PF13414 TPR_11: TPR repeat; P 97.7 2.2E-05 4.8E-10 53.4 2.3 61 42-104 6-67 (69)
190 COG4235 Cytochrome c biogenesi 97.7 0.0034 7.4E-08 54.6 15.1 101 435-537 153-256 (287)
191 PF05843 Suf: Suppressor of fo 97.7 0.0019 4.1E-08 58.1 14.4 142 334-480 2-147 (280)
192 PF13525 YfiO: Outer membrane 97.6 0.005 1.1E-07 52.5 15.9 68 74-146 4-71 (203)
193 PF12688 TPR_5: Tetratrico pep 97.6 0.0048 1E-07 46.7 13.8 87 411-499 9-101 (120)
194 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.5E-08 47.9 9.8 79 197-275 29-116 (120)
195 KOG1258 mRNA processing protei 97.6 0.084 1.8E-06 50.7 35.5 134 76-222 46-180 (577)
196 PF13432 TPR_16: Tetratricopep 97.5 0.00039 8.5E-09 46.5 6.6 54 447-501 6-59 (65)
197 PF04840 Vps16_C: Vps16, C-ter 97.5 0.066 1.4E-06 48.8 26.4 126 404-555 178-303 (319)
198 PF13371 TPR_9: Tetratricopept 97.5 0.00049 1.1E-08 47.3 7.0 60 50-113 6-65 (73)
199 PF01535 PPR: PPR repeat; Int 97.5 0.00015 3.2E-09 39.8 3.6 26 476-501 3-28 (31)
200 PF08579 RPM2: Mitochondrial r 97.5 0.0019 4.1E-08 46.9 9.7 76 480-555 32-116 (120)
201 PRK10803 tol-pal system protei 97.5 0.00057 1.2E-08 60.2 8.6 90 52-146 156-246 (263)
202 PF13414 TPR_11: TPR repeat; P 97.5 0.00043 9.4E-09 47.0 6.2 61 474-535 4-65 (69)
203 COG3898 Uncharacterized membra 97.5 0.077 1.7E-06 48.0 31.4 286 241-541 97-396 (531)
204 PF14559 TPR_19: Tetratricopep 97.5 0.00084 1.8E-08 45.4 7.5 51 415-466 3-53 (68)
205 COG3118 Thioredoxin domain-con 97.4 0.013 2.8E-07 50.9 15.7 153 45-213 140-292 (304)
206 COG3898 Uncharacterized membra 97.4 0.085 1.8E-06 47.7 31.4 292 45-362 90-392 (531)
207 KOG2280 Vacuolar assembly/sort 97.4 0.14 2.9E-06 50.6 23.8 126 198-325 442-573 (829)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0025 5.3E-08 59.2 11.9 63 40-104 76-141 (453)
209 KOG4555 TPR repeat-containing 97.4 0.001 2.2E-08 49.3 7.5 97 45-147 49-145 (175)
210 PF01535 PPR: PPR repeat; Int 97.4 0.00026 5.7E-09 38.8 3.6 30 510-539 2-31 (31)
211 KOG2796 Uncharacterized conser 97.4 0.07 1.5E-06 45.4 19.0 59 337-395 181-239 (366)
212 PRK10803 tol-pal system protei 97.4 0.0069 1.5E-07 53.4 13.7 84 449-536 154-245 (263)
213 PF13424 TPR_12: Tetratricopep 97.4 0.00029 6.2E-09 49.3 4.3 69 75-144 5-73 (78)
214 KOG2280 Vacuolar assembly/sort 97.3 0.21 4.6E-06 49.3 35.9 377 114-534 387-796 (829)
215 PF07079 DUF1347: Protein of u 97.3 0.15 3.2E-06 47.3 41.5 446 81-568 12-520 (549)
216 PF06239 ECSIT: Evolutionarily 97.3 0.0039 8.4E-08 51.5 10.4 60 423-484 34-98 (228)
217 PF06239 ECSIT: Evolutionarily 97.3 0.0069 1.5E-07 50.0 11.5 114 388-522 34-152 (228)
218 KOG1585 Protein required for f 97.3 0.04 8.8E-07 46.3 15.9 204 76-319 32-248 (308)
219 COG1729 Uncharacterized protei 97.2 0.0018 3.9E-08 55.6 8.1 92 50-146 152-244 (262)
220 PF13281 DUF4071: Domain of un 97.2 0.17 3.7E-06 46.7 20.9 165 371-537 144-334 (374)
221 KOG1538 Uncharacterized conser 97.2 0.05 1.1E-06 52.4 17.8 88 403-501 747-845 (1081)
222 KOG2796 Uncharacterized conser 97.2 0.12 2.6E-06 44.1 21.9 155 350-514 166-325 (366)
223 PF13281 DUF4071: Domain of un 97.2 0.13 2.8E-06 47.5 19.9 101 153-256 142-254 (374)
224 PF04840 Vps16_C: Vps16, C-ter 97.1 0.2 4.4E-06 45.7 30.0 107 370-496 179-285 (319)
225 PRK15331 chaperone protein Sic 97.1 0.057 1.2E-06 42.9 14.7 86 379-466 48-133 (165)
226 COG4785 NlpI Lipoprotein NlpI, 97.1 0.13 2.9E-06 42.4 19.8 188 44-257 70-266 (297)
227 KOG1258 mRNA processing protei 97.1 0.33 7.2E-06 46.8 34.7 397 55-487 61-489 (577)
228 COG4649 Uncharacterized protei 97.1 0.079 1.7E-06 42.0 14.7 127 51-182 70-197 (221)
229 PRK15331 chaperone protein Sic 97.0 0.03 6.4E-07 44.4 12.7 90 410-501 44-133 (165)
230 PF13424 TPR_12: Tetratricopep 97.0 0.00088 1.9E-08 46.8 4.0 68 153-221 6-74 (78)
231 PF03704 BTAD: Bacterial trans 97.0 0.035 7.6E-07 44.5 13.8 119 82-231 13-139 (146)
232 PF13371 TPR_9: Tetratricopept 97.0 0.0047 1E-07 42.4 7.4 53 448-501 5-57 (73)
233 COG3118 Thioredoxin domain-con 97.0 0.19 4.1E-06 44.0 17.8 154 412-568 143-297 (304)
234 KOG0543 FKBP-type peptidyl-pro 97.0 0.0067 1.5E-07 55.0 9.5 133 40-182 209-356 (397)
235 PF13431 TPR_17: Tetratricopep 96.9 0.0012 2.6E-08 36.9 3.1 33 62-96 2-34 (34)
236 PF13512 TPR_18: Tetratricopep 96.9 0.011 2.5E-07 45.5 9.4 76 46-121 17-93 (142)
237 PRK11906 transcriptional regul 96.9 0.18 3.8E-06 47.4 18.4 154 90-253 273-432 (458)
238 PF03704 BTAD: Bacterial trans 96.9 0.013 2.9E-07 46.9 10.1 73 476-549 65-142 (146)
239 KOG1920 IkappaB kinase complex 96.8 0.77 1.7E-05 48.2 23.7 110 405-534 941-1052(1265)
240 KOG2114 Vacuolar assembly/sort 96.8 0.66 1.4E-05 46.7 26.1 147 77-254 370-516 (933)
241 PF04184 ST7: ST7 protein; In 96.8 0.08 1.7E-06 49.7 15.3 59 197-255 263-322 (539)
242 KOG1538 Uncharacterized conser 96.8 0.32 7E-06 47.2 19.2 83 303-396 752-845 (1081)
243 KOG0543 FKBP-type peptidyl-pro 96.8 0.027 5.8E-07 51.3 11.6 140 81-256 214-354 (397)
244 PF10300 DUF3808: Protein of u 96.7 0.17 3.6E-06 49.4 17.7 111 58-179 176-294 (468)
245 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.022 4.8E-07 53.1 10.8 99 435-539 72-176 (453)
246 PRK11906 transcriptional regul 96.7 0.1 2.2E-06 49.0 14.9 147 383-535 273-434 (458)
247 COG4105 ComL DNA uptake lipopr 96.6 0.42 9.2E-06 41.1 22.2 67 75-146 34-100 (254)
248 PF12921 ATP13: Mitochondrial 96.5 0.066 1.4E-06 41.0 10.6 97 437-553 1-98 (126)
249 KOG1941 Acetylcholine receptor 96.4 0.053 1.1E-06 48.4 11.1 242 46-290 13-273 (518)
250 PF10300 DUF3808: Protein of u 96.3 0.35 7.7E-06 47.2 17.5 117 416-535 246-374 (468)
251 KOG1941 Acetylcholine receptor 95.9 0.82 1.8E-05 41.3 15.8 234 81-325 12-273 (518)
252 PF08631 SPO22: Meiosis protei 95.9 1.2 2.7E-05 40.2 24.1 165 50-227 4-191 (278)
253 KOG4555 TPR repeat-containing 95.9 0.18 3.9E-06 37.9 9.9 53 448-501 53-105 (175)
254 PF04184 ST7: ST7 protein; In 95.9 1.6 3.6E-05 41.4 19.6 164 156-340 172-338 (539)
255 KOG1585 Protein required for f 95.9 0.92 2E-05 38.5 19.1 87 229-325 32-118 (308)
256 KOG2114 Vacuolar assembly/sort 95.9 2.4 5.2E-05 43.0 28.8 180 78-289 337-516 (933)
257 PF12921 ATP13: Mitochondrial 95.8 0.21 4.6E-06 38.3 10.5 84 152-235 2-95 (126)
258 COG1729 Uncharacterized protei 95.8 0.33 7.1E-06 42.1 12.6 90 164-257 153-244 (262)
259 KOG4648 Uncharacterized conser 95.8 0.041 8.9E-07 48.6 7.3 98 42-151 100-197 (536)
260 KOG3941 Intermediate in Toll s 95.7 0.091 2E-06 45.2 8.9 104 436-558 65-173 (406)
261 KOG2610 Uncharacterized conser 95.7 0.36 7.9E-06 42.9 12.7 153 310-466 115-275 (491)
262 PF13428 TPR_14: Tetratricopep 95.7 0.033 7.2E-07 33.4 4.8 34 76-111 2-35 (44)
263 PF13512 TPR_18: Tetratricopep 95.7 0.31 6.7E-06 37.8 10.8 85 73-164 8-94 (142)
264 KOG1920 IkappaB kinase complex 95.6 2.8 6E-05 44.4 20.3 103 235-357 946-1050(1265)
265 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2 4.3E-05 40.2 37.0 130 369-501 398-530 (660)
266 PF04053 Coatomer_WDAD: Coatom 95.6 0.39 8.6E-06 46.1 13.7 158 341-534 269-428 (443)
267 PF04053 Coatomer_WDAD: Coatom 95.5 0.46 9.9E-06 45.7 14.0 80 151-251 346-425 (443)
268 COG4649 Uncharacterized protei 95.4 1.1 2.3E-05 35.9 13.1 122 130-257 71-196 (221)
269 PF13428 TPR_14: Tetratricopep 95.4 0.045 9.8E-07 32.8 4.6 41 153-200 2-42 (44)
270 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 35.6 16.1 83 409-499 13-95 (140)
271 KOG2610 Uncharacterized conser 95.4 0.68 1.5E-05 41.2 13.1 154 162-323 113-272 (491)
272 KOG1464 COP9 signalosome, subu 95.3 1.8 3.8E-05 37.4 17.3 201 50-252 38-255 (440)
273 COG0457 NrfG FOG: TPR repeat [ 95.2 1.9 4.2E-05 37.6 29.4 198 335-536 61-264 (291)
274 PF13176 TPR_7: Tetratricopept 95.2 0.047 1E-06 30.9 3.9 27 77-103 1-27 (36)
275 COG0457 NrfG FOG: TPR repeat [ 95.1 2.1 4.6E-05 37.4 28.9 200 299-502 60-265 (291)
276 COG4785 NlpI Lipoprotein NlpI, 95.1 1.7 3.8E-05 36.2 17.0 81 133-222 81-162 (297)
277 PRK15180 Vi polysaccharide bio 94.9 3.5 7.6E-05 38.9 29.1 103 451-555 711-825 (831)
278 PF00515 TPR_1: Tetratricopept 94.6 0.085 1.8E-06 29.3 3.9 29 76-104 2-30 (34)
279 PF09613 HrpB1_HrpK: Bacterial 94.5 1.6 3.4E-05 34.8 11.8 69 51-123 22-90 (160)
280 PF07719 TPR_2: Tetratricopept 94.4 0.094 2E-06 29.1 3.9 29 76-104 2-30 (34)
281 PF09205 DUF1955: Domain of un 94.4 1.7 3.6E-05 33.1 15.0 56 412-468 95-150 (161)
282 COG3629 DnrI DNA-binding trans 94.2 0.68 1.5E-05 40.9 10.4 75 438-513 153-232 (280)
283 PF13176 TPR_7: Tetratricopept 93.7 0.16 3.6E-06 28.7 4.0 23 476-498 2-24 (36)
284 KOG4234 TPR repeat-containing 93.7 0.48 1E-05 38.8 7.8 95 445-544 102-202 (271)
285 KOG1586 Protein required for f 93.7 3.9 8.5E-05 34.7 18.3 17 86-102 25-41 (288)
286 PF13174 TPR_6: Tetratricopept 93.5 0.098 2.1E-06 28.7 2.8 28 77-104 2-29 (33)
287 COG3629 DnrI DNA-binding trans 93.4 0.99 2.1E-05 39.9 10.0 78 404-482 154-236 (280)
288 KOG4642 Chaperone-dependent E3 93.4 3.1 6.7E-05 35.4 12.1 128 40-177 11-142 (284)
289 PF06552 TOM20_plant: Plant sp 93.3 0.71 1.5E-05 37.3 8.1 77 54-147 50-137 (186)
290 smart00299 CLH Clathrin heavy 93.3 3.3 7.2E-05 32.6 16.5 125 372-519 11-136 (140)
291 PF09613 HrpB1_HrpK: Bacterial 93.2 3.6 7.8E-05 32.8 13.3 52 414-466 21-72 (160)
292 PF10602 RPN7: 26S proteasome 93.1 1.4 3E-05 36.4 10.0 97 439-535 37-140 (177)
293 KOG4234 TPR repeat-containing 92.9 0.96 2.1E-05 37.1 8.3 98 42-147 98-198 (271)
294 PF13431 TPR_17: Tetratricopep 92.9 0.15 3.2E-06 28.4 2.8 22 436-457 11-32 (34)
295 PF00515 TPR_1: Tetratricopept 92.8 0.26 5.7E-06 27.3 3.9 26 476-501 4-29 (34)
296 PF09205 DUF1955: Domain of un 92.8 3.4 7.4E-05 31.5 14.6 60 373-433 91-150 (161)
297 KOG3941 Intermediate in Toll s 92.6 1.2 2.6E-05 38.7 9.0 34 280-313 140-173 (406)
298 PRK09687 putative lyase; Provi 92.6 7.7 0.00017 35.0 27.1 137 402-554 141-278 (280)
299 PRK11619 lytic murein transgly 92.6 14 0.0003 38.0 37.1 47 447-496 416-462 (644)
300 KOG1550 Extracellular protein 92.5 13 0.00028 37.6 27.2 183 91-293 228-427 (552)
301 KOG1550 Extracellular protein 92.5 13 0.00028 37.5 26.4 178 209-398 228-427 (552)
302 PF10602 RPN7: 26S proteasome 92.3 2.7 5.9E-05 34.7 10.7 61 230-290 38-100 (177)
303 TIGR02561 HrpB1_HrpK type III 92.2 4.7 0.0001 31.6 11.4 52 52-105 23-74 (153)
304 PF07719 TPR_2: Tetratricopept 92.1 0.36 7.7E-06 26.6 3.9 23 478-500 6-28 (34)
305 KOG0276 Vesicle coat complex C 92.1 2.7 5.9E-05 40.9 11.5 42 131-178 651-692 (794)
306 KOG2471 TPR repeat-containing 92.1 8.5 0.00018 36.7 14.3 39 206-244 30-68 (696)
307 PF06552 TOM20_plant: Plant sp 92.0 1.3 2.8E-05 35.9 8.1 115 55-181 7-136 (186)
308 KOG4648 Uncharacterized conser 91.6 1.1 2.4E-05 40.1 7.9 93 122-222 102-194 (536)
309 PF13374 TPR_10: Tetratricopep 91.2 0.54 1.2E-05 27.5 4.2 29 76-104 3-31 (42)
310 PF07035 Mic1: Colon cancer-as 91.1 7.2 0.00016 31.6 14.6 134 138-291 15-148 (167)
311 COG2976 Uncharacterized protei 91.0 8 0.00017 32.0 13.1 90 159-258 96-189 (207)
312 KOG0890 Protein kinase of the 91.0 38 0.00082 39.7 26.4 152 198-357 1388-1542(2382)
313 PF07035 Mic1: Colon cancer-as 90.9 7.5 0.00016 31.5 16.0 29 252-280 18-46 (167)
314 PF13181 TPR_8: Tetratricopept 90.5 0.76 1.6E-05 25.3 4.1 29 76-104 2-30 (34)
315 KOG1464 COP9 signalosome, subu 90.2 12 0.00025 32.7 18.4 156 240-395 39-218 (440)
316 COG1747 Uncharacterized N-term 90.1 19 0.00041 34.8 24.6 165 227-398 65-235 (711)
317 COG1747 Uncharacterized N-term 89.8 20 0.00043 34.6 22.8 164 332-502 65-234 (711)
318 PF11207 DUF2989: Protein of u 89.4 12 0.00025 31.4 12.0 79 162-248 117-198 (203)
319 PF13374 TPR_10: Tetratricopep 89.2 0.95 2.1E-05 26.4 4.1 26 475-500 4-29 (42)
320 KOG0376 Serine-threonine phosp 89.2 0.79 1.7E-05 43.1 5.3 109 43-163 8-116 (476)
321 PF13170 DUF4003: Protein of u 89.0 18 0.00039 33.0 20.4 48 210-257 79-132 (297)
322 PF13170 DUF4003: Protein of u 88.5 19 0.00041 32.8 20.4 130 244-375 78-224 (297)
323 TIGR02561 HrpB1_HrpK type III 88.4 11 0.00023 29.7 11.7 52 415-467 22-73 (153)
324 KOG0276 Vesicle coat complex C 88.4 9.9 0.00021 37.3 11.8 132 154-324 616-747 (794)
325 KOG1308 Hsp70-interacting prot 88.3 0.17 3.7E-06 45.0 0.5 95 50-154 125-219 (377)
326 PF10345 Cohesin_load: Cohesin 88.2 34 0.00074 35.2 39.0 194 56-255 38-252 (608)
327 PF07721 TPR_4: Tetratricopept 87.7 0.83 1.8E-05 23.4 2.7 23 77-99 3-25 (26)
328 PF13181 TPR_8: Tetratricopept 87.7 0.96 2.1E-05 24.9 3.2 26 476-501 4-29 (34)
329 COG2909 MalT ATP-dependent tra 87.4 40 0.00088 35.2 31.5 231 163-393 426-684 (894)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 6.7 0.00015 28.0 7.6 45 456-500 25-69 (103)
331 PF11207 DUF2989: Protein of u 87.3 5.8 0.00013 33.1 8.5 77 450-528 119-198 (203)
332 PF02284 COX5A: Cytochrome c o 86.9 9.7 0.00021 27.6 9.7 47 386-432 28-74 (108)
333 KOG2471 TPR repeat-containing 86.8 18 0.00039 34.6 12.3 107 412-520 249-381 (696)
334 PF04910 Tcf25: Transcriptiona 86.7 29 0.00062 32.8 18.8 108 67-180 34-167 (360)
335 PF14853 Fis1_TPR_C: Fis1 C-te 86.6 4 8.7E-05 25.5 5.7 40 77-118 3-42 (53)
336 KOG4570 Uncharacterized conser 86.4 13 0.00027 33.4 10.4 50 417-466 114-163 (418)
337 TIGR03504 FimV_Cterm FimV C-te 85.8 2 4.3E-05 25.6 3.8 23 514-536 5-27 (44)
338 smart00028 TPR Tetratricopepti 85.4 1.6 3.5E-05 23.0 3.5 29 76-104 2-30 (34)
339 TIGR03504 FimV_Cterm FimV C-te 85.3 2.1 4.5E-05 25.5 3.8 27 79-105 3-29 (44)
340 COG2909 MalT ATP-dependent tra 85.2 52 0.0011 34.4 33.7 306 9-323 319-684 (894)
341 KOG0890 Protein kinase of the 85.1 89 0.0019 37.0 31.5 150 233-392 1388-1542(2382)
342 COG2976 Uncharacterized protei 85.0 21 0.00046 29.7 14.7 90 444-538 95-189 (207)
343 PF13174 TPR_6: Tetratricopept 84.7 1.8 3.9E-05 23.4 3.3 25 512-536 4-28 (33)
344 PF14561 TPR_20: Tetratricopep 84.5 12 0.00027 26.7 9.5 63 59-123 8-71 (90)
345 PF02259 FAT: FAT domain; Int 84.1 38 0.00081 31.9 26.3 53 159-221 5-57 (352)
346 KOG4570 Uncharacterized conser 84.0 20 0.00044 32.2 10.6 48 348-395 115-162 (418)
347 PF10345 Cohesin_load: Cohesin 83.9 56 0.0012 33.7 38.6 183 135-324 39-251 (608)
348 PRK09687 putative lyase; Provi 83.3 35 0.00076 30.9 27.8 176 192-383 36-221 (280)
349 PF02284 COX5A: Cytochrome c o 82.4 16 0.00036 26.5 9.2 44 457-500 29-72 (108)
350 COG4455 ImpE Protein of avirul 82.1 13 0.00029 31.4 8.3 75 156-237 5-81 (273)
351 PF12862 Apc5: Anaphase-promot 82.1 4.4 9.5E-05 29.3 5.3 54 51-104 10-70 (94)
352 PF07163 Pex26: Pex26 protein; 82.0 28 0.0006 30.8 10.5 87 340-426 90-181 (309)
353 PF08424 NRDE-2: NRDE-2, neces 81.2 47 0.001 30.8 18.0 118 420-539 48-185 (321)
354 KOG4642 Chaperone-dependent E3 81.0 36 0.00077 29.4 12.1 121 123-253 16-142 (284)
355 COG4455 ImpE Protein of avirul 81.0 16 0.00035 30.9 8.4 23 265-287 37-59 (273)
356 PF02259 FAT: FAT domain; Int 80.9 50 0.0011 31.0 24.9 64 403-466 146-212 (352)
357 KOG0545 Aryl-hydrocarbon recep 80.6 13 0.00029 31.9 8.0 100 39-146 178-293 (329)
358 KOG0551 Hsp90 co-chaperone CNS 80.5 6.1 0.00013 35.6 6.4 66 38-104 80-148 (390)
359 KOG3807 Predicted membrane pro 80.1 46 0.001 30.2 12.0 54 199-254 281-337 (556)
360 PF04190 DUF410: Protein of un 79.7 45 0.00097 29.8 16.3 159 52-257 3-170 (260)
361 KOG2066 Vacuolar assembly/sort 78.9 84 0.0018 32.5 29.6 105 159-275 363-467 (846)
362 KOG4507 Uncharacterized conser 78.8 15 0.00032 36.0 8.7 104 50-163 618-721 (886)
363 PRK10941 hypothetical protein; 78.4 8.9 0.00019 34.2 6.9 70 33-104 175-244 (269)
364 COG3947 Response regulator con 78.4 50 0.0011 29.5 15.3 43 56-101 150-192 (361)
365 cd00923 Cyt_c_Oxidase_Va Cytoc 78.1 23 0.0005 25.5 9.5 45 386-430 25-69 (103)
366 PF00637 Clathrin: Region in C 77.1 1.1 2.3E-05 35.6 0.9 83 199-288 13-95 (143)
367 COG3947 Response regulator con 76.9 55 0.0012 29.3 16.5 59 441-500 282-340 (361)
368 PF00637 Clathrin: Region in C 76.9 1.1 2.5E-05 35.5 0.9 53 270-322 14-66 (143)
369 KOG1586 Protein required for f 76.6 49 0.0011 28.5 18.6 64 158-222 119-183 (288)
370 smart00386 HAT HAT (Half-A-TPR 76.3 7.5 0.00016 20.7 4.0 29 53-83 1-29 (33)
371 KOG4507 Uncharacterized conser 75.8 18 0.00039 35.5 8.3 88 449-537 618-705 (886)
372 PF13929 mRNA_stabil: mRNA sta 74.8 63 0.0014 29.0 15.6 63 365-427 199-262 (292)
373 PRK15180 Vi polysaccharide bio 74.6 85 0.0018 30.3 24.7 125 160-293 297-421 (831)
374 KOG2396 HAT (Half-A-TPR) repea 74.5 88 0.0019 30.5 40.1 98 435-536 456-558 (568)
375 PRK10941 hypothetical protein; 74.0 60 0.0013 29.1 10.9 79 476-556 184-264 (269)
376 COG0790 FOG: TPR repeat, SEL1 73.7 72 0.0016 29.1 24.4 123 418-547 128-276 (292)
377 PF07163 Pex26: Pex26 protein; 72.7 70 0.0015 28.5 11.5 124 163-286 46-181 (309)
378 KOG3364 Membrane protein invol 72.4 41 0.00089 26.1 7.9 57 52-111 48-105 (149)
379 KOG4077 Cytochrome c oxidase, 72.1 39 0.00084 25.7 7.5 45 457-501 68-112 (149)
380 PF07575 Nucleopor_Nup85: Nup8 72.0 1.2E+02 0.0026 31.0 18.3 27 75-102 149-175 (566)
381 COG0790 FOG: TPR repeat, SEL1 71.8 79 0.0017 28.8 23.9 150 129-293 53-221 (292)
382 PF10579 Rapsyn_N: Rapsyn N-te 70.7 15 0.00033 25.2 4.8 47 485-531 18-66 (80)
383 PF14853 Fis1_TPR_C: Fis1 C-te 70.4 21 0.00045 22.4 5.1 23 514-536 7-29 (53)
384 KOG0128 RNA-binding protein SA 70.2 1.5E+02 0.0032 31.1 30.9 90 52-145 126-218 (881)
385 PF04190 DUF410: Protein of un 69.5 84 0.0018 28.1 17.7 71 146-217 43-114 (260)
386 PF08424 NRDE-2: NRDE-2, neces 69.4 97 0.0021 28.8 17.5 99 149-255 16-129 (321)
387 PF04097 Nic96: Nup93/Nic96; 69.3 1.4E+02 0.0031 30.7 23.7 64 151-222 111-181 (613)
388 PF14689 SPOB_a: Sensor_kinase 68.8 14 0.00029 24.2 4.3 29 507-535 22-50 (62)
389 PF10579 Rapsyn_N: Rapsyn N-te 68.3 8.3 0.00018 26.4 3.2 54 45-98 12-66 (80)
390 COG4941 Predicted RNA polymera 67.9 1E+02 0.0022 28.4 16.2 168 46-222 203-394 (415)
391 KOG0376 Serine-threonine phosp 67.9 15 0.00033 35.0 6.0 100 377-481 13-113 (476)
392 KOG1308 Hsp70-interacting prot 67.4 4 8.8E-05 36.8 2.2 95 414-511 125-220 (377)
393 KOG2063 Vacuolar assembly/sort 67.3 1.8E+02 0.0039 31.1 23.0 187 335-521 506-745 (877)
394 KOG2581 26S proteasome regulat 66.8 1.2E+02 0.0025 28.8 12.4 67 76-146 210-276 (493)
395 KOG4077 Cytochrome c oxidase, 64.5 50 0.0011 25.2 6.8 40 496-535 72-111 (149)
396 PF12862 Apc5: Anaphase-promot 64.4 50 0.0011 23.8 7.1 52 484-535 9-68 (94)
397 PF14689 SPOB_a: Sensor_kinase 64.1 24 0.00052 23.0 4.8 30 192-221 22-51 (62)
398 PF09986 DUF2225: Uncharacteri 63.9 55 0.0012 28.1 8.3 52 55-106 141-196 (214)
399 PF09986 DUF2225: Uncharacteri 63.9 96 0.0021 26.7 11.6 64 475-538 120-195 (214)
400 PRK11619 lytic murein transgly 62.8 2E+02 0.0043 30.0 38.9 54 227-281 128-181 (644)
401 PF13929 mRNA_stabil: mRNA sta 62.5 1.2E+02 0.0026 27.3 18.4 119 164-287 140-262 (292)
402 KOG2066 Vacuolar assembly/sort 62.3 2E+02 0.0044 29.9 27.1 51 52-102 369-419 (846)
403 TIGR02508 type_III_yscG type I 62.1 59 0.0013 23.7 7.9 18 447-464 48-65 (115)
404 KOG2396 HAT (Half-A-TPR) repea 62.1 1.6E+02 0.0035 28.8 39.3 408 136-568 90-555 (568)
405 PF12968 DUF3856: Domain of Un 61.7 60 0.0013 24.5 6.8 53 50-102 20-82 (144)
406 PF04097 Nic96: Nup93/Nic96; 61.7 2E+02 0.0044 29.7 24.7 66 80-146 116-181 (613)
407 COG4976 Predicted methyltransf 61.1 23 0.0005 30.3 5.2 54 50-105 6-59 (287)
408 PF14561 TPR_20: Tetratricopep 61.1 58 0.0013 23.3 8.3 54 507-560 21-75 (90)
409 COG5187 RPN7 26S proteasome re 60.7 94 0.002 27.8 8.9 102 72-181 112-221 (412)
410 PF11848 DUF3368: Domain of un 60.6 36 0.00078 20.7 5.1 33 519-551 13-45 (48)
411 KOG2422 Uncharacterized conser 59.8 1.9E+02 0.0042 28.9 18.1 162 165-326 251-447 (665)
412 TIGR02508 type_III_yscG type I 59.5 66 0.0014 23.4 7.4 78 384-468 21-98 (115)
413 PRK10564 maltose regulon perip 59.3 29 0.00064 31.1 5.9 37 511-547 260-296 (303)
414 PF05944 Phage_term_smal: Phag 58.5 86 0.0019 24.4 9.0 30 476-505 51-80 (132)
415 PF11846 DUF3366: Domain of un 58.2 54 0.0012 27.6 7.4 33 504-536 140-172 (193)
416 PF04910 Tcf25: Transcriptiona 57.3 1.8E+02 0.0038 27.6 21.8 31 190-220 37-67 (360)
417 cd00280 TRFH Telomeric Repeat 57.1 88 0.0019 25.9 7.6 21 446-466 119-139 (200)
418 KOG0991 Replication factor C, 56.9 1.3E+02 0.0029 26.1 13.0 38 355-394 181-218 (333)
419 COG5159 RPN6 26S proteasome re 56.4 1.5E+02 0.0033 26.6 19.7 134 79-218 7-150 (421)
420 KOG0991 Replication factor C, 56.2 1.4E+02 0.003 26.0 12.5 80 215-297 181-272 (333)
421 PF09670 Cas_Cas02710: CRISPR- 56.2 1.9E+02 0.0041 27.7 12.0 56 376-432 139-198 (379)
422 KOG2908 26S proteasome regulat 54.1 1.5E+02 0.0033 27.3 9.3 63 447-509 84-156 (380)
423 PF07720 TPR_3: Tetratricopept 53.7 39 0.00085 19.0 3.9 27 76-102 2-30 (36)
424 KOG2034 Vacuolar sorting prote 53.5 3E+02 0.0066 29.2 29.6 170 160-359 366-556 (911)
425 KOG3364 Membrane protein invol 53.2 1.1E+02 0.0023 23.9 9.9 64 472-536 31-99 (149)
426 KOG2659 LisH motif-containing 52.2 85 0.0018 27.0 7.2 116 435-552 23-147 (228)
427 PF09670 Cas_Cas02710: CRISPR- 52.2 1.7E+02 0.0038 27.9 10.3 60 81-146 137-198 (379)
428 PF11848 DUF3368: Domain of un 52.1 53 0.0011 20.0 5.1 33 203-235 12-44 (48)
429 KOG0551 Hsp90 co-chaperone CNS 51.9 1.2E+02 0.0025 28.0 8.2 102 73-182 79-183 (390)
430 KOG0128 RNA-binding protein SA 51.9 3.1E+02 0.0068 28.9 38.9 154 57-222 97-260 (881)
431 KOG4567 GTPase-activating prot 51.6 1.9E+02 0.004 26.4 9.3 42 460-501 265-306 (370)
432 COG5108 RPO41 Mitochondrial DN 51.2 1.3E+02 0.0028 30.5 9.1 76 157-239 33-114 (1117)
433 KOG3824 Huntingtin interacting 51.0 35 0.00076 30.6 4.9 54 49-104 126-179 (472)
434 PF11846 DUF3366: Domain of un 50.8 87 0.0019 26.4 7.4 49 55-108 127-175 (193)
435 KOG4567 GTPase-activating prot 50.8 1.1E+02 0.0024 27.7 7.8 71 248-323 263-343 (370)
436 KOG0545 Aryl-hydrocarbon recep 49.5 71 0.0015 27.8 6.3 62 41-104 232-293 (329)
437 KOG2582 COP9 signalosome, subu 49.0 2.3E+02 0.005 26.5 12.4 68 77-145 142-211 (422)
438 PF02184 HAT: HAT (Half-A-TPR) 48.7 45 0.00098 18.3 3.3 22 489-512 3-24 (32)
439 KOG0686 COP9 signalosome, subu 48.3 2.5E+02 0.0055 26.8 13.8 64 194-257 151-216 (466)
440 COG2912 Uncharacterized conser 46.9 48 0.001 29.4 5.2 60 49-112 191-250 (269)
441 COG0735 Fur Fe2+/Zn2+ uptake r 46.8 1.2E+02 0.0026 24.1 7.1 44 234-277 26-69 (145)
442 KOG2062 26S proteasome regulat 46.7 3.6E+02 0.0078 28.1 31.1 182 57-257 41-239 (929)
443 PF11817 Foie-gras_1: Foie gra 46.4 1.2E+02 0.0026 26.8 7.8 59 231-289 181-244 (247)
444 COG0735 Fur Fe2+/Zn2+ uptake r 46.1 1.5E+02 0.0033 23.6 7.8 62 250-312 8-69 (145)
445 PF11663 Toxin_YhaV: Toxin wit 45.7 29 0.00062 26.8 3.2 33 203-237 105-137 (140)
446 PRK10564 maltose regulon perip 45.5 47 0.001 29.9 5.0 36 476-511 260-295 (303)
447 KOG2034 Vacuolar sorting prote 44.9 4.2E+02 0.009 28.3 25.4 78 81-177 364-441 (911)
448 TIGR02710 CRISPR-associated pr 44.8 2.8E+02 0.0062 26.4 10.2 61 81-142 136-196 (380)
449 KOG0686 COP9 signalosome, subu 44.8 2.9E+02 0.0062 26.4 14.4 94 229-324 151-255 (466)
450 KOG2582 COP9 signalosome, subu 44.4 2.7E+02 0.0059 26.1 16.0 55 448-502 287-345 (422)
451 KOG0292 Vesicle coat complex C 44.3 4.3E+02 0.0093 28.3 12.6 129 50-222 654-782 (1202)
452 KOG1839 Uncharacterized protei 43.9 2.3E+02 0.0051 31.5 10.4 155 130-284 945-1120(1236)
453 PF10255 Paf67: RNA polymerase 43.8 3E+02 0.0064 26.6 10.1 58 442-499 126-190 (404)
454 PF10475 DUF2450: Protein of u 43.8 2.4E+02 0.0052 25.7 9.6 52 199-256 104-155 (291)
455 KOG1839 Uncharacterized protei 43.2 1.1E+02 0.0023 33.9 7.9 148 57-213 956-1119(1236)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 43.2 1.5E+02 0.0033 22.8 9.9 43 491-533 81-124 (126)
457 smart00777 Mad3_BUB1_I Mad3/BU 42.6 1.4E+02 0.0031 22.9 6.6 44 92-141 80-123 (125)
458 PRK12798 chemotaxis protein; R 42.3 3.2E+02 0.0069 26.3 22.1 83 276-360 125-212 (421)
459 COG2256 MGS1 ATPase related to 42.1 3.2E+02 0.0069 26.2 15.7 51 262-312 245-298 (436)
460 PF11817 Foie-gras_1: Foie gra 41.7 1.1E+02 0.0023 27.1 6.8 63 193-255 178-245 (247)
461 smart00777 Mad3_BUB1_I Mad3/BU 41.4 1.6E+02 0.0035 22.6 7.4 43 490-532 80-123 (125)
462 KOG1114 Tripeptidyl peptidase 40.7 5.1E+02 0.011 28.1 15.6 67 247-313 1215-1282(1304)
463 PF15297 CKAP2_C: Cytoskeleton 40.6 3.1E+02 0.0067 25.6 9.9 63 490-554 120-186 (353)
464 KOG0687 26S proteasome regulat 40.4 3E+02 0.0065 25.4 16.1 100 153-256 105-209 (393)
465 PF10516 SHNi-TPR: SHNi-TPR; 40.3 73 0.0016 18.3 3.7 28 76-103 2-29 (38)
466 PF10366 Vps39_1: Vacuolar sor 40.3 74 0.0016 23.7 4.7 50 511-560 42-96 (108)
467 KOG0530 Protein farnesyltransf 40.2 2.7E+02 0.0059 24.8 13.8 139 403-544 43-183 (318)
468 KOG4521 Nuclear pore complex, 40.0 5.7E+02 0.012 28.5 16.6 128 154-286 985-1125(1480)
469 PF09477 Type_III_YscG: Bacter 40.0 1.6E+02 0.0034 22.0 10.9 18 449-466 80-97 (116)
470 PRK13800 putative oxidoreducta 39.9 5.5E+02 0.012 28.3 27.3 126 401-536 754-880 (897)
471 PF10475 DUF2450: Protein of u 39.9 3E+02 0.0064 25.2 9.6 54 157-222 103-156 (291)
472 PF11663 Toxin_YhaV: Toxin wit 39.9 38 0.00082 26.2 3.1 35 125-161 103-137 (140)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 39.7 1.7E+02 0.0038 22.5 12.4 81 89-178 40-125 (126)
474 KOG2297 Predicted translation 39.5 3E+02 0.0065 25.1 14.1 20 228-247 321-340 (412)
475 PF00244 14-3-3: 14-3-3 protei 39.0 2.7E+02 0.0059 24.5 11.8 47 490-536 143-197 (236)
476 cd08819 CARD_MDA5_2 Caspase ac 37.4 1.5E+02 0.0032 21.0 6.5 65 135-214 20-87 (88)
477 PRK13342 recombination factor 37.2 4E+02 0.0087 25.9 17.3 55 311-365 243-302 (413)
478 PF00244 14-3-3: 14-3-3 protei 36.1 3E+02 0.0065 24.2 11.6 47 455-501 143-197 (236)
479 PRK09462 fur ferric uptake reg 36.1 2.2E+02 0.0047 22.7 7.2 38 523-560 32-69 (148)
480 cd08819 CARD_MDA5_2 Caspase ac 36.0 1.6E+02 0.0034 20.9 7.0 14 312-325 50-63 (88)
481 KOG2908 26S proteasome regulat 35.3 3.7E+02 0.0081 25.0 9.3 55 272-326 84-143 (380)
482 KOG2422 Uncharacterized conser 34.9 4.9E+02 0.011 26.3 18.3 164 52-221 251-447 (665)
483 PRK11639 zinc uptake transcrip 34.9 2.4E+02 0.0051 23.2 7.3 71 490-561 8-78 (169)
484 COG5108 RPO41 Mitochondrial DN 34.3 3.4E+02 0.0074 27.8 9.1 90 233-325 33-130 (1117)
485 KOG2300 Uncharacterized conser 34.1 4.7E+02 0.01 25.8 38.5 133 78-218 10-152 (629)
486 COG4976 Predicted methyltransf 33.9 1.4E+02 0.0031 25.8 5.7 53 448-501 5-57 (287)
487 KOG2063 Vacuolar assembly/sort 33.5 6.6E+02 0.014 27.3 20.4 27 195-221 506-532 (877)
488 COG5159 RPN6 26S proteasome re 33.2 3.7E+02 0.008 24.3 21.3 198 158-361 9-234 (421)
489 PRK13342 recombination factor 33.1 4.7E+02 0.01 25.5 18.6 25 346-370 243-267 (413)
490 PF04348 LppC: LppC putative l 32.4 15 0.00032 36.8 0.0 110 61-176 11-122 (536)
491 PRK14700 recombination factor 32.1 4E+02 0.0087 24.4 11.6 46 22-67 32-93 (300)
492 PF03745 DUF309: Domain of unk 32.0 1.5E+02 0.0032 19.4 6.1 48 203-250 9-61 (62)
493 KOG0292 Vesicle coat complex C 32.0 1.1E+02 0.0024 32.2 5.7 100 414-534 654-753 (1202)
494 PF04762 IKI3: IKI3 family; I 31.7 7.4E+02 0.016 27.4 17.8 23 157-179 699-721 (928)
495 KOG0687 26S proteasome regulat 31.6 4.2E+02 0.0092 24.5 15.6 95 300-396 106-209 (393)
496 PF10373 EST1_DNA_bind: Est1 D 31.1 2.1E+02 0.0046 25.6 7.3 62 58-122 1-62 (278)
497 PRK13800 putative oxidoreducta 30.4 7.7E+02 0.017 27.2 28.2 153 332-501 727-880 (897)
498 PHA02875 ankyrin repeat protei 30.4 5.1E+02 0.011 25.1 12.6 49 235-287 39-89 (413)
499 COG3914 Spy Predicted O-linked 30.0 5.3E+02 0.011 26.1 9.5 107 51-161 79-185 (620)
500 PF09454 Vps23_core: Vps23 cor 29.7 1.4E+02 0.0031 19.7 4.2 52 189-241 4-55 (65)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-66 Score=525.94 Aligned_cols=501 Identities=18% Similarity=0.291 Sum_probs=463.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
++.|++++|+++|+.|.+.+..+++...+..++..+.+.|.+++|+.+|+.|.. |+..+|+.++.+|++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g----- 451 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ----- 451 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc-----
Confidence 357899999999999998876456777788888999999999999999998874 89999999999998875
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ +.||..+|+.+|.+|++.|++
T Consensus 452 --~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 452 --DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999999999988 789999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD--QGVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 5789999999999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914 368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG 447 (570)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (570)
..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----c-------------------CChhHHHHHHHHHHHCCC
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----D-------------------GQMDKAHGLFLDMEAKGL 504 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~ 504 (570)
|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999866432 1 234679999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914 505 EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH 569 (570)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 569 (570)
.||..||..++.+++..+..+.+..+++.|...+..|+..+|..+++++++. ..+|...++.+
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 9999999999988888899999999999998888889999999999998432 24677776653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-65 Score=522.18 Aligned_cols=481 Identities=21% Similarity=0.326 Sum_probs=453.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914 72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP 150 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (570)
.++...|..+...+.+.|++++|+++|++|.+.++. ++..++..++..|.+. |.+++|..+++.|.. |
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-------g~~~eAl~lf~~M~~----p 435 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-------RAVKEAFRFAKLIRN----P 435 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-------CCHHHHHHHHHHcCC----C
Confidence 467778888888999999999999999999999864 5666777788888775 499999999998863 8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+..+|+.++.+|++.|+++.|.++|+.|.+.+ +.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999988 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL--RGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~ 308 (570)
|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 57899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHH
Q 038914 309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHAL 388 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 388 (570)
++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914 389 KLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG 468 (570)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (570)
++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHH
Q 038914 469 LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR----N-------------------NETS 525 (570)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~ 525 (570)
+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999865432 1 2347
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914 526 KVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH 569 (570)
Q Consensus 526 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 569 (570)
+|..+|++|.+.|+.||..||..++.++++.+....+...++.+
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 89999999999999999999999999998888777666655543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-64 Score=523.62 Aligned_cols=491 Identities=23% Similarity=0.353 Sum_probs=416.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG----- 124 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 124 (570)
.+.|+++.|..+|+.+. .++..+|+.++.+|.+.|++++|+++|++|...|+.||..+|..++.+|...+
T Consensus 132 ~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 132 VRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 47889999999999884 36889999999999999999999999999999999999999999999887553
Q ss_pred -----------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914 125 -----------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 181 (570)
Q Consensus 125 -----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (570)
..|.+.|++++|..+|++|. .+|..+|+.+|.+|++.|++++|+++|++|...
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34566677777777777765 356777777777777777777777777777776
Q ss_pred CCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038914 182 NGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP 261 (570)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 261 (570)
+ +.||..+|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .|
T Consensus 283 g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~ 352 (857)
T PLN03077 283 S------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TK 352 (857)
T ss_pred C------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CC
Confidence 6 6777777777777777777777777777777777777788888888888888888888888887775 35
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN 341 (570)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (570)
|..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..++..+++.++.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 77778888888888888888888888888878888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914 342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK 421 (570)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 421 (570)
+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 88888888888888887764 4677888888888888888888888888875 478888888888888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 422 AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+.+++..+.+.++.++..++++++.+|.+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888889999999999999999999887 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914 502 KGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-MRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH 569 (570)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 569 (570)
.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|++.|+.++|.+.++++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999 7899999999999999999999999999988875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-63 Score=515.57 Aligned_cols=501 Identities=20% Similarity=0.284 Sum_probs=386.4
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG---- 124 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 124 (570)
+.+.|++++|+.+|+.+.+.+. +++..+|..++..+.+.+.++.+.+++..+.+.+..++...++.++..|.+.|
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRV-PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH
Confidence 3466788888888888776543 35555555555555555555555555555555444444444444444444433
Q ss_pred --------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 038914 125 --------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 184 (570)
Q Consensus 125 --------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (570)
..+.+.|++++|+.+|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.+
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-- 217 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-- 217 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--
Confidence 1122234777777777777776777777777777766666666666666666666665
Q ss_pred CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 038914 185 IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV 264 (570)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 264 (570)
+.||..+++.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|.+|...|+.||..
T Consensus 218 ----~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 218 ----FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred ----CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 667777788888888888888888888888864 577888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914 265 TFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC 344 (570)
Q Consensus 265 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (570)
+|+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|.
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 88888888888888888888888888888888888888899888888999889888888863 57788889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038914 345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVE 424 (570)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 424 (570)
+.|++++|+++|++|...|+.||..+|..++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504 (570)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (570)
+|++|. .+|..+|+.++.+|.+.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 888775 45667777777777777777777777777764 3666666666655554444444444444444333332
Q ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 505 ------------------------------EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV 554 (570)
Q Consensus 505 ------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 554 (570)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..++.+|.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999999
Q ss_pred ccCcccccchhhhhc
Q 038914 555 KNEISLNSIPQFKRH 569 (570)
Q Consensus 555 ~~g~~~~a~~~~~~~ 569 (570)
+.|+.++|.+.|+.+
T Consensus 601 ~~g~v~ea~~~f~~M 615 (857)
T PLN03077 601 RSGMVTQGLEYFHSM 615 (857)
T ss_pred hcChHHHHHHHHHHH
Confidence 999999999998765
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-59 Score=477.01 Aligned_cols=461 Identities=17% Similarity=0.305 Sum_probs=425.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
.+.|++++|+.+|+++....+..++..+|+.++.++.+.++++.|.+++..|.+.|+.||..+++.++..|.+.|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g----- 172 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG----- 172 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-----
Confidence 467899999999999987765568899999999999999999999999999999999999999999999888764
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|..++.+|...|..
T Consensus 173 --~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 173 --MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred --CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcH
Confidence 9999999999986 4789999999999999999999999999999887 789999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854 58899999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914 290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369 (570)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (570)
.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++++..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864 5889
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRI-LKYELNIVSYNCLIDGL 448 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 448 (570)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 58899999999999999
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038914 449 CKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKV 527 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 527 (570)
.+.|++++|.++++++. +.|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..++..|.+.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999998764 579999999999999999999999999999876 456 467899999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 038914 528 IELLHRMDMRNVM 540 (570)
Q Consensus 528 ~~~~~~~~~~~~~ 540 (570)
.+++++|.+.|+.
T Consensus 548 ~~v~~~m~~~g~~ 560 (697)
T PLN03081 548 AKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999988864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-60 Score=481.51 Aligned_cols=468 Identities=20% Similarity=0.287 Sum_probs=445.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
.+..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|..++.+|.+.+ +++.+..++..|.+.|+.||
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-------~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-------SIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhCCCcc
Confidence 455689999999999999999999999998864 6799999999999999875 99999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 9999999999999999999999999995 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLT 311 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (570)
+.++.+++..|..+.+.+++..+.+.|..||..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999995 45889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914 312 GKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF 391 (570)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (570)
|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh-CCCC
Q 038914 392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR-VGLM 470 (570)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 470 (570)
+.|. .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9986 4688999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038914 471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIV 549 (570)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l 549 (570)
|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L 534 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVL 534 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHH
Confidence 99999999999999999999999998876 4789999999999999999999999999999984 4564 6799999
Q ss_pred HHHHHccCcccccchhhhhcC
Q 038914 550 VDLLVKNEISLNSIPQFKRHK 570 (570)
Q Consensus 550 ~~~~~~~g~~~~a~~~~~~~~ 570 (570)
+++|.+.|++++|.+.++.++
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999988754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-33 Score=300.87 Aligned_cols=497 Identities=10% Similarity=0.026 Sum_probs=338.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG----- 124 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 124 (570)
...|++++|...|+++.+.+| .+...+..++.++...|++++|++.|+++........ .....++..+...|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHH
Confidence 344566666666666665555 4555555566666666666666666665555422111 11111122222211
Q ss_pred ----------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 125 ----------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 125 ----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
..+...|++++|...|+++.+.. +.+..++..++..+...|++++|...|+++...+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11222346666666666555542 2233445555555566666666666666665543
Q ss_pred CCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038914 183 GEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN 262 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (570)
+.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+
T Consensus 530 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 530 -------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred -------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 3345566666666666666666666666665543 2345556666666777777777777777666542 335
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING 342 (570)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (570)
...|..++.++...|++++|...++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 5667777777777777777777777776653 3345566667777777777777777777776653 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038914 343 YCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKA 422 (570)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 422 (570)
+...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+.... |+..++..++.++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 777777777777777777653 3355666777777888888888888888887754 3446667778888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 423 VELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
...++.+.+.. +.+...+..++..|...|++++|...|+++.+.. +.+..+++.++..+...|+ .+|+.+++++.+.
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88888887765 6678888888888999999999999999988764 4567788889999999999 8899999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914 503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH 569 (570)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 569 (570)
.+.+..++..+...+...|++++|.++++++++.+ +.+..++..++.++.+.|+.++|++.+++.
T Consensus 833 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 833 -APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23356677888889999999999999999999876 348899999999999999999999999875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-32 Score=294.03 Aligned_cols=496 Identities=12% Similarity=0.064 Sum_probs=252.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
...|++++|+..|+.+++..| .+...+..++..+.+.|++++|+..++++.... +.+...+..+...+..
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~------- 375 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA------- 375 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH-------
Confidence 345566666666666665555 444555555555666666666666666555442 1122233333333322
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc----------------------
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGV---------------------- 187 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------------------- 187 (570)
.|++++|...|+++.+.. +.+...+..+...+...|++++|+..++.+.+..+....
T Consensus 376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 345566666655555442 113334444455555555555555555555443210000
Q ss_pred -----ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038914 188 -----VCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN 262 (570)
Q Consensus 188 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (570)
..+.+..++..++.++...|++++|.+.|+++.+.. +.+...+..++..+...|++++|...++.+.... +.+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 012333444444444555555555555555444432 1233344444444455555555555555544432 123
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING 342 (570)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (570)
..++..+...+...|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+...|..++.+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4444444555555555555555555554432 2233444445555555555555555555554432 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038914 343 YCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKA 422 (570)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 422 (570)
+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555432 1233445555555555555555555555555432 33344555555555555566666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 423 VELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
..+++.+.+.. +.+...+..++..+...|++++|...|+.+.+. .|+..++..++.++...|++++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 65555555443 344555555555566666666666666665553 244445555566666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
.+.+...+..+...|...|++++|..+++++.+.+ +++...+..++..+...|+ .+|+..+++
T Consensus 766 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 766 -HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 23345555556666666666666666666666443 3445556666666666666 555555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.2e-26 Score=247.89 Aligned_cols=505 Identities=13% Similarity=0.034 Sum_probs=357.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhH----------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSF----------------NILFGCLAKTKHYDTVLSLFKRLNSTGLFPD 109 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 109 (570)
+...+..|++++|.+.++++.+..| .+...+ ..++..+.+.|++++|++.|+++..... |+
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~ 145 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PE 145 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CC
Confidence 3444678899999999999999998 444432 4456678899999999999999997642 33
Q ss_pred HhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----
Q 038914 110 LYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI---- 185 (570)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---- 185 (570)
............. ..|+.++|+..|+++.+.. +.+...+..+...+...|++++|+..++++.......
T Consensus 146 ~~la~~y~~~~~~------~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 146 LDLAVEYWRLVAK------LPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred hHHHHHHHHHHhh------CCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 2211112222211 2479999999999999874 3356778889999999999999999999986532100
Q ss_pred --------Cccc--------------CCChhh---------------------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 186 --------GVVC--------------KPDTVT---------------------YTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 186 --------~~~~--------------~~~~~~---------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
.... .|+... .......+...|++++|+..|++....
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000 011000 012245667889999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH------------HHHHHHHHhcCChhHHHHHHHHH
Q 038914 223 NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTF------------TVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
. +.+...+..+..++.+.|++++|+..|++..+...... ...+ ......+.+.|++++|+..|+++
T Consensus 299 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 N-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 33788899999999999999999999999988643211 1111 12345677899999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------------------------
Q 038914 290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSIL------------------------------ 339 (570)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------ 339 (570)
++.. +.+...+..+..++...|++++|++.|+++.+... .+...+..+
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 9874 34566777889999999999999999999887642 233333222
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914 340 ------------INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT 407 (570)
Q Consensus 340 ------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (570)
...+...|++++|++.|++.++.... +...+..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~ 533 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVY 533 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 23445678888888888888876322 45667778888888999999999998887653 22333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCChhhHHHHHHHH
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRIL---------------------------------------KYELNIVSYNCLIDGL 448 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~ 448 (570)
.+...+...++.++|...++.+... ..+.+...+..+...+
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3333333344444444333321100 1245566677788888
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038914 449 CKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKV 527 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 527 (570)
.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|++.++.+.+. .| +..++..+..++...|++++|
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH
Confidence 89999999999999988853 445678888999999999999999999988764 34 455667778888899999999
Q ss_pred HHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCcccccchhhhh
Q 038914 528 IELLHRMDMRNV--MP---DASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 528 ~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
.++++++....- .| +...+..+...+...|+.++|+..|++
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999885421 12 234666678888899999999988875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.6e-26 Score=247.09 Aligned_cols=500 Identities=14% Similarity=0.046 Sum_probs=363.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---------
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF--------- 120 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 120 (570)
...++.+.|.+.+++++..+| .++.++..++..+.+.|+.++|.+.++++.+. .|+...+..+...+
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhh
Confidence 346799999999999999999 78999999999999999999999999999998 45544432211111
Q ss_pred -HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 121 -LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 121 -~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
...+..+...|++++|+..|+++...+ +++.. ....+.......|+.++|+..|+++.+.. +.+...+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-------P~~~~~~~~ 186 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-------PGNTGLRNT 186 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 111233556789999999999998764 23322 11122222334699999999999999975 556788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENI------------------N--------------PNAVTY--------------- 231 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~--------------- 231 (570)
+...+...|+.++|++.++++..... . |+....
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998754310 0 010000
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhH---
Q 038914 232 ------TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP-DTSTY--- 301 (570)
Q Consensus 232 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~--- 301 (570)
......+...|++++|+..|++.++... .+..++..+..++.+.|++++|+..|++.++..... ....+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 0123456778999999999999998643 367888999999999999999999999998764221 11111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038914 302 ---------NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH 372 (570)
Q Consensus 302 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 372 (570)
......+.+.|++++|+..|+++.... +.+...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 223456778999999999999999875 446777888999999999999999999999875322 222222
Q ss_pred HH------------------------------------------HHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914 373 TL------------------------------------------FLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI 410 (570)
Q Consensus 373 ~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (570)
.+ ...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22 233446788889999998888764 44567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-----------------------
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----------------------- 467 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 467 (570)
..|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88999999999999999887654 334444433333334444444444444432110
Q ss_pred ----------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 468 ----------------GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 468 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
..+.+...+..+...+...|++++|+..|+++++.. +.+...+..++..+...|++++|++.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 023445566778888889999999999999998852 335778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 532 HRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 532 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
+++.+.. +.+......+..++.+.|++++|++.|++
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9887542 23456677788888899999999988875
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-25 Score=203.05 Aligned_cols=447 Identities=15% Similarity=0.117 Sum_probs=345.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT 154 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (570)
......++.-..+.|++++|++.....-.. .|....-..++.+. +.+..+++.....-....+.. +.-..+
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~a~r~~-~q~ae~ 118 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLLAIRKN-PQGAEA 118 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhhhhhcc-chHHHH
Confidence 344667777788899999999887766554 33332222233322 222245655555444444432 334678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHH
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT-YTS 233 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 233 (570)
|..+...+...|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.+.. .|+... ...
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 8889999999999999999999998864 345889999999999999999999999988875 344333 334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcC
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD-TSTYNTLIDGYCLTG 312 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 312 (570)
+...+...|++++|...|.+.++... --...|..|...+-.+|+...|+..|++.++. .|+ ...|..|...|...+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHh
Confidence 55566668999999999988887532 13467888888888999999999999998876 343 457888899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHH
Q 038914 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT-VVTYHTLFLGLFEVHQVEHALKLF 391 (570)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 391 (570)
.++.|...+.+..... +.....+..+...|...|+++.|+..|++.++. .|+ ...|+.+..++-..|+..+|...+
T Consensus 267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 9999999999888764 345677888888899999999999999999886 343 568899999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 038914 392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA 471 (570)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 471 (570)
...+... +.-....+.+...|...|.++.|..+|....+.. +--...++.|...|-+.|++++|+..|++.++ +.|
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 9888763 4456788889999999999999999999888754 44466788899999999999999999999988 677
Q ss_pred Ch-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038914 472 DV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSI 548 (570)
Q Consensus 472 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ 548 (570)
+. ..|+.++..|-..|+.+.|+..+.+++. +.|. ...++.|...|-.+|+..+|+.-+++.++ ++|| ...+..
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cN 495 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCN 495 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhH
Confidence 75 7899999999999999999999999888 5676 45788899999999999999999999884 4676 345555
Q ss_pred HHHHH
Q 038914 549 VVDLL 553 (570)
Q Consensus 549 l~~~~ 553 (570)
++.++
T Consensus 496 llh~l 500 (966)
T KOG4626|consen 496 LLHCL 500 (966)
T ss_pred HHHHH
Confidence 55553
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-23 Score=213.02 Aligned_cols=486 Identities=11% Similarity=0.020 Sum_probs=305.4
Q ss_pred HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914 41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF 120 (570)
Q Consensus 41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (570)
.+-..|......|++++|+..|+.+++.+| .+..++..++..|.+.|++++|+..++++++. .|+...+..++..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh
Confidence 333344445567899999999999999999 67999999999999999999999999999998 67766666665433
Q ss_pred HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCcccCCC
Q 038914 121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING--------LCRTGHTIVALNLFEEMANGNGEIGVVCKPD 192 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 192 (570)
+++++|..+|+++.+.. +-+..++..+... |.+. ++|.+.++ ..... ..|+
T Consensus 122 ----------~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~------~~~~ 180 (987)
T PRK09782 122 ----------PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA------ASPE 180 (987)
T ss_pred ----------ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC------CCCC
Confidence 47888889999888773 2234444444444 4444 33444443 22211 1223
Q ss_pred hhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038914 193 TVTYTT-IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQGVQPNVVTFTVIM 270 (570)
Q Consensus 193 ~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 270 (570)
..+... +..+|.+.|++++|++++.++.+.+. .+......|...|.. .++ +++..+++.. ++-+......++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHH
Confidence 333333 36777777777777777777766542 233334444444444 233 4444443321 112344444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC--------------------------------------------------------
Q 038914 271 DELCKNGKMDGASRLLELMILRGV-------------------------------------------------------- 294 (570)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~~~~~-------------------------------------------------------- 294 (570)
..+.+.|+.++|.++++++.....
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 445555554444444433221100
Q ss_pred --------------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-------
Q 038914 295 --------------------------------------KPDTSTYNTLIDGYCLTGKIDRARELFVSMESN-G------- 328 (570)
Q Consensus 295 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------- 328 (570)
+-+......+.......|+.++|.++++..... +
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 000011111111122334444444444433221 0
Q ss_pred --------------------------------------------------------CCC--CHhhHHHHHHHHHhcCCHH
Q 038914 329 --------------------------------------------------------CMH--DVVSYSILINGYCKTKDVE 350 (570)
Q Consensus 329 --------------------------------------------------------~~~--~~~~~~~l~~~~~~~~~~~ 350 (570)
.++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 011 23344444444444 5666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
+|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|++++|...++++.
T Consensus 494 eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677766666654 344433333444456788888888888877554 3344445566677788888888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH
Q 038914 431 ILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFV 509 (570)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 509 (570)
+.. +.+...+..+.......|++++|...+++..+. .|+...+..++.++.+.|++++|+..++++... .| +..
T Consensus 570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~ 644 (987)
T PRK09782 570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSN 644 (987)
T ss_pred hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 764 334444444444555669999999999988874 567778888888999999999999999998885 45 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
.+..+..++...|++++|+..+++.++.. +-+...+..+..++...|++++|+..|++
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77788888889999999999999988653 34577888899999999999998888765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-25 Score=201.37 Aligned_cols=438 Identities=15% Similarity=0.101 Sum_probs=361.7
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
..+.|++.+|++...-..+.+| .+......+...+.+..+++...+.-..+++.. ..-..+|..+-..+.
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k------- 127 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK------- 127 (966)
T ss_pred HHhccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH-------
Confidence 3578999999999999998888 566666667778888888888877777776653 123344444544444
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-hHHHHHHHHHhcC
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-TYTTIIDGLCKKG 207 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 207 (570)
..|++++|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|...++.+ |+.. ....+...+...|
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhc
Confidence 4569999999999999874 2367889999999999999999999999999865 5544 4445666677789
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHH
Q 038914 208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTFTVIMDELCKNGKMDGASRLL 286 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 286 (570)
+.++|...|.+.++... -=...|..|...+..+|+.-.|++.|++..+. .|+ ...|..|...|...+.+++|...|
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 99999999999988632 23568999999999999999999999999985 444 478899999999999999999999
Q ss_pred HHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914 287 ELMILRGVKPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR 365 (570)
Q Consensus 287 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 365 (570)
.+.... .|+ ...+..+...|..+|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|...|.+.+....
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 998875 444 4677778888999999999999999999874 33567899999999999999999999999998632
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038914 366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLI 445 (570)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 445 (570)
....+.+.+...+...|.+++|..+|....+.. +.-...++.+...|.+.|++++|+..+++++... +.-...|+.+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmG 429 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMG 429 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcc
Confidence 256788999999999999999999999988753 3345678889999999999999999999998764 44467899999
Q ss_pred HHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914 446 DGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF 518 (570)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (570)
..|-..|+.+.|.+.+.++++ +.|.- ..++.|...|-..|+..+|+.-+++.++ ++|| +..|-.++.++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 999999999999999999998 45654 7899999999999999999999999998 6787 34565555443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4.2e-21 Score=196.24 Aligned_cols=258 Identities=8% Similarity=-0.022 Sum_probs=202.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG 377 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (570)
...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|+..|+++... +|+...+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3444555555554 67778888777777653 45444444455567899999999999998664 4455556677788
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038914 378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIA 457 (570)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (570)
+...|+.++|...++...+.. +.....+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999999998764 3333444444445556699999999999999774 5788999999999999999999
Q ss_pred HHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 458 WELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
...+++..+.. +.+...++.++.++...|++++|+..++++++. .| +...+..+..++...|++++|...+++..+
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999863 345678889999999999999999999999985 45 577889999999999999999999999996
Q ss_pred CCCCCC-HHHHHHHHHHHHccCcccccchhhhh
Q 038914 537 RNVMPD-ASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 537 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
. .|+ ..+.....+...+..+.+.+.+.++|
T Consensus 706 l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 706 D--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred c--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4 455 46777778888887777777776654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.4e-21 Score=194.83 Aligned_cols=397 Identities=13% Similarity=0.011 Sum_probs=262.1
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
.+...|..+...|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++.+++.+ +.+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHH
Confidence 3445566677788999999999999886 5677788899999999999999999999999875 456789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH------------
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF------------ 266 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 266 (570)
+..+|...|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +.+...+
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccC
Confidence 9999999999999999887765542211211 1111111111 11111111111110 0011111
Q ss_pred ---------------------HHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 038914 267 ---------------------TVIMDE---LCKNGKMDGASRLLELMILRG-VKP-DTSTYNTLIDGYCLTGKIDRAREL 320 (570)
Q Consensus 267 ---------------------~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 320 (570)
..+... ....+++++|.+.|+.++..+ ..| ....+..+..++...|++++|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111111 012356777888888777653 122 334566667777778888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 038914 321 FVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVA 400 (570)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 400 (570)
++++.... +.....|..+..++...|++++|+..|+++++.. +.+...+..+...+...|++++|...|+...+.. +
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 88877663 2345567777777778888888888888777653 2245677777777778888888888887777654 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hh----
Q 038914 401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VT---- 475 (570)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~---- 475 (570)
.+...+..+..++.+.|++++|+..|++..... +.+...++.+..++...|++++|...|++..+.. |+. ..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~ 507 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNV 507 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccH
Confidence 455666677777777888888888888777654 4556777777778888888888888888777642 221 11
Q ss_pred ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 476 ---YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 476 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
++..+..+...|++++|..+++++.... +.+...+..+...+...|++++|++++++..+.
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1112222334578888888888777642 223446677777888888888888888887643
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-21 Score=184.37 Aligned_cols=472 Identities=14% Similarity=0.085 Sum_probs=232.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-------
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN------- 123 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 123 (570)
..|+|..|+.+|..++..+| ..-+.....++.++.+.|+.+.|+..|.+++.. .|+.......+..+...
T Consensus 176 nkkdY~~al~yyk~al~inp-~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINP-ACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCc-ccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHH
Confidence 35566666666666666555 233344445555566666666666666666554 22221111111111000
Q ss_pred --------------C----------CcchhhCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038914 124 --------------G----------SSLCVESRIMEAAALFTKLRVFGCE--PDVFTYNTLINGLCRTGHTIVALNLFEE 177 (570)
Q Consensus 124 --------------~----------~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (570)
+ ..+...|++..+..+.+.+...... .-...|..+.++|-..|++++|..+|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 0 2222334445555444444433100 0112244444555555555555555555
Q ss_pred HHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 038914 178 MANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAN----DWNEAKHLFI 252 (570)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 252 (570)
..+.+. .+ +..+..|++.+.+.|+++.+...|+.+... .+-+..+...|...|...+ ..+.|..++.
T Consensus 333 s~k~~~-------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 333 SLKADN-------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHccCC-------CCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 544331 11 223334445555555555555555554443 2223344444444444332 2233333333
Q ss_pred HHHHC-------------------------------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914 253 EMMDQ-------------------------------------GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR--- 292 (570)
Q Consensus 253 ~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 292 (570)
+..+. +-.+.+...|.+...+...|++++|...|......
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 33332 22233444555555555555555555555554433
Q ss_pred CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914 293 GVKPDT------STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP 366 (570)
Q Consensus 293 ~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 366 (570)
...++. .+-..+.++.-..++.+.|.+.|..+.... +.-+..|..++.+....+...+|...+..+...+ ..
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 011111 122223334444445555555555555431 1122223333322223345555555555555432 22
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcC
Q 038914 367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCK------------NGYIVKAVELFRTLRILK 433 (570)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~ 433 (570)
++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|.+.|.+ .+..++|+++|.++....
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445555555555555555554444321 12455555555554443 234566777777766655
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 038914 434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPNFVIFN 512 (570)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~ 512 (570)
|-|...-|.+.-+++..|++.+|..+|.++.+.. .....+|..++++|..+|+|..|+++|+...+.-. ..+..+..
T Consensus 643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred -cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 5566666777777777777777777777776642 23456677777777777777777777776655422 23456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 513 TLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
.|.+++.+.|.+.+|.+.+......
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 7777777777777777777666643
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1e-20 Score=190.39 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=210.1
Q ss_pred cCCHHHHHHHHHHHHHCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914 241 ANDWNEAKHLFIEMMDQG-VQP-NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRAR 318 (570)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 318 (570)
.+++++|...|+.....+ ..| ....+..+...+...|++++|+..+++.+... +.....+..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999999864 222 45678888889999999999999999999863 224567888889999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914 319 ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH 398 (570)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (570)
..|+++.+.. +.+..++..+..++...|++++|+..|++.+.... .+...+..+...+.+.|++++|+..++...+..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 45678899999999999999999999999998632 256677888899999999999999999988763
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914 399 VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV------SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD 472 (570)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (570)
+.+...+..+..++...|++++|...|++........+.. .++.....+...|++++|..++++..+.. +.+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~ 541 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PEC 541 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCc
Confidence 5567888999999999999999999999998764221111 11222223445799999999999988853 234
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
...+..++.++...|++++|+++|+++.+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.7e-20 Score=175.51 Aligned_cols=491 Identities=14% Similarity=0.090 Sum_probs=292.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYAYNILINCFLQNGSSLCVESR 132 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (570)
++.|.+.|...++..| +|...+..-+......|+|..|+.+|..++...+ .||... .+..| +++.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI---gig~C------f~kl~~ 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI---GIGHC------FWKLGM 214 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc---hhhhH------HHhccc
Confidence 6999999999999998 8988888888888889999999999999877632 344322 22222 223468
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 133 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT---GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.+.|+..|++.++.++ .++.++-.|...-... ..+..+..++..+-..+ ..++...+.|...|.-.|++
T Consensus 215 ~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-------~~nP~~l~~LAn~fyfK~dy 286 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-------NENPVALNHLANHFYFKKDY 286 (1018)
T ss_pred hhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHhhcccH
Confidence 8888888888877632 1233333332222222 23445566666655544 34555666666666666666
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 210 DKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
..+.++...+...... .-...|-.+.++|-..|++++|..+|.+..+....--...+.-+...+.+.|+++.+...|+
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 6666666655543211 12334555666666666666666666655554211112233345555666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHHHHH-------------------------------------h
Q 038914 288 LMILRGVKPDTSTYNTLIDGYCLTG----KIDRARELFVSME-------------------------------------S 326 (570)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~-------------------------------------~ 326 (570)
.+.... +.+..+...+...|...+ ..+.|..++.+.. .
T Consensus 367 kv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 367 KVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 655541 223334444444443332 2233333333322 2
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914 327 NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK---GIRPTV------VTYHTLFLGLFEVHQVEHALKLFDEMRRN 397 (570)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (570)
.+..+.+...|.+...+...|++++|...|...... ...++. .+-..+...+-..++.+.|.++|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333445556666666666677777777777666553 111222 12223333334445555555555555443
Q ss_pred CC---------------------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHH
Q 038914 398 HV---------------------------------AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK-YELNIVSYNC 443 (570)
Q Consensus 398 ~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 443 (570)
.+ ..++..+..+...+.+...+..|..-|+.+.+.. ..+|+.+..+
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 21 1112222222223333333333333333222211 1235555555
Q ss_pred HHHHHHh------------cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038914 444 LIDGLCK------------HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF 511 (570)
Q Consensus 444 l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (570)
|...|.+ .+..++|+++|.++++.. +.|...-|.++.+++..|++.+|..+|.+..+.. .....+|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~ 683 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVW 683 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCcee
Confidence 5555542 245678999999988863 5577888899999999999999999999998863 2356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914 512 NTLMLGFIRNNETSKVIELLHRMDM-RNVMPDASTLSIVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 567 (570)
..+..+|..+|+|..|++.|+...+ ..-..+..+...|..++.+.|++.++.+...
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8999999999999999999999874 4445578899999999999999988876543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.6e-21 Score=186.61 Aligned_cols=300 Identities=16% Similarity=0.151 Sum_probs=188.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCH
Q 038914 238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKI 314 (570)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 314 (570)
+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3445555555555555555421 2334455555555555666666666555554321111 13445556666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhcCCHHHHHHH
Q 038914 315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV----VTYHTLFLGLFEVHQVEHALKL 390 (570)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 390 (570)
++|..+|+++.+.. +.+..++..++.++...|++++|++.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665542 234555666666666666666666666666654322211 1234455566667777777777
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 038914 391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM 470 (570)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (570)
++++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776543 33455666677777778888888888887776532222355677777888888888888888887774 4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR---NNETSKVIELLHRMDMRNVMPDAS 544 (570)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 544 (570)
|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 56666677788888888888888888887773 5777777777766554 457788888888888766666654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=6.6e-20 Score=183.60 Aligned_cols=332 Identities=14% Similarity=0.069 Sum_probs=242.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
....+..+.+.|++++|+.+++...... +.+...+..++.+....|++++|++.++++.... +.+...+..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4455666777888888888888888764 4446667777777778888888888888888763 3356777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKI 314 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (570)
...+...|++++|...++++.... +.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 888888888888888888888752 234566777788888888888888888877665322 22233233 346778888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHH----HHHH
Q 038914 315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH----ALKL 390 (570)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 390 (570)
++|...++.+......++...+..+..++...|++++|+..++++..... .+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 88888888877664333444455556777888888888888888887632 255667777888888888875 7888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 038914 391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM 470 (570)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (570)
++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++.+.+. .
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 88887764 4466777788888888888888888888887765 455667777788888888888888888888774 3
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 471 ADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 471 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
|+. ..+..++.++...|++++|...|+++.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 33444566778888888888888888764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=6.1e-20 Score=183.82 Aligned_cols=323 Identities=9% Similarity=0.016 Sum_probs=260.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCcchh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA-YNILINCFLQNGSSLCV 129 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 129 (570)
..|++++|+.+++.++...| .+..++..++.+....|++++|++.|++++.. .|+... +..+... +..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~-------l~~ 122 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASV-------LLK 122 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH-------HHH
Confidence 47899999999999999998 67788888889999999999999999999987 555443 3333333 334
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.|++++|+..+++++... +.+..++..++.++...|++++|...++.+.... +.+...+..+ ..+...|++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHcCCH
Confidence 579999999999999863 3356778889999999999999999999887754 2334444443 347889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH----HHHH
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG----ASRL 285 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~ 285 (570)
++|++.++.+......++...+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998876433445555666788889999999999999999864 3366778889999999999986 8999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914 286 LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR 365 (570)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 365 (570)
++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|+..|+++...+
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-- 348 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-- 348 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 99998864 3366788889999999999999999999998875 4466778888999999999999999999998763
Q ss_pred CCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914 366 PTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNH 398 (570)
Q Consensus 366 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (570)
|+. ..+..+..++...|+.++|...|+...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 334445677889999999999999988764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.8e-19 Score=184.45 Aligned_cols=405 Identities=11% Similarity=-0.014 Sum_probs=227.8
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV 152 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (570)
.+..-..-.+.+....|+.++|++++.++.... +.+...+..+...+.. .|++++|..+|++.+... +.+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~-------~g~~~~A~~~~~~al~~~-P~~~ 83 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRN-------LKQWQNSLTLWQKALSLE-PQND 83 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhC-CCCH
Confidence 444555556666677788888887777777531 2223334444434433 357778888887777652 2245
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT 232 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (570)
..+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 556667777777788888888888777754 34455 7777777777788888888887777753 22555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHh-----cCCh---hHHHHHHHHHHHC-CCCCC
Q 038914 233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNV------VTFTVIMDELCK-----NGKM---DGASRLLELMILR-GVKPD 297 (570)
Q Consensus 233 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~ 297 (570)
.+...+...+..++|+..++.+.. .|+. .....++..... .+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 666777777777777777765543 1211 011112222211 1223 5566666666643 11222
Q ss_pred Hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---Chh
Q 038914 298 TS-TY----NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP---TVV 369 (570)
Q Consensus 298 ~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 369 (570)
.. .+ ...+..+...|++++|+..|+.+...+.+........+..+|...|++++|+..|+++....... ...
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 11 11 11122334556777777777777665421111122224556777777777777777766542111 123
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----------AAN---TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE 435 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (570)
....+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+..++++.... |
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344555566677777777777776665421 011 1233344455555666666666666655543 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 436 LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.+...+..++..+...|++++|++.++++... .|+ ...+..++..+...|++++|..+++++++
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555566666666666666666666666553 233 34444555555566666666666666665
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.9e-21 Score=182.76 Aligned_cols=303 Identities=14% Similarity=0.085 Sum_probs=187.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN---AVTYTSL 234 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 234 (570)
....+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+...+..++ ..++..+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3455667788888999999988865 44566788888888888888888888888877532211 2456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHh
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCL 310 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 310 (570)
+..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 788888888888888888887652 335667777888888888888888888887765422211 123445556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038914 311 TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKL 390 (570)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 390 (570)
.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...+......++..++.++...|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677777777777766543 2234455566666666666666666666666542221123344555555555555555555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHhhhhC
Q 038914 391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK---HGRLEIAWELFSSLPRV 467 (570)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 467 (570)
++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 55555432 33333445555555555555555555555443 3444455544444332 33555555555555554
Q ss_pred CCCCCh
Q 038914 468 GLMADV 473 (570)
Q Consensus 468 ~~~~~~ 473 (570)
++.|++
T Consensus 348 ~~~~~p 353 (389)
T PRK11788 348 QLKRKP 353 (389)
T ss_pred HHhCCC
Confidence 444433
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=5.5e-19 Score=180.97 Aligned_cols=404 Identities=13% Similarity=0.039 Sum_probs=304.3
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.|+.++|++++.++.... +.+...+..+..++...|++++|+.+++++.+.. +.+...+..++.++...|++
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCH
Confidence 359999999999998632 3445568899999999999999999999999865 55677888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++|+..++.+
T Consensus 100 ~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999999987 344666 888999999999999999999999997433 5566677888888899999999988876
Q ss_pred HHCCCCCCH------hhHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHh-hH----HHHHHHHHhcCCH
Q 038914 290 ILRGVKPDT------STYNTLIDGYCL-----TGKI---DRARELFVSMESN-GCMHDVV-SY----SILINGYCKTKDV 349 (570)
Q Consensus 290 ~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~ 349 (570)
.. .|+. .....+++.... .+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 54 2221 112222222221 2234 7788888888754 1122221 11 1113345677999
Q ss_pred HHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 350 EEGLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAA---NTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 350 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
++|+..|+.+.+.+.. |+. ....+...+...|++++|+..|+.+.+..... .......+..++...|++++|..+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999987532 322 23335778999999999999999987653211 134455666778899999999999
Q ss_pred HHHHHHcCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 426 FRTLRILKY-----------ELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 426 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
++.+..... .|+ ...+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999886531 122 2345567778899999999999999998852 4566788999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 492 AHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
|++.+++++.. .|+ ...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 412 A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 412 AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999984 565 566777778899999999999999999964 46655555554444
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.8e-18 Score=173.38 Aligned_cols=440 Identities=12% Similarity=0.015 Sum_probs=285.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
..+.|+++.|+..|+.+++.+| .+......++..+...|+.++|+..++++. .|+...+..++... ..+.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA----~ly~ 113 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGP--LQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA----RAYR 113 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCc--cchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH----HHHH
Confidence 3568899999999999998888 443222377778888899999999999988 23322222222110 1122
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
..|++++|+++|+++++..+ .+..++..++..+.+.++.++|++.++++.... |+...+..++..+...++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHhcch
Confidence 34699999999999988743 246667777888888999999999999988754 555555555555555666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHh---------cC
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF--TVIMDELCK---------NG 277 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~g 277 (570)
..+|++.++++.+.+ +.+...+..++..+.+.|-...|.++..+-... ..+....+ ...+.-.++ ..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 766999999998874 446777888888888888888888776653321 11111111 000001111 11
Q ss_pred C---hhHHHHHHHHHHHC-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914 278 K---MDGASRLLELMILR-GVKPDT-S----TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKD 348 (570)
Q Consensus 278 ~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (570)
+ .+.|+.-++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 23344445554442 111221 1 1223345666778888888888888877655556677777888888888
Q ss_pred HHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------CcCH---HHHHHH
Q 038914 349 VEEGLNLYRKMLSKGI-----RPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----------AANT---YIYTTF 409 (570)
Q Consensus 349 ~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l 409 (570)
+++|+.+|+.+..... .++......|..++...+++++|..+++.+.+..+ .|+. .....+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 8888888888766421 22333346777788888888888888888776321 1111 233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914 410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM 489 (570)
Q Consensus 410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (570)
+..+...|++.+|++.++.+.... |-|......+...+...|.+..|+..++.+... -+-+..+....+.++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhH
Confidence 566677788888888888776655 667777777777788888888888888666553 122345666677777777888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHH
Q 038914 490 DKAHGLFLDMEAKGLEPNFVIFNT 513 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~ 513 (570)
.+|..+.+.+.+. .|+......
T Consensus 501 ~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 501 HQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHHhh--CCCchhHHH
Confidence 8887777777763 455444333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=9.9e-18 Score=168.17 Aligned_cols=442 Identities=11% Similarity=0.013 Sum_probs=325.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
.+......+....+.|+++.|+..|+++++. .|+. ..+ .++..+... |+.++|+..+++... +-+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~-------G~~~~A~~~~eka~~---p~n 99 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWA-------GRDQEVIDVYERYQS---SMN 99 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHc-------CCcHHHHHHHHHhcc---CCC
Confidence 4445555666778999999999999999988 5554 233 555555554 699999999999983 213
Q ss_pred cchHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 152 VFTYNTL--INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV 229 (570)
Q Consensus 152 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 229 (570)
...+..+ ...+...|++++|+++|+++.+.+ +.+...+..++..+...++.++|++.++++... .|+..
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 3333344 568888899999999999999986 455777888899999999999999999999886 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh------HHH
Q 038914 230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTST------YNT 303 (570)
Q Consensus 230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~ 303 (570)
.+..++..+...++..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+.... ...
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence 56555555555677777999999999974 336777888889999999999998877653321 1111111 111
Q ss_pred HHHHH---H--hcC---CHHHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914 304 LIDGY---C--LTG---KIDRARELFVSMESN-GCMHD-----VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369 (570)
Q Consensus 304 l~~~~---~--~~~---~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (570)
.++.- . ... -.+.|+.-++.+... +..|. .....-.+-++...+++.++++.|+.+...+.+....
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 11110 0 111 245566666666552 11122 1223345667888999999999999999887665566
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY---------- 434 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------- 434 (570)
+...+..+|...+++++|+.++..+..... +++......|..++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 788999999999999999999999876531 22334456788899999999999999999987321
Q ss_pred -CCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH
Q 038914 435 -ELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFV 509 (570)
Q Consensus 435 -~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 509 (570)
.|+. ..+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++.+... .| +..
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~ 485 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLI 485 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHH
Confidence 1111 233456777889999999999999998753 557888999999999999999999999877764 55 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS 544 (570)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 544 (570)
+....+.++...|++++|..+.+++... .|+..
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 6678888999999999999999999854 35543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3.9e-19 Score=156.03 Aligned_cols=479 Identities=14% Similarity=0.129 Sum_probs=315.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHH
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIM 134 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (570)
+.+|+..|+-+++..-.+.....-..++..+.+.+++.+|+++|+-++.+ .|+. .-..-|..+...|..+.+.|.++
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsi-nk~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSI-NKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--cccc-chhhHHHHHhhcCeeEEecccch
Confidence 45666666666554432233333445667788888999999999888876 3322 12234566777888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cCCChhhHHHHHHHHHhcC-----
Q 038914 135 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVV--CKPDTVTYTTIIDGLCKKG----- 207 (570)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g----- 207 (570)
.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.++....++.... +++....-..|+.--.+..
T Consensus 294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 999999998876 5676665555656666899999999999998765332111 1221111122222222111
Q ss_pred ---CHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 208 ---FVDKAKELFL---KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 208 ---~~~~a~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
+-..|++.+- +++..-+.|+... + .+-+++.++.-....+. ...-..-...+.+.|+++.
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la--~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELA--IDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhh--hhhhhhHHHHHHhccCHHH
Confidence 1111222221 1111111122100 0 01111111111110000 0011112335778999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCL--TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKM 359 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (570)
|.++++-+.+.+-......-+.|...+.- -.++..|.+.-+..+..+ .-+......-.......|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999988776433333333333332222 346777877777766543 224444444445566789999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 038914 360 LSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV 439 (570)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 439 (570)
+..... ....+..+...+-..|+.++|+..|-.+... +..+..++..+...|....+..+|++++.+.... ++.|+.
T Consensus 517 l~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 517 LNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 875222 2233344445667889999999999776543 2446778888899999999999999999888665 477899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML-GF 518 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~ 518 (570)
++..|...|-+.|+-.+|.+.+-+-.+. ++-+..+...|..-|....-+++++.+|+++.- +.|+..-|..++. ++
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 9999999999999999999988777665 566888888899999999999999999999876 7899999977765 56
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 560 (570)
.+.|++++|..++++..+. ++.|...+..++..+...|..+
T Consensus 671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 6799999999999999864 6788999999999988887644
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.7e-17 Score=141.84 Aligned_cols=462 Identities=13% Similarity=0.120 Sum_probs=353.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS 125 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (570)
|....+++++..|..+|++++..+- .+...|...+.+-.+++....|..++++++..-+..|...|.-+... -.
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE-E~--- 153 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME-EM--- 153 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH-HH---
Confidence 3344568889999999999998875 88899999999999999999999999999998555555554433321 11
Q ss_pred cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914 126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK 205 (570)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (570)
.|++.-|.++|++.... .|+..+|++.|..-.+....+.|..++++..- +.|++.+|......=.+
T Consensus 154 ----LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 154 ----LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEK 219 (677)
T ss_pred ----hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHh
Confidence 36999999999999876 89999999999999999999999999999987 56999999999999999
Q ss_pred cCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhH
Q 038914 206 KGFVDKAKELFLKMKDE-N-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 281 (570)
.|+...|.++|+...+. | -..+...+.++...-..+..++.|.-+|+-.+.. ++.+ ...|......=-+-|+...
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence 99999999999988764 1 1123445566666666778899999999988875 3323 3455555554445676555
Q ss_pred HHHH--------HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHH--------HHHH
Q 038914 282 ASRL--------LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV-VSYSILI--------NGYC 344 (570)
Q Consensus 282 a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~ 344 (570)
.... ++.+++.+ +.|-.+|-..++.-...|+.+...++|+.++..-.+.+. ..|...| -.-.
T Consensus 299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34455543 557778888888888899999999999999886422221 1122222 1123
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914 345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF----EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV 420 (570)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (570)
...+.+.+.++|+..++. ++....|+..+-..|+ ++.+...|.+++.... |..|...++...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 578899999999999985 4445667776655554 5788999999998876 45788899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL-MADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
.+..++++.++.+ |-+..+|......-...|+.+.|..+|.-+++... ......|-..|..-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999887 67888999998888899999999999999987421 111234566666667899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 038914 500 EAKGLEPNFVIFNTLMLGFI-----RNN-----------ETSKVIELLHRMD 535 (570)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 535 (570)
++. .+...+|.+...--. ..| ....|..+|+++.
T Consensus 534 L~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 534 LDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 984 455667766654333 334 5567888888876
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=2.5e-15 Score=138.30 Aligned_cols=482 Identities=12% Similarity=0.076 Sum_probs=343.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
..++++|+.++.++.+-=| .+...|.. |.+..-|+.|..++.++.+. ++.+...|...-..=-. .|
T Consensus 389 lE~~~darilL~rAveccp--~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~-------ng 454 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCP--QSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEA-------NG 454 (913)
T ss_pred ccChHHHHHHHHHHHHhcc--chHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHh-------cC
Confidence 3466778888888887766 56665554 44556778888888888765 23344444433322222 35
Q ss_pred CHHHHHHHHHHHH----hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 132 RIMEAAALFTKLR----VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 132 ~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
+.+...++..+-+ ..|+..+...|..=...|-..|..-.+..+.......+.+. ..--.+|..-.+.|.+.+
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe----ed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE----EDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc----chhHhHHhhhHHHHHhcc
Confidence 7777777766543 34666677777777777777788877777777777655221 122457888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
-++-|..+|...++. ++-+...|...+..--..|..++...+++++... .+-....|......+...|+...|..++.
T Consensus 531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 888888888888775 3446677777777777778888888888888876 33355666777777788889999999888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
++.+.. +.+...+...+.......+++.|..+|.+.... .++..+|..-+...--.+..++|++++++.++. .|+
T Consensus 609 ~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 609 QAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 888764 236677777888888888899999988888775 356777777777777778888999988888875 334
Q ss_pred -hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914 368 -VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID 446 (570)
Q Consensus 368 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 446 (570)
...|..+.+.+-+.++.+.|...|..-.+. ++.....|..+...-.+.|.+-.|..++++....+ |-+...|...++
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 346666777777888888888888766554 35556677777777778888889999998887766 677888888888
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSK 526 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (570)
+-.+.|+.+.|..+..++++. ++.+...|..-|....+.++-......+++. ..|+.....+...+....++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHH
Confidence 889999999998888887775 3445566777776666666655555444433 3466667777777777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914 527 VIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 527 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 567 (570)
|.++|.+.++.+ +..-.+|..+.....+.|..++-.+.|+
T Consensus 836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888543 2235677777777777776665555444
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=8.7e-16 Score=134.23 Aligned_cols=309 Identities=15% Similarity=0.210 Sum_probs=213.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----------------------Ccchhh
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG----------------------SSLCVE 130 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~ 130 (570)
..+..=+.++. +..+|+.+.+.-+|+.|.+.|+..+...-..++....... ..-++.
T Consensus 114 ~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 114 LQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 44455555554 4577999999999999999998877766555554332221 122333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD 210 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (570)
|.+.+ ++-+.. +.+..++..+|.++|+-...+.|.+++++..... .+.+..+||.+|.+-.-...
T Consensus 193 G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~~~-- 257 (625)
T KOG4422|consen 193 GAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYSVG-- 257 (625)
T ss_pred ccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhhcc--
Confidence 33333 222222 3356788888888888888888888888887766 56778888888876554332
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH-HHHH
Q 038914 211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNE----AKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG-ASRL 285 (570)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~ 285 (570)
.+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..+
T Consensus 258 --K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 258 --KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred --HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 6778888888888888888888888888887765 45677788888888888888888888888777644 4444
Q ss_pred HHHHHHC----CC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHhcCCHH
Q 038914 286 LELMILR----GV----KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNG----CMHD---VVSYSILINGYCKTKDVE 350 (570)
Q Consensus 286 ~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~ 350 (570)
+.++... .+ +.|...|...+..|.+..+.+.|.++..-+.... +.++ ..-|..+....++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444321 12 2234556677777778888888877766554321 1122 122455666777777888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 038914 351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV 399 (570)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 399 (570)
.-...|+.|+-.-.-|+..+...++.+....+.++-.-+++.++...|.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 8888888888776777888888888888888888888888888776653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=5.6e-15 Score=141.31 Aligned_cols=466 Identities=13% Similarity=0.055 Sum_probs=317.1
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 129 (570)
.+|++++|..++..+++++| .+..+|..|+.+|-.+|+.+++...+-.+... .| |...|..+-.... .
T Consensus 151 arg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~-------~ 219 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSE-------Q 219 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH-------h
Confidence 46899999999999999999 89999999999999999999999988887766 44 3344444443333 3
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh----hHHHHHHHHHh
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV----TYTTIIDGLCK 205 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 205 (570)
+|.+++|.-.|.++++.. +++...+-.-+..|-+.|+...|...|.++.... .+.|.. .-...+..+..
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHH
Confidence 579999999999999885 3355555567788999999999999999999875 112222 22334566777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------------
Q 038914 206 KGFVDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-------------------------- 258 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------- 258 (570)
.++-+.|.+.++.....+ -..+...++.++..+.+...++.+...........
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 788899999998887632 23356678889999999999999998888776621
Q ss_pred -CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914 259 -VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG--VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS 335 (570)
Q Consensus 259 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (570)
..++... ..++-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.+|..+.......+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 1122222 123334445555555555555565555 333456788899999999999999999999998766667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh--------CCCCcCHHHHH
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRR--------NHVAANTYIYT 407 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~ 407 (570)
|-.+..+|...|.++.|++.|.+.+... +-+...-..|...+.+.|+.++|.+.+..+.. ....|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 9999999999999999999999999862 22445666777788899999999999988542 23345555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhh-
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRILK----------------------YELNIVSYNCLIDGLCKHGRLEIAWELFSSL- 464 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 464 (570)
.....+.+.|+.++=..+...+.... .+-.......+..+-.+.++......-...-
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 66677778888776544443332110 0111122222333333333322222111111
Q ss_pred -----hhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHHhcCCHHHHHHHHH
Q 038914 465 -----PRVGLMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPNFV---IF-NTLMLGFIRNNETSKVIELLH 532 (570)
Q Consensus 465 -----~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~l~~~~~~~g~~~~a~~~~~ 532 (570)
...++..+. ..+..++.++++.+++++|+.+...+..... .-+.. .+ ...+.+.+..+++..|...+.
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111122221 2345567778888888888888887776421 11222 22 334456677888888888888
Q ss_pred HHHh
Q 038914 533 RMDM 536 (570)
Q Consensus 533 ~~~~ 536 (570)
.|..
T Consensus 691 ~~i~ 694 (895)
T KOG2076|consen 691 SVIT 694 (895)
T ss_pred HHHH
Confidence 8873
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.8e-14 Score=132.75 Aligned_cols=452 Identities=12% Similarity=0.032 Sum_probs=298.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038914 88 TKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH 167 (570)
Q Consensus 88 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 167 (570)
..+.+.|+-++.++.++ -|.+. .+.-+++++ ..|+.|..++.+..+. ++.+..+|......--.+|+
T Consensus 389 lE~~~darilL~rAvec--cp~s~---dLwlAlarL-------etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQSM---DLWLALARL-------ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccchH---HHHHHHHHH-------HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence 34555566666666665 33222 122333333 3677777777777654 45566677666666666777
Q ss_pred hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHH
Q 038914 168 TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP--NAVTYTSLICGFCYANDWN 245 (570)
Q Consensus 168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 245 (570)
.+....++++....-...| +..+...|..=...|-..|..-.+..+....+..|+.. -..+|..-...|.+.+.++
T Consensus 456 ~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred HHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 7777777666543211111 45566677777777777777777777777777666542 2356777777777777788
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
-|..+|...++. .+.+...|......--..|..++...+|+++... ++.....|......+-..|+...|..++..+.
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888888777765 2334556666665555667777777788777765 23333445555566666788888888888777
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 038914 326 SNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYI 405 (570)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 405 (570)
+.. +.+...|...+.....+.+++.|..+|.+.... .|+...|..-+...--.+..++|++++++.++. ++.-...
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl 687 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL 687 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence 764 336667777777777788888888888777664 456666666666666677788888888777765 2444556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN 485 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (570)
|..+.+.+.+.++.+.|...|..-.+.. |.....|..+...-.+.|.+-.|..+++...-.+ +.+...|...+++-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 7777777777778888777776655543 5556677777777777778888888888776654 4466777778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchh
Q 038914 486 DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQ 565 (570)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 565 (570)
.|+.+.|..+..++++. .+.+...|..-+...-+.++--.....+++- .-|+...-.+...|....++++|.+-
T Consensus 766 ~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred cCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777665 4555666777676666666644444444433 45666777777777777777777766
Q ss_pred hhh
Q 038914 566 FKR 568 (570)
Q Consensus 566 ~~~ 568 (570)
|.|
T Consensus 840 f~R 842 (913)
T KOG0495|consen 840 FER 842 (913)
T ss_pred HHH
Confidence 654
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.9e-17 Score=144.41 Aligned_cols=458 Identities=13% Similarity=0.085 Sum_probs=308.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC----
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD---- 151 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 151 (570)
.....|+.-|..+..+.+|+..|+-+++....|+...+. ...|.++.+..++.+|++.|+-.+..-+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk------mnigni~~kkr~fskaikfyrmaldqvpsink~~r 275 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK------MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMR 275 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee------eeecceeeehhhHHHHHHHHHHHHhhccccchhhH
Confidence 345567777888889999999999999998888875432 3446788888999999999998776521111
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT- 230 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 230 (570)
..+.+.+...+.+.|++++|+..|+...+.. |+..+-..|+-++...|+.++..+.|.+|+.....||..-
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 2356677778899999999999999998854 7877767777778888999999999999986532222221
Q ss_pred -------HHHHHHHHHhcCCH--------HHHHHHH---HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 231 -------YTSLICGFCYANDW--------NEAKHLF---IEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 231 -------~~~l~~~~~~~~~~--------~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
-..|+.--.+...+ ..|.... -+++.--+.|+-. .| .+-+++.++.-...
T Consensus 348 i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 348 IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHA 415 (840)
T ss_pred cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhh
Confidence 12222221111111 1111111 1111111111110 01 11122222221111
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCChhh
Q 038914 293 GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC--KTKDVEEGLNLYRKMLSKGIRPTVVT 370 (570)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (570)
+.-...-..-.--+.+.|+++.|+++++-..+.+-......-+.+-..+. .-.++..|.++-+..+... .-+...
T Consensus 416 --~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a 492 (840)
T KOG2003|consen 416 --ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAA 492 (840)
T ss_pred --hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHH
Confidence 00011111123356789999999999998877643333333333332222 2446778888777766542 123344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK 450 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (570)
...-.......|++++|.+.+++.+.++.. ....+..+.-.+...|++++|+..|-++...- ..+..++..+...|..
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYEL 570 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 444444556789999999999999876422 23333344456778899999999998876432 4577888889999999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL 530 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (570)
..+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.+.+-.--.. ++-+..+...|..-|....-+++++.+
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988775 5667788999999999999999999876554443 455788888888888888889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHHccCcccccchhhhh
Q 038914 531 LHRMDMRNVMPDASTLSIVV-DLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 531 ~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~ 568 (570)
|++.. -+.|+..-|..++ +++.+.|++.+|.+.|+.
T Consensus 649 ~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 649 FEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99987 3689999998655 557789999999999874
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3e-15 Score=130.88 Aligned_cols=430 Identities=16% Similarity=0.197 Sum_probs=303.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChhHH-HHHHHHHHhCCCCCCcc-------------cCCChh
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLING--LCRTGHTIVA-LNLFEEMANGNGEIGVV-------------CKPDTV 194 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~-------------~~~~~~ 194 (570)
|++..+.-+|+.|...|++.+...-..|.+. |....+..-| .+.|-.|.+.+...+.+ .+.+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 6999999999999999877776665555543 2233322211 23344444433222221 355678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038914 195 TYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELC 274 (570)
Q Consensus 195 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (570)
++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-..+ .++..+|......||..|+|.++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 9999999999999999999999999888788899999999876544333 788999999999999999999999999
Q ss_pred hcCChhH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHhC----C----CCCCHhhHHHHHH
Q 038914 275 KNGKMDG----ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKID-RARELFVSMESN----G----CMHDVVSYSILIN 341 (570)
Q Consensus 275 ~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~----~----~~~~~~~~~~l~~ 341 (570)
+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++.. .+..++.++... . .+.+...|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998875 5678889999999999999999999998888764 455566655432 1 1235566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914 342 GYCKTKDVEEGLNLYRKMLSKG----IRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC 414 (570)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (570)
.|....+.+-|.++-.-+.... +.|+ ..-|..+....+.....+.....|+.|.-+-.-|+..+...++++..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 8889999999988877665431 2222 23456677778888999999999999998878889999999999998
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HhhhhCCCCCCh
Q 038914 415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RL--------E-----IAWELF-------SSLPRVGLMADV 473 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~~~~ 473 (570)
-.+.++-.-+++..++..|...+......++..+++.. +. . -|..++ .++.+ .....
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~ 522 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPA 522 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCCh
Confidence 89999988888888877664444444333333333332 11 0 011111 11222 23445
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKG----LEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS-TLSI 548 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ 548 (570)
...+..+-.+.+.|+.++|.+++.-+.+.+ ..|.......++..-.+..+...|..+++-|...++ |..+ .-..
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~-~~~E~La~R 601 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL-PICEGLAQR 601 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-hhhhHHHHH
Confidence 567777788899999999999999886543 223344455677777888999999999999987664 3333 4444
Q ss_pred HHHHHHccCcccccchhhh
Q 038914 549 VVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 549 l~~~~~~~g~~~~a~~~~~ 567 (570)
+.+.|.-+....+++.-+.
T Consensus 602 I~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 602 IMEDFAINQEQKEALSNLT 620 (625)
T ss_pred HHHhcCcCHHHHHHHhhhh
Confidence 4444443333335554443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.1e-14 Score=124.93 Aligned_cols=462 Identities=10% Similarity=0.094 Sum_probs=339.7
Q ss_pred HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHH
Q 038914 60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAAL 139 (570)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~ 139 (570)
+-|+..++.+. -+...|...+.--..+++++.|..+|++++... ..+...+...+..=.+ ...+..|..+
T Consensus 60 kefEd~irrnR--~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emk-------nk~vNhARNv 129 (677)
T KOG1915|consen 60 KEFEDQIRRNR--LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMK-------NKQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHh-------hhhHhHHHHH
Confidence 44555555554 677788888888888999999999999999763 2333344444433333 3578889999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 140 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKM 219 (570)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 219 (570)
+++.+..= +.-...|.-.+..--..|+...|.++|++-.. ..|+..+|.+.+..=.+.+.++.|..++++.
T Consensus 130 ~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 130 WDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99888752 22234566666666678999999999999988 5799999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914 220 KDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-GV-QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD 297 (570)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 297 (570)
.-. .|++.+|......-.+.|....+..+|+..++. |. .-+...+.+....=..+..++.|.-+|+-.++. ++.+
T Consensus 201 V~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~ 277 (677)
T KOG1915|consen 201 VLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKG 277 (677)
T ss_pred hee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 874 689999999999999999999999999988764 11 112334455555555677889999999998886 3333
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 298 --TSTYNTLIDGYCLTGKIDRAREL--------FVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 298 --~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
...|..+...--+-|+....... ++.+.+.+ +.|-.+|-..++.-...|+.+...++|++++.. ++|-
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~ 355 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPA 355 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCch
Confidence 34455555444455664433322 34445444 567888999999889999999999999999986 4442
Q ss_pred hh--h---HHHHH--HHH---hhcCCHHHHHHHHHHHHhCCCCcCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914 368 VV--T---YHTLF--LGL---FEVHQVEHALKLFDEMRRNHVAANTYIYTT----FIDGLCKNGYIVKAVELFRTLRILK 433 (570)
Q Consensus 368 ~~--~---~~~l~--~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~ 433 (570)
.. . |..+- -++ ....+.+.+.++++..++. ++-...++.. ......++.++..|.+++..++ |
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G 432 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--G 432 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--c
Confidence 21 1 11111 111 3578999999999998874 3444444443 3444557889999999999887 4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH
Q 038914 434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG-LEPNFVIFN 512 (570)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~ 512 (570)
..|-..+|-..+..-.+.++++.+..++++.+..+ +-|..+|...+..-...|+.+.|..+|.-+++.. +......|.
T Consensus 433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 47888999999999999999999999999999964 4466888888888888999999999999998752 222345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 513 TLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD 551 (570)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 551 (570)
..+..-...|.++.|..+++++++.. +-..+|..+..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 77777778999999999999999653 33335544433
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-14 Score=129.33 Aligned_cols=431 Identities=15% Similarity=0.104 Sum_probs=267.1
Q ss_pred HHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914 38 LRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117 (570)
Q Consensus 38 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 117 (570)
....+...|.-.+++|+|++|++.|++++...| ..+.-|...+.+|...|+|++.++---++++. .|+-.
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p--~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~------ 183 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP--DEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYV------ 183 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC--CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHH------
Confidence 345577789999999999999999999999988 44677889999999999999999999999887 45432
Q ss_pred HHHHhcCCcchhhCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914 118 NCFLQNGSSLCVESRIMEAAALFTKLRVF-GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY 196 (570)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (570)
.++.+....+-..|++++|+.-..-.--. |+. +..+--.+=+.+- ..|..-..+-.+.+ +..+-|.....
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~n---r~p~lPS~~fi 254 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKEN---RPPVLPSATFI 254 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhccc---CCCCCCcHHHH
Confidence 22222223333446777776543322111 111 1111111111111 11222222222211 11134444443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCCC---------h
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQ---GVQPN---------V 263 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~ 263 (570)
.+....+...-. ..+...+.+.|...-..+=..+.. ...+..|.+.+.+-... ....+ .
T Consensus 255 ~syf~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 255 ASYFGSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred HHHHhhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 333333221100 000000000010000000000100 01223333333221110 00011 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914 264 VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY 343 (570)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (570)
.+.......+.-.|+.-.|..-|+..+..... +...|..+..+|....+.++....|+...+.+ +.++.+|..-.+++
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHH
Confidence 22223333445578888999999999887433 33347777888899999999999999998886 44788888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038914 344 CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAV 423 (570)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 423 (570)
.-.++++.|..-|++.+..... +...|..+.-+..+.++++++...|++..+. ++..+..|+.+...+...+++++|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 8899999999999999886322 4566777777777889999999999998876 5777889999999999999999999
Q ss_pred HHHHHHHHcCCC-----CChh--hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 424 ELFRTLRILKYE-----LNIV--SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF 496 (570)
Q Consensus 424 ~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (570)
+.|+..++.... .+.. +.-.++.. .-.+++..|..++.++.+.. +.....|..|...-...|+.++|+++|
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999998876311 1111 11222222 23488999999999998853 224567889999999999999999999
Q ss_pred HHHHH
Q 038914 497 LDMEA 501 (570)
Q Consensus 497 ~~~~~ 501 (570)
++...
T Consensus 561 Eksa~ 565 (606)
T KOG0547|consen 561 EKSAQ 565 (606)
T ss_pred HHHHH
Confidence 88765
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.3e-13 Score=118.36 Aligned_cols=380 Identities=11% Similarity=0.031 Sum_probs=267.1
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 228 (570)
..|...+-..+..+.+.|....|++.|....... |-.-.+|..|...+. +.+.+ ..... +.+.|.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~ 225 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DIEIL----SILVV-GLPSDM 225 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccc
Confidence 4466666666677788899999999999988754 333444554444332 22222 22221 122222
Q ss_pred HHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHH
Q 038914 229 VTYT--SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV--KPDTSTYNTL 304 (570)
Q Consensus 229 ~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 304 (570)
.... -+..++....+.+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+.+. --|..+|..+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 2121 23455666678888888888888888776666666666777888999999999999988731 1144566665
Q ss_pred HHHHHhcCCHHHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC
Q 038914 305 IDGYCLTGKIDRARELFVS-MESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ 383 (570)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (570)
+..- ..+-. +..+.+ +...+ +--+.|...+.+.|.-.++.++|+..|++.++.+.. ....++.+..-|...++
T Consensus 306 LYv~--~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 306 LYVK--NDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHH--hhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcc
Confidence 5432 22211 122211 11111 234566777888888899999999999999987433 45678888888999999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 038914 384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSS 463 (570)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (570)
...|+..++...+-+ +.|...|..+.++|.-.+...-|+-+|+++.... |.|...|.+|+.+|.+.++.++|.+.|..
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999998875 6788899999999999999999999999998876 77899999999999999999999999999
Q ss_pred hhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 464 LPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
....| ..+...+..|+..|-+.++.++|...|++.++. |...+ ..+..-|..-+.+.+++++|..+.......
T Consensus 458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 98865 335578899999999999999999999887662 32222 223333556677899999998887777643
Q ss_pred CCCCCHHHHHHHHHHHH
Q 038914 538 NVMPDASTLSIVVDLLV 554 (570)
Q Consensus 538 ~~~p~~~~~~~l~~~~~ 554 (570)
.+..+--..++.-+.
T Consensus 537 --~~e~eeak~LlReir 551 (559)
T KOG1155|consen 537 --ETECEEAKALLREIR 551 (559)
T ss_pred --CchHHHHHHHHHHHH
Confidence 455555555554443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=8.2e-14 Score=133.52 Aligned_cols=365 Identities=15% Similarity=0.124 Sum_probs=217.1
Q ss_pred cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914 126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK 205 (570)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (570)
.+...|++++|..++.++++.. +.+...|..|..+|-+.|+.+++...+-.+...+ +.|...|..+.....+
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHh
Confidence 3445577777777777777664 3456667777777777777777777766666554 4556777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCChhH
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF----TVIMDELCKNGKMDG 281 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 281 (570)
.|++++|.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.+..-+ ...++.+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777777777763 335555555566677777777777777777765332222222 223455566666677
Q ss_pred HHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCH
Q 038914 282 ASRLLELMILR-GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---------------------------HDV 333 (570)
Q Consensus 282 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~ 333 (570)
|.+.++..... +-..+...++.++..+.+...++.+............. ++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 77777766652 12234455667777777777777777666665541111 111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIR--PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID 411 (570)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (570)
.+ ..+.-++...+..+....+...+....+. -+...|..+..++...|++..|+.++..+.......+..+|..+..
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 11 11222333344444444444444444322 2344566666777777777777777777766544445566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh--------CCCCCChhhHHHHHHHH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR--------VGLMADVVTYNIMIHGL 483 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 483 (570)
+|...|.++.|.+.++.+.... |.+..+-..|...+.+.|+.++|.+.+..+.. ....|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 7777777777777777766654 44455555666666777777777777766542 11223333333444455
Q ss_pred HhcCChhHHHHHHHHHHH
Q 038914 484 CNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~ 501 (570)
...|+.++=+.....|+.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 566666665554444443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2e-14 Score=127.95 Aligned_cols=392 Identities=15% Similarity=0.079 Sum_probs=207.0
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTY 196 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (570)
.+-..|.-+.+.|.+++|++.|.+.++. .|+ +..|.....+|...|++++..+...+.++.+ |+ +..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--------P~Y~KAl 186 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--------PDYVKAL 186 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--------cHHHHHH
Confidence 3344556677788999999999999987 566 7778889999999999999999999998854 55 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHH
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKM-KDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG---VQPNVVTFTVIMDE 272 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~ 272 (570)
..-..++-..|++++|+.-..-. +..|+. |..+--.+=+.+-+ .+..-.++-.+.+ +-|+.....+....
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 77788888888888876433221 111221 11111111111111 1111111111111 12222222222211
Q ss_pred HHh-------------------------cC---ChhHHHHHHHHHHHC-CCCC--C---------HhhHHHHHHHHHhcC
Q 038914 273 LCK-------------------------NG---KMDGASRLLELMILR-GVKP--D---------TSTYNTLIDGYCLTG 312 (570)
Q Consensus 273 ~~~-------------------------~g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~~ 312 (570)
+.. .+ .+..|...+.+-... ...+ + ..+.......+.-.|
T Consensus 261 F~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 261 FHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred ccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 110 00 112222222111110 0000 1 111111112233455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 038914 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFD 392 (570)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (570)
+.-.|..-|+.++..... +...|-.+..+|...++.++..+.|.+..+.+.. ++.+|..-.+...-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655322 2222555555666666666666666666655332 45556666666666666666666666
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914 393 EMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD 472 (570)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (570)
...... +.+...+..+.-+..+.+.++++...|+..++. +|..+..|+.....+...++++.|.+.|+..++. .|+
T Consensus 419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~ 494 (606)
T KOG0547|consen 419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPR 494 (606)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccc
Confidence 665543 233444444444445566666666666666543 2455566666666666666666666666666552 232
Q ss_pred -------hhhH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 473 -------VVTY--NIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 473 -------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
...+ -.++ .+...+++..|..+++++.+. .| ....|..|.....+.|+.++|+++|++..
T Consensus 495 ~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111 111236666666666666663 33 34456666666666666666666666655
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-13 Score=119.76 Aligned_cols=358 Identities=10% Similarity=0.002 Sum_probs=263.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--H
Q 038914 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF--T 267 (570)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 267 (570)
..|...+-.....+.+.|....|++.|...... .+-.-.+|..|.... .+. ++....... ...+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~----e~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDI----EILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chH----HHHHHHHhc-CcccchHHHHH
Confidence 345566666667788899999999999988875 233444444444332 222 223333322 22222222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHh
Q 038914 268 VIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM--HDVVSYSILINGYCK 345 (570)
Q Consensus 268 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 345 (570)
.+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.++- .|..+|..++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 345567777788999999999998888777777777777788899999999999999987421 15667776663 33
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
..+.. +..+-.-...--+-.+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|++.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 33222 1122111111012245677788888999999999999999999875 45667888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE 505 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (570)
++++++.+ |-|-..|-.|+++|.-.+...-|+-.|+++.... +.|...|.+|+.+|.+.++.++|++.|.++...|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99999987 7899999999999999999999999999999852 44678999999999999999999999999998753
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHccCcccccch
Q 038914 506 PNFVIFNTLMLGFIRNNETSKVIELLHRMDM----RNVMPD--ASTLSIVVDLLVKNEISLNSIP 564 (570)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 564 (570)
.+...+..+...|-+.++.++|...+++-++ .|...+ ......+..-+.+.+++++|-.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3668899999999999999999999998874 233222 3333445556777888887754
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1e-14 Score=123.02 Aligned_cols=298 Identities=17% Similarity=0.163 Sum_probs=224.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS 125 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (570)
|...+-..+++.|...|-.+++.+| .+.++..+|+..+.+.|+.+.|+.+.+.+.+. ||. |+..-+.+...+|.
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl~qL~~ 115 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLALQQLGR 115 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHHHHHHH
Confidence 3334456789999999999999888 78889999999999999999999999999874 443 45555556667778
Q ss_pred cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC----hhhHHHHHH
Q 038914 126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD----TVTYTTIID 201 (570)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 201 (570)
.|...|-+|.|..+|..+.+.+ .--..+...|+..|-+..++++|+++-+++.+.++ .+. ...|.-|..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~------q~~~~eIAqfyCELAq 188 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG------QTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC------ccchhHHHHHHHHHHH
Confidence 8888999999999999998753 22345778899999999999999999999988762 121 345777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
.+....+.++|..++.+....+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888999999999998887433 5555666778889999999999999999988666556777888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHH
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT---KDVEEGLNLYRK 358 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~ 358 (570)
....+..+.+... ....-..+...-....-.+.|...+.+-+.. .|+...+..++...... |...+.+.++++
T Consensus 268 ~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 268 GLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 9999998887633 3333344444444444456666655554444 47888888887765432 334555566666
Q ss_pred HHh
Q 038914 359 MLS 361 (570)
Q Consensus 359 ~~~ 361 (570)
|+.
T Consensus 344 mvg 346 (389)
T COG2956 344 MVG 346 (389)
T ss_pred HHH
Confidence 654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.6e-13 Score=129.81 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=201.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHH
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNVVT-FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYN--TLIDGYCLTGKIDR 316 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 316 (570)
..|+++.|.+.+....+... ++.. |.....+....|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 36888888877766554321 2222 333344457788888888888888765 44433222 33567778888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhhcCCHHHHHH
Q 038914 317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV-------VTYHTLFLGLFEVHQVEHALK 389 (570)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 389 (570)
|...++.+.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887775 446777788888888888888888888888876544222 122333333334455566666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914 390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL 469 (570)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (570)
+++.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66665443 2457778888888999999999999999888774 4555332 2334445688999999998888752
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.|...+..+++.|...|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556788889999999999999999999988 578988888899999999999999999988763
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.1e-13 Score=131.83 Aligned_cols=291 Identities=11% Similarity=0.003 Sum_probs=189.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914 239 CYANDWNEAKHLFIEMMDQGVQPNV-VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRA 317 (570)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 317 (570)
...|+++.|.+.+.+..+.. |+. ..+.....++...|+++.|.+++.++.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35677888887777766542 332 333444566677788888888887776542222222333446677778888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHH---HHhhcCCHHHHHHHHHH
Q 038914 318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH-TLFL---GLFEVHQVEHALKLFDE 393 (570)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~ 393 (570)
...++.+.+.. |.+..+...+...+...|+++.|.+.+..+.+.+.. +...+. .... .....+..+.....+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877765 446667777778888888888888888888776543 222221 1111 11222222333334444
Q ss_pred HHhCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914 394 MRRNHV---AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVS--YNCLIDGLCKHGRLEIAWELFSSLPRVG 468 (570)
Q Consensus 394 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (570)
+.+... +.+...+..++..+...|+.++|.+.+++..+.. +.+... ...........++.+.+.+.++...+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 443321 2367788888888889999999999999888764 222211 1111122234577888888888877642
Q ss_pred CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 469 LMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 469 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
+.|. ....++++.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344 55678899999999999999999954443357888888889999999999999999998865
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.8e-13 Score=130.36 Aligned_cols=289 Identities=13% Similarity=0.115 Sum_probs=154.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914 163 CRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA 241 (570)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (570)
...|+++.|.+.+.+..+.. |+ ...+.....++...|+.+.|.+.+.+..+....+...........+...
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 45688888888887776643 33 3344555667777788888888888776542222223334456777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HhcCCHHHH
Q 038914 242 NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYN-TLIDGY---CLTGKIDRA 317 (570)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a 317 (570)
|+++.|...++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++
T Consensus 167 ~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888776432 5566777777888888888888888888777533 222221 111111 222222222
Q ss_pred HHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHH--HHhhcCCHHHHHHHH
Q 038914 318 RELFVSMESNGC---MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH-TLFL--GLFEVHQVEHALKLF 391 (570)
Q Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~a~~~~ 391 (570)
...+..+..... +.+...+..+...+...|+.++|.+++++..+.. |+..... .++. .....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 223333333211 1255566666666666777777777776666642 2222100 0111 112234444444444
Q ss_pred HHHHhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914 392 DEMRRNHVAANT--YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSL 464 (570)
Q Consensus 392 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (570)
+...+.. +.+. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444432 2233 3444445555555555555555553222222344444445555555555555555555543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.9e-12 Score=115.88 Aligned_cols=459 Identities=11% Similarity=0.019 Sum_probs=304.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT 157 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (570)
+..+.+-+..+.++..|.-+-++....+..|+..- .+..++.- .|+++.|..+...-.-. ..|..+...
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~-------~~~y~ra~~lit~~~le--~~d~~cryL 87 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYL-------GRQYERAAHLITTYKLE--KRDIACRYL 87 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHh-------hhHHHHHHHHHHHhhhh--hhhHHHHHH
Confidence 44444445556667777777777766654443322 22222222 24666666666544322 335566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC------C-CcccCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGE------I-GVVCKPD-----------TVTYTTIIDGLCKKGFVDKAKELFLKM 219 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~------~-~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 219 (570)
...++.+..++++|..++......... . +..+.+| ...+-.-...|....+.++|...|.+.
T Consensus 88 ~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A 167 (611)
T KOG1173|consen 88 AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA 167 (611)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence 677777777777777777622110000 0 0001111 111222234556667788888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhc-----------------CCHHH-HHHHHHHHHHC----------------CCCCChhh
Q 038914 220 KDENINPNAVTYTSLICGFCYA-----------------NDWNE-AKHLFIEMMDQ----------------GVQPNVVT 265 (570)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~-a~~~~~~~~~~----------------~~~~~~~~ 265 (570)
...++. ....+..++....-. +...+ -..+|+-.... +..-+...
T Consensus 168 l~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 168 LLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred Hhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 665222 222222222221111 11111 11122211000 11223344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK 345 (570)
Q Consensus 266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (570)
......-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |....+|-.+.-.|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 4455566778899999999999999874 5566666666778889999887777777777653 5578889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
.|...+|.+.|.+....+.. -...|.....+++-.+..++|...+....+. ++....-+..+..-|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 99999999999998775222 2457888899999999999999999887664 222333344455668889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV------GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
|.++.... |.|+.+.+-+.-.....+.+.+|...|+..+.. ....-..+++.|+.+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99998765 678888888888888899999999999987631 00113456899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038914 500 EAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKN 556 (570)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 556 (570)
+.. .+.+..++.++.-.|...|+++.|+..|.+.+ .+.|+..+...++..+...
T Consensus 482 L~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 482 LLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 986 35588899999999999999999999999998 5689887777666654443
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.1e-16 Score=142.93 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=87.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914 268 VIMDELCKNGKMDGASRLLELMILRG-VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT 346 (570)
Q Consensus 268 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (570)
.+...+...|++++|+++++...... .+.+...+..+...+...++++.|...++++...+. .+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34566666777777777775544332 123444455555566666777777777777666542 244455555555 566
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 347 KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
+++++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665543 2344555566666667777777777776655422 234556666666777777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE 505 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (570)
++++.+.. |.|......++..+...|+.+++..++....+.. +.|...+..++.++...|+.++|+.+|++..+. .+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 77777664 4456666677777777777777777666665542 345556666777777777777777777776663 13
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 506 PNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
.|+.....+..++...|+.++|..+..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 355666667777777777777777766654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4.2e-13 Score=127.04 Aligned_cols=251 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038914 163 CRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY--TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY 240 (570)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (570)
.+.|+++.|...++++.+.. |+.... ......+...|++++|.+.++++.+.+ +-+...+..+...|..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 44555555555555555432 332211 122445555555555555555555543 2244455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914 241 ANDWNEAKHLFIEMMDQGVQPNV-------VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (570)
.|+|++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 55555555555555554322111 12222222222333334444444443222 12344455555555555566
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 038914 314 IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDE 393 (570)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (570)
.++|..++++..+. +++.... ++.+....++.+++++..+...+.. +-|......+...+...+++++|.+.|+.
T Consensus 279 ~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666555555543 2232111 1222233355555555555555542 12334455555555556666666666655
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 394 MRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
+.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 354 al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 354 ALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5543 3555555555555566666666666555543
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.9e-16 Score=142.03 Aligned_cols=262 Identities=18% Similarity=0.172 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN 276 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (570)
.+...+.+.|++++|++++++..... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55677777788888888886544432 2335555566666667777788888888777765433 45556566655 577
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914 277 GKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNG-CMHDVVSYSILINGYCKTKDVEEGLNL 355 (570)
Q Consensus 277 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (570)
+++++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777766554 2345556666777777777777777777765432 234566677777777777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914 356 YRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE 435 (570)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (570)
+++.++..+. +......++..+...|+.+++..+++...+.. +.+...+..+..++...|+.++|..++++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777775221 45556666777777777777777766665543 4455566667777777777777777777776654 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 436 LNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
.|+.....++.++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5666777777777777777777777666543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=5.9e-14 Score=130.25 Aligned_cols=285 Identities=13% Similarity=0.040 Sum_probs=164.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCcchhhC
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
+..+|+..|.......+ ........++.+|...+++++|..+|+.+.+..+. -+..+|..++.-+
T Consensus 334 ~~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL----------- 400 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL----------- 400 (638)
T ss_pred HHHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-----------
Confidence 45667777766444333 33344456666777777777777777777665211 1334444444332
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
+-+-++..+.+-+-.-.+..+.+|-.++.+|.-+++.+.|+..|+++.+.+ +....+|+.+..-+.....+|.
T Consensus 401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHh
Confidence 112233333332222123345667777777777777777777777776654 2246666666666666666777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 212 AKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL 291 (570)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 291 (570)
|...|+..+..+.. +..+|..+.-.|.+.++++.|+-.|+++.+.++. +......++..+.+.|+.++|+++++++..
T Consensus 474 a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 474 AMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 77777666554211 3334445556666677777777666666665332 445555566666666667777777766665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 292 RGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK 362 (570)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (570)
.+. .|+..-...+..+...+++++|+..++++.+.- +.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 552 ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 552 LDP-KNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred cCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 532 233333344555556666666666666666552 334555666666666666666666666665554
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-11 Score=106.28 Aligned_cols=454 Identities=12% Similarity=0.160 Sum_probs=230.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (570)
.++..|+.+++-....+. ......-..++.++.+.|++++|+..|..+.... .++......+..++..+ |.
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL-------g~ 106 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL-------GQ 106 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH-------HH
Confidence 367777777776654443 1222334456667777777777777777776643 33333333322222222 46
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 133 IMEAAALFTKLRVFGCEPDVFTYN-TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
+.+|..+-++.. +....+ .++....+.++-++-...-+.+.. ....-.+|.......-.+.+
T Consensus 107 Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 107 YIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHH
Confidence 666666555432 222322 333334445554444443333321 12333334444434444566
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--C-----------
Q 038914 212 AKELFLKMKDENINPNAVTYTS-LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN--G----------- 277 (570)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g----------- 277 (570)
|++++.++... .|+....+. +.-+|.+..-++-+.++++-..+. ++-+..+.+..+....+. |
T Consensus 170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 66666666553 223333332 223444555555555555555443 111222222222111111 1
Q ss_pred ----------------------ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914 278 ----------------------KMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS 335 (570)
Q Consensus 278 ----------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (570)
.-+.|++++--+.+. -| .....++-.|.+.+++.+|..+.+++.-. ++.-
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~E 318 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYE 318 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHH
Confidence 123334433333322 11 22233445567788888888777665422 2322
Q ss_pred HHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914 336 YSILINGYCKTK-------DVEEGLNLYRKMLSKGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT 407 (570)
Q Consensus 336 ~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (570)
|-.-.-.+...| ...-|.+.|+..-+.+..-|. ..-..+...+.-..++++++..+..+...-. .|.....
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~ 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNL 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccchhhh
Confidence 222222233333 344555555544444332222 2234455555666778888888777766533 3333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-HHHHHHHHHhc
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT-YNIMIHGLCND 486 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 486 (570)
.+.++++..|++.+|+++|-++....++.+..-...|.++|.+.+.++.|+.++-++.. +.+..+ ...+..-|.+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 56778888888888888887776544433344445667788888888888877665543 223333 33445567778
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCc
Q 038914 487 GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP-DASTLSIVVDLLVKNEI 558 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 558 (570)
+.+=-|.+.|..+.. ..|++..|. |+-.....++..+....-.| ....++.++..+...+.
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 888778888877776 457766664 22222334444444322222 23455555555555444
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=1.7e-12 Score=113.32 Aligned_cols=287 Identities=13% Similarity=0.103 Sum_probs=194.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARE 319 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 319 (570)
..|+|..|++...+-.+.+..| ...|..-+++.-..|+.+.+-.++.++-+....++....-+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3577777777777766655443 344555566666777777777777777665334445555566666777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhhcCCHHHHHHHHH
Q 038914 320 LFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV-------VTYHTLFLGLFEVHQVEHALKLFD 392 (570)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 392 (570)
-++++...+ +.++.......++|.+.|++.....++.++.+.+.-.+. .++..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777665 346666777777777777777777777777776654443 344555555555555555555666
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914 393 EMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD 472 (570)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (570)
..... ...++.....++.-+.++|+.++|.++..+..+.+..+. . ...-.+.+-++.+.-++..++-.+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 65443 244566667777778888888888888888877765544 1 1222455667777777766666554 2345
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+..+.+|+..|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|....++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 57778888888888888888888887777 578888888888888888888888888877663
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.5e-12 Score=110.22 Aligned_cols=288 Identities=16% Similarity=0.172 Sum_probs=183.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHH
Q 038914 241 ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKIDRA 317 (570)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 317 (570)
..+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.++.--+. ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 445566666666666532 22334444566666666666666666666655311110 12334455666677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhcCCHHHHHHHHHH
Q 038914 318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV----VTYHTLFLGLFEVHQVEHALKLFDE 393 (570)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (570)
+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777776643 223455667777788888888888887777776544332 3455566666667788888888887
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh
Q 038914 394 MRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV 473 (570)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (570)
..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+. .+..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 77654 33445555667777888888888888888887754444566778888888888888888888888774 3444
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR---NNETSKVIELLHRMD 535 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 535 (570)
..-..+...-....-.+.|..++.+-+.. +|+...+..++..... .|...+-+..+++|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 44445555444444455666655554442 6888888888776553 344666777777776
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.7e-14 Score=129.50 Aligned_cols=282 Identities=15% Similarity=0.095 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV--QPNVVTFTVIMDELCKNGKMDGASRLL 286 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 286 (570)
..+|...|+.+... +.-+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+-.+- +.-+--.+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHH
Confidence 34555555553332 222234444455555555555555555555544311 112333433332221 111111122
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914 287 ELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP 366 (570)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 366 (570)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|+|...|+..+.....
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 2234455555555555555555555555555442 113444555555555555555555555554432111
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914 367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID 446 (570)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 446 (570)
+-.+|..+...|.+.++++.|+-.|+.+.+-+ +.+......+...+.+.|+.++|+.+++++...+ +.|+..--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHH
Confidence 12233334444555555555555555554433 2333444444444555555555555555554443 223322223333
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.+...+++++|+..++++.+. .| +...|..++..|.+.|+.+.|+.-|--+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 444455555555555555442 22 224444555555555555555555544444
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.65 E-value=1.4e-10 Score=107.43 Aligned_cols=162 Identities=12% Similarity=0.133 Sum_probs=113.2
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL 121 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (570)
+...+..+.++|+...-+..|+.++..-|...+...|...+......|-++-++.+|++.++. .|.. ....+..+.
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHH
Confidence 334445567899999999999999998887788889999999999999999999999999987 4433 444555554
Q ss_pred hcCCcchhhCCHHHHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCcccCCC
Q 038914 122 QNGSSLCVESRIMEAAALFTKLRVFG------CEPDVFTYNTLINGLCRTGHT---IVALNLFEEMANGNGEIGVVCKPD 192 (570)
Q Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~ 192 (570)
.. ++.++|.+.+..++... -+.+-..|..+-....+.-+. -....+++.+..+. +|
T Consensus 181 ~~-------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--------tD 245 (835)
T KOG2047|consen 181 KS-------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--------TD 245 (835)
T ss_pred hc-------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--------cH
Confidence 44 59999999998877431 122334555555555544332 22334455544432 33
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 193 --TVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 193 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
...|.+|.+.|.+.|.+++|.++|++....
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 446788888888888888888888876653
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.6e-12 Score=114.44 Aligned_cols=430 Identities=13% Similarity=0.078 Sum_probs=283.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHH----HhCC---------CCCCHhh----HHHHHHHHHhcCCcchhhCCHHH
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRL----NSTG---------LFPDLYA----YNILINCFLQNGSSLCVESRIME 135 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---------~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~ 135 (570)
.+..+.+..+.++.+..+|++|..++... .... +.++... ...-...|.-.|+.|....++++
T Consensus 80 ~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 80 RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence 66777888889999999999999988832 1110 0111111 11222334444567777778888
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914 136 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKEL 215 (570)
Q Consensus 136 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 215 (570)
|...|.+.+..... ....+..++.... -.+.+.++.+...+-. .....+......+.....-...-+.....
T Consensus 160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a--~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 160 ARDKYKEALLADAK-CFEAFEKLVSAHM-----LTAQEEFELLESLDLA--MLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHhcchh-hHHHHHHHHHHHh-----cchhHHHHHHhcccHH--hhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 88888877654211 1222333332221 1222223333221100 00111222222222221111100111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 216 FLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK 295 (570)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 295 (570)
-.+..-.+..-+......-.+-+...+++.+...+.+.+.+. .++....+..-+.++...|+..+-..+=.++++. .+
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 110111123346666677777888889999999999998886 4556667777777888899988888888888876 34
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914 296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF 375 (570)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (570)
....+|..+.-.|...|+..+|.+.|.+....+ +.-...|-.+...|.-.+..+.|+..+..+.+. ++.....+.-+.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 466788888888888899999999999887664 223457888889999999999999998887764 222333344556
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCChhhHHHHHHHHH
Q 038914 376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL----K--YELNIVSYNCLIDGLC 449 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~ 449 (570)
.-|...++.+.|.+.|.+..... |.|+.+++.+.-.....+.+.+|..+|+..... . ......+++.|+.+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 66888899999999998887653 667778888877777888999999999876521 1 0123456888999999
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
+.+.+++|+..+++.+... +.+..++.+++-+|...|+++.|.+.|.+.+. +.|+..+...++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999988763 56788999999999999999999999999887 678876666555433
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.2e-12 Score=110.98 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=237.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914 205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR 284 (570)
Q Consensus 205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 284 (570)
-.|++.+|+++..+-.+.+.. ....|..-+.+.-..|+.+.+-+++.++.+....++........+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 369999999999998877544 4456666678888999999999999999887556667777888889999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV-------VSYSILINGYCKTKDVEEGLNLYR 357 (570)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 357 (570)
-+.++.+.+ +-+..+.....++|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999875 446778889999999999999999999999998866554 356666766666666666666776
Q ss_pred HHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038914 358 KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN 437 (570)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 437 (570)
..... .+.++.....++.-+...|+.++|.++.++..+.+..+. +..++ .+.+-++.+.-++..+...+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 66554 444677778888899999999999999999998876655 22222 3556788888888888776654 567
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (570)
+..+..|...|.+.+.|.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++.+..-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999998888 479999999999999999999999999998775433443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=3.5e-10 Score=104.88 Aligned_cols=459 Identities=10% Similarity=0.066 Sum_probs=285.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914 74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV 152 (570)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (570)
-+..|...+..+..+|+....+..|++++..- +......|...+......+ -.+-++.+|++.++. ++
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-------lPets~rvyrRYLk~----~P 169 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-------LPETSIRVYRRYLKV----AP 169 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-------ChHHHHHHHHHHHhc----CH
Confidence 34678888999999999999999999998762 2224456777777666654 778999999999875 44
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHH
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV---DKAKELFLKMKDENINPNAV 229 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~ 229 (570)
..-...|..+++.++.++|.+.+...+..+...+...+.+...|..+.+...+.-+. -....+++.+...-..--..
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~ 249 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGF 249 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHH
Confidence 457788899999999999999999998766444443466677788877777765432 33445555555441111245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------------hhHHHHHHH
Q 038914 230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK----------------------MDGASRLLE 287 (570)
Q Consensus 230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~ 287 (570)
.|++|.+.|.+.|.+++|.++|++.+.. ..+..-|..+..+|+.-.. ++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 7899999999999999999999998875 2244445555555543221 111222233
Q ss_pred HHHHCCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCCHH
Q 038914 288 LMILRGV-----------KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMH------DVVSYSILINGYCKTKDVE 350 (570)
Q Consensus 288 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 350 (570)
.+..... +.+...|..- .-...|+..+-...+.++...- .| -...|..+...|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 3332210 0111111111 1122355555666666655431 11 2235777788888888888
Q ss_pred HHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc-----------------CHHHHHHHH
Q 038914 351 EGLNLYRKMLSKGIRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAA-----------------NTYIYTTFI 410 (570)
Q Consensus 351 ~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~ 410 (570)
.|..+|++..+-..+-- ..+|......-.+..+++.|+++++.....--.| +..+|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 88888888877533211 2344444455556777888888777765421110 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHh---c
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCN---D 486 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~ 486 (570)
......|-++....++++++...+ .++.+.......+....-++++.++|++-+..--.|+. ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 555667778888888888887664 33333333344455566778888888877665334554 567776665553 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 038914 487 GQMDKAHGLFLDMEAKGLEPNFV-IF-NTLMLGFIRNNETSKVIELLHRMDMRNVMPD--ASTLSIVVD 551 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~-~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~ 551 (570)
..++.|..+|+++++ |.+|... +. ......--+.|....|+.++++... ++++. ...|+..++
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 367888888888888 4565433 22 2222223346777888888888764 23443 234554444
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.8e-11 Score=103.86 Aligned_cols=427 Identities=12% Similarity=0.071 Sum_probs=260.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038914 82 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING 161 (570)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (570)
+.-+....++..|+.+++.....+..-. .....-|..|. ...|++++|+..|..+.... .++...+-.|..+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~------fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc 100 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCY------FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACC 100 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHH------HhhccHHHHHHHHHHHhccC-CCCcccchhHHHH
Confidence 3455677899999999998876543222 22333333332 22469999999999888753 5677777778777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914 162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA 241 (570)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (570)
+.-.|.+.+|.++..+..+ +.-.-..+....-+.++-++-..+.+.+.+. ..--.+|.......
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k-----------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPK-----------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR 164 (557)
T ss_pred HHHHHHHHHHHHHHhhCCC-----------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH
Confidence 7788999999998877533 3444455566666778877777777766653 23344566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914 242 NDWNEAKHLFIEMMDQGVQPNVVTFTV-IMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRAREL 320 (570)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 320 (570)
-.+.+|+++|..+...+ |.-...+. +.-+|.+..-++-+.++++-.++. ++.+....+..+....+.=.-..|..-
T Consensus 165 ~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 78999999999998753 34444443 344677888888899998888776 232333333333222221111111111
Q ss_pred HHHH--------------HhCCC------------CC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914 321 FVSM--------------ESNGC------------MH-----DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369 (570)
Q Consensus 321 ~~~~--------------~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (570)
...+ .+.+. -| -+...-.++-.|.+.+++++|..+.+++... ++.
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~ 317 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPY 317 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC----ChH
Confidence 1111 11110 00 1122334455678889999998887765431 222
Q ss_pred hHHHHHHHHhhcC-------CHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914 370 TYHTLFLGLFEVH-------QVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY 441 (570)
Q Consensus 370 ~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (570)
-|..-...++..| ...-|.+.|.-.-.++..-|.. --..+..++.-..++++++.+++.+..--...|.. .
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n 396 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-N 396 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-h
Confidence 2222222222222 3445555555544433322221 12334444555567888888888877654333333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF-NTLMLGFI 519 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~ 519 (570)
..+.++++..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-++.. +.+..+. ..+...|.
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 45788999999999999999888765444 44444 5677899999999999887655432 2233343 34456788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 520 RNNETSKVIELLHRMDMRNVMPDASTL 546 (570)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~p~~~~~ 546 (570)
+.+.+=-|-+.|+.+... .|+.+.|
T Consensus 473 k~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 999998888888888754 4555544
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=4.9e-11 Score=110.67 Aligned_cols=456 Identities=13% Similarity=0.071 Sum_probs=218.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
.++|...++..+.+++..| .++++....+-.+...|+-++|.......++. .+.+...-.++..+.+. ..
T Consensus 20 ~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~------dK 89 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRS------DK 89 (700)
T ss_pred HHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhh------hh
Confidence 3456666666666666655 45555555555666667777777776666664 23333333333333332 35
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
++++|++.|..++..+ +.|..++.-+...-.+.|+++.....-....+.. +.....|..++.++.-.|+...
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766654 3355566666655666666666666666655543 3334556666666666677777
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914 212 AKELFLKMKDEN-INPNAVTYTSL------ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR 284 (570)
Q Consensus 212 a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 284 (570)
|..+++...+.. ..|+...+... .......|..++|.+.+...... +.-....-..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777666665543 13444433322 13344556666666655544332 11111222233445666677777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 285 LLELMILRGVKPDTSTYNTLI-DGYCLTGKIDRAR-ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK 362 (570)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (570)
++..++.. .||...|...+ .++....+.-++. .+|....+. .+........-+.......-.+..-+++..+.+.
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 77777665 34444333333 3332222222333 444443332 1111111111111111112223334455555555
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH----hCC----------CCcCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 038914 363 GIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR----RNH----------VAANTY--IYTTFIDGLCKNGYIVKAVELF 426 (570)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 426 (570)
|+++-... +...|-.....+-..++.-.+. ..+ -+|... ++..++..+-..|+++.|..++
T Consensus 318 g~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 54432221 1111111111111111111110 000 023332 2334455566667777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914 427 RTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506 (570)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (570)
+.++.+. |.-+..|..-.+.+...|++++|...+++..+.. .+|...-.--+.-..+..+.++|.++.....+.|..-
T Consensus 395 d~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 395 DLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 7666542 2223344455566666677777777777666542 2232222233334445666666666666665544200
Q ss_pred --C----HHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 038914 507 --N----FVIFNTL--MLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 507 --~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 534 (570)
+ .-.|..+ ..+|.+.|++..|++-+..+
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 0 1122222 24555666665555444433
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=3.3e-10 Score=105.30 Aligned_cols=431 Identities=15% Similarity=0.088 Sum_probs=278.9
Q ss_pred HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 038914 41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINC 119 (570)
Q Consensus 41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 119 (570)
.....|..+...|+-++|....+..++.++ .+..+|+.++-.+....++++|++.|..++.. .||. ..+..+--.
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslL 118 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLL 118 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 344566777789999999999999999888 88899999999999999999999999999988 4544 334333222
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH-
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT- 198 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (570)
.+. .++++-....-.++.+.. +.....|..+..++.-.|++..|..+++...+... -.|+...+..
T Consensus 119 Q~Q-------mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~e~s 185 (700)
T KOG1156|consen 119 QIQ-------MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDYEHS 185 (700)
T ss_pred HHH-------HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHHHHH
Confidence 222 347777777777777652 22445688888888889999999999999987652 1345444432
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038914 199 -----IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL 273 (570)
Q Consensus 199 -----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (570)
-.....+.|..++|.+.+...... +......-..-...+.+.+++++|..++..++.. .||...|+..+..+
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 234566778888888888765543 2223333345567788999999999999999986 46666666554444
Q ss_pred H-hcCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914 274 C-KNGKMDGAS-RLLELMILRGVKPDTSTYNTLIDGYCLTGK-IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE 350 (570)
Q Consensus 274 ~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (570)
. +-.+.-++. .+|....+. .|.......+--......+ .+..-.++....+.|+++ ++..+...|-.-...+
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~ 337 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA 337 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH
Confidence 3 333333444 566655443 2222211111111111122 334455666777777553 3444444443322222
Q ss_pred HHHHHHHHHH----hCCC----------CCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914 351 EGLNLYRKML----SKGI----------RPTV--VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC 414 (570)
Q Consensus 351 ~A~~~~~~~~----~~~~----------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (570)
-..++...+. ..|. +|.. .++..+++.+-..|+++.|..+++....+. +.-...|..-.+.+.
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~k 416 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHH
Confidence 1111111111 1111 3333 344556777888999999999999988763 333456666678888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChh--------hHHH--HHHHHH
Q 038914 415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVV--------TYNI--MIHGLC 484 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~--l~~~~~ 484 (570)
..|+++.|..++++..+.+ .+|...-..-+.-..++.+.++|.++.....+.|. +.. +|-. =+.+|.
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~ 493 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYL 493 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHH
Confidence 8999999999999999877 56666555666667788999999999998888764 221 2222 234577
Q ss_pred hcCChhHHHHHHHHHH
Q 038914 485 NDGQMDKAHGLFLDME 500 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~ 500 (570)
+.|++..|++=|..+.
T Consensus 494 r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 494 RQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 7778877776555443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-09 Score=102.25 Aligned_cols=458 Identities=13% Similarity=0.009 Sum_probs=257.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHH-------------------HHHHH----H
Q 038914 86 AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEA-------------------AALFT----K 142 (570)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A-------------------~~~~~----~ 142 (570)
...+..++++.-+......+...+..++..+...+ ..+...++.+++ .-..- +
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~----~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k 313 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGF----ALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRK 313 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcc----cccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 34567778888888887776666666655544433 234444455544 22111 1
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 143 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+....+..+..+|..+.-++...|+++.+.+.|++....- ......|..+...|...|.-..|..+++.-...
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 1112234466778888888888999999999999987642 345678899999999999999999999877655
Q ss_pred CCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhcC-----------ChhHHHHH
Q 038914 223 NINP-NAVTYTSLICGFC-YANDWNEAKHLFIEMMDQ--GV--QPNVVTFTVIMDELCKNG-----------KMDGASRL 285 (570)
Q Consensus 223 ~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~ 285 (570)
...| +...+......|. +.+..++++++-.+++.. +. ......|..+.-+|...- ...++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 3223 3444444444443 456777887777777662 11 112344555544443221 23467778
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914 286 LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR 365 (570)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 365 (570)
+++..+.+. .|..+...+.--|+..++++.|.+...+..+.+...+...|..+.-++...+++.+|+.+.+.....- .
T Consensus 467 le~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~ 544 (799)
T KOG4162|consen 467 LEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G 544 (799)
T ss_pred HHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h
Confidence 888877642 24444444555677888999999999999888667788889999989999999999999988877641 1
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC---------------------C-------CCcCHHHHHHHHHHHHhcC
Q 038914 366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN---------------------H-------VAANTYIYTTFIDGLCKNG 417 (570)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~ 417 (570)
.|......-+..-...++.+++......+... + ......++..+.......+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 01111111111111133333333222221100 0 0000111111111000000
Q ss_pred ---CHHHHHHHHHHHHHcCCC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 418 ---YIVKAVELFRTLRILKYE--LN------IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 418 ---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
..+.. +...... |+ ...|......+.+.++.++|...+.++... .+-....|...+..+...
T Consensus 625 ~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 625 KSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred hhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHH
Confidence 00000 0110111 11 123444455556666666666666665553 122344555555666666
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHccCcccccc
Q 038914 487 GQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIE--LLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSI 563 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 563 (570)
|.+.+|.+.|..... +.|+ ..+...+..++.+.|+..-|.. ++..+.+.+ +.+.+.|..++..+.+.|+.+.|.
T Consensus 698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 666666666666655 3343 4455666666666666555555 666666554 345666666666666666666665
Q ss_pred hhh
Q 038914 564 PQF 566 (570)
Q Consensus 564 ~~~ 566 (570)
+.|
T Consensus 775 ecf 777 (799)
T KOG4162|consen 775 ECF 777 (799)
T ss_pred HHH
Confidence 554
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=2.9e-12 Score=126.83 Aligned_cols=257 Identities=14% Similarity=0.051 Sum_probs=169.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCC--cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038914 89 KHYDTVLSLFKRLNSTGLFPDLYAYNILIN-CFLQNGS--SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 165 (570)
Q Consensus 89 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (570)
+.+++|+++|+++++. .|+.......+. ++...+. .....+++++|...++++++.+ +.+..++..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4578888888888877 555443332222 2221111 1224567889999999888874 33567777788888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038914 166 GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWN 245 (570)
Q Consensus 166 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (570)
|++++|+..|+++.+.+ +.+...+..+..++...|++++|+..+++..+.+.. +...+..++..+...|+++
T Consensus 352 g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGID 423 (553)
T ss_pred cCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHH
Confidence 99999999999988865 445677888888899999999999999998886432 3333344455566788899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD-TSTYNTLIDGYCLTGKIDRARELFVSM 324 (570)
Q Consensus 246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (570)
+|+..++++.....+-+...+..+..++...|++++|...+.++... .|+ ....+.+...+...| +.|...++.+
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 99999888876532224455677778888899999999998887654 333 334455555666666 4677766665
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 325 ESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK 362 (570)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (570)
.+.... .......+-..+.-.|+-+.+..+ +++.+.
T Consensus 500 l~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 500 LESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 543111 111111244445556676666655 777665
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-09 Score=99.44 Aligned_cols=447 Identities=12% Similarity=0.085 Sum_probs=265.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcch
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLC 128 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 128 (570)
.+.|++++|++..++++...| .+..++..-+.++.+.++|++|+.+.+.-... ..+. ..|.-....|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y-------- 90 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY-------- 90 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH--------
Confidence 367899999999999999988 78889999999999999999999666544321 1111 1123322222
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh--hHHHHHHHHHhc
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV--TYTTIIDGLCKK 206 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 206 (570)
+.+..++|+..++-+. +.+..+...-...+.+.|++++|+.+|+.+.+.+ .++.. .-..++.+-.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-------~dd~d~~~r~nl~a~~a-- 157 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-------SDDQDEERRANLLAVAA-- 157 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHH--
Confidence 3569999999998332 2244467777788899999999999999998875 22222 1122221111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CC------CCh-hhHHHHHHH
Q 038914 207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-------VQ------PNV-VTFTVIMDE 272 (570)
Q Consensus 207 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~------~~~-~~~~~l~~~ 272 (570)
.-.+ ++.+..... ...+...+......+...|+|.+|+++++...+.+ .. -.. ..-..+.-+
T Consensus 158 --~l~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 --ALQV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred --hhhH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0111 122222211 11123333444567778999999999999883321 11 001 112345556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHhCCC----------CCCHhhH-
Q 038914 273 LCKNGKMDGASRLLELMILRGVKPDTSTYNTLID---GYCLTGKI-D-RARELFVSMESNGC----------MHDVVSY- 336 (570)
Q Consensus 273 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~- 336 (570)
+...|+..+|..++...++.+ .+|........+ +.....++ + .++..++....... .-.....
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999875 334422222211 11111111 1 12222222111000 0011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914 337 SILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF--EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC 414 (570)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (570)
+.++..|. +..+.+.++...... ..|.. .+..++..+. +...+..+..++....+........+....++...
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 22222222 233333333322221 22332 2333333332 23357788888888877654444667777888889
Q ss_pred hcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--CCCCh----hhHHHHH
Q 038914 415 KNGYIVKAVELFR--------TLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG--LMADV----VTYNIMI 480 (570)
Q Consensus 415 ~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~l~ 480 (570)
..|+++.|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+.++.- -.+.. .++..++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 9999999999999 5554443 34455566777888888888888888776521 01122 2333344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
..-.+.|+-++|..+++++.+. .++|..+...++.+|++. +.+.|..+-+++.
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 4445679999999999999986 366888888888888876 6788887776664
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.1e-12 Score=111.11 Aligned_cols=235 Identities=14% Similarity=0.071 Sum_probs=192.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF 379 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (570)
--+.+.++|.+.|-+.+|.+.++..+.. .+-+.+|..+-.+|.+..+...|+.++.+-++. ++-+......+...+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 3456788999999999999999988876 466778888999999999999999999888875 3334444455667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914 380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459 (570)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (570)
..++.+++.++++...+.+ +.+......+...|.-.++++-|+.+++++...| ..++..|+.+.-+|...++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 8899999999999998875 5566677777777888899999999999999998 5688899999999999999999999
Q ss_pred HHHhhhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 460 LFSSLPRVGLMAD--VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 460 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
.|++....--.|+ ..+|-.+....+..|++..|.+.|+-.+..+ ..+...++.|...-.+.|+.++|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s- 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS- 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence 9998876543344 3678889999999999999999999888753 33678899998888999999999999999874
Q ss_pred CCCCC
Q 038914 538 NVMPD 542 (570)
Q Consensus 538 ~~~p~ 542 (570)
+.|+
T Consensus 458 -~~P~ 461 (478)
T KOG1129|consen 458 -VMPD 461 (478)
T ss_pred -hCcc
Confidence 3455
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-09 Score=96.10 Aligned_cols=293 Identities=13% Similarity=0.024 Sum_probs=184.1
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914 259 VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI 338 (570)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (570)
.+-|......+...+...|+..+|+..|++....+ +.+..........+...|+.++...+...+.... ......|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 44566667777777777788788877777776542 1122233333444556677777777766665542 123444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 038914 339 LINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY 418 (570)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 418 (570)
-+.......+++.|+.+-.+.+..+.. +...+..-...+...+++++|.-.|+...... +-+...|..++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 555556667777777777777765322 44455555566677778888777777766542 3456777788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 038914 419 IVKAVELFRTLRILKYELNIVSYNCLI-DGLCK-HGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGL 495 (570)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 495 (570)
+.+|..+-+...+.- +.+..+...+. ..+.. ...-++|.++++...+ +.|+- ...+.+...|...|..++++.+
T Consensus 384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 877777766655432 45555555542 23322 2334677777777766 35554 4556667777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccccc
Q 038914 496 FLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNS 562 (570)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 562 (570)
+++.+. ..||....+.|...+...+.+++|+..|...+.. .|...--..=++.+.+..+..+|
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHhccCCCCc
Confidence 888777 4677777788888888888888888888887754 35443333333344444443343
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.1e-09 Score=104.74 Aligned_cols=293 Identities=11% Similarity=0.037 Sum_probs=194.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
..|++++|+..++.....-. +........+..+.+.|++++|..+|..+++. .|+...|...+..+..... -...
T Consensus 16 e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~-~~~~ 90 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL-QLSD 90 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc-cccc
Confidence 35799999999988766554 55566778889999999999999999999998 6777777777666652211 0112
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
...+....+|+++... -|...+...+.-.+..-.++. .+...+..+...| + +.+|..|-..|....+.
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcChhHH
Confidence 3577888888888766 344444444433333322333 3455566666655 2 34566666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038914 210 DKAKELFLKMKDE----N----------INPNA--VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL 273 (570)
Q Consensus 210 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (570)
+-..+++..+... + -+|.. .++.-+...|-..|++++|+.++++.+...+. .+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 5555666555432 0 12333 34455677788888888888888888876322 356777788888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------hhHHHHHHHHHh
Q 038914 274 CKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV--------VSYSILINGYCK 345 (570)
Q Consensus 274 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~ 345 (570)
-+.|++.+|.+.++.....+ .-|...-+..+..+.+.|++++|.+++......+..+.. +.......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888764 235566666777788888888888888877665532211 112334667788
Q ss_pred cCCHHHHHHHHHHHHh
Q 038914 346 TKDVEEGLNLYRKMLS 361 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~ 361 (570)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888777776665
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.5e-09 Score=97.62 Aligned_cols=401 Identities=12% Similarity=0.031 Sum_probs=225.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
..|++++|.+...+++..+ +.+..++..-+.++.+.++|++|+.+.+.-.... .+...+.--+.+..+.+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--------~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--------VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--------hcchhhHHHHHHHHHccc
Confidence 5689999999999999876 5567788888889999999999996665533211 111111233455668899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCChhHHHHHHH
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE-LCKNGKMDGASRLLE 287 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 287 (570)
.++|+..++-... .+..+...-...+.+.|++++|.++|+.+.+.+.+ + +...+++ +...+---.+. +
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~-- 163 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-L-- 163 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-H--
Confidence 9999999983322 24446666678889999999999999999775332 1 1111111 00000001111 1
Q ss_pred HHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------H-hhHHHHHHHHHhcCCHHH
Q 038914 288 LMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNG-------CMHD------V-VSYSILINGYCKTKDVEE 351 (570)
Q Consensus 288 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~~~~~~~ 351 (570)
+......|+ ...+......+...|++.+|+++++.....+ -..+ . .+--.+..++-..|+.++
T Consensus 164 -~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 -LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred -HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 111111221 1122222334455666777766666652110 0000 0 011223344555666677
Q ss_pred HHHHHHHHHhCCCCCChhhH----HHHHHH---------------------------------------------HhhcC
Q 038914 352 GLNLYRKMLSKGIRPTVVTY----HTLFLG---------------------------------------------LFEVH 382 (570)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~----~~l~~~---------------------------------------------~~~~~ 382 (570)
|..++...+..... |.... +.++.. ....+
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77766666654321 22111 111100 00111
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914 383 QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK--NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWEL 460 (570)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (570)
..+.+.++..... +..| ...+..++..+.+ ......+..++....+....-...+....+...+..|+++.|.++
T Consensus 322 k~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1112211111110 1112 2233333333222 224666777777665543222345566677778899999999999
Q ss_pred HH--------hhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHH
Q 038914 461 FS--------SLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK--GLEPN----FVIFNTLMLGFIRNNETSK 526 (570)
Q Consensus 461 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~ 526 (570)
+. .+.+.+..| .+...+...+.+.++.+.|..++.+++.. .-.+. ..++..++..-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 555543333 44556667777777777777777776542 01112 2233444455567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914 527 VIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 527 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 557 (570)
|..+++++.+.+ ++|..+...++.+|++..
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 999999999864 688999999999988754
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.9e-09 Score=93.74 Aligned_cols=424 Identities=15% Similarity=0.113 Sum_probs=272.7
Q ss_pred CCCChhHHHHHHHHHHhc------------------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 038914 51 TTITPNDALCVFDYMLNM------------------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA 112 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 112 (570)
+..++..|.+.|+.+++. .|.+.+...-...+.+|...++-+.|+....+..+....| .
T Consensus 55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p---~ 131 (564)
T KOG1174|consen 55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP---R 131 (564)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccch---h
Confidence 344566677777666542 1223344455678888889999999998887766543222 2
Q ss_pred HHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccC
Q 038914 113 YNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEIGVVCK 190 (570)
Q Consensus 113 ~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~ 190 (570)
.+.++.-+...| ++..++.-.+...+..- + .... .|.++.+.+ -++.+--. |.... .+
T Consensus 132 inlMla~l~~~g------~r~~~~vl~ykevvrec-p---~aL~-~i~~ll~l~v~g~e~~S~~---m~~~~------~~ 191 (564)
T KOG1174|consen 132 INLMLARLQHHG------SRHKEAVLAYKEVIREC-P---MALQ-VIEALLELGVNGNEINSLV---MHAAT------VP 191 (564)
T ss_pred HHHHHHHHHhcc------ccccHHHHhhhHHHHhc-c---hHHH-HHHHHHHHhhcchhhhhhh---hhhee------cC
Confidence 233344344433 33334444444444321 1 1111 122222211 12222111 11111 33
Q ss_pred CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 038914 191 PDTVTYTTIIDGLCK--KGFVDKAKELFLKMKDE-NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFT 267 (570)
Q Consensus 191 ~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 267 (570)
|+.......+.+++. .++-..|.+.+-.+... -++-|+.....+..++...|+..+|+..|+.....++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 443333334444433 34434444443333222 25668888899999999999999999999998775321 233333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914 268 VIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTK 347 (570)
Q Consensus 268 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (570)
.....+...|+++....+...+.... ..+...|..-+......+++..|+.+-++.++.+ +.+...+-.-...+...+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 34445567889998888888877652 2233344444455567788999999999888764 335556666677888999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-HHHH-hcCCHHHHHHH
Q 038914 348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI-DGLC-KNGYIVKAVEL 425 (570)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~ 425 (570)
+.+.|.-.|+..+... +-+..+|..++.+|...|++.+|..+-....+. ++.+..++..+. ..+. ...--++|..+
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999999999888752 236789999999999999999998877666553 345566665553 2332 23345789999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE 505 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (570)
++...... |.-....+.+...+...|..+.+..+++.... ..||....+.|+..+...+.+++|++.|..++.. .
T Consensus 427 ~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--d 501 (564)
T KOG1174|consen 427 AEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--D 501 (564)
T ss_pred HHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--C
Confidence 98887664 44456778888889999999999999999887 4788899999999999999999999999998884 4
Q ss_pred CC
Q 038914 506 PN 507 (570)
Q Consensus 506 p~ 507 (570)
|+
T Consensus 502 P~ 503 (564)
T KOG1174|consen 502 PK 503 (564)
T ss_pred cc
Confidence 54
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=1.5e-09 Score=103.80 Aligned_cols=295 Identities=15% Similarity=0.124 Sum_probs=197.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch-HH
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT-YN 156 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~ 156 (570)
..-...++...|++++|++.++.-... -+|...+......+ +.+.|+.++|..+|..+++.+ |+... |.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~l------l~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~ 76 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAEL------LLKLGRKEEAEKIYRELIDRN--PDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence 333456678899999999999886655 45554444333322 334569999999999999984 44444 44
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHH
Q 038914 157 TLINGLCRT-----GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV-DKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 157 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~ 230 (570)
.+..+..-. .+.+...++++++.... |.......+.-.+.....+ ..+...+..+...|+| .+
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---sl 145 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SL 145 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hH
Confidence 455544222 35677788888887754 4333333333222222223 3445566677777765 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQ----G----------VQPNV--VTFTVIMDELCKNGKMDGASRLLELMILRGV 294 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 294 (570)
|..|-..|.......-...++...... + -+|+. +++..+...|...|++++|+.++++.+..
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 666666666565555555666555432 1 12333 35566777888899999999999999887
Q ss_pred CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----
Q 038914 295 KPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV---- 369 (570)
Q Consensus 295 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 369 (570)
.|+ +..|..-.+.+-..|++.+|.+.++.....+ ..|...-+..+..+.+.|++++|.+++......+..|...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 344 6678888889999999999999999988875 3366677777888889999999999998887765433221
Q ss_pred ----hHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 038914 370 ----TYHTLFLGLFEVHQVEHALKLFDEMRR 396 (570)
Q Consensus 370 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (570)
-......+|.+.|++..|++.|..+.+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 124456778888888888887777654
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=4.2e-11 Score=118.66 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC---------RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID 201 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (570)
+.+++|+..|++.++..+ .+...|..+..++. ..+++++|...++++.+.+ +.+...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 467899999999988732 23455665655443 2345789999999998876 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
++...|++++|+..|+++.+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHH
Confidence 8889999999999999988874 335677888888899999999999999998886433 22233344555667888889
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
|...++++.....+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99988888765322244456677778888899999998888876542 223444555666666666 467776666655
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5.3e-12 Score=107.03 Aligned_cols=230 Identities=12% Similarity=0.059 Sum_probs=198.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID 411 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (570)
|-.--+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..+...|.+..+...|+.++.+-.+. ++.+......+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333467899999999999999999998886 567889999999999999999999999998876 3556666777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
.+...++.++|.++++.+.+.. +.++....++...|.-.++++-|+++|.++++.|+ .+...|+.++-+|...++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 8999999999999999999876 67888888888899999999999999999999884 578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914 492 AHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 567 (570)
++.-|++++..--.|+ ..+|..+.......|++.-|.+.|+-.+..+ ....+.++.+.-.-.+.|+.++|...+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999999988644455 4578888888889999999999999988654 4457888888888899999999988765
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=1.1e-10 Score=99.93 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=209.0
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
+.+...|..++.+|++.+|+..|..+++.+| .+-.++..-+..|...|+-..|+.-+.+.++. .||-. .+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~------~A 108 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM------AA 108 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH------HH
Confidence 3455677778889999999999999999998 78888999999999999999999999999987 77743 33
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC--cchHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPD--VFTYNTL------------INGLCRTGHTIVALNLFEEMANGNGEI 185 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~ 185 (570)
-...|..+.++|++++|..-|+.++......+ ..++..+ +..+.-.|+...|+.+...+++..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--- 185 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--- 185 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---
Confidence 44556788899999999999999998743211 1122211 223445788888888888888864
Q ss_pred CcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 038914 186 GVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVT 265 (570)
Q Consensus 186 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 265 (570)
+.|+..+..-..+|...|.+..|+.-++...+.. ..+..++..+...+...|+.+.++....+.++. .|+...
T Consensus 186 ----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 186 ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred ----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 5677888888888999999888888887776653 236677777778888888888888888888775 344322
Q ss_pred HHH----H---------HHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914 266 FTV----I---------MDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKIDRARELFVSMESNGC 329 (570)
Q Consensus 266 ~~~----l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 329 (570)
+.. + +......++|.++++..+...+...... ...+..+..++...+++.+|++...++++..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d- 337 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID- 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence 111 1 1223445556666666666555432211 1234444555566666666666666666553
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 330 MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK 362 (570)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (570)
+.|+.++..-..+|.-..+++.|+.-|+...+.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 234556666666666666666666666666654
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.5e-10 Score=101.78 Aligned_cols=439 Identities=14% Similarity=0.060 Sum_probs=229.9
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
...|...++.|+++.|+..|..++..+| +|...|..-..+|...|+|++|++=-.+.++. .|+.. .+|.+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~------kgy~r 75 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWA------KGYSR 75 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchh------hHHHH
Confidence 4457777889999999999999999999 68889999999999999999999988888877 55432 45555
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH---HHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEIGVVCKPDTVTYTTI 199 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (570)
.|..+.-.|++++|+..|.+-++.. +.+...++.+..++.......+. -.++.......... .......|..+
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---~~~~~~~~~~~ 151 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---YSLSDPAYVKI 151 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---hhhccHHHHHH
Confidence 5555555689999999999988863 22445566666665111000000 00111110000000 00001112222
Q ss_pred HHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH----HHHHHHHHHHH-CCCCCChhhH
Q 038914 200 IDGLCKK-------GFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWN----EAKHLFIEMMD-QGVQPNVVTF 266 (570)
Q Consensus 200 ~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~~-~~~~~~~~~~ 266 (570)
+..+-+. .+.....+..-.+...+.. .+...-..... ..... .......+..+ ....--..-.
T Consensus 152 l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHhhcCcHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 2211110 0000000100000000000 00000000000 00000 00000000000 0000011224
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-------H
Q 038914 267 TVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI-------L 339 (570)
Q Consensus 267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 339 (570)
..++++..+..+++.+++-+....... .+..-++....+|...|.+.++....+...+.|.. ....|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 456667777777777777777777653 35555566666777777777776666665554421 1222222 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914 340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI 419 (570)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 419 (570)
..+|.+.++++.++..|.+.......|+. ..+....+++....+...-.+... ..-...-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 33555566777777777776554222221 122233344444443332222111 11222235556677777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
..|+..|.++++.. |.|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+++.|.+.|.+.
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766 6677777777777777777777777777666642 223345555555666667777777777777
Q ss_pred HHCCCCCCHHHHHHHHH
Q 038914 500 EAKGLEPNFVIFNTLML 516 (570)
Q Consensus 500 ~~~~~~p~~~~~~~l~~ 516 (570)
++. .|+..-+...+.
T Consensus 453 le~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 453 LEL--DPSNAEAIDGYR 467 (539)
T ss_pred Hhc--CchhHHHHHHHH
Confidence 764 354444433333
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-09 Score=103.94 Aligned_cols=126 Identities=17% Similarity=0.027 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHH
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLC 484 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 484 (570)
|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|...... .|+. .....++.++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 3344444555555555555555554433 344455555555555566666666666655552 3332 45555666666
Q ss_pred hcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 485 NDGQMDKAHG--LFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 485 ~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
..|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 6665555555 555555532 2245566666666666666666666666555
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.7e-10 Score=102.25 Aligned_cols=200 Identities=13% Similarity=0.041 Sum_probs=125.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914 333 VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG 412 (570)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (570)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666665542 1234455555666666666666666666665543 3344555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 413 LCKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
+...|++++|...++++..... +.....+..+..++...|++++|...+++..+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6677777777777777665321 1233455566667777777777777777777642 2234566677777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 492 AHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
|..+++++... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 87777777665 233455566666677777777777777776653
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.4e-10 Score=102.70 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=123.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 3455666677777777777777777776653 3345666677777777777777777777776653 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL 310 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (570)
..+...+...|++++|...++........ .....+..+..++...|++++|...+++..... +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 66667777777777777777776653211 123345555666666677777777766666542 2234455556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 311 TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
.|++++|...++++.... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666666666665542 33444455555556666666666666555443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=1.3e-10 Score=94.05 Aligned_cols=199 Identities=13% Similarity=-0.023 Sum_probs=144.9
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILIN 118 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 118 (570)
......|...+..|++..|..-++++++.+| .+..+|..++..|.+.|+.+.|.+.|+++++. .|+.. ..+..-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG- 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYG- 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhh-
Confidence 4455566677888899999999999998888 78888888888899999999999999988887 45433 223222
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFG-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT 197 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
.-+|.+|++++|...|++.+..- +..-..+|..++-+..+.|+++.|...|++.++.+ +....+..
T Consensus 111 ------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------p~~~~~~l 177 (250)
T COG3063 111 ------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------PQFPPALL 177 (250)
T ss_pred ------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------cCCChHHH
Confidence 22444568888888888877642 12234567777777778888888888888888765 33456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
.+.....+.|++-.|...++.....+. ++..+.-..|..-...|+.+.+.++=..+.+.
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777778888888888888888777655 67777777777777778877776665555543
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-08 Score=93.56 Aligned_cols=421 Identities=13% Similarity=0.055 Sum_probs=258.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cchHHHHH
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VFTYNTLI 159 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 159 (570)
-+.+.+..|+++.|+.+|-+++...+ ++...|..-..+++.. |+|++|++--.+..+. .|+ ...|+.++
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~-------~~~~~al~da~k~~~l--~p~w~kgy~r~G 77 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL-------GSYEKALKDATKTRRL--NPDWAKGYSRKG 77 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH-------hhHHHHHHHHHHHHhc--CCchhhHHHHhH
Confidence 34566788999999999999998853 3666777777777765 4999999888877776 454 46799999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 038914 160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI---- 235 (570)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 235 (570)
.++.-.|++++|+..|.+.++.+ +.+...+..+..++... .. +-+.|. ++..|..+.
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKD-------PSNKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPL 138 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcC-------CchHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChh
Confidence 99999999999999999999875 45566777777776111 11 111111 111121111
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcC-------------------Chh----HHHHHHHH
Q 038914 236 -CGFCYANDWNEAKHLFIEMMDQGVQPNVVTF---TVIMDELCKNG-------------------KMD----GASRLLEL 288 (570)
Q Consensus 236 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g-------------------~~~----~a~~~~~~ 288 (570)
+.+.....+..- ++.+ ..+. .+...| ..++.+..... .+. .......+
T Consensus 139 t~~~~~~~~~~~~---l~~~-~~~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d 213 (539)
T KOG0548|consen 139 TNYSLSDPAYVKI---LEII-QKNP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED 213 (539)
T ss_pred hhhhhccHHHHHH---HHHh-hcCc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch
Confidence 111111111111 1111 1000 000000 00111111000 000 00000000
Q ss_pred HHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 289 MILR-GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 289 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
..+. ....-..-...++++..+..+++.|.+.+....... .+..-++....+|...|.+......-...++.|.. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 0000 000011234557778888888999999999888764 45666777778888888888877777776665432 1
Q ss_pred hh-------hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h
Q 038914 368 VV-------TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNI-V 439 (570)
Q Consensus 368 ~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 439 (570)
.. .+..+..++.+.++++.++..|.........|+. ..+....+++....+.....+ |.. .
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~ 359 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAE 359 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence 11 2233445666778889999999887665444332 233445555555555544332 222 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF 518 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (570)
-...-...+.+.|++..|...|.+++... +.|...|.....||.+.|.+..|++-.+..++. .|+ ...|..-..++
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 12223667889999999999999999874 557789999999999999999999998888885 444 45666666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLV 554 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 554 (570)
....+|++|.+.|++.++.+ |+ ......+..+..
T Consensus 437 ~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 77889999999999999765 54 445555555544
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=5.3e-10 Score=90.66 Aligned_cols=196 Identities=12% Similarity=-0.003 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
...+.-.|...|+...|.+-+++.++.... +..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 444555566666666666666666665221 34455556666666666666666666666543 3445566666666666
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914 416 NGYIVKAVELFRTLRILK-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHG 494 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 494 (570)
.|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++.++.. +....+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 666666666666655421 11123455566666666666666666666666642 2223455556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 495 LFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
+++.....+. ++..+....+..--..|+.+.+-++=.++.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666655533 555555555555556666666655555554
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=1.6e-10 Score=108.90 Aligned_cols=248 Identities=17% Similarity=0.083 Sum_probs=151.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF----- 146 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 146 (570)
..+...++..|..+|+++.|..+++.+++.- .-.+.......+. ..|..|...+++++|..+|++++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~---~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLN---ILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHH---HHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3455669999999999999999999998761 0012222222222 2445677788999999999998753
Q ss_pred CC-CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 038914 147 GC-EPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT-VTYTTIIDGLCKKGFVDKAKELFLKMKDE- 222 (570)
Q Consensus 147 ~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 222 (570)
|. .|. ..+++.|..+|.+.|++++|...++.+.+..........|++ ..++.++..+...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 21 122 246888889999999999999998888754311000012232 24566677777788888888887765432
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 223 --NINP----NAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-------VQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 223 --~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
-+.+ -..+++.|...|...|++++|.+++++++... ..-....++.+...|.+.+.+++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 0111 23466677777777777777777777665431 1111334556666666666666666666654
Q ss_pred HHC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 290 ILR----G--VKPDTSTYNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 290 ~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
... | .+....+|..|+..|...|+++.|+++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 1 11112345555555555555555555555443
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=2.5e-09 Score=96.90 Aligned_cols=218 Identities=14% Similarity=0.043 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHhcCC-CC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 131 SRIMEAAALFTKLRVFGC-EP--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
+..+.++..+.+++.... .| ....|..+...+...|+.++|+..|+++.+.+ +.+...|+.+...+...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCC
Confidence 466777777877775421 11 13457777778888888888888888888865 455778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
++++|.+.|++..+... -+..+|..+..++...|++++|++.++...+.. |+..........+...+++++|...+.
T Consensus 113 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 113 NFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88888888888887532 256677778888888888888888888888753 333222222223345677888888886
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN---GC---MHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
+..... .++... ..+ .....|+...+ ..++.+.+. .. +.....|..+...+...|++++|+..|++..+
T Consensus 190 ~~~~~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655432 222221 122 22334444333 233333321 00 11234677777778888888888888888777
Q ss_pred CC
Q 038914 362 KG 363 (570)
Q Consensus 362 ~~ 363 (570)
.+
T Consensus 265 ~~ 266 (296)
T PRK11189 265 NN 266 (296)
T ss_pred hC
Confidence 53
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.33 E-value=1e-08 Score=100.20 Aligned_cols=482 Identities=13% Similarity=0.027 Sum_probs=291.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
+.+.+...|+..|-++++.++ .-..+|..|+..|....+...|.+.|+++.+.. ..+..........+++.
T Consensus 469 ~~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~------ 539 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE------ 539 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc------
Confidence 456678999999999999988 667889999999999889999999999998763 12333444445555554
Q ss_pred hCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 130 ESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
.+++.|..+.-..-+.... .-...|....-.|.+.+++.+|+.-|+...+.+ +.|...|..++.+|...|+
T Consensus 540 -~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-------PkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 540 -STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-------PKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred -ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-------chhHHHHHHHHHHHHhcCc
Confidence 5888888884333322100 011234445666788999999999999999976 6789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChhH
Q 038914 209 VDKAKELFLKMKDENINPNA-VTYTSLICGFCYANDWNEAKHLFIEMMDQG------VQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
+..|.++|.++... .|+. ..---..-..+..|.+.++++.+..++... ...-..++..+...+...|-..+
T Consensus 612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999988775 3332 222223344568899999999998887531 11112333333334444444444
Q ss_pred HHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---H-
Q 038914 282 ASRLLELMIL-------RGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV---E- 350 (570)
Q Consensus 282 a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~- 350 (570)
+..+++..++ .....+...|..+..+ ..+|-... .+ .|+......+..-.-..+.. +
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhH
Confidence 4444444332 2212233333333222 22222222 11 12222111221111112211 1
Q ss_pred --HHHHHHHHHHhCCCCCChhhHHHHHHHHhh-------c-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914 351 --EGLNLYRKMLSKGIRPTVVTYHTLFLGLFE-------V-HQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV 420 (570)
Q Consensus 351 --~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (570)
-+.+.+-.-.+ ...+..++..++..|.+ . .+...|+..++...+.. ..+...|+.+.- ....|++.
T Consensus 758 l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva 833 (1238)
T KOG1127|consen 758 LFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVA 833 (1238)
T ss_pred HHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhh
Confidence 11111111111 11123344444443332 1 22346777777766542 334555555554 46668888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
-+...|-+..... +....+|..+...+....+++.|...|...+... +.|...|..........|+.-++..+|..--
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 8888877766554 6677888888888889999999999999888742 3355667666666667888888888876622
Q ss_pred ----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914 501 ----AKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM---------RNVMPDASTLSIVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 501 ----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 567 (570)
..|--|+...|..........|+.++-+...+++.. .+.+.+.-.|...+..+.+.+.+.++.+.+.
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 224455666666666666677777766555554421 1333345567777777777777777776655
Q ss_pred h
Q 038914 568 R 568 (570)
Q Consensus 568 ~ 568 (570)
|
T Consensus 992 R 992 (1238)
T KOG1127|consen 992 R 992 (1238)
T ss_pred H
Confidence 4
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=3.5e-10 Score=108.76 Aligned_cols=273 Identities=15% Similarity=0.182 Sum_probs=181.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 215 LFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV 294 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 294 (570)
++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556667788888889999999999999988888 8888877777777788888888877777776665
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHH
Q 038914 295 KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHT 373 (570)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ 373 (570)
.|...+|..|..+|...||+.. .+..++ ....+...+...|-......++..+.-. +.-||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 5677888888888888888765 222222 1122233344445444444455443322 23344332
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038914 374 LFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG-YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG 452 (570)
Q Consensus 374 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (570)
.+....-.|-++.+++++..+..... ..+... +++-+.... .+++-..+.....+ .++..+|..++.+-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 23333445667777777655432210 011111 233333222 23333333333332 588888999998888899
Q ss_pred CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038914 453 RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNE 523 (570)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (570)
+.+.|..++.+|.+.|++.+.+-|..|+.+ .++...++.+++.|.+.|+.|+..|+...+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999988888888777765 77888888888899999999999998877777776544
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3e-09 Score=89.50 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=139.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
+..++.+|++++..-.++.| .+......++.+|....++..|-..|+++... .|....|...-. .++.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A------QSLY~A 91 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA------QSLYKA 91 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH------HHHHHh
Confidence 34578999999999888887 78888999999999999999999999999877 566655543322 223445
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
+.+..|+.+...|.+. ++.. +...-.....+.+|+..+..+++.....+ +..+.+.......+.|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKEGQ 159 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeecccc
Confidence 7999999999887642 2222 12222223356799999999999876433 56677777888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ 260 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (570)
++.|++-|+...+-+---....|+..+ +..+.|+++.|++...+++++|+.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999999988764332455666544 455789999999999999988754
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=2.9e-08 Score=93.93 Aligned_cols=273 Identities=11% Similarity=-0.035 Sum_probs=153.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
....+|..++..+...|+.+.+.+.+.+...... .++...... +.+. .+...|++++|...++++.+.. +.+
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~-----~~~~~g~~~~A~~~~~~~l~~~-P~~ 76 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEAL-----SAWIAGDLPKALALLEQLLDDY-PRD 76 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHH-----HHHHcCCHHHHHHHHHHHHHHC-CCc
Confidence 6677788888888888888887777777665522 122222211 1111 1233578888888888887763 223
Q ss_pred cchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 152 VFTYNTLINGLC----RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN 227 (570)
Q Consensus 152 ~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 227 (570)
..++.. ...+. ..+....+.+.++..... .+........+..++...|++++|++.+++..+.. +.+
T Consensus 77 ~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~ 147 (355)
T cd05804 77 LLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDD 147 (355)
T ss_pred HHHHHH-hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence 333332 22222 234455555555441111 12334455566777888888888888888888764 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhH-H
Q 038914 228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ-PNV--VTFTVIMDELCKNGKMDGASRLLELMILRGV-KPDTSTY-N 302 (570)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~ 302 (570)
...+..+..++...|++++|...+++....... ++. ..|..+...+...|++++|..+++++..... .+..... +
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 667778888888888888888888887765321 222 2344677788888888888888888754321 1111111 1
Q ss_pred --HHHHHHHhcCCHHHHHHH--H-HHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 303 --TLIDGYCLTGKIDRAREL--F-VSMESNGC-MHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 303 --~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
.++..+...|..+.+.++ + ........ ............++...|+.+.|..++..+..
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 222333333433333322 1 11111100 00111112345566677777777777777655
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.6e-09 Score=102.23 Aligned_cols=206 Identities=18% Similarity=0.151 Sum_probs=119.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNG-EIGVVCKPDTVT-YTTIIDGLCKKGFVDKAKELFLKMKDE-----N- 223 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 223 (570)
..+...+...|...|++++|+.+++...+.-. ..|. ..|.+.+ .+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 35677789999999999999999999887510 0000 1344433 344778888888888888888887643 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914 224 -INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-----GV-QPNV-VTFTVIMDELCKNGKMDGASRLLELMILR--- 292 (570)
Q Consensus 224 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 292 (570)
.+--..+++.|...|.+.|++++|...++...+. +. .|.. ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122456677777888888888887777766542 11 1111 23445555666677777777776655432
Q ss_pred CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 293 GVKPD----TSTYNTLIDGYCLTGKIDRARELFVSMESNG-------CMHDVVSYSILINGYCKTKDVEEGLNLYRK 358 (570)
Q Consensus 293 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (570)
-+.++ ..+++.+...|...|++++|.++++.++... ..-....++.+...|.+.+.+.+|.++|.+
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 01111 2345555555555666666655555544321 001122344445555555555555555544
No 87
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=5e-09 Score=101.09 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=75.8
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLK 218 (570)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 218 (570)
++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-.. .+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC-----
Confidence 4556667789999999999999999999999988 888888776 5667788899988888888877765
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914 219 MKDENINPNAVTYTSLICGFCYANDWNE 246 (570)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 246 (570)
.|...+|..|..+|...||...
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH
Confidence 5688899999999999998765
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=7.4e-08 Score=82.97 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=182.6
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-hHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-TYTTIID 201 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 201 (570)
+|..+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.=+.+.++ .+||-. +-..-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHHHHHHHhch
Confidence 3444555678889999888887652 11223344455678888888888888888887 467633 3344566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
.+.+.|.+++|..-|+.++.... +.. ...++..-+..+.+ .......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~--s~~-------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEP--SNG-------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCC--Ccc-------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence 78888999999999988887632 211 11111111111000 0111223334445566666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
|+.....+++.. +.|...+..-..+|...|++..|+.=++.+.+.. ..+...+-.+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666666542 3455556666666666666666666555554443 22444455555556666666666666666555
Q ss_pred CCCCCChhh----HHH---H------HHHHhhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHhcCCHHHHHHH
Q 038914 362 KGIRPTVVT----YHT---L------FLGLFEVHQVEHALKLFDEMRRNHVAANT---YIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 362 ~~~~~~~~~----~~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
. .||... |.. + +......++|.++++..+...+....... ..+..+-.++...+++.+|++.
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 3 333221 111 1 12233456777777777777665433112 2344445566667788888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
-.++.... +.|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus 330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777654 445777777778888888888888888887774
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=1.1e-08 Score=92.78 Aligned_cols=119 Identities=11% Similarity=-0.019 Sum_probs=57.8
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914 277 GKMDGASRLLELMILRG-VKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGL 353 (570)
Q Consensus 277 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 353 (570)
+..+.++.-+.+++... ..|+ ...+..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555555321 1111 2234444455555555555555555555543 224455555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914 354 NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN 397 (570)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (570)
..|++.++.... +..++..+...+...|++++|...++...+.
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555543211 2334444444555555555555555555443
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=5.5e-08 Score=95.30 Aligned_cols=197 Identities=13% Similarity=0.040 Sum_probs=135.5
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL 121 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (570)
+...|..+..--+...|.+-|+++.+.++ .+..++...+..|.+..+++.|..+.-...+. .|- ..-...+.
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a----~~~k~nW~ 566 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQK--APA----FACKENWV 566 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chH----HHHHhhhh
Confidence 33344333333366799999999999998 78899999999999999999999984443332 111 11122333
Q ss_pred hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH
Q 038914 122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII 200 (570)
Q Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 200 (570)
..|-.+...+++..|+..|+...+.. +.|...|..++.+|...|++..|+.+|.++...+ |+ ...-.-..
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A 637 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEA 637 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHH
Confidence 36677788899999999999998875 3478899999999999999999999999998854 43 22222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 201 DGLCKKGFVDKAKELFLKMKDE------NINPNAVTYTSLICGFCYANDWNEAKHLFIEMM 255 (570)
Q Consensus 201 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 255 (570)
..-+..|.+.+|+..+..+... +..--..++..+...+...|-...+.+++++.+
T Consensus 638 ~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3455679999999999887643 111123344444444455555555555555443
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.2e-07 Score=86.84 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=194.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--------C-CCCCHhh-HHHHHH
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST--------G-LFPDLYA-YNILIN 118 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~-~~~~l~ 118 (570)
++.-|+.|.|.+..+-+ .+...|..++..+.+.++.+-|.-.+..|... . -.++... -..++
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL- 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL- 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH-
Confidence 45789999998888777 56678999999999988888776555444221 0 0122111 11111
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
... .|.+++|..+|.+..+. ..|-..|...|.+++|.++-+.--+.. --.+|..
T Consensus 810 -Aie-------LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~ 863 (1416)
T KOG3617|consen 810 -AIE-------LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYN 863 (1416)
T ss_pred -HHH-------HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHH
Confidence 122 36899999999988754 244456677899999998877543322 2457777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDE----------N---------INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV 259 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 259 (570)
....+-..++.+.|++.|++.... . -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 778888888899998888764221 0 011333444445555567788888888776543
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038914 260 QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSIL 339 (570)
Q Consensus 260 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (570)
|..+++..|-+|+.++|-++-++- -|......+.+.|-..|++.+|...|.+... +...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 556777777888888888876653 2666777788888889999998888876543 2222
Q ss_pred HHHHHhc-------------C--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH--------H-
Q 038914 340 INGYCKT-------------K--DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEM--------R- 395 (570)
Q Consensus 340 ~~~~~~~-------------~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~- 395 (570)
|+.|-.+ + +.-.|-.+|++. |. -+...+..|-+.|.+.+|+++--.- +
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 2222211 1 122222333321 10 1122333455556665555442111 1
Q ss_pred -hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 396 -RNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 396 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
......|+..++.....++...++++|..++-...
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 12234566777777777777888888877776554
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=7.3e-08 Score=91.18 Aligned_cols=296 Identities=12% Similarity=0.029 Sum_probs=184.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchh
Q 038914 52 TITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILINCFLQNGSSLCV 129 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 129 (570)
.|++++|...+....+..+...+ .......+..+...|++++|.+.+++++.. .|+.. .+.. ...+...| ..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~---~~ 92 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLG---DF 92 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhc---cc
Confidence 45788888888888777662222 234445566778899999999999999987 45433 2221 11122222 11
Q ss_pred hCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 130 ESRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
.+..+.+.+.++.... ..|+ ......+...+...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 93 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 93 SGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred ccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCC
Confidence 3455566665554211 1222 2344456677889999999999999999975 4567788999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHhcCChhH
Q 038914 209 VDKAKELFLKMKDENI-NPNA--VTYTSLICGFCYANDWNEAKHLFIEMMDQGV-QPNVVTF-T--VIMDELCKNGKMDG 281 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~ 281 (570)
+++|++.+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999999887532 1232 3456788899999999999999999865422 1111111 1 22333444554444
Q ss_pred HHHH--HHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHhhHHHHHHHHHhcCCH
Q 038914 282 ASRL--LELMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---H-----DVVSYSILINGYCKTKDV 349 (570)
Q Consensus 282 a~~~--~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~~~~ 349 (570)
+.++ +........... .........++...|+.+.|..+++.+...... . .........-++...|+.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 4433 211111111111 122224567778899999999999887663211 0 111122223345577888
Q ss_pred HHHHHHHHHHHhC
Q 038914 350 EEGLNLYRKMLSK 362 (570)
Q Consensus 350 ~~A~~~~~~~~~~ 362 (570)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776653
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.8e-07 Score=87.56 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCH
Q 038914 305 IDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQV 384 (570)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (570)
+.+.....++.+|+.+++.+.... .-..-|..+..-|...|+++.|.++|.+. ..+...+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455566666666666665542 22333555666667777777777766532 1234455566677777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 385 EHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELF 426 (570)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 426 (570)
++|.++-.+... .......|..-..-+-..|++.+|.+++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777666555432 2222333433344444555555555544
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.2e-10 Score=73.21 Aligned_cols=48 Identities=40% Similarity=0.827 Sum_probs=22.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.2e-10 Score=73.15 Aligned_cols=49 Identities=49% Similarity=0.916 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 191 PDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=6.9e-09 Score=95.64 Aligned_cols=223 Identities=15% Similarity=0.058 Sum_probs=158.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914 48 GDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL 127 (570)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (570)
.+++.|++.+|.-.|+.+++.+| .+..+|..|+.....+++-..|+..++++++. .|+.......+.. .|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAV------Sy 363 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAV------SY 363 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHH------HH
Confidence 34678899999999999999999 89999999999999999999999999999987 6765443333332 24
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHH---------HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLI---------NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
..+|.-.+|++.++..+...++ ..|.... ..+.....+....++|-++....+ ..+|...+..
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~ 435 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSG 435 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhh
Confidence 4467888999999988764311 0110000 011122233444555555555432 3467788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcC
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTFTVIMDELCKNG 277 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 277 (570)
|...|.-.|++++|++.|+.++... +-|...||.|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence 8888888888888888888888753 236778888888888888888888888888875 444 344555666788888
Q ss_pred ChhHHHHHHHHHHH
Q 038914 278 KMDGASRLLELMIL 291 (570)
Q Consensus 278 ~~~~a~~~~~~~~~ 291 (570)
.+++|.+.|-.++.
T Consensus 513 ~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 513 AYKEAVKHLLEALS 526 (579)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888766654
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.2e-06 Score=94.16 Aligned_cols=338 Identities=12% Similarity=-0.004 Sum_probs=214.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--hhhHHHHHH
Q 038914 200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV------QPN--VVTFTVIMD 271 (570)
Q Consensus 200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 271 (570)
.......|+++.+..+++.+.......+..........+...|+++++..++......-. .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344556678887777776653211111233334455566788999999999987754311 111 112223345
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHH
Q 038914 272 ELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGC---MH--DVVSYSILING 342 (570)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 342 (570)
.+...|++++|...+++........+. ...+.+...+...|++++|...+++...... .+ ...+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 567899999999999998764111121 2345566677889999999999988764311 11 12345566778
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC--CCc--CHHHHHHHHH
Q 038914 343 YCKTKDVEEGLNLYRKMLSK----GIR--P-TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH--VAA--NTYIYTTFID 411 (570)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 411 (570)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887652 211 1 12233445556777899999999988775421 111 2334444566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYEL-NIVSY-----NCLIDGLCKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHG 482 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~ 482 (570)
.+...|+++.|...++.+....... ....+ ...+..+...|+.+.|...+............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999998875431111 11111 11224445689999999998776542111111 114567778
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 483 LCNDGQMDKAHGLFLDMEAK----GLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
+...|++++|...++++... |...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999987653 32222 235566777889999999999999999854
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.2e-07 Score=77.57 Aligned_cols=353 Identities=15% Similarity=0.151 Sum_probs=213.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT 157 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (570)
+...+..+.+..++..|++++..-.+. .|....-.+++..| |....++..|...|+++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyC------YY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYC------YYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 445556667888999999998888776 45344434444444 22346899999999998765 344444433
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 158 -LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236 (570)
Q Consensus 158 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 236 (570)
-...+.+.+.+.+|+.+...+.... .....+...-.......+++..+..+.++....| +..+.+....
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 3456678899999999988876521 0011222222233446788888888888887543 5556666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcC
Q 038914 237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTST----YNTLIDGYCLTG 312 (570)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~ 312 (570)
...+.|++++|.+-|+...+.+---....|+..+ +..+.|++..|++...+++.+|+...+.. ....+.+- ..|
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-ccc
Confidence 7788999999999999888764332345666544 55677899999999999988876532211 00011100 001
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKG-IRPTVVTYHTLFLGLFEVHQVEHALKLF 391 (570)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (570)
+. ..+. ..+ -+..+|.-...+.+.++++.|.+.+..|..+. ...|+.|...+...- ..+++.+...-+
T Consensus 231 Nt---~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 231 NT---LVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred ch---HHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 10 0000 000 12345555666788899999999888876542 234666766654332 234455555556
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhhh
Q 038914 392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLC-KHGRLEIAWELFSSLP 465 (570)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 465 (570)
.-+....+ -...+|..++-.||+..-++.|-.++-+-..... -.+...|+ +++++. ..-..++|++-++.+.
T Consensus 300 qFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 300 QFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 66666543 4467788888889998888888877754221111 12333343 334443 3446677776666544
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=6.4e-06 Score=79.67 Aligned_cols=172 Identities=17% Similarity=0.118 Sum_probs=88.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914 84 CLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 163 (570)
Q Consensus 84 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (570)
.....|..++|..+|.+..+.. +++-+ |..+|.+++|.++-+.--+. . -..+|.....-+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D----------LlNKl------yQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD----------LLNKL------YQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLE 869 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH----------HHHHH------HHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHH
Confidence 3345677777777777666431 11211 22245777776655532211 1 1134445555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-------------cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 164 RTGHTIVALNLFEEMANGNGEIG-------------VVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
..+|.+.|++.|++......+.. +....|...|.-....+-..|+.+.|+.+|....+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 56666666666665321100000 00011233333444444556777777777765544
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
|.++++..|-+|+.++|-++-++- -|......+.+.|-..|++.+|..+|-+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445556666666666666655432 14445555666666666666666666443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.4e-06 Score=93.54 Aligned_cols=341 Identities=9% Similarity=-0.074 Sum_probs=214.1
Q ss_pred chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC--hhhHHHHHHHHH
Q 038914 127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD--TVTYTTIIDGLC 204 (570)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 204 (570)
....|+++.+..+++.+.......+..........+...|++++|..+++.+...-...+....+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344578888777776653211112333334455556678999999999988765321100000111 222333455667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHh
Q 038914 205 KKGFVDKAKELFLKMKDENINPNA----VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ-----PNVVTFTVIMDELCK 275 (570)
Q Consensus 205 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~ 275 (570)
..|++++|...+++........+. ...+.+...+...|++++|...+++....... ....+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999988763111121 24455667788899999999999887653111 112345566778889
Q ss_pred cCChhHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHH
Q 038914 276 NGKMDGASRLLELMILR----GVK--P-DTSTYNTLIDGYCLTGKIDRARELFVSMESN----GCMHDVVSYSILINGYC 344 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 344 (570)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887653 211 1 1233445566777889999999998887553 11112334555667788
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCChh--hH--HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHh
Q 038914 345 KTKDVEEGLNLYRKMLSKG--IRPTVV--TY--HTLFLGLFEVHQVEHALKLFDEMRRNHVAANT---YIYTTFIDGLCK 415 (570)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 415 (570)
..|+++.|...+..+.... ...... .. ...+..+...|+.+.|..++............ .....+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998875521 110110 10 11123345578999999888775542211111 113456677888
Q ss_pred cCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 416 NGYIVKAVELFRTLRIL----KYEL-NIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
.|++++|...++++... +... ...+...+..++...|+.++|...+.++.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887643 2111 1245666777888999999999999998874
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.1e-08 Score=91.46 Aligned_cols=216 Identities=16% Similarity=0.125 Sum_probs=95.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914 273 LCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEG 352 (570)
Q Consensus 273 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 352 (570)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555542 2244455555555555555555555555555553 23444555555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHH-----------HHHhhcCCHHHHHHHHHHHH-hCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914 353 LNLYRKMLSKGIRPTVVTYHTLF-----------LGLFEVHQVEHALKLFDEMR-RNHVAANTYIYTTFIDGLCKNGYIV 420 (570)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (570)
...|++.+...++ |..+. ..+.......+..++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 5555555442110 00000 01111111222223332222 2222234444444444444444445
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 038914 421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLD 498 (570)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (570)
+|...|+.++... |-|..+||.|...++...+.++|+..|.++++ +.|+- .+...|+-+|...|.+.+|.+.|-.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 5544444444433 33444444444444444444444444444444 23332 2333444444444444444444443
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=8.2e-07 Score=84.49 Aligned_cols=191 Identities=16% Similarity=0.180 Sum_probs=125.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914 342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK 421 (570)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 421 (570)
-+...|+++.|+..|-+.. .....+.+......|.+|+.+++.+..... -..-|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 3444556666655554322 234455566677788888888887776532 33456677788888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 422 AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|.++|-+.- .++..+.+|.+.|+|+.|.++-.+... .......|..-..-+-.+|++.+|.+++-...
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 888875432 244557788888888888888777654 23344556666666777888888888764443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhh
Q 038914 502 KGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQF 566 (570)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 566 (570)
.|+. .+..|-+.|..+..+++.++-.. ..-..|...+..-|...|++.+|-+.|
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 2443 34567788888888888777641 112456777778888888888776665
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=1.3e-08 Score=90.81 Aligned_cols=150 Identities=18% Similarity=0.109 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----c
Q 038914 341 NGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----N 416 (570)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 416 (570)
.++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ +..+...++.++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 3444555666665555421 244445555555566666666666666655432 12222223332221 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHH
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM-DKAHGL 495 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 495 (570)
+.+.+|..+|+++... .++++.+.+.++.+....|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 2456666666665433 24555556666666666666666666666655432 23445555555555555555 444555
Q ss_pred HHHHHH
Q 038914 496 FLDMEA 501 (570)
Q Consensus 496 ~~~~~~ 501 (570)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 555554
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.05 E-value=2.6e-05 Score=76.53 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=151.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
+..+++..|++.....++..| ....+-..-+-.+.+.|+.++|..+++.....+.. |..+...+-..|.+.
T Consensus 20 ld~~qfkkal~~~~kllkk~P--n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~------ 90 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP--NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL------ 90 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH------
Confidence 346689999999999999988 44444444455678999999999998888766543 777777777776665
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-C
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-F 208 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 208 (570)
+.+++|..+|++.... .|+......+..+|.+.+.+.+-.++--++.+. .+.+...+=+++..+.+.- .
T Consensus 91 -~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 91 -GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred -hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccC
Confidence 5999999999999876 556666667778888887776544444444332 2334444444444444321 1
Q ss_pred ---------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 209 ---------VDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFI-EMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 209 ---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
..-|...++.+.+.+ .--+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 234566677766654 22222333333455667899999999993 3333323334444456677788899
Q ss_pred ChhHHHHHHHHHHHCC
Q 038914 278 KMDGASRLLELMILRG 293 (570)
Q Consensus 278 ~~~~a~~~~~~~~~~~ 293 (570)
++.+..++..++...|
T Consensus 241 ~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG 256 (932)
T ss_pred ChHHHHHHHHHHHHhC
Confidence 9999999999999875
No 105
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=8e-07 Score=80.46 Aligned_cols=207 Identities=12% Similarity=0.099 Sum_probs=146.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
..++.++|+..++.+++.+| .+..+|+....++...| .+++++..+++++..... +...+...-..+...|
T Consensus 49 ~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~----- 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG----- 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-----
Confidence 35588999999999999999 88889999998888888 689999999999987432 2223433322333333
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc---
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK--- 206 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 206 (570)
....++++..++++++.. +.+..+|+...-++...|+++++++.++++++.+ +.+..+|+....++.+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHhcccc
Confidence 112367899999998875 3478899999999999999999999999999986 45677887777666554
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914 207 GFV----DKAKELFLKMKDENINPNAVTYTSLICGFCYA----NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275 (570)
Q Consensus 207 g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (570)
|.. ++.++...+++... +-|...|+-+...+... +...+|...+.+....++ .+......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 222 45666666666653 34677777777777663 334557777777665432 245556666666664
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=3.5e-08 Score=87.99 Aligned_cols=255 Identities=12% Similarity=0.090 Sum_probs=164.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914 271 DELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE 350 (570)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (570)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44555677777776555 222221222334555677888888876544 3333333 455555555555554445556
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 351 EGLNLYRKMLSKGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429 (570)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 429 (570)
.++.-++........+.. .........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555444333222 22233334566789999999888642 35667777889999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 430 RILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE 505 (570)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (570)
.+.. .| .+...++.++.. .+.+.+|.-+|+++.+. ..++..+.+.++.++...|++++|.+++.+....+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8653 33 444455555543 33689999999998775 56788899999999999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCH
Q 038914 506 PNFVIFNTLMLGFIRNNET-SKVIELLHRMDMRNVMPDA 543 (570)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~ 543 (570)
-+..++..++.+....|+. +.+.+++.++... .|+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 3677888888888888888 6788888888853 4543
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3e-05 Score=76.94 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=61.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG 377 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (570)
+.+|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+.+....+..-.|... ..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345666666666666666665544332 244556666666666666666666666665553333333 455556
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038914 378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFR 427 (570)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 427 (570)
|++.++..+..+++ ..|+......+..-|...+.++.|.-+|.
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 66666655544332 13444445555555555555555544443
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.2e-05 Score=75.97 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (570)
..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....+..-.|.+ -..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 44555555555555555555444321 13444555555555555555555555555444333322 23445555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (570)
++.++..+.++++. .|+......+..-|...+.++.|.-+|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 55555444433221 1344444444444455555554444443
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=5.7e-07 Score=85.64 Aligned_cols=215 Identities=15% Similarity=0.083 Sum_probs=163.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF 379 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (570)
.-..+...+...|-...|..+++++. .|...+.+|...|+..+|..+..+..+. +|++..|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888888888887654 3667788888889888888888887773 678888888887777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914 380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459 (570)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (570)
...-+++|.++.+..... .-..+.......++++++.+.|+...+.+ +....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777778888877665432 11222222344688888888888877765 5667788888888888889999998
Q ss_pred HHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 460 LFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 460 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
.|...... .|+. ..||++..+|.+.|+-.+|...++++.+.+ .-+...|...+....+-|.+++|++.++++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888773 5554 679999999999999999999998888876 45667777777778888999999998888873
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=4e-07 Score=86.65 Aligned_cols=217 Identities=13% Similarity=0.086 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914 264 VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY 343 (570)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (570)
..-..+...+...|-..+|..+++++. .+...+.+|...|+..+|..+..+..+. +|+...|..++.+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334557778889999999999998874 4566788999999999999999888874 68999999999888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038914 344 CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAV 423 (570)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 423 (570)
....-+++|.++.+..... +-..+.....+.++++++.+.|+...+.. +....+|....-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8877889999988865442 22333333445799999999998887764 556778888888889999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 424 ELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+.|....... +.+...||.+..+|.+.|+-.+|...+++..+.+ ..+...|.+.+....+.|.+++|++.+.++..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999988765 5667899999999999999999999999999976 55667888888899999999999999999875
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=4.5e-05 Score=70.57 Aligned_cols=456 Identities=12% Similarity=0.146 Sum_probs=233.6
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHH
Q 038914 63 DYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFT 141 (570)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~ 141 (570)
+.-++.+| .|..+|+.|++-+..+ -++++++.|+++... .|.. ..|..-+..-.. ..+++...++|.
T Consensus 10 ~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~-------skdfe~VEkLF~ 77 (656)
T KOG1914|consen 10 RERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELA-------SKDFESVEKLFS 77 (656)
T ss_pred HHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHH-------hhhHHHHHHHHH
Confidence 45566777 8999999999987666 999999999999976 5643 445555554433 359999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHh-cCChhH----HHHHHHHHHhCCCCCCcccCCChhhHHHHHHH---------HHhcC
Q 038914 142 KLRVFGCEPDVFTYNTLINGLCR-TGHTIV----ALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG---------LCKKG 207 (570)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g 207 (570)
+.+.. ..+...|...+.--.+ .|+... ..+.|+-+....+ . -......|+..+.. |..+.
T Consensus 78 RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig---~-di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 78 RCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG---M-DIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred HHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc---c-CcccchhHHHHHHHHHcccccccHHHHH
Confidence 99876 3456677766653322 233322 3344444444321 0 01112234433332 23344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH------HHHHHHH-------hcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHH
Q 038914 208 FVDKAKELFLKMKDENINPNAVTYT------SLICGFC-------YANDWNEAKHLFIEMMD--QGVQPNVVTFTVIMDE 272 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 272 (570)
+++...++++++...-+.-=...|+ .=|+... +...+..|.++++++.. .|...+..+
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~------- 224 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA------- 224 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------
Confidence 5666677777776532110011111 1111100 11233344444444332 122111111
Q ss_pred HHhcCChhH--HHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHhhH-----HHH
Q 038914 273 LCKNGKMDG--ASRLLELMILR----GVK-PDTSTYNTLIDGYCLTGKIDRARELFVSM-ESNGCMHDVVSY-----SIL 339 (570)
Q Consensus 273 ~~~~g~~~~--a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~-----~~l 339 (570)
.-..|-.++ ..+++...++. ++. .+..... ....-++++. .-.+..|+.... ...
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~ 292 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI 292 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 000111111 11112111111 110 0000000 0011111111 111111111100 000
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHh---hcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 038914 340 INGYCKTKD-------VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF---EVHQVEHALKLFDEMRRNHVAANTYIYTTF 409 (570)
Q Consensus 340 ~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 409 (570)
.+.+...|+ .+++..+++..+..-..-+...|..+...-- ...+.+....+++.+.......-..+|...
T Consensus 293 s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~ 372 (656)
T KOG1914|consen 293 SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQY 372 (656)
T ss_pred hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHH
Confidence 112223333 3455566665554322222222322222111 112355556666666543222234466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcC
Q 038914 410 IDGLCKNGYIVKAVELFRTLRILKYEL-NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDG 487 (570)
Q Consensus 410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 487 (570)
++.-.+..-+..|..+|.++.+.+..+ ++.+.++++.-|+ .++..-|.++|+--+++ -+|. .--...+.-+...+
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lN 449 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLN 449 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhC
Confidence 777777788888899998888766555 5666677776554 67888899998876664 2343 33345666777788
Q ss_pred ChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHccCc
Q 038914 488 QMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMR-N--VMPDASTLSIVVDLLVKNEI 558 (570)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~ 558 (570)
+-..+..+|++.+..++.|+ ..+|..++.--..-|+...++++-+++... . ..+.-.....+++-|.=.+.
T Consensus 450 dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 450 DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 88888999999888766655 468888888888889998888888887632 1 22222344444444444433
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.1e-07 Score=83.95 Aligned_cols=186 Identities=11% Similarity=0.002 Sum_probs=108.3
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHH
Q 038914 43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA----YNILI 117 (570)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l 117 (570)
...|......|++++|+..|+.++...|..+. ..++..++.++...|++++|+..|+++++.. |+... +..+-
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~g 114 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHHHH
Confidence 33455566788999999999999999883322 3578899999999999999999999999874 43222 22222
Q ss_pred HHHHhc-CCcchhhCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhh
Q 038914 118 NCFLQN-GSSLCVESRIMEAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVT 195 (570)
Q Consensus 118 ~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (570)
.++... +..+...|++++|.+.|+++.... |+. ..+..+..... .. ... ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~-------~~~-------------~~~ 168 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR-------NRL-------------AGK 168 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH-------HHH-------------HHH
Confidence 222221 223334578999999999998763 333 22221111100 00 000 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 196 YTTIIDGLCKKGFVDKAKELFLKMKDE--NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 196 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
...+...+.+.|++++|...++...+. +.+.....+..+..++...|++++|..+++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 123344455556666665555555432 1222345555555566666666666655555544
No 113
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=4.4e-06 Score=75.73 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=137.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 161 GLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-FVDKAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
++...++.++|+.+.+++.+.+ +.+..+|+....++...| .++++++.++++...+.+ +..+|+.....+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3445577888888888888865 445667777777777777 578888888888876443 6667776665565
Q ss_pred hcCCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC-
Q 038914 240 YANDW--NEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLT---GK- 313 (570)
Q Consensus 240 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~- 313 (570)
+.|+. ++++.+++++++...+ |..+|+....++...|+++++++.++++++.+.. +...|+.....+... |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 6678888888876443 7778888888888888888888888888887533 555565555544433 22
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914 314 ---IDRARELFVSMESNGCMHDVVSYSILINGYCKT----KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE 380 (570)
Q Consensus 314 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (570)
.+.......+++... +.+...|+.+..++... +...+|.+.+.+....++ .+...+..++..|..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 245566665666554 44677777777777662 234556666666555322 244555555555543
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.1e-06 Score=87.67 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHH
Q 038914 59 LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAA 137 (570)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~ 137 (570)
..-|++.+..+| .+...|...+......++.++|++++++++.. +.+ ...--..+.-+|.+. ...-|.-+...
T Consensus 1444 aeDferlvrssP--NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNl---En~yG~eesl~ 1517 (1710)
T KOG1070|consen 1444 AEDFERLVRSSP--NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNL---ENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHHHhcCC--CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhH---HHhhCcHHHHH
Confidence 345666666666 66777888888888888888888888888764 111 111111111111111 01113445555
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 217 (570)
++|+++.+.. ..-.+|..|...|.+.+.+++|.++|+.|.+.- ......|...+..+.++++-+.|..++.
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555431 112335555555666666666666666665542 3345556666666666666666666665
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914 218 KMKDENIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296 (570)
Q Consensus 218 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 296 (570)
+..+.-.+ -........+..-.+.|+.+.+..+|+..+...++ -...|+..+..-.+.|+.+.+..+|++++..++.+
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55543111 02223333344444555555555555555554222 34455555555555555555555555555554433
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.2e-06 Score=87.43 Aligned_cols=203 Identities=12% Similarity=0.044 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESN-GCM---HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF 375 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (570)
.|...|......++.+.|.++.++++.. ++. --...|.++++.-..-|.-+...++|+++.+. ......|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 3444444444444444444444444332 000 01123444444444444444444555544442 11122344444
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 038914 376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LNIVSYNCLIDGLCKHGRL 454 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 454 (570)
..|.+.++.++|.++++.|.+.- .....+|...+..+.+.++-+.|..++.++.+.-.. -........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 44555555555555555554431 233444555555555555555555555554432100 0122233333444455555
Q ss_pred HHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914 455 EIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506 (570)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (570)
+.+..+|+..+.. .+.....|+.++..-.++|+.+.+..+|+++...++.|
T Consensus 1617 eRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555555443 12233455555555555555555555555555554444
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1.1e-06 Score=87.85 Aligned_cols=173 Identities=16% Similarity=0.122 Sum_probs=131.0
Q ss_pred HHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 39 RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN 118 (570)
Q Consensus 39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 118 (570)
++....+|... .+.+++.-.....+..| .++.++..|+.+..+.|.+++|..+++.+... .|+.......+.
T Consensus 56 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a 127 (694)
T PRK15179 56 RQVLERHAAVH----KPAAALPELLDYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILML 127 (694)
T ss_pred HHHHHHhhhhc----chHhhHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 34444455444 34444444444445555 77999999999999999999999999999987 777655443333
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
. .+.+.+++++|+..+++.+... +.+......+..++.+.|++++|..+|+++...+ +.+..++..
T Consensus 128 ~------~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~ 193 (694)
T PRK15179 128 R------GVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-------PEFENGYVG 193 (694)
T ss_pred H------HHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHH
Confidence 2 2334579999999999999874 2255677788889999999999999999999854 455889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
+..++...|+.++|...|++..+. ..+....|+.+
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 999999999999999999999876 23344555443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=2.7e-07 Score=77.72 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH-HhcCCcch
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN-CF-LQNGSSLC 128 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~ 128 (570)
..++.++++..++..++.+| .+...|..++..+...|++++|+..|+++.+. .|+.......+. ++ ...
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~----- 121 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQA----- 121 (198)
T ss_pred CchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc-----
Confidence 46788999999999999999 89999999999999999999999999999998 454444333333 22 333
Q ss_pred hhCC--HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 129 VESR--IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 129 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
|+ .++|..++++.++.++ .+..++..+...+.+.|++++|+..++++.+..
T Consensus 122 --g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 122 --GQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred --CCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45 6999999999999853 377889999999999999999999999999976
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6e-06 Score=69.09 Aligned_cols=250 Identities=12% Similarity=0.063 Sum_probs=153.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 038914 270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV 349 (570)
Q Consensus 270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (570)
++-+.-.|.+..++..-...... +-+...-..+.++|...|.+..... .+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 34555667777777665554433 1233444445667777777644332 222222 23333344444444444444
Q ss_pred HHHHH-HHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 350 EEGLN-LYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRT 428 (570)
Q Consensus 350 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 428 (570)
++-+. +.+.+.......+......-...|.+.+++++|++...... +......-+..+.+..+++.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33334433333333334444556788888888888876521 223333334556777888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 429 LRILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504 (570)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (570)
|... .+..+.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+..+.++...|++++|..+++.++.+.
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 8753 355667777777764 34678888888888875 47888888888888888899999999988888763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 038914 505 EPNFVIFNTLMLGFIRNNETSK-VIELLHRMDM 536 (570)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 536 (570)
..++.+...++.+-...|...+ ..+.+.++..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3467777666666566665543 4456666664
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.2e-06 Score=71.70 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=125.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
..+...+...|+-+....+....... .+.+.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56666677778877777777665433 25566677778888888999999999999988776 78889999999999999
Q ss_pred CCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 452 GRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL 530 (570)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (570)
|+++.|..-|.+..+. .| +....++++..+.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999988884 44 45678888888888999999999998888753 22666777788888889999999887
Q ss_pred HHHHH
Q 038914 531 LHRMD 535 (570)
Q Consensus 531 ~~~~~ 535 (570)
..+-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76654
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00015 Score=67.33 Aligned_cols=407 Identities=11% Similarity=0.079 Sum_probs=237.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 228 (570)
+-|..+|+.||+-+... -.+++.+.++++... .+.....|..-+..-...++++..+.+|.+.+..-. +.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hH
Confidence 45788999999866544 899999999999875 355678899999999999999999999999877533 56
Q ss_pred HHHHHHHHHHHh-cCCHHH----HHHHHHHHH-HCCCCCC-hhhHHHHHH---------HHHhcCChhHHHHHHHHHHHC
Q 038914 229 VTYTSLICGFCY-ANDWNE----AKHLFIEMM-DQGVQPN-VVTFTVIMD---------ELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 229 ~~~~~l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~ 292 (570)
..|...+..-.+ .|+... ..+.|+-.. +.|..+- ...|+..+. -|..+.+.+...+++++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 666665543222 232222 222333332 2333222 122333332 233344566677788887764
Q ss_pred CCCCCHhhHH------HHHHH-------HHhcCCHHHHHHHHHHHHhC--CCCCCH---------------hhHHHHHHH
Q 038914 293 GVKPDTSTYN------TLIDG-------YCLTGKIDRARELFVSMESN--GCMHDV---------------VSYSILING 342 (570)
Q Consensus 293 ~~~~~~~~~~------~l~~~-------~~~~~~~~~a~~~~~~~~~~--~~~~~~---------------~~~~~l~~~ 342 (570)
-+.-=...|+ .-++. --+...+..|.++++++... |..... ..|-.+|.-
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 2221111221 11111 11233466777777776431 211111 113333322
Q ss_pred HHhcCCH---------HHHHHHHHHHHh-CCCCCChhhH-H----HHHHHHhhcCC-------HHHHHHHHHHHHhCCCC
Q 038914 343 YCKTKDV---------EEGLNLYRKMLS-KGIRPTVVTY-H----TLFLGLFEVHQ-------VEHALKLFDEMRRNHVA 400 (570)
Q Consensus 343 ~~~~~~~---------~~A~~~~~~~~~-~~~~~~~~~~-~----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~ 400 (570)
- +.+-. ....-.+++... .+..|+..-. . .....+...|+ .+++..+++.....-..
T Consensus 247 E-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 247 E-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred H-hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1 11111 112222222221 2333332210 1 11112223333 34556666655543222
Q ss_pred cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-ChhhH
Q 038914 401 ANTYIYTTFIDGLCKNG---YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA-DVVTY 476 (570)
Q Consensus 401 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 476 (570)
.+..++..+...-...- ..+....+++++.......-..+|..++....+..-+..|..+|.++.+.+..+ ++.+.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 33334443333221111 356667777776654323334567888888888889999999999999876655 55666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 038914 477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD--ASTLSIVVDLLV 554 (570)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 554 (570)
++++.-+| +++..-|.++|+--+++ ...+...-...+.-+...++-..+..+|++.+..++.|+ ..+|..+++-=.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 77776554 67889999999887764 233344446777888899999999999999998777766 579999999988
Q ss_pred ccCcccccchhhhh
Q 038914 555 KNEISLNSIPQFKR 568 (570)
Q Consensus 555 ~~g~~~~a~~~~~~ 568 (570)
.-|++..+++.-+|
T Consensus 484 ~vGdL~si~~lekR 497 (656)
T KOG1914|consen 484 NVGDLNSILKLEKR 497 (656)
T ss_pred hcccHHHHHHHHHH
Confidence 88988877766544
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=2.1e-06 Score=72.37 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL-CNDGQ--MDKA 492 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 492 (570)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555566555554 5566666666666666666666666666666642 22445555555543 44454 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
.+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666642 224555566666666666666666666666654
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=2.4e-06 Score=71.51 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
|..+ ..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|...|+.++-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 666777888898888888887765433 5677777788999999999999999999998863 678899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914 482 GLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 560 (570)
+|.+.|++++|..-|.+..+. .| +...++.+...+.-.|+.+.|..++......+ .-|..+-..+.-+....|+.+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 999999999999999999995 44 56677889999999999999999999998654 447788888888999999998
Q ss_pred ccchh
Q 038914 561 NSIPQ 565 (570)
Q Consensus 561 ~a~~~ 565 (570)
+|..+
T Consensus 220 ~A~~i 224 (257)
T COG5010 220 EAEDI 224 (257)
T ss_pred HHHhh
Confidence 77654
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=2.5e-06 Score=75.21 Aligned_cols=189 Identities=11% Similarity=0.010 Sum_probs=130.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV 152 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (570)
.....+..++..+...|++++|+..|++++.. .|+..... .++...|..+...|++++|+..++++++..+. +.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~---~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~ 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAE---QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HP 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CC
Confidence 56678899999999999999999999999887 44432111 11122223445567999999999999987432 22
Q ss_pred c---hHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 153 F---TYNTLINGLCRT--------GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 153 ~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
. ++..+..++.+. |++++|.+.|+++.... +.+...+..+..... ... ..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~~------~~-- 165 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LRN------RL-- 165 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HHH------HH--
Confidence 2 455566666654 78999999999999865 222333322221111 000 00
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 222 ENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV--QPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
......+...+...|++.+|+..++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01123566778999999999999999988632 123568889999999999999999999988765
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=5.1e-06 Score=83.26 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD 210 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (570)
|++++|..+++.+.+.. +.+..+...++.++.+.+++++|+..+++....+ +.+......+..++.+.|+++
T Consensus 100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhcchH
Confidence 46666666666666552 1133445555566666666666666666666543 334455555566666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+|..+|+++... .+-+..++..+...+...|+.++|...|+...+.
T Consensus 172 ~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 172 QADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666653 2224555666666666666666666666665554
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=2.6e-05 Score=79.15 Aligned_cols=171 Identities=9% Similarity=0.093 Sum_probs=112.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
+.+..+|..|+..+...+++++|.++.+..++. .|+...+....... +...+++.++.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh------------
Confidence 478889999999999999999999999988877 56654433333221 1122333333222
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
.++.......++.-..-+...+... ..+..++..++.+|-+.|+.++|.++++++++.+ +-|+.+.
T Consensus 88 -----~~l~~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aL 153 (906)
T PRK14720 88 -----NLIDSFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIV 153 (906)
T ss_pred -----hhhhhcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHH
Confidence 3444444445554444444444442 2345577778888888888888888888888876 3477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
+.+...|... ++++|..++.+.+.. +...+++..+..++.++...
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888888 888888887776653 44555666666666666654
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.4e-05 Score=81.00 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=116.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+..++..|+..+...+++++|.++.+...+.. +.....|..++..+.+.++..++.-+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLI---------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhh----------
Confidence 45567788888888888888888888777653 23344555555566666665555444 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL 310 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (570)
.......++.-+..++..+... .-+..++..++.+|-+.|+.++|..+++++++.+ +-|+.+.+.+...|..
T Consensus 91 -----~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 91 -----DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred -----hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 2222233333333333333332 1123344555555555555555555555555554 3345555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhhcCCH
Q 038914 311 TGKIDRARELFVSMESNGCMHDVVSYSILING-----YCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFEVHQV 384 (570)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 384 (570)
. ++++|.+++.++...-+ +..-|+.+... .....+++.-..+.+++... |..--..++..+...|-..+++
T Consensus 163 ~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred h-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 5 55555555555443200 00001111100 00111222222333333322 2222233444555666677777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914 385 EHALKLFDEMRRNHVAANTYIYTTFIDGLC 414 (570)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (570)
++++.+++.+.+.. +.|......++.+|.
T Consensus 240 ~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 78888887777764 335555556666554
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.8e-05 Score=65.19 Aligned_cols=151 Identities=17% Similarity=0.072 Sum_probs=85.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----
Q 038914 340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK---- 415 (570)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 415 (570)
...|+..+++++|++...... +......=...+.+..+.+-|.+.++.|.+- .+..+++.+..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 345566666666666655411 2333333344455566666666666666542 244455555555443
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH-HHH
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK-AHG 494 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~ 494 (570)
.+....|.-+|+++.+.. +|+..+.+..+.++...|++++|..+++++.... ..++.+...++.+-...|...+ ..+
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345666777777776533 6666777777777777777777777777776653 3345555555555555554433 334
Q ss_pred HHHHHHH
Q 038914 495 LFLDMEA 501 (570)
Q Consensus 495 ~~~~~~~ 501 (570)
.+.++..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4444444
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=2.9e-06 Score=67.53 Aligned_cols=108 Identities=8% Similarity=-0.045 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 217 (570)
.++++.++. .|+ .+..+...+.+.|++++|...|+.+...+ +.+...|..+..++...|++++|...|+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455555554 233 34456677778888888888888887765 5567788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 218 KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+....+ +.+...+..+..++...|++++|+..|+..++.
T Consensus 83 ~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 83 HALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888764 346777888888888888888888888887775
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=4.3e-06 Score=66.52 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN 485 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (570)
+......+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.... +.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555666677777777777666654 4566666666666777777777777777766642 3345666666667777
Q ss_pred cCChhHHHHHHHHHHH
Q 038914 486 DGQMDKAHGLFLDMEA 501 (570)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (570)
.|++++|+..|+..++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777666
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.6e-05 Score=63.46 Aligned_cols=188 Identities=10% Similarity=0.071 Sum_probs=130.0
Q ss_pred hcCCHHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCH
Q 038914 310 LTGKIDRARELFVSMESN---G-CMHDVV-SYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQV 384 (570)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (570)
...+.++..+++..+... | ..++.. .|..++-+....|+.+.|..+++.+... ++.+......-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345678888888777542 2 233433 3455566667788888888888888776 332333333333345567888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914 385 EHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSL 464 (570)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (570)
++|+++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999998888765 556666666666667778777888777776654 3678888988989999999999999888888
Q ss_pred hhCCCCC-ChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 038914 465 PRVGLMA-DVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAK 502 (570)
Q Consensus 465 ~~~~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 502 (570)
+-. .| ++..|..+...+...| +..-|.++|.+.++.
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 764 44 4445556666655444 666788888888874
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.62 E-value=0.00077 Score=66.69 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=131.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
..+.|+.++|...++..-...+ .+..+...+-.+|.+.|+.++|..+|+++... .|+......++.+|.+-+ .|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~-~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK-SYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH-HHH
Confidence 4578999999988887766655 57788889999999999999999999999987 677777777788877753 111
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG-H---------TIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
+ +-..|+++|.. ++.+...+=+++....+.- . ..-|..+++.+.+.++. -.+..-...
T Consensus 128 ~--qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk-----~~s~aE~~L 195 (932)
T KOG2053|consen 128 K--QQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK-----IESEAEIIL 195 (932)
T ss_pred H--HHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc-----cchHHHHHH
Confidence 1 12234444442 2334454444555554321 1 23466777777765421 112223333
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914 199 IIDGLCKKGFVDKAKELF-LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ 260 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (570)
....+...|.+++|.+++ ....+.-..-+...-+.-+..+...++|.+..++-.++...|..
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 445566788999999999 44444433445555566778888999999999999999887643
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=7.4e-05 Score=62.31 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=123.0
Q ss_pred CChHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914 89 KHYDTVLSLFKRLNST---G-LFPDLY-AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 163 (570)
Q Consensus 89 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (570)
.+.++.++++.+++.. | ..++.. .+..++-+... .|+.+.|...+.++...- +.+..+-..-...+-
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-------~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-------TGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence 4555566666655433 1 222322 23333333333 358888888888877662 323333333344455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038914 164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAND 243 (570)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (570)
..|++++|+++++.+++.+ +.|..++..-+.+....|+.-+|++-+....+. +.-|...|.-+...|...|+
T Consensus 98 a~~~~~~A~e~y~~lL~dd-------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HhhchhhHHHHHHHHhccC-------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence 6788888888888888876 566777777777777788888888888777775 55688888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 038914 244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG---KMDGASRLLELMILRG 293 (570)
Q Consensus 244 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 293 (570)
+++|.-.+++++-.. +.+...+..+...+.-.| +.+.+.++|.+.++..
T Consensus 170 f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 888888888887742 223444445555544444 4556778888887763
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=5e-06 Score=65.96 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN 521 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (570)
..++..+...|++++|...++.+...+ +.+...+..++.++...|++++|..++++..+.+ +.+...+..+..++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 333344444444444444444443321 2233344444444444444444444444444321 22233334444444444
Q ss_pred CCHHHHHHHHHHHH
Q 038914 522 NETSKVIELLHRMD 535 (570)
Q Consensus 522 g~~~~a~~~~~~~~ 535 (570)
|++++|...+++..
T Consensus 99 g~~~~A~~~~~~al 112 (135)
T TIGR02552 99 GEPESALKALDLAI 112 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=5.3e-06 Score=65.78 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914 390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL 469 (570)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (570)
.++.+.... +.+......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 455665543 3345667778888999999999999999998876 6688899999999999999999999999998863
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038914 470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTL 514 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (570)
+.+...+..+..++...|++++|...|++..+. .|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 446678888999999999999999999999984 5665554433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2.7e-05 Score=71.34 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=96.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD- 151 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 151 (570)
....+++..+......|++++|+..++.+++. .|+...|..+... .+...++..+|.+.+++++.. .|+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~------i~~~~nk~~~A~e~~~kal~l--~P~~ 373 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGD------ILLEANKAKEAIERLKKALAL--DPNS 373 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHH------HHHHcCChHHHHHHHHHHHhc--CCCc
Confidence 34456666666667777777777777777766 5666555544432 233345777777777777765 333
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
......+..++.+.|++.+|+.+++.....+ +.|...|..|..+|...|+..++.....+.
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------ 434 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEG------------ 434 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------
Confidence 4445566777777777777777777777664 556777777777777777766665554433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+...|+++.|+..+....+.
T Consensus 435 ------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------HHhCCCHHHHHHHHHHHHHh
Confidence 44566777777666666554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=9.8e-05 Score=67.76 Aligned_cols=162 Identities=18% Similarity=0.142 Sum_probs=120.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK 450 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (570)
.......+...|+++.|+..+..+.+.. +.|...+......+...++.++|.+.++++.... +........+..++.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 3444455667889999999999888763 5677777788888999999999999999988774 3336667788889999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL 530 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (570)
.|++.+|.++++..... .+-|+..|..|.++|...|+..++.....+ .+...|++++|+..
T Consensus 387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHH
Confidence 99999999999988775 366778899999999999988777665433 45567888888888
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHH
Q 038914 531 LHRMDMRN--VMPDASTLSIVVDLL 553 (570)
Q Consensus 531 ~~~~~~~~--~~p~~~~~~~l~~~~ 553 (570)
+....+.. ..|+..-+...++..
T Consensus 448 l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 448 LMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHH
Confidence 88887542 123333344444443
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.8e-05 Score=66.08 Aligned_cols=268 Identities=14% Similarity=0.056 Sum_probs=163.0
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
+.....|....+..+|.+|+..+..++...| .+...|..-+..+...|++++|.--.+..++. .|+..- .
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k------~ 119 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSK------G 119 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccc------c
Confidence 5566678888889999999999999999999 77888888899999999999998888777655 222110 1
Q ss_pred HHhcCCcchhhCCHHHHHHHH---------------HHHHhcCC-CCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhCC
Q 038914 120 FLQNGSSLCVESRIMEAAALF---------------TKLRVFGC-EPDVFTYNTLI-NGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~---------------~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
..+.+..+...++..+|.+.+ +.+..... +|....+..+- .++.-.|++++|.+.--.+++.+
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 111111111122333333222 22222211 23334444432 34456788888888888887765
Q ss_pred CCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHHHHHH
Q 038914 183 GEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY-------------TSLICGFCYANDWNEAKH 249 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~ 249 (570)
..+......-..++...++.+.|...|++.+..+ |+...- ..-.+-..+.|.+..|.+
T Consensus 200 -------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 200 -------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred -------cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 3344444444455667788888888888887653 332211 112233456677777777
Q ss_pred HHHHHHHCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 250 LFIEMMDQG---VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMES 326 (570)
Q Consensus 250 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (570)
.|.+.+... ..++...|.....+..+.|+.++|+.-.+.....+ ..-+..+..-..++...+++++|.+-+++..+
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777776542 34445556666666677777777777777766542 00112333334556666777777777777665
Q ss_pred C
Q 038914 327 N 327 (570)
Q Consensus 327 ~ 327 (570)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 4
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.5e-07 Score=51.87 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
|+.||..+|+.++.+|++.|+.++|.+++++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.3e-07 Score=52.03 Aligned_cols=32 Identities=50% Similarity=0.888 Sum_probs=19.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.6e-06 Score=71.94 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=91.6
Q ss_pred HHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038914 35 ETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN 114 (570)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 114 (570)
.....+.++..|....+.++|.+|+..|..+++.+| .|..-|..-+.+|.+.|+++.|++-.+.++.. .|..
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~y---- 148 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHY---- 148 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHH----
Confidence 445567778888888999999999999999999998 88888999999999999999999999999976 3322
Q ss_pred HHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914 115 ILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN 160 (570)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 160 (570)
..+|.++|..|...|++++|++.|.+.++. .|+..+|-.=+.
T Consensus 149 --skay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 149 --SKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred --HHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 255666666666678999999999998886 667666554443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=6.1e-05 Score=60.25 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh--hhHHHHHHHHHhcCChh
Q 038914 416 NGYIVKAVELFRTLRILKYELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV--VTYNIMIHGLCNDGQMD 490 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 490 (570)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++. .....+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 222 122223344455555555555555555554311111 12333455555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 491 KAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHR 533 (570)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 533 (570)
+|+..++..... ......+.....++.+.|++++|+..|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555442221 11233344445555555555555555554
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=0.0029 Score=60.86 Aligned_cols=211 Identities=13% Similarity=0.061 Sum_probs=119.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ---NGSSLCVESRIMEAAALFTKLRVFGCE 149 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (570)
|.+..|..++....+.-.++-|...|-+.... +.......+-..+++ ....-..-|++++|.++|-.+-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 67889999998777777777777776554432 222111111111110 0111222478888888887765542
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV 229 (570)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 229 (570)
..|..+.+.||+-...++++.--.... -..-..+|+.+...+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 456667778888777766654322110 1112456777777777777788887777654321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038914 230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC 309 (570)
Q Consensus 230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (570)
...+.++.+..++++-..+-..+ +-+....-.+..++...|.-++|.+.+-+. + .|. ..+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHH
Confidence 23445555555555544433332 335555666777777777777776665332 1 111 2345566
Q ss_pred hcCCHHHHHHHHHH
Q 038914 310 LTGKIDRARELFVS 323 (570)
Q Consensus 310 ~~~~~~~a~~~~~~ 323 (570)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665543
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=5e-05 Score=70.35 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=55.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038914 374 LFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGR 453 (570)
Q Consensus 374 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 453 (570)
++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++..... +.+...+..-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3333444455555555555555432 22 22234444444455555555555544332 3344444444444555555
Q ss_pred HHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 454 LEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
++.|+.+.+++.+. .|+. .+|..|+.+|...|+++.|+-.++.+
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555542 3333 34555555555555555555444433
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=2.8e-05 Score=62.20 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 51 TTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
..++.+.+...++.+....|.. ....+...++..+...|++++|...|+.+.... |+....... ..+++..+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a---~l~LA~~~~~ 97 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLA---RLRLARILLQ 97 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHH---HHHHHHHHHH
Confidence 4678999999999999988732 224566678889999999999999999999985 443221111 1112234556
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 178 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 178 (570)
.|++++|+..++..... ......+...+.++.+.|++++|...|+..
T Consensus 98 ~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred cCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78999999999875433 234456777889999999999999999875
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=0.00013 Score=67.59 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
...++..+...++++.|+++|+++.+.. |+ ....++..+...++..+|.+++.+..+.. +.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666778888888888888762 33 44556677777777888888887777653 4566677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
.++++.|+.+.+++.... |-+..+|..|+.+|...|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888764 55667888888888888999888888887653
No 146
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.20 E-value=0.0047 Score=56.53 Aligned_cols=464 Identities=15% Similarity=0.175 Sum_probs=238.2
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCH---HhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPV---TSF-NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN 118 (570)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 118 (570)
...|..+.+.+++.+|.++|.++.+.....+.. ..+ +.++.++. .++.+.-........+. .| ...|..++.
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~ 85 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFK 85 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHH
Confidence 346777888999999999999987654311111 122 34445544 45556555555555554 34 233444444
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhc--CCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVF--GCEP------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 184 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (570)
+... .+++.+.+|+..+...... +..+ +...=+..+..+...|++.++..+++++...--.
T Consensus 86 ~L~~-----Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 86 ALVA-----YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHH-----HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 3322 2467999999988876654 2111 1112233456677889999999988887754300
Q ss_pred CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038914 185 IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP 261 (570)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 261 (570)
.-..-+..+|+.++-.+.+. .|-++++. ++-|+ |--++..|.+.=+ .++.-.-..+-|
T Consensus 161 --rE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~p 221 (549)
T PF07079_consen 161 --RECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIP 221 (549)
T ss_pred --hhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCc
Confidence 00225677888766655532 23333221 12222 2223333322211 111100011223
Q ss_pred ChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHh
Q 038914 262 NVVTFTVIMDELCKN--GKMDGASRLLELMILRGVKPDTS-TYNTLIDGYCLTGKIDRARELFVSMESNGCM----HDVV 334 (570)
Q Consensus 262 ~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 334 (570)
.......++....-. .+..--.++++.-...-+.|+.. +...+...+.. +.+++..+.+.+...... .-..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333332211 11222223333333333444433 22333333333 445555554444332111 1234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-------HHHh----hcCCHHHHHHHHHHHHhCCCCcCH
Q 038914 335 SYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF-------LGLF----EVHQVEHALKLFDEMRRNHVAANT 403 (570)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 403 (570)
++..++....+.++...|.+.+..+... .|+...-..++ ...+ ...+..+-+.+|+.....++ |.
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr 375 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR 375 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence 5677777778888888888887776654 23322211111 1111 11223344555565554432 22
Q ss_pred H-HHHHH---HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHhhhhCCCCC
Q 038914 404 Y-IYTTF---IDGLCKNGY-IVKAVELFRTLRILKYELNIVSYNCLI----DGLCK---HGRLEIAWELFSSLPRVGLMA 471 (570)
Q Consensus 404 ~-~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~ 471 (570)
. ....+ +.-+-+.|. -++|+++++.+.+.. +-|...-|.+. .+|.. ...+..-..+-+-+.+.|++|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1 11122 223334444 888999998887654 44544433332 22222 123333444444445567666
Q ss_pred Ch----hhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 472 DV----VTYNIMIHG--LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAST 545 (570)
Q Consensus 472 ~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 545 (570)
-. ..-|.|..+ +...|++.++.-.-.-+.+ +.|++.+|..+..+.....++++|..+++++ +|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence 33 233444433 4567899888877666666 7899999999988888899999999999876 456555
Q ss_pred HHH
Q 038914 546 LSI 548 (570)
Q Consensus 546 ~~~ 548 (570)
++.
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 543
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.16 E-value=3.9e-06 Score=57.03 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=55.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 117 (570)
+..|++++|+..|+.++..+| .+...+..++.++.+.|++++|.++++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 357899999999999999999 79999999999999999999999999999988 67755555444
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=0.0007 Score=59.14 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=47.8
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF 107 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 107 (570)
....|++++|+..|+.++...|..+-. .+...++.++.+.+++++|+..|++.++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 455789999999999999998833221 23467889999999999999999999998443
No 149
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.13 E-value=5.7e-06 Score=73.54 Aligned_cols=275 Identities=12% Similarity=0.018 Sum_probs=167.4
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHH--hC--CCCCCHhhHHHHHH
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLN--ST--GLFPDLYAYNILIN 118 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~~~~~l~ 118 (570)
-|..+++.|+....+.+|+.+++.+-.... ...|..|+.+|.-.++|++|+++..-=+ .. |-.... ..
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE------AK 96 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE------AK 96 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc------cc
Confidence 578889999999999999999988652111 2346778888888889999887643211 11 111111 13
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCC--------------------hhHHHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVF----GCE-PDVFTYNTLINGLCRTGH--------------------TIVALN 173 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 173 (570)
++..+|..+...|.+++|+..-.+-+.. |-. ....++..+...|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 4556667777788999998776554322 211 123455557777765442 223444
Q ss_pred HHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 038914 174 LFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD----ENIN-PNAVTYTSLICGFCYANDWNEAK 248 (570)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 248 (570)
.|.+-++.....|. .-.-...|..|...|.-.|+++.|+...+.-+. -|-+ .....+..|..+++-.|+++.|.
T Consensus 177 fy~eNL~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 177 FYMENLELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 44433221100000 011123566666677777888888877654322 2211 12356777888888889999998
Q ss_pred HHHHHHHHC----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914 249 HLFIEMMDQ----G-VQPNVVTFTVIMDELCKNGKMDGASRLLELMILR-----GVKPDTSTYNTLIDGYCLTGKIDRAR 318 (570)
Q Consensus 249 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~ 318 (570)
+.|+..... | -........+|...|.-..++++|+.++.+-+.. +..-....+..|..+|...|..++|+
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 888765432 2 1223455667788888888888888877654432 11223456777888888888888888
Q ss_pred HHHHHHHh
Q 038914 319 ELFVSMES 326 (570)
Q Consensus 319 ~~~~~~~~ 326 (570)
...+.-++
T Consensus 336 ~fae~hl~ 343 (639)
T KOG1130|consen 336 YFAELHLR 343 (639)
T ss_pred HHHHHHHH
Confidence 77665443
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=0.00026 Score=63.96 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=47.3
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----h-hhHH
Q 038914 200 IDGLCKK-GFVDKAKELFLKMKDE----NIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-----V-VTFT 267 (570)
Q Consensus 200 ~~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~ 267 (570)
...|... |++++|++.|++..+. +.+ .-..++..++..+.+.|++++|..+|+++.......+ . ..+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 6677777766665432 100 0123445566667777777777777777665422111 1 1122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 268 VIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 268 ~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
..+-++...|++..|.+.+++....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3334555667777777777776544
No 151
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.08 E-value=0.0013 Score=52.21 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI 133 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 133 (570)
|++.+..-..+..... |.+.....|+.++.+.|++.+|...|++...--.--|......+-.+.... +++
T Consensus 71 dP~R~~Rea~~~~~~A---pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-------~~~ 140 (251)
T COG4700 71 DPERHLREATEELAIA---PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-------QEF 140 (251)
T ss_pred ChhHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-------ccH
Confidence 4444444444444333 456667788888889999999999999888654444555555555555444 488
Q ss_pred HHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHH
Q 038914 134 MEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKA 212 (570)
Q Consensus 134 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 212 (570)
..|...++++-+.... .++.....+.+.+...|.+.+|...|+.+... -|+...-......+.++|+.+++
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--------ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--------YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--------CCCHHHHHHHHHHHHHhcchhHH
Confidence 8888888887765311 12334556677788888888888888888774 46666666666777777776666
Q ss_pred HHHHHHH
Q 038914 213 KELFLKM 219 (570)
Q Consensus 213 ~~~~~~~ 219 (570)
..-+..+
T Consensus 213 ~aq~~~v 219 (251)
T COG4700 213 NAQYVAV 219 (251)
T ss_pred HHHHHHH
Confidence 5444333
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.07 E-value=0.0088 Score=54.72 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-HHHH
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILK-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-NIMI 480 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 480 (570)
..+|...+....+..-++.|..+|-++.+.+ ..+++.++++++.-+ ..|+...|.++|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777778889999999988877 567778888887655 467888999999876664 3555444 4456
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
.-+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+-++|... -|-..+.....+.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6667788889999999876654 3333 568888888888889999888888888753 35444444444443
No 153
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.06 E-value=5.9e-05 Score=67.34 Aligned_cols=275 Identities=15% Similarity=0.085 Sum_probs=171.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH--hc--CCC-CCcchHH
Q 038914 82 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLR--VF--GCE-PDVFTYN 156 (570)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~--~~~-~~~~~~~ 156 (570)
+.-+++.|+....+.+|+.++..|. ..+..+-..|+.+|..|...++|++|+++...=+ .+ |-+ -...+..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3467899999999999999998763 3455566778889999999999999999765322 11 111 1233445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038914 157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF--------------------VDKAKELF 216 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 216 (570)
.|...+--.|.+++|+-...+-+....++|. ......++..|..+|...|+ ++.|.++|
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgD-rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGD-RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhH-HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 5666776778888887665554432211111 11224556667777766554 23344444
Q ss_pred HHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 217 LKMKD----ENI-NPNAVTYTSLICGFCYANDWNEAKHLFIEMMD----QGVQ-PNVVTFTVIMDELCKNGKMDGASRLL 286 (570)
Q Consensus 217 ~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 286 (570)
.+=++ .|- -..-.+|..|...|.-.|+++.|+...+.-+. .|.. .....+..+..+++-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 33211 110 01234566677777778889988877654332 2211 12345667888888889999999888
Q ss_pred HHHHHC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038914 287 ELMILR----G-VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN-----GCMHDVVSYSILINGYCKTKDVEEGLNLY 356 (570)
Q Consensus 287 ~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 356 (570)
+..... | -.........|...|.-..++++|+..+.+-+.. +..-....+-.+..+|...|..++|+...
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 765432 2 1223345667778888888888888877653221 01124456777888888888888888776
Q ss_pred HHHHh
Q 038914 357 RKMLS 361 (570)
Q Consensus 357 ~~~~~ 361 (570)
...+.
T Consensus 339 e~hl~ 343 (639)
T KOG1130|consen 339 ELHLR 343 (639)
T ss_pred HHHHH
Confidence 65554
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0037 Score=56.39 Aligned_cols=262 Identities=12% Similarity=0.027 Sum_probs=141.4
Q ss_pred CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914 124 GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL 203 (570)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (570)
|..+.++.++.+|+..+...++..+. ++..|..-...+...|++++|.--.+...+.. +.....+.....++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-------d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-------DGFSKGQLREGQCH 127 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-------CCccccccchhhhh
Confidence 34455567899999999999887533 46667777778888899999888777766643 11233444444555
Q ss_pred HhcCCHHHHHHHHHHH---------------HhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038914 204 CKKGFVDKAKELFLKM---------------KDENI-NPNAVTYTSL-ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF 266 (570)
Q Consensus 204 ~~~g~~~~a~~~~~~~---------------~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 266 (570)
...+...+|.+.++.- ..... +|....|..+ ..++...|++++|..+--.+++... .+....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHH
Confidence 5555555555444421 11111 1222333332 2455666777777777666666532 133333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-------------HHHHHHHHhcCCHHHHHHHHHHHHhCC---CC
Q 038914 267 TVIMDELCKNGKMDGASRLLELMILRGVKPDTSTY-------------NTLIDGYCLTGKIDRARELFVSMESNG---CM 330 (570)
Q Consensus 267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~ 330 (570)
..-..++.-.++.+.+...|++.+.. .|+...- ..-.+-..+.|.+..|.+.+.+.+..+ ..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 33334445566677777777777654 2332211 111223445566666666666655442 22
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914 331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN 397 (570)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (570)
++...|.....+..+.|+..+|+.--+...+.+.. -...+..-..++...++|++|.+-++...+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555666666666655555543100 1122333334445556666666666555543
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.05 E-value=3e-06 Score=56.90 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD 109 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 109 (570)
.+..|++++|+..|+.+++..| .+..+|..++.++...|++++|+..|+++++. .|+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 4567899999999999999998 79999999999999999999999999999876 454
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=8.7e-06 Score=57.96 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
.|+++.|+.+|+++++..|..++...+..++.++.+.|++++|+.++++ .+. .+.......++. ..+...|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a------~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLA------RCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHH------HHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHH------HHHHHhC
Confidence 5799999999999999988322566677899999999999999999998 333 333322222222 2234457
Q ss_pred CHHHHHHHHHHH
Q 038914 132 RIMEAAALFTKL 143 (570)
Q Consensus 132 ~~~~A~~~~~~~ 143 (570)
++++|+..|++.
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999863
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00049 Score=53.88 Aligned_cols=96 Identities=8% Similarity=-0.086 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS 233 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (570)
....+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|++.|......++ -|+..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence 33345555667777777777777777654 44566667777777777777777777777766653 36667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+..++...|+.+.|.+.|+..+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777766553
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.0001 Score=63.32 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038914 376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLE 455 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (570)
.-+.+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 33556677777777777777653 4456666666677777777777777776666554 344566777777777777777
Q ss_pred HHHHHHHhhhhCCCCCChhhHH
Q 038914 456 IAWELFSSLPRVGLMADVVTYN 477 (570)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~ 477 (570)
+|.+.|++.++ +.|+..+|-
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 77777777766 456655544
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0055 Score=53.63 Aligned_cols=187 Identities=11% Similarity=0.119 Sum_probs=100.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV 152 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (570)
.+...+...+..+...|++++|++.|+++... .|+...... +....|..+.+.+++++|...+++.++..+....
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~---a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQ---VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 35556667777888899999999999999887 444432211 1122223445567999999999998887432222
Q ss_pred chHHHHHHHHHh--cC---------------C---hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHH
Q 038914 153 FTYNTLINGLCR--TG---------------H---TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKA 212 (570)
Q Consensus 153 ~~~~~l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 212 (570)
..+...+.+.+. .+ | ..+|+..|+.+.+.. |+ ..-..+|
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~-------------S~ya~~A 163 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PN-------------SQYTTDA 163 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cC-------------ChhHHHH
Confidence 233333333321 11 1 123444455554432 22 1223333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 213 KELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ--GVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
...+..+... =...-..+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|..+...+
T Consensus 164 ~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 164 TKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3333333221 0111123455566677777777767666654 11223344555666666777777766665544
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00069 Score=53.08 Aligned_cols=94 Identities=10% Similarity=-0.046 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
..+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|+..|....... +.|+..+-.++.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 344444556667777777776666554 4455556666666666677777777776666643 23455666666666667
Q ss_pred CChhHHHHHHHHHHHC
Q 038914 487 GQMDKAHGLFLDMEAK 502 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~ 502 (570)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777776666666553
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00022 Score=66.55 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914 410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM 489 (570)
Q Consensus 410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (570)
...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776655 4556666667777777777777777777776642 22445666677777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHH
Q 038914 490 DKAHGLFLDMEAKGLEPNFVI 510 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~ 510 (570)
++|+..|+++++ +.|+...
T Consensus 87 ~eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 777777777776 3444333
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00049 Score=59.68 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhC
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 131 (570)
..++....-++.-++.+| .|...|..|+.+|..+|++..|...|.++.+. .|+. ..+..+-.++.... -..
T Consensus 136 ~~~~~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a----~~~ 207 (287)
T COG4235 136 QEMEALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQA----GQQ 207 (287)
T ss_pred ccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc----CCc
Confidence 346777788888889999 89999999999999999999999999999988 4443 33333333332221 135
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
...++..+|++++..+ +.|+.+...|...+.+.|++.+|...++.|.+..
T Consensus 208 ~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 208 MTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7789999999999875 3467788888899999999999999999999975
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.8e-05 Score=45.15 Aligned_cols=33 Identities=45% Similarity=0.961 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914 475 TYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507 (570)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (570)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.021 Score=55.27 Aligned_cols=204 Identities=12% Similarity=0.061 Sum_probs=128.4
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH----------HHHHHhcCCHHHHHHHHHH
Q 038914 149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI----------IDGLCKKGFVDKAKELFLK 218 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~ 218 (570)
.|.+..|..+.....+.-.++.|+..|-+...-. .......| ...-.--|++++|+++|-.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 5778889988888777777888888776654321 11111111 1222335889999999987
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914 219 MKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD 297 (570)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 297 (570)
+-.++ ..+..+.+.|+|-.+.++++.--.. ....-..+++.+...++....|++|.+.|...-..
T Consensus 760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----- 825 (1189)
T KOG2041|consen 760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----- 825 (1189)
T ss_pred cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence 76652 2456677888888777776532110 00112356788888888888899998888764321
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG 377 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (570)
...+.++.+..++++-+.+.+.+. .+....-.+..++.+.|.-++|.+.+-+-.. | ...+..
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t 887 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT 887 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence 234666666666666655554443 3555667777888888888888777654321 1 234556
Q ss_pred HhhcCCHHHHHHHHHH
Q 038914 378 LFEVHQVEHALKLFDE 393 (570)
Q Consensus 378 ~~~~~~~~~a~~~~~~ 393 (570)
|...++|.+|.++-+.
T Consensus 888 Cv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677777777766554
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00025 Score=66.11 Aligned_cols=123 Identities=10% Similarity=0.047 Sum_probs=75.0
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914 364 IRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN--HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY 441 (570)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (570)
.+.+...+..++..+....+.+.+..++-..... ....-..+..++++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666666666666543 11122334456667777777777777777666666767777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
+.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555455555555444444443
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00033 Score=53.94 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFN 512 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 512 (570)
+..++..+...|++++|...|..+.+.. |+ ...+..++.++...|++++|...++.+... .|+ ..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence 3444555566666666666666665531 22 234445666666666666666666666553 122 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 513 TLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
.+..++...|++++|...++++.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5556666666666666666666644
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.9e-05 Score=44.67 Aligned_cols=32 Identities=34% Similarity=0.649 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914 475 TYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506 (570)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (570)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=9.7e-05 Score=68.86 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=74.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNG 124 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (570)
|...+..|++++|+..|+.+++.+| .+...|..++.++...|++++|+..+++++.. .|+ ...+..+-.++.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~--- 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACM--- 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHH---
Confidence 3444568899999999999999999 78899999999999999999999999999987 453 333333333443
Q ss_pred CcchhhCCHHHHHHHHHHHHhcC
Q 038914 125 SSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
..|++++|+..|++.+..+
T Consensus 82 ----~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 82 ----KLEEYQTAKAALEKGASLA 100 (356)
T ss_pred ----HhCCHHHHHHHHHHHHHhC
Confidence 4579999999999999873
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.93 E-value=2.3e-05 Score=55.80 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=55.6
Q ss_pred hCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 130 ESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
+|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.+++. .+.+ +.+......+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence 46888888888888876431 1334455578888888888888888887 3322 2234555566788888888
Q ss_pred HHHHHHHHHH
Q 038914 209 VDKAKELFLK 218 (570)
Q Consensus 209 ~~~a~~~~~~ 218 (570)
+++|+++|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888875
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00019 Score=52.63 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN 521 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (570)
..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334445555555666665555555431 2222445555555555566666666665555532 22334555555555566
Q ss_pred CCHHHHHHHHHHHH
Q 038914 522 NETSKVIELLHRMD 535 (570)
Q Consensus 522 g~~~~a~~~~~~~~ 535 (570)
|++++|...+++..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666665554
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00022 Score=52.28 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
+..++..+...|++++|+..++.+.+.. +.+...+..+..++...|++++|.+.++...... +.+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHH
Confidence 3445555566666666666666666543 2233555556666666666666666666665542 2233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 038914 235 ICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
...+...|++++|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 5666666666666666655544
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00051 Score=52.89 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYN 477 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~ 477 (570)
++...+..+...|++++|...+..+.... +.+ ...+..+..++...|+++.|...|+.+.... |+ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 34455566667777777777777776543 111 2345556777777777777777777776532 22 34566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 478 IMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
.++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777777764
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=5.9e-05 Score=68.05 Aligned_cols=179 Identities=10% Similarity=0.065 Sum_probs=109.6
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcC----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMR----PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI 115 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (570)
..+...|......|++++|...|.++.... ........|...+.++. ..++++|+..|+++...-. ....+..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~--~~G~~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYR--EAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH--HCT-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHH--hcCcHHH
Confidence 344444444445678999999998876431 10122234555555554 4499999999999876521 2222333
Q ss_pred HHHHHHhcCCcchhh-CCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914 116 LINCFLQNGSSLCVE-SRIMEAAALFTKLRVF----GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 189 (570)
Q Consensus 116 ~l~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 189 (570)
.-..+.+.|..+... |++++|++.|++..+. +.+. -..++..+...+.+.|++++|+++|+++.....+... .
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l-~ 191 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL-L 191 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-T
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-c
Confidence 445555555666667 8999999999998764 2111 1234667888899999999999999998875411100 1
Q ss_pred CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 190 KPDTV-TYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 190 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+.++. .+...+-++...|+...|...+++....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12222 3344555777789999999999998765
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.00067 Score=56.17 Aligned_cols=101 Identities=8% Similarity=-0.037 Sum_probs=55.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP 150 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (570)
.....+..++..+...|++++|+..|+++++....+.. ..+..+. ..+...|++++|...+++.+... +.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~~-p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMG-------IIYASNGEHDKALEYYHQALELN-PK 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 44455666666777777777777777777655322221 1222222 22333457777777777766652 22
Q ss_pred CcchHHHHHHHHHhcCC--------------hhHHHHHHHHHHhC
Q 038914 151 DVFTYNTLINGLCRTGH--------------TIVALNLFEEMANG 181 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~ 181 (570)
+...+..+..++...|+ +++|.+.++++...
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555566655554 35555566555543
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0016 Score=63.57 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=83.8
Q ss_pred CCCHHhHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch--hhCCHHHHHHHHHHHH
Q 038914 72 RPPVTSFNILFGCLAK--T---KHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC--VESRIMEAAALFTKLR 144 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~A~~~~~~~~ 144 (570)
+.+..+|...+++... . +....|+.+|+++++. .|+.......+..+......+. ...+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4788888877776433 3 3377999999999998 6765433332221111100011 1122344444444433
Q ss_pred hcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 145 VFG-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 145 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
... .+.+..++..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 321 12334556666555556677777777777777743 56677777777777777777777777777664
No 176
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=3.2e-05 Score=44.13 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDA 543 (570)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 543 (570)
+|+.++.+|.+.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999999973
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00039 Score=62.43 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK-NGYIVKAVELFRTLRILKYELNIVSYNCLIDGL 448 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (570)
+|..++...-+.+..+.|..+|.+..+.+ .....+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555556666666666665332 2233344444433223 34444466666665544 244555566666666
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 449 CKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
...++.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666553 22222 3555555555556666666666666555
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0093 Score=47.61 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=106.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
+..+..+.=|++....-..+-.. ..|++..-..|..++.+.|+..+|...|++...--+.-|......+.++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--------~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--------IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--------hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 33444444455544443333333 3577777778888888888888888888888775555677788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914 238 FCYANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDR 316 (570)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (570)
....+++..|...++++.+.... .++.....+.+.+...|.+..|+..|+..... -|+..........+.+.|+.++
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 88888888888888888775311 12344556677888888888888888888865 4555554455566667776666
Q ss_pred HHHHHHHH
Q 038914 317 ARELFVSM 324 (570)
Q Consensus 317 a~~~~~~~ 324 (570)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 65444433
No 179
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=4.1e-05 Score=43.26 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914 509 VIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP 541 (570)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 541 (570)
.+|+.++.+|.+.|+++.|..++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00051 Score=56.68 Aligned_cols=118 Identities=9% Similarity=-0.050 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI 133 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 133 (570)
++..+...+..+.+..+.......|..++..+...|++++|+..|++++.....+... ..++...|..+...|++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~-----~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR-----SYILYNIGLIHTSNGEH 88 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHHcCCH
Confidence 4566666676665555534456677888888889999999999999998763222111 11222333344456799
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHH-------hcCChhHHHHHHHH
Q 038914 134 MEAAALFTKLRVFGCEPDVFTYNTLINGLC-------RTGHTIVALNLFEE 177 (570)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 177 (570)
++|+..+++..... +....++..+..++. +.|+++.|+..+++
T Consensus 89 ~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 89 TKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999988763 223445666666666 66676655444443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.00054 Score=56.50 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLM 515 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 515 (570)
..+..++..+...|++++|...|++.......+ ...++..++.++...|++++|+..++++... .| ...++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 344555556666667777777666665532111 1235666666677777777777777666653 23 234444444
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 038914 516 LGFI-------RNNETSKVIELLHR 533 (570)
Q Consensus 516 ~~~~-------~~g~~~~a~~~~~~ 533 (570)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 66676655444444
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.79 E-value=0.00052 Score=51.84 Aligned_cols=99 Identities=19% Similarity=0.079 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC--Ccch
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP--DVFT 154 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 154 (570)
+.+.++.++-..|+.++|+.+|++++..|....... .++...|..+...|++++|+.++++.....+.+ +...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~-----~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRR-----RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 455677788889999999999999999876543221 222233445556679999999999888752111 1122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMAN 180 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 180 (570)
...+..++...|+.++|++++-....
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344567788999999999877654
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0024 Score=62.42 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
...|..+.......|++++|...+++++.. .|+...|..+...+...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555556666666666666663 35555666666666666666666666666653
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.78 E-value=0.0046 Score=52.59 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=104.3
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF 120 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (570)
+...|...+..|++++|...|+.+..+.|.. -...+...++.++.+.++++.|+...++.++..+......|...|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3345666678999999999999999988843 335577788889999999999999999999986655555666666665
Q ss_pred HhcCC---cchhhCCHHHHHHHHHHHHhcCCCCCcc------h------------HHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 121 LQNGS---SLCVESRIMEAAALFTKLRVFGCEPDVF------T------------YNTLINGLCRTGHTIVALNLFEEMA 179 (570)
Q Consensus 121 ~~~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~------------~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (570)
+..-. ....+....+|..-|..++.+ -||+. . =..+.+.|.+.|.+..|..-++.+.
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 54332 222233344444555555544 22221 1 0012234555666666666666666
Q ss_pred hCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 180 NGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMK 220 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 220 (570)
+..+. .+.....+..+..+|...|..++|...-.-+.
T Consensus 195 e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 195 ENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 54311 11112344455555666666665555544333
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.77 E-value=0.00043 Score=58.92 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=102.8
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ- 122 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 122 (570)
.|...+..|++.+|+..|+.+....|.. ....+...++.++.+.|+++.|+..+++.++..+......+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444556889999999999999987743 33567889999999999999999999999988433222222222222221
Q ss_pred --cCCc---chhhCCHHHHHHHHHHHHhcCCCCCcc-h-----------------HHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 123 --NGSS---LCVESRIMEAAALFTKLRVFGCEPDVF-T-----------------YNTLINGLCRTGHTIVALNLFEEMA 179 (570)
Q Consensus 123 --~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~-~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (570)
.... ...++...+|...|+.++..- |+.. + -..+...|.+.|.+..|...++.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111 334556778999999988762 3321 1 0113355778999999999999999
Q ss_pred hCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHH
Q 038914 180 NGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAK 213 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 213 (570)
+..+. .+....+...++.+|.+.|..+.+.
T Consensus 169 ~~yp~----t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 169 ENYPD----TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHSTT----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCC----CchHHHHHHHHHHHHHHhCChHHHH
Confidence 87521 1111345677888888888877543
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00064 Score=63.47 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh
Q 038914 398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK--YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT 475 (570)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 475 (570)
+.+.+...+..++..+....+.+.+..++.+..... ...-..+..++++.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345666777778888777788888888888877542 222345566889999999999999999999899999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN 521 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (570)
++.|+..+.+.|++..|.++...|..++.-.+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666666665555555544
No 187
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0018 Score=53.62 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG 482 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (570)
.+..+...+...|++++|...|+++......+. ...+..+..++...|++++|...+++..+.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 444555555566666666666666654321111 2445555566666666666666666665531 2233444555555
Q ss_pred HHhcCChhHHH
Q 038914 483 LCNDGQMDKAH 493 (570)
Q Consensus 483 ~~~~g~~~~A~ 493 (570)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.73 E-value=0.029 Score=50.58 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=101.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC-CHHHHHHHHHHHHhc----C----CCCCc----
Q 038914 86 AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES-RIMEAAALFTKLRVF----G----CEPDV---- 152 (570)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~----~----~~~~~---- 152 (570)
.++|+++.|..++.++.......++.....+-..|...|......+ ++++|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4678888888888888765434455566677777777787777778 999998888876653 1 11222
Q ss_pred -chHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 153 -FTYNTLINGLCRTGHTI---VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228 (570)
Q Consensus 153 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 228 (570)
.++..++.++...+..+ +|..+++.+.... +.....+..-+.++.+.++.+.+.+.+.+|... +.-..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-ccccc
Confidence 24566667777666543 4566666665543 223555656667777778888888888888775 22122
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 038914 229 VTYTSLICGF---CYANDWNEAKHLFIEMMDQGVQPN 262 (570)
Q Consensus 229 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 262 (570)
..+..++..+ .. .....+...+..++.....|.
T Consensus 156 ~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 156 SNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred chHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 3344433333 22 223445555555544333333
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=2.2e-05 Score=53.43 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=53.5
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNST 104 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 104 (570)
+...|......|++++|+..|.++++.+| .+..+|..++.++...| ++++|++.++++++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 33445555678899999999999999998 78999999999999999 799999999999875
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0034 Score=54.63 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=64.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHH
Q 038914 435 ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEPNFVIF 511 (570)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~ 511 (570)
|-|...|..|..+|...|+++.|..-|.+..+.. .++...+..+..++..+. ...++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5666777777777777777777777777776642 344555666666554332 4456677777777642 2245555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 512 NTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 56666777777777777777777754
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0019 Score=58.07 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE-VHQVEHALKLFDEMRRNHVAANTYIYTTFIDG 412 (570)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (570)
.+|..+++...+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ++.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998542 2244555555555334 56777799999988876 46677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914 413 LCKNGYIVKAVELFRTLRILKYELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI 480 (570)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 480 (570)
+...++.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 89999999999999998765 23222 47888888888889999999999888874 44433333333
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.005 Score=52.47 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=39.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
+...+...+..+...|++.+|++.|+++.... |++...... ....+..+.+.|++++|...+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A---~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQA---QLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHH---HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566677777888888888888888888763 332211111 111112334456788888888777765
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0048 Score=46.66 Aligned_cols=87 Identities=18% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHH
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLC 484 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 484 (570)
.++-..|+.++|+.+|++....+.... ...+..+..++...|++++|..++++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344445555555555555555443222 223344445555555555555555555442 122 111122233444
Q ss_pred hcCChhHHHHHHHHH
Q 038914 485 NDGQMDKAHGLFLDM 499 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~ 499 (570)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555554443
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.0012 Score=47.88 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHH
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKMKDENI-NPNAVTYTSLICGFCYAN--------DWNEAKHLFIEMMDQGVQPNVVTFT 267 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 267 (570)
...|..+...+++...-.+|+.++..|+ .|+..+|+.++...++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455556666778888888888887777 677888887777665543 2334556666666666666766666
Q ss_pred HHHHHHHh
Q 038914 268 VIMDELCK 275 (570)
Q Consensus 268 ~l~~~~~~ 275 (570)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
No 195
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.57 E-value=0.084 Score=50.71 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=69.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY 155 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 155 (570)
..|..++.---.....+.+...|..++.. .|-..-|-.-.+.+- .+.|..+.+.++|++.+.. ++.++..|
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E------~klg~~~~s~~Vfergv~a-ip~SvdlW 116 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYE------YKLGNAENSVKVFERGVQA-IPLSVDLW 116 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHh-hhhHHHHH
Confidence 34444443333333335555666666644 444333322222221 2235666777777766653 34445555
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 156 NTLINGLC-RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 156 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
......+. ..|+.+...+.|+.+....+. ---....|...+..-..++++.....+++++++.
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55444433 346666666666666654321 0112445666666666667777777777777664
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00039 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=21.6
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.+...|++++|...|+++++.. +-+...+..++.++...|++++|..+|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444431 11233344444444444444444444444433
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.066 Score=48.84 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
.+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... ..++..|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355556667778899888888876664 57888999999999999999988876543 23457888999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038914 484 CNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVK 555 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 555 (570)
...|+..+|..+..+ ++ +..-+..|.+.|++.+|.+..-+.. |...+..+.+.+..
T Consensus 248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 999999999988766 12 2445667889999999988766553 45555555554433
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00049 Score=47.34 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=53.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAY 113 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 113 (570)
+..++++.|+..++.++..+| .++..|...+.++.+.|++++|.+.|+++++. .|+....
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 457899999999999999999 78999999999999999999999999999988 4554443
No 199
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=0.00015 Score=39.85 Aligned_cols=26 Identities=38% Similarity=0.756 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|+.++.+|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.0019 Score=46.85 Aligned_cols=76 Identities=14% Similarity=0.382 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038914 480 IHGLCNDGQMDKAHGLFLDMEAKGL-EPNFVIFNTLMLGFIRNN--------ETSKVIELLHRMDMRNVMPDASTLSIVV 550 (570)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 550 (570)
+..|...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+.++|..++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444566666666666655555 555666655555443321 1224556666666666666666666666
Q ss_pred HHHHc
Q 038914 551 DLLVK 555 (570)
Q Consensus 551 ~~~~~ 555 (570)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.00057 Score=60.15 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 52 TITPNDALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
.|++++|+..|+..++..|..+ ...++..++.++...|++++|+..|+.+++. .|+....... +.+.|..+...
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA---l~klg~~~~~~ 230 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA---MFKVGVIMQDK 230 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH---HHHHHHHHHHc
Confidence 4678888888888888777221 1467778888888888888888888888766 3432221111 11112223334
Q ss_pred CCHHHHHHHHHHHHhc
Q 038914 131 SRIMEAAALFTKLRVF 146 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~ 146 (570)
|+.++|...|+++++.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6778888888777765
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00043 Score=46.97 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN-ETSKVIELLHRMD 535 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 535 (570)
.+|..++..+...|++++|+..|.+.++.. +.+...|..+..++...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444455555555555555544431 112334444444444444 3455555554444
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.47 E-value=0.077 Score=47.97 Aligned_cols=286 Identities=13% Similarity=0.063 Sum_probs=149.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHH
Q 038914 241 ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL--CKNGKMDGASRLLELMILRGVKPDTS--TYNTLIDGYCLTGKIDR 316 (570)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 316 (570)
.|+-..|.++-.+..+. +..|......++.+. .-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555554443322 222333333343332 2346666666666666642 1111 11222222335566666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHh---hcCCHHHHHHH
Q 038914 317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKG-IRPTVVT--YHTLFLGLF---EVHQVEHALKL 390 (570)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~ 390 (570)
|...-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 666666555442 2234556666667777777777777776655432 1222211 111111111 12334455554
Q ss_pred HHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-C
Q 038914 391 FDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-G 468 (570)
Q Consensus 391 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 468 (570)
-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.. |.+.++.. ..+.+.|+ .+..-++...+. .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHh
Confidence 4444443 33322 22234466778888888888888887764 44433322 23344444 333333322210 1
Q ss_pred CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCC
Q 038914 469 LMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI-RNNETSKVIELLHRMDMRNVMP 541 (570)
Q Consensus 469 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p 541 (570)
++|| ..+...+..+....|++..|..--+.... ..|....|..+.+.-. ..|+-.++..++-+..+..-.|
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 3343 45666777777788888888777666665 5677777777766544 3488888888888887544333
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00084 Score=45.36 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
..|++++|+.+|+.+.... |.+..++..++.+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555443 33455555555555555555555555555555
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.013 Score=50.86 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=101.3
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG 124 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (570)
.+......|++.+|...|..+++..| .+..+-..++.+|...|+.+.|..++..+..............-+..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa- 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA- 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-
Confidence 34455678899999999999999998 678888999999999999999999999887652211111111112222222
Q ss_pred CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914 125 SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (570)
....+...+-.++... +.|...-..+...+...|+.+.|++.+-.+.+.+. .-.|...-..|+..+.
T Consensus 217 ------a~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-----~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 217 ------AATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-----GFEDGEARKTLLELFE 283 (304)
T ss_pred ------hcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----cccCcHHHHHHHHHHH
Confidence 1333333333333321 23666666788888899999999998888887653 2344566667777766
Q ss_pred hcCCHHHHH
Q 038914 205 KKGFVDKAK 213 (570)
Q Consensus 205 ~~g~~~~a~ 213 (570)
-.|.-+.+.
T Consensus 284 ~~g~~Dp~~ 292 (304)
T COG3118 284 AFGPADPLV 292 (304)
T ss_pred hcCCCCHHH
Confidence 666444433
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.44 E-value=0.085 Score=47.71 Aligned_cols=292 Identities=11% Similarity=0.071 Sum_probs=168.0
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILF--GCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
.|.-....|+-..|.+.-.+..+.-. .+......++ ++-.-.|+++.|.+-|+.|+. .|....... -..|..
T Consensus 90 tGliAagAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGL-RgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGL-RGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhH-HHHHHH
Confidence 45555678899999999888765433 2333333333 455668999999999999997 354433221 111111
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhh--HHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVT--YTTII 200 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 200 (570)
-...|..+.|..+-+.....- +.-...+..++...|..||++.|+++++.-..... +.++..- -..|+
T Consensus 164 ----Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLL 233 (531)
T COG3898 164 ----AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLL 233 (531)
T ss_pred ----HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHH
Confidence 123578889998888877652 22356788899999999999999999998776542 3344321 12222
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038914 201 DGLCK---KGFVDKAKELFLKMKDENINPNAVT-YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN 276 (570)
Q Consensus 201 ~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (570)
.+-.. .-+...|.+.-.+..+ +.|+... -..-...+.+.|+..++-.+++.+-+....|+.. .+..+.+.
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~ 307 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARS 307 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcC
Confidence 22111 1234444444444443 2344322 2233466777788888888887777764444432 12223344
Q ss_pred CChhHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHHHHH
Q 038914 277 GKMDGASRLLELMILR-GVKP-DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK-TKDVEEGL 353 (570)
Q Consensus 277 g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 353 (570)
|+ .++.-+++..+. .++| +......+.++....|++..|..--+..... .|....|..|...-.. .||-.++.
T Consensus 308 gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 308 GD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHH
Confidence 43 233333322211 1222 3344555666666777777766665555554 3455556555554433 37777777
Q ss_pred HHHHHHHhC
Q 038914 354 NLYRKMLSK 362 (570)
Q Consensus 354 ~~~~~~~~~ 362 (570)
..+-+....
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 777766654
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.14 Score=50.56 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW--NEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (570)
.+++-+...+.+..|+++-..+...-.. +...|......+.+..+. +++.+.+++=.+.... .-..|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHh
Confidence 3566677778888998888777543211 256677777777766432 2233333332222122 34567777777888
Q ss_pred cCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 276 NGKMDGASRLLELMILRGVK----PDTSTYNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
.|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 89999888877542221100 011123333444555566655555554443
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.42 E-value=0.0025 Score=59.15 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPV---TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
..+...|..+...|++++|+..|+++++.+| .+. .+|+.++.+|...|++++|++.+++++..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555667777788999999999999999998 444 46999999999999999999999999986
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.001 Score=49.31 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=80.0
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG 124 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (570)
.|-.+...|+++.|++.|.+++..-| ....+||.-+.++.-+|+.++|++-++++++..-.. . .....++...|
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-t---rtacqa~vQRg 122 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-T---RTACQAFVQRG 122 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-c---hHHHHHHHHHH
Confidence 34445567899999999999999988 788999999999999999999999999999874222 2 23445667777
Q ss_pred CcchhhCCHHHHHHHHHHHHhcC
Q 038914 125 SSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
..|...|+-+.|..-|+...+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 78888999999999999988876
No 210
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.40 E-value=0.00026 Score=38.84 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNV 539 (570)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (570)
+|+.++.+|.+.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999998774
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.07 Score=45.41 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 337 SILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
+.++.++...+.+.-....+.+.++...+-++.....++..-.+.|+.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444455544444333334444444444444455555544444433
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0069 Score=53.43 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=47.7
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 038914 449 CKHGRLEIAWELFSSLPRVGLMADV----VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIR 520 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 520 (570)
.+.|++++|...|+.+++. .|+. ..+-.++.+|...|++++|...|+.+.+. .|+ ...+..++.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence 4456666666666666653 2332 34455666666666666666666666653 122 3344444555566
Q ss_pred cCCHHHHHHHHHHHHh
Q 038914 521 NNETSKVIELLHRMDM 536 (570)
Q Consensus 521 ~g~~~~a~~~~~~~~~ 536 (570)
.|++++|..+++++++
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666664
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.36 E-value=0.00029 Score=49.29 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLR 144 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (570)
..+++.++.++...|++++|++.|++++.. ..........+...+...|..+...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999999999864 111111222334444444455555566666666666554
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.21 Score=49.32 Aligned_cols=377 Identities=12% Similarity=0.083 Sum_probs=210.7
Q ss_pred HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh--------cCCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 038914 114 NILINCFLQNGSSLCVESRIMEAAALFTKLRV--------FGCEPDVFTYN-----TLINGLCRTGHTIVALNLFEEMAN 180 (570)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 180 (570)
..++++ +..|+.+.+..++++-..+...+.- .|++.+..-|. .++.-+...+.+..|+++...+..
T Consensus 387 K~LL~A-AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~ 465 (829)
T KOG2280|consen 387 KSLLRA-ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL 465 (829)
T ss_pred HHHHHH-HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC
Confidence 344443 4556677777788877777665542 35554444343 356667788999999999888765
Q ss_pred CCCCCCcccCCChhhHHHHHHHHHhcCC--HHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 181 GNGEIGVVCKPDTVTYTTIIDGLCKKGF--VDKAKELF-LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
.. ... ...|......+.+..+ -+++.+.+ +++... . -....|..+.......|+.+-|..+++.=...
T Consensus 466 p~------~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~ 536 (829)
T KOG2280|consen 466 PE------SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRS 536 (829)
T ss_pred cc------ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCc
Confidence 33 122 5677777777776632 22333333 333322 2 24556888888888999999998887642221
Q ss_pred CCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 258 GVQ----PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV 333 (570)
Q Consensus 258 ~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (570)
+.. .+..-+...+.-+...|+.+-...++-.+...- +... .+....+...|..+|.+..+.. +.
T Consensus 537 ~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~ 604 (829)
T KOG2280|consen 537 GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DR 604 (829)
T ss_pred cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---ch
Confidence 110 111223334444555566655555555544320 1111 1112234455666666654421 11
Q ss_pred hhHHHHHHHHHhcCCHHHHHH-HHHHHHhC-CCCCChhhHHHHHHHHhhcCCHH----------HHHHHHHHHHh-CCCC
Q 038914 334 VSYSILINGYCKTKDVEEGLN-LYRKMLSK-GIRPTVVTYHTLFLGLFEVHQVE----------HALKLFDEMRR-NHVA 400 (570)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~ 400 (570)
..+-..|....+...+-. .++..... .+.+-..........+.+..... .-+.+.+.+.. .+..
T Consensus 605 ---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 605 ---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred ---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111122222222222111 11111110 01111222333334444433311 11222222222 2222
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914 401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI 480 (570)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 480 (570)
....+.+--+.-+...|+..+|.++-.++. -||...|..-+.+++..+++++-+++-+... .+.-|.-.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 333445555666778899999998887775 6888888888999999999998777765543 356778889
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
.+|.+.|+.++|.+++-+... .. ..+.+|.+.|++.+|.++.-+-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHHh
Confidence 999999999999998866533 11 5667888889998888765443
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.15 Score=47.29 Aligned_cols=446 Identities=13% Similarity=0.128 Sum_probs=235.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPD------LYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT 154 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (570)
-+-.+.+++++.+|.++|.+..... ..+ ...-..+++++.. .+.+.-...+..+.+. .| ...
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl--------~nld~Me~~l~~l~~~--~~-~s~ 79 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL--------NNLDLMEKQLMELRQQ--FG-KSA 79 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH--------hhHHHHHHHHHHHHHh--cC-Cch
Confidence 3446778999999999999987652 112 1223355666554 3666666666666554 22 334
Q ss_pred HHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCcccCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 155 YNTLING--LCRTGHTIVALNLFEEMANGNGEIGVVCKP-----------DTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 155 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
|-.+..+ +.+.+++.+|++.+......-... -+| |...-+..+.++...|++.++..+++++..
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 4445444 357899999999887766541000 011 112224567788889999999999888876
Q ss_pred CC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 222 EN----INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ---GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV 294 (570)
Q Consensus 222 ~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 294 (570)
.= ..-+..+|+.++-.+.+. .|-++.+. .+-|+ |..++-.|.+.=. .++...-..+
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~ 219 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKF 219 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhh
Confidence 42 235777888766555433 33333222 22222 3334444433211 1111000012
Q ss_pred CCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C
Q 038914 295 KPDTSTYNTLIDGYCLTG--KIDRARELFVSMESNGCMHDV-VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----T 367 (570)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~ 367 (570)
.|.......++....-.. ...--.++++.....-+.|+- -+...+..-+.+ +.+++..+-+.+....+.+ -
T Consensus 220 ~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l 297 (549)
T PF07079_consen 220 IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL 297 (549)
T ss_pred CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH
Confidence 233333333333222111 112222333333333223332 222333333333 4444444444433321110 2
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-------HHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 038914 368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTT-------FIDGLCK----NGYIVKAVELFRTLRILKYEL 436 (570)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 436 (570)
..++..++....+.++...|.+.+.-+...+ |+...-.. +.+..+. ..+...=+.+++.+...+ .
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i 373 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I 373 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence 3467777778888899999988887776543 33221111 1122221 112333345555555443 2
Q ss_pred Chh-hHHHH---HHHHHhcCC-HHHHHHHHHhhhhCCCCC-ChhhHHHHH----HHHHh---cCChhHHHHHHHHHHHCC
Q 038914 437 NIV-SYNCL---IDGLCKHGR-LEIAWELFSSLPRVGLMA-DVVTYNIMI----HGLCN---DGQMDKAHGLFLDMEAKG 503 (570)
Q Consensus 437 ~~~-~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~ 503 (570)
|.. ....+ +.-+.+.|. -++|+++++.+.+. .+ |...-|.+. .+|.. ...+.+-..+-.-..+.|
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 221 12222 334566666 78999999999884 33 333323222 22221 123333333333344567
Q ss_pred CCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 504 LEPN----FVIFNTLMLG--FIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 504 ~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
++|- ...-+-|..+ +...|++.++.-.-.-+. .+.|+..+++.++-++.....+++|...++.
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 7763 3444555544 457899999887665555 3789999999999999999999999887653
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0039 Score=51.48 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914 423 VELFRTLRILKYELNIVSYNCLIDGLCK-----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC 484 (570)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (570)
...|+..... ..+..+|..+++.|.+ .|..+-....+..|.+.|+..|..+|+.|+.++=
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 3444444222 4577777777777764 3667777777777888888888888888887764
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0069 Score=50.05 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 388 LKLFDEMRRNHVAANTYIYTTFIDGLCKN-----GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFS 462 (570)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (570)
...|+.... -..+..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 444544422 256888999999998754 6777788888999999999999999999987654 3221 111111
Q ss_pred hhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038914 463 SLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN 522 (570)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (570)
.+- . -.-.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 110 ~~F---------------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 110 AEF---------------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHh---------------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 0 112244567888888888888888888888888875544
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.04 Score=46.26 Aligned_cols=204 Identities=12% Similarity=0.065 Sum_probs=105.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY 155 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 155 (570)
..|..-+.+|...+++++|...+.++.+.. .-+...| .....++.|.-+..++.+. +--+..+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf--------------hAAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF--------------HAAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH--------------HHHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 345666677888889999988888877431 1111111 1123566777777777654 2234456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCCHHH
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---N--INPNAVT 230 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~ 230 (570)
+.....|.++|..+.|-..++++-+.- ..-++++|+++|++.... + ...-...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~l----------------------env~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKAL----------------------ENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHh----------------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 677788888898888888887765421 223445555555544321 0 0011222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHhhHH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQ----GVQPNV-VTFTVIMDELCKNGKMDGASRLLELMILRGV---KPDTSTYN 302 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~ 302 (570)
+......+++...+++|-..+.+-... .-.++. ..|...+-.+.-..++..|.+.++...+.+- .-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 333444555555555554444332111 001111 1233344445555566666666666444321 12334445
Q ss_pred HHHHHHHhcCCHHHHHH
Q 038914 303 TLIDGYCLTGKIDRARE 319 (570)
Q Consensus 303 ~l~~~~~~~~~~~~a~~ 319 (570)
.|+.+| ..|+.+++..
T Consensus 233 nLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHh-ccCCHHHHHH
Confidence 555544 3455444443
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0018 Score=55.57 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 50 ITTITPNDALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
++.|++.+|...|...++..|. .....+++.|+.++..+|++++|..+|..+.+. .|+..... .++.+.|....
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KAp---dallKlg~~~~ 226 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAP---DALLKLGVSLG 226 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCCh---HHHHHHHHHHH
Confidence 3455666666666666665552 223445666666666666666666666666655 23221110 11111122222
Q ss_pred hhCCHHHHHHHHHHHHhc
Q 038914 129 VESRIMEAAALFTKLRVF 146 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~ 146 (570)
..|+.++|...|+++.+.
T Consensus 227 ~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 227 RLGNTDEACATLQQVIKR 244 (262)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 334666666666666554
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.17 Score=46.71 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNH---VAANTYIYTTFIDGLCK---NGYIVKAVELFRTLRILKYELNIVSYNCL 444 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 444 (570)
...++-+|-...+++...++.+.+.... +.....+-...+.++.+ .|+.++|.+++..+......++..++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445555555555555555554321 11122222233334444 55566666666554333334555555555
Q ss_pred HHHHHh---------cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC-hh---HHHHHH---H-HHHHCCCC-C
Q 038914 445 IDGLCK---------HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ-MD---KAHGLF---L-DMEAKGLE-P 506 (570)
Q Consensus 445 ~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-~~~~~~~~-p 506 (570)
+..|-. ....++|...|.+.-+. .|+..+=-+++..+.-.|. .+ +..++- . ...++|.. +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 544321 11255666666655542 3443322222222222232 11 122221 1 11122222 2
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 507 NFV--IFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 507 ~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
... .+..++.++.-.|++++|.+.+++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222 2345666777788888888888888865
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.05 Score=52.40 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-------
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT------- 475 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------- 475 (570)
..++..+...+.+...+..|-++|..+-.. ..+++.....++|.+|..+-+...+. .||...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344555555556666777777777766422 23455666778888888877776652 344321
Q ss_pred ----HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 476 ----YNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 476 ----~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|...-.+|.+.|+-.+|..+++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12223345555666666666665544
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.12 Score=44.08 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 350 EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429 (570)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 429 (570)
+..+++|++-.. .....++..+.-.|.+.-...++..+.+...+.++.....++..-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555554332 2344556666677888888899999988877888899999999999999999999999988
Q ss_pred HHcCCCCChhhHHHH-----HHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 430 RILKYELNIVSYNCL-----IDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504 (570)
Q Consensus 430 ~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (570)
.+..-..|....+.+ ...|.-++++..|...++++.... +.|+..-|.-.-+....|+..+|++.++.|...
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 764434444443333 334556778999999999988753 445566666666777789999999999999984
Q ss_pred CCCHHHHHHH
Q 038914 505 EPNFVIFNTL 514 (570)
Q Consensus 505 ~p~~~~~~~l 514 (570)
.|...+-+++
T Consensus 316 ~P~~~l~es~ 325 (366)
T KOG2796|consen 316 DPRHYLHESV 325 (366)
T ss_pred CCccchhhhH
Confidence 5655544433
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.13 Score=47.48 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=67.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK---KGFVDKAKELFLKMKDENINPNAV 229 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 229 (570)
.+...++-.|....+++..+++.+.+.....- .+......-...+-++.+ .|+.++|++++..+......+++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34456666788999999999999999874200 011123333455566777 899999999999977666777889
Q ss_pred HHHHHHHHHHhc---------CCHHHHHHHHHHHHH
Q 038914 230 TYTSLICGFCYA---------NDWNEAKHLFIEMMD 256 (570)
Q Consensus 230 ~~~~l~~~~~~~---------~~~~~a~~~~~~~~~ 256 (570)
+|..+...|-.. ...++|+..|.+.-.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 998888776432 124455555554443
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.2 Score=45.72 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (570)
+....+..+...|+...|.++-.+.. .|+...|...+.+++..+++++-..+... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555556666777777666655542 46677777777777777777766554321 123455677777777
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF 496 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (570)
+.|+..+|..+...+. +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777766521 134556677777777776653
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.057 Score=42.87 Aligned_cols=86 Identities=10% Similarity=-0.029 Sum_probs=38.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038914 379 FEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAW 458 (570)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (570)
...|++++|..+|.-+...+ +-+..-+..+..++-..+++++|+..|......+ ..|+..+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34455555555554444332 2233334444444444455555555554443333 223333333444555555555555
Q ss_pred HHHHhhhh
Q 038914 459 ELFSSLPR 466 (570)
Q Consensus 459 ~~~~~~~~ 466 (570)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554444
No 226
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.06 E-value=0.13 Score=42.43 Aligned_cols=188 Identities=18% Similarity=0.062 Sum_probs=108.1
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914 44 SSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN 123 (570)
Q Consensus 44 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (570)
..|...=+.|-.+.|+--|..++...| .-+..||-++.-+...|+++.|.+.|+...+..+.-+-...+.-
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg------- 140 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG------- 140 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-------
Confidence 344444455666778888888888888 77888999999999999999999999999987433333333333
Q ss_pred CCcchhhCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCcccCCChhhHHHHHH
Q 038914 124 GSSLCVESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLF-EEMANGNGEIGVVCKPDTVTYTTIID 201 (570)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (570)
-.+.-.|++.-|.+-+.+.-+.+.. |-...|..++ -+.-++.+|..-+ ++..+ .|..-|...+.
T Consensus 141 -i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----------~d~e~WG~~iV 206 (297)
T COG4785 141 -IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----------SDKEQWGWNIV 206 (297)
T ss_pred -eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----------ccHhhhhHHHH
Confidence 3334457999998888777665321 1112233333 2345666665443 44433 23344443333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPN-------AVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
.+.- |++. .+.+++++... ...+ ..+|--|...+...|+.++|..+|+-.+..
T Consensus 207 ~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 207 EFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2221 1111 12233333321 1111 345555666666777777777777666553
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.05 E-value=0.33 Score=46.85 Aligned_cols=397 Identities=12% Similarity=0.029 Sum_probs=224.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHH
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIM 134 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (570)
.+.+...++.++..-| .-.--|-..+..-.+.|..+.+.++|++.+.. ++.+...+...+..+... .|+.+
T Consensus 61 ~~~~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~------~~d~~ 131 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN------NGDPE 131 (577)
T ss_pred HHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc------CCCHH
Confidence 4677778888887766 44455777777778999999999999999864 444555566666555443 47888
Q ss_pred HHHHHHHHHHhc-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH---Hhc---
Q 038914 135 EAAALFTKLRVF-GCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL---CKK--- 206 (570)
Q Consensus 135 ~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~--- 206 (570)
.....|+..... |.. .....|...|..-..++++.....+++++++.- ...++..-.-| ...
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----------~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----------LHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----------hhHhHHHHHHHHHHHhcCCh
Confidence 888899888764 211 234568888888888899999999999998742 22222222222 221
Q ss_pred ---CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038914 207 ---GFVDKAKELFLKMKDE---N-INPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK 278 (570)
Q Consensus 207 ---g~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (570)
...+++.++-...... . ..+....+..-+..-.. .+..+++..++.+... .--.++.....
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~ 270 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEE 270 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHh
Confidence 2233333332222211 0 00011111111110000 0111111111111110 01112222333
Q ss_pred hhHHHHHHHHHHHCC---CC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914 279 MDGASRLLELMILRG---VK----PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEE 351 (570)
Q Consensus 279 ~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (570)
..+....++.-++.- +. ++..+|...+......|+.+.+.-+|+...-.- ..-...|-..+.-....|+.+-
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhH
Confidence 344444445444431 22 234577888888888999999998888875421 1123445555665666688888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH-hhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH---HHH
Q 038914 352 GLNLYRKMLSKGIRPTVVTYHTLFLGL-FEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVE---LFR 427 (570)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~ 427 (570)
|..++....+--.+ +......+-..+ -..|+++.|..+++.+...- +.....-..-+....+.|+.+.+.. ++.
T Consensus 350 ~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 350 ANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred HHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 88888777665333 333222222222 34689999999999998764 3333344444556677888888773 333
Q ss_pred HHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC
Q 038914 428 TLRILKYELNIVSYNCLIDG-----LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG 487 (570)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (570)
..... .-+......+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 428 ~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 428 SIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred Hhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 32221 2222222222222 23367899999999999886 4566677888877766554
No 228
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.079 Score=41.99 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=94.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILINCFLQNGSSLCV 129 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 129 (570)
..|..++|+..|..+.+.+-....+.+....+....+.|+-..|+..|+++-.....|... ....+-.+|. +..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l-----LvD 144 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL-----LVD 144 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH-----Hhc
Confidence 4678899999999998765534455666677788899999999999999998876555443 3333333332 344
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
.|.|+......+.+...+.+-....-..|.-+-.+.|++.+|.+.|+.+....
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 67999988888877665544444556678888889999999999999998755
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.03 Score=44.41 Aligned_cols=90 Identities=16% Similarity=-0.003 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914 410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM 489 (570)
Q Consensus 410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (570)
..-+...|++++|..+|.-+...+ +-+..-|..|..++...+++++|...|......+ .-|+..+-..+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334557788999988888877665 4566777888888888888888888888776543 23555556678888888888
Q ss_pred hHHHHHHHHHHH
Q 038914 490 DKAHGLFLDMEA 501 (570)
Q Consensus 490 ~~A~~~~~~~~~ 501 (570)
+.|...|...++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888877
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.00088 Score=46.79 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=51.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
.+++.+...|...|++++|+..|+++.+.....|. -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46888999999999999999999999865211111 1222 56788888899999999999999887654
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.035 Score=44.46 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=73.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CC-CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 038914 82 FGCLAKTKHYDTVLSLFKRLNSTG--LF-PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTL 158 (570)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 158 (570)
+......|+.+.+.+.++++.... .. ++..... =.......++... ..+...+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~-----------------W~~~~r~~l~~~~-------~~~~~~l 68 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEE-----------------WVEPERERLRELY-------LDALERL 68 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTST-----------------THHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccH-----------------HHHHHHHHHHHHH-------HHHHHHH
Confidence 334456778888888888887662 11 1111100 1111222222221 2355567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD-----ENINPNAVTY 231 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 231 (570)
+..+...|++++|+.+++.+...+ +-+...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+-
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 788888999999999999999876 56788999999999999999999999988753 3777776553
No 232
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0047 Score=42.38 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=20.7
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|.+.+++++|.++++.+...+ +.+...+...+.++...|++++|...|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444321 11223333344444444444444444444443
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.19 Score=43.96 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=86.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
.....|++..|...|....... +-+......++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777777766554 334555666677777777777777777766543111111221222333444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 492 AHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNV-MPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+++.+. .-|...-..+++.|.--|..+.+...|+|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44444444431 22566666677777777777777777666663321 23455556666666666665555544443
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0067 Score=54.99 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCC----C---------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRP----S---------RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL 106 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (570)
......|..+++.|++..|...|++++..-. . ..-..++..++.++.+.+++.+|++..++.+...
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~- 287 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD- 287 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-
Confidence 4466689999999999999999999875321 0 0112367788999999999999999999999884
Q ss_pred CCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCC-hhHHHHHHHHHHhCC
Q 038914 107 FPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT-YNTLINGLCRTGH-TIVALNLFEEMANGN 182 (570)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 182 (570)
|+. ..++.+.|..+...|+++.|+..|+++++. .|+... -+-|+.+-.+..+ .++..++|..|...-
T Consensus 288 -~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 288 -PNN------VKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred -CCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 433 255566666677778999999999999987 555444 4445554444443 344577888887543
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.95 E-value=0.0012 Score=36.90 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 038914 62 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 96 (570)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 96 (570)
|+++++.+| .++.+|+.++..|...|++++|++
T Consensus 2 y~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNP--NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688899999 999999999999999999999863
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.94 E-value=0.011 Score=45.51 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=58.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL 121 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (570)
|...+..|++++|.+.|+.+..+.|. +....+...++.++.+.|++++|+..+++.++.++......|...+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33445688999999999999998774 33456778899999999999999999999999966544455555555443
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.90 E-value=0.18 Score=47.43 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc----CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038914 90 HYDTVLSLFKRLNST-GLFPDLYAYNILINCFLQN----GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 164 (570)
Q Consensus 90 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (570)
..+.|+.+|.+++.. ...|+-......+..|.-. |..- ......+|.++-++.++.+ +.|..+...+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 346788899999822 2355544333333332221 1111 4567778888888888876 4477777777777778
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC
Q 038914 165 TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENIN-PNAVTYTSLICGFCYAND 243 (570)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 243 (570)
.++++.|...|+++...+ +....+|......+.-.|+.++|.+.+++..+.... .-.......++.|+. ..
T Consensus 351 ~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~ 422 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NP 422 (458)
T ss_pred hcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-Cc
Confidence 888999999999998865 333667777777777889999999999887665211 112222233334433 34
Q ss_pred HHHHHHHHHH
Q 038914 244 WNEAKHLFIE 253 (570)
Q Consensus 244 ~~~a~~~~~~ 253 (570)
.++|+.+|-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 5666666543
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.013 Score=46.90 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-----MRNVMPDASTLSIV 549 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~l 549 (570)
...++..+...|++++|..+.+.+.... +-+...|..++.++...|+..+|.+.|+++. +.|+.|+..+-...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 3445556667777777777777777642 3356677777777777777777777777764 34777776655443
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.84 E-value=0.77 Score=48.22 Aligned_cols=110 Identities=14% Similarity=0.183 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh--HHHHHHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT--YNIMIHG 482 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~ 482 (570)
.|.+....+...+.+++|.-+|+..-+ ....+.+|...|+|.+|+.+..++.. ..+... -..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence 444455555566677777666665422 12345677778888888888776653 122221 2456667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
+...+++-+|-++..+.... | ...+..+++...|++|.++....
T Consensus 1009 L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 77788888888887776652 1 22233445555666666655444
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.66 Score=46.70 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN 156 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (570)
.....+..+.+.|++++|...|-+.+.. +.|.. ++.-+.. ..+..+-..+++.+.+.|.. +...-.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLd-------aq~IknLt~YLe~L~~~gla-~~dhtt 435 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLD-------AQRIKNLTSYLEALHKKGLA-NSDHTT 435 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcC-------HHHHHHHHHHHHHHHHcccc-cchhHH
Confidence 3445666778899999999999888754 23322 3333322 34777788888888888765 556667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 236 (570)
.|+.+|.+.++.++-.+..+... .+. . ..-....+..+.+.+-.++|.-+-.+... +......++
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill- 500 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL- 500 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH-
Confidence 88999999999988776666544 110 1 22345567777777877877766655443 333344333
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 038914 237 GFCYANDWNEAKHLFIEM 254 (570)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~ 254 (570)
-..|++++|++.+..+
T Consensus 501 --e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 501 --EDLHNYEEALRYISSL 516 (933)
T ss_pred --HHhcCHHHHHHHHhcC
Confidence 3578899999888765
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.81 E-value=0.08 Score=49.73 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKMKDENIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMM 255 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 255 (570)
..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555555555555555555443111 122344455555555555555555555543
No 242
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.77 E-value=0.32 Score=47.19 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-----------hH
Q 038914 303 TLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV-----------TY 371 (570)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~ 371 (570)
.+...+.+...+..|-++|..|-+. ..+++.....++|.+|..+-++..+. .|+.. -+
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhH
Confidence 3333344444555555555554332 23444555556666665555543331 22211 11
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHh
Q 038914 372 HTLFLGLFEVHQVEHALKLFDEMRR 396 (570)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (570)
...-.+|.+.|+-.+|..+++++..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1122334445666666666666543
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.027 Score=51.29 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=74.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN 160 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 160 (570)
-+..+.+.|+|..|...|+++++.=..- + .-+.++...... .-..+++.|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~-------------~-------~~~~ee~~~~~~--------~k~~~~lNlA~ 265 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR-------------R-------SFDEEEQKKAEA--------LKLACHLNLAA 265 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc-------------c-------cCCHHHHHHHHH--------HHHHHhhHHHH
Confidence 3457889999999999999987541000 0 001111111110 11234445555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038914 161 GLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY 240 (570)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (570)
++.+.+++.+|+...++.+..+ ++|+-....-..+|...|+++.|+..|+++++.... |-.+-..|+.+-.+
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~-------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELD-------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQK 337 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 6666666666666666666654 445555555666666666666666666666655533 44444444444444
Q ss_pred cCCHHH-HHHHHHHHHH
Q 038914 241 ANDWNE-AKHLFIEMMD 256 (570)
Q Consensus 241 ~~~~~~-a~~~~~~~~~ 256 (570)
.....+ ..++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 333332 2455555543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.70 E-value=0.17 Score=49.42 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-------HHHHHHHhcCCcchhh
Q 038914 58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN-------ILINCFLQNGSSLCVE 130 (570)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~ 130 (570)
...+|+-++..-| .....++....-.|+-+.+++++.+..+.+ ........ .++..+... . - ..
T Consensus 176 G~G~f~L~lSlLP-----p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~-~-~-~~ 246 (468)
T PF10300_consen 176 GFGLFNLVLSLLP-----PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGI-D-G-ED 246 (468)
T ss_pred HHHHHHHHHHhCC-----HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCC-c-c-cC
Confidence 3567777777766 345677777888899999999999887642 22221111 111111111 0 0 23
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNT-LINGLCRTGHTIVALNLFEEMA 179 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 179 (570)
...+.|.++++.+..+ -|+...|.. -.+.+...|+.++|++.|+++.
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4555566666655554 334333332 2334445566666666666544
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.022 Score=53.08 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=70.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 038914 435 ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV----VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVI 510 (570)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (570)
+.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456778999999999999999999999999884 5664 358899999999999999999999999842 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHhCCC
Q 038914 511 FNTLML--GFIRNNETSKVIELLHRMDMRNV 539 (570)
Q Consensus 511 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 539 (570)
|..+.. .+..-.+..+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122233466667777766553
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=96.65 E-value=0.1 Score=49.00 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHh-CCCCcC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 383 QVEHALKLFDEMRR-NHVAAN-TYIYTTFIDGLCKN---------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 383 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
..+.|+.+|.+... +...|+ ...|..+..++... .+..+|.+..++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45677888888772 223333 44455454444321 23456777777788877 67888888888877888
Q ss_pred CCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 038914 452 GRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV---IFNTLMLGFIRNNETSKV 527 (570)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a 527 (570)
++++.|...|++.... .||. .+|......+...|+.++|.+.+++..+ +.|... .....+..|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8899999999988874 5654 6677777778888999999999888777 355432 3333444565554 5667
Q ss_pred HHHHHHHH
Q 038914 528 IELLHRMD 535 (570)
Q Consensus 528 ~~~~~~~~ 535 (570)
++++-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 77665443
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.57 E-value=0.42 Score=41.08 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
+..|..-+....+.|++++|...|+.+.+..+...-.--..+..++ .+.+.+++++|+...++....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~y-----A~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAY-----AYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHH-----HHHhcccHHHHHHHHHHHHHh
Confidence 3445555555666677777777777776653221111111111111 122334666666666666655
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.066 Score=41.04 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML 516 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (570)
|..++..++.++++.|+.+....+++..-. +..+...- .+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777777765422 11111000 000 0011234555666666666
Q ss_pred HHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 038914 517 GFIRNNETSKVIELLHRMD-MRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~ 553 (570)
+|...|++..|+++++... ..+++.+..+|..|++-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 6666666666666666655 345555556666655553
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.053 Score=48.40 Aligned_cols=242 Identities=13% Similarity=0.056 Sum_probs=119.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG 124 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (570)
|..++...+.+.|+..+...+..-. .-.-...+..+..+..+.|.+++++..--.-+..- .+-..-.....++.+..
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a--~~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA--RELEDSDFLLEAYLNLA 90 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344556677888887777664321 01112234456677888888887765433222221 11111112223333222
Q ss_pred CcchhhCCHHHHHHHHHHHHhc-CCCC--C-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914 125 SSLCVESRIMEAAALFTKLRVF-GCEP--D-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII 200 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~-~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (570)
..+.+--++.+++.+-..-... |..+ + -.....+..++.-.+.++++++.|+.+.+...+.+. .......+..|.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lg 169 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHH
Confidence 1122222333333333322221 1111 1 123334556667778889999999888764422111 122345788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhH
Q 038914 201 DGLCKKGFVDKAKELFLKMKDE----NINPNAVTY-----TSLICGFCYANDWNEAKHLFIEMMDQ----GVQP-NVVTF 266 (570)
Q Consensus 201 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 266 (570)
..|.+..++++|.-+..+..+. ++..-..-| ..+.-++...|...+|.+.-++..+. |..+ -....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 8888888888887766555432 222111112 22334455566666666665554432 2111 11223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 038914 267 TVIMDELCKNGKMDGASRLLELMI 290 (570)
Q Consensus 267 ~~l~~~~~~~g~~~~a~~~~~~~~ 290 (570)
..+...|...|+.+.|..-|++..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHH
Confidence 345556666666666666555543
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.35 Score=47.20 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhhhhCC--C-CCChhhHHHHHHHHHhcCChhH
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSY-NCLIDGLCKHGRLEIAWELFSSLPRVG--L-MADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
....+.|.+++..+... -|+...| ..-.+.+...|++++|.+.|+...... . ......+.-++.++.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34667777788777765 3444433 333455667788888888888655311 1 1123445567777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 038914 492 AHGLFLDMEAKGLEPNFVIFNTLM-LGFIRNNET-------SKVIELLHRMD 535 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~ 535 (570)
|...|..+.+.. ..+..+|..+. .++...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888888753 22444444333 344556766 77777777765
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=0.82 Score=41.25 Aligned_cols=234 Identities=13% Similarity=0.034 Sum_probs=135.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc--CCC---CCcchH
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF--GCE---PDVFTY 155 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 155 (570)
-+.-+....+.++|+..+.+.+..- .+... -+..+-.........|.+++++..--..+.. ... .-..+|
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l--~~~~~---Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKL--SDLMG---RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHH--HHHHH---HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777788887777766531 11111 1111111112333445666655433222111 001 112456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKP---DTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN-----INPN 227 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~ 227 (570)
..+.+.+.+.-++.+++.+-..-....+ ..| -.....++..+..-.+.++++++.|+...+.. .-..
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpg-----t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPG-----TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCC-----CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 6677777777788888887766655332 111 12334556667777788999999998876531 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-h-----hHHHHHHHHHhcCChhHHHHHHHHHHHC----C
Q 038914 228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQ----GVQPNV-V-----TFTVIMDELCKNGKMDGASRLLELMILR----G 293 (570)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 293 (570)
..++..|...|....|+++|.-+..+..+. ++. |. . ....+.-++...|.+..|.+..++..+. |
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 467888999999999999988776655432 222 11 1 1223445677888888888888776543 3
Q ss_pred CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 294 VKPD-TSTYNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 294 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
-.+. ......+.+.|...|+.+.|+.-|++..
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2221 2334556678888899888888877654
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.93 E-value=1.2 Score=40.16 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=98.1
Q ss_pred CCCCChhHHHHHHHHHHhcC-CCCCCH-----HhHHHHHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCCH----
Q 038914 50 ITTITPNDALCVFDYMLNMR-PSRPPV-----TSFNILFGCLAKTK-HYDTVLSLFKRLNST--------GLFPDL---- 110 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 110 (570)
.+.|+.+.|...+.++.... ...|+. ..++..+..+...+ +++.|..+++++.+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46889999999999987654 211221 13445566667778 999998888887554 122333
Q ss_pred -hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914 111 -YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 189 (570)
Q Consensus 111 -~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 189 (570)
.++..+..++...+ .....++|..+++.+.... +..+.++..-+.++.+.++.+.+.+.+..|...-
T Consensus 84 ~~iL~~La~~~l~~~----~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------- 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWD----TYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV------- 151 (278)
T ss_pred HHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------
Confidence 23334444444432 2235566777777775542 2235566677788888899999999999998753
Q ss_pred CCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 190 KPDTVTYTTIIDGL---CKKGFVDKAKELFLKMKDENINPN 227 (570)
Q Consensus 190 ~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 227 (570)
.-....+...+..+ .... ...+...+..+....+.|.
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 21234444444444 3332 3455555555544333333
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.93 E-value=0.18 Score=37.88 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
....|+++.|++.|.+.+.. .+.+...||.-.+++.-.|+.++|+.-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554442 122344455555555555555555555555444
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.91 E-value=1.6 Score=41.45 Aligned_cols=164 Identities=11% Similarity=0.119 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT-VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
..+|.-..+..+...-++.-.++++.+ ||. ..|..|.. -......+++++|++..+.|- ..+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg-- 235 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLG-- 235 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhc--
Confidence 345555567777888888888887754 443 34443332 123457888999988876531 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCC
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 313 (570)
+.......-..++....+...+-..+-..+..++.+.|+.++|.+.+++|.+.... ....+...|+.++...+.
T Consensus 236 -----~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 236 -----KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred -----hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 00000010111222222222333444456777888899999999999999875322 234467788999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHhhHHHHH
Q 038914 314 IDRARELFVSMESNGCMH-DVVSYSILI 340 (570)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 340 (570)
+.++..++.+..+...+. -..+|+..+
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 999999998876543322 234566544
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.92 Score=38.54 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (570)
..|.....+|....++++|...+.+..+. .+-+...|+ . ...++.|.-+.+++... .--...+......|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555556777778888887777666542 222222222 1 22344555555555433 11223455556667
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038914 309 CLTGKIDRARELFVSME 325 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~ 325 (570)
..+|..+.|-..+++.-
T Consensus 102 ~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA 118 (308)
T ss_pred HHhCCcchHHHHHHHHH
Confidence 77777776666665543
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=2.4 Score=42.99 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=116.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT 157 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (570)
....+..+.+...++-|+.+.+. .+ .+..+...+...| |.-+...|++++|...|-+.+.. .+| ..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 34455666777778888777553 22 3344444444433 44566778999999999877643 122 24
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
+|.-|....+...-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~I 472 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEI 472 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence 5666667777777788888888876 3456666789999999999998888776654 2221 1113455666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
+.+.+-.++|..+-..... +......+ +-..+++++|++++..+
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777777777666554432 23333333 45678899999988765
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.21 Score=38.27 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---------CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE---------IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
..++..+|.++++.|+.+....+++..-..+.. .+....|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456778999999999999998888776543311 11113344444455555555555555555554444332
Q ss_pred -CCCCCHHHHHHHH
Q 038914 223 -NINPNAVTYTSLI 235 (570)
Q Consensus 223 -~~~~~~~~~~~l~ 235 (570)
+++.+..+|..|+
T Consensus 82 Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 82 YPIPIPKEFWRRLL 95 (126)
T ss_pred cCCCCCHHHHHHHH
Confidence 3333344444444
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.33 Score=42.14 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=38.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 038914 164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-N-INPNAVTYTSLICGFCYA 241 (570)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~ 241 (570)
+.|++..|...|....+..+.. .-....+.-|..++...|+++.|..+|..+.+. + .+--+..+..|..+..+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3444444444444444443221 111223333444444444444444444444322 1 111234444444444455
Q ss_pred CCHHHHHHHHHHHHHC
Q 038914 242 NDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 242 ~~~~~a~~~~~~~~~~ 257 (570)
|+.++|..+|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 5555555555554443
No 259
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.78 E-value=0.041 Score=48.63 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=81.7
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL 121 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (570)
....|..++++|.|++|+..|.+.+...| .|+..+..-+.+|.+..+|..|..-...++... ...+.+|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYS 169 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYS 169 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHH
Confidence 45678899999999999999999999998 888999999999999999999988888877542 23457777
Q ss_pred hcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 122 QNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
+.+......|...+|.+-++..++. +|+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 7776666678999999999998876 555
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.74 E-value=0.091 Score=45.24 Aligned_cols=104 Identities=16% Similarity=0.318 Sum_probs=54.7
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 038914 436 LNIVSYNCLIDGLCK-----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVI 510 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (570)
-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+.. +.|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HH
Confidence 344555555554432 2445555555666666666666666666665543221 0111 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 038914 511 FNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEI 558 (570)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 558 (570)
+.....-|- .+-+-++.++++|...|+.||.++-..++.++++.|-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1224467777777777777777777777777766554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.36 Score=42.87 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHhhcCCHH
Q 038914 310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHT----LFLGLFEVHQVE 385 (570)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~ 385 (570)
..|+..+|-..++++++. .|.|...+...-.+|...|+.+.-...+++++.. ..++...|.. ..-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777777777765 3567777777778888888888888888887765 2344433322 233445788888
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHHhcCCHHHHHHHH
Q 038914 386 HALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL-N---IVSYNCLIDGLCKHGRLEIAWELF 461 (570)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~ 461 (570)
+|++.-++..+.+ +.|.....+....+...|+..++.++..+-... ... + ...|-...-.+...+.++.|+.+|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777654 556666667777777888888888776654321 010 0 111223334556668888888888
Q ss_pred Hhhhh
Q 038914 462 SSLPR 466 (570)
Q Consensus 462 ~~~~~ 466 (570)
+.-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 75443
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.70 E-value=0.033 Score=33.36 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 111 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 111 (570)
.+|..++..+.+.|++++|+++|+++++. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 45677778888888888888888888876 45443
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.66 E-value=0.31 Score=37.85 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=52.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY--AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP 150 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (570)
.+...+..-+....+.|++++|++.|+.+...-+...-. .-..++- .+.+.+++++|...+++.++..+..
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~y-------ayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAY-------AYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhCCCC
Confidence 345556677777788888888888888888773322211 1222222 3444568888888888888774432
Q ss_pred CcchHHHHHHHHHh
Q 038914 151 DVFTYNTLINGLCR 164 (570)
Q Consensus 151 ~~~~~~~l~~~~~~ 164 (570)
...-|...+.+++.
T Consensus 81 p~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 81 PNVDYAYYMRGLSY 94 (142)
T ss_pred CCccHHHHHHHHHH
Confidence 33345555555544
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.64 E-value=2.8 Score=44.42 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=48.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcC
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTS--TYNTLIDGYCLTG 312 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 312 (570)
...+...+.+++|.-.|+..-+ ....+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 3444445555555555544321 123345555666666666665554321 1111 1234455555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357 (570)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (570)
++-+|-++.....+. ....+..|++...+++|+.+-.
T Consensus 1014 kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 666665555554432 1222333444455555555444
No 265
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.61 E-value=2 Score=40.18 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=83.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914 369 VTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG 447 (570)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (570)
..|...+....+..-.+.|..+|-++.+.+ +.++..++++++..++ .|+..-|..+|+.-...- +.+..--+..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345555666666677778888888877766 5566777777777554 477777888887654432 2233333455566
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMAD--VVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67777878888888755542 2223 35677777766677777777776666665
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.39 Score=46.15 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=91.6
Q ss_pred HHHHhcCCHHHHHHHHH--HHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 038914 341 NGYCKTKDVEEGLNLYR--KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY 418 (570)
Q Consensus 341 ~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 418 (570)
+...-.++++.+.+... ++.. .+ ...-...++..+.+.|-.+.|+.+..+- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 34445677777776664 1111 11 2334566666667777777777664322 1 12233456788
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914 419 IVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLD 498 (570)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (570)
++.|.++.+. ..+...|..|.+.....|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 8877766543 23666788888888888888888888887654 45666677777887777777766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 499 MEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
....|- ++....++.-.|+.++..+++.+-
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 665531 444555666678888877777654
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.46 Score=45.71 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+...|..|.....+.|+++-|+..|++.. -+..|+-.|.-.|+.+...++.+.....|-
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 33455555555555555555555555421 233444445555555555444444444321
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 038914 231 YTSLICGFCYANDWNEAKHLF 251 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~ 251 (570)
++....++.-.|+.++..+++
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 233333344444544444444
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=1.1 Score=35.88 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=69.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-h--HHHHHHHHHh
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-T--YTTIIDGLCK 205 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~ 205 (570)
.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-... ..|-.. - -..-.-.+..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhc
Confidence 357778888888777765442221 12223344566778888888888876654 122211 1 1111223455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
.|.++......+.+...+-+.-...-..|.-+-.+.|++.+|..+|..+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6677776666666655544444445555666666677777777777666553
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.41 E-value=0.045 Score=32.79 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII 200 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (570)
.++..+...|.+.|++++|+++|+++.+.. +.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 357788999999999999999999999975 45566666554
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.41 E-value=1 Score=35.60 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC
Q 038914 409 FIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ 488 (570)
Q Consensus 409 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (570)
++..+...+.+.....+++.+...+ +.+....+.++..|++.. ..+....++. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444455555555555555444 244445555555555432 2233333331 1122233345555555555
Q ss_pred hhHHHHHHHHH
Q 038914 489 MDKAHGLFLDM 499 (570)
Q Consensus 489 ~~~A~~~~~~~ 499 (570)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.68 Score=41.24 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=112.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038914 162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGF 238 (570)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~ 238 (570)
+.-.|.+.+|...++++++.. |.|..++...-.+|...|+.+.....++++... +++-.......+.-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 456788999999999999874 778888888889999999999999999998765 2222233334555667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHH
Q 038914 239 CYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK---PDTSTYNTLIDGYCLTGKID 315 (570)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 315 (570)
...|-+++|++.-++..+.+ +-|...-......+-..|++.++.+++.+-...--. .-...|-...-.+...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 78899999999999888764 336677778888888899999999987664432100 01122333344566778899
Q ss_pred HHHHHHHH
Q 038914 316 RARELFVS 323 (570)
Q Consensus 316 ~a~~~~~~ 323 (570)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 99999876
No 272
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.26 E-value=1.8 Score=37.44 Aligned_cols=201 Identities=10% Similarity=0.075 Sum_probs=115.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHhhHHHHHHHHHh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNST---GL--FPDLYAYNILINCFLQ 122 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~ 122 (570)
++...+++|+.-|++.++..|.... ..+.-.++....+.|++++-...|.+++.. .+ .-+....+.++...+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 3456899999999999998773222 345667888999999999999999887543 11 2234445555554443
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Cc-cc---CCChhhHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI-GV-VC---KPDTVTYT 197 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~---~~~~~~~~ 197 (570)
...+-.-+.-++..+..++..... ..-..+-..|...|...|++.+...++.++.+.-... |. .. ..-...|.
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 321111222233333333333211 1112344567788888888888888888876542110 00 00 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH----HHHHhcCCHHHHHHHHH
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDEN-INPNAVTYTSLI----CGFCYANDWNEAKHLFI 252 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~ 252 (570)
.=+..|..+.+-.+...+|++..... .-|.+.....+- ....+.|+|++|..-|-
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence 66777888887777778887765432 223443333322 22345677777654433
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=1.9 Score=37.62 Aligned_cols=198 Identities=19% Similarity=0.100 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-H
Q 038914 335 SYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID-G 412 (570)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 412 (570)
.+......+...+.+..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444444445555554444444331 111223333344444444444555555555444332111 111111111 4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCCh
Q 038914 413 LCKNGYIVKAVELFRTLRILKY--ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQM 489 (570)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 489 (570)
+...|+++.|...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 5555666666666665543210 0122222333333455566666666666666531 12 245555666666666666
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 490 DKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666653 233 33333343344455556666666666654
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.16 E-value=0.047 Score=30.93 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNS 103 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (570)
+|..|+.++.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999999654
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.09 E-value=2.1 Score=37.37 Aligned_cols=200 Identities=19% Similarity=0.057 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 038914 299 STYNTLIDGYCLTGKIDRARELFVSMESN-GCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL- 376 (570)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 376 (570)
.........+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555556666555555555431 112334445555555555566666666666665542222 111122222
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 038914 377 GLFEVHQVEHALKLFDEMRRNHV--AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL-NIVSYNCLIDGLCKHGR 453 (570)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 453 (570)
.+...|+++.+...+........ ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56666777777777766644211 0122333333333556777888888887777654 33 35667777777777888
Q ss_pred HHHHHHHHHhhhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 454 LEIAWELFSSLPRVGLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888887764 333 344445555555666788888888777763
No 276
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.05 E-value=1.7 Score=36.23 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 133 IMEAAALFTKLRVFGCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
.+-|.--|.+.+.. .| -+.+||.|..-+...|+++.|.+.|+...+.+ +....+...-.-.+.-.|++.-
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------p~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------CcchHHHhccceeeeecCchHh
Confidence 33333344444433 23 34567777777777888888888888877765 2223333333334445677777
Q ss_pred HHHHHHHHHhC
Q 038914 212 AKELFLKMKDE 222 (570)
Q Consensus 212 a~~~~~~~~~~ 222 (570)
|.+-|.+....
T Consensus 152 Aq~d~~~fYQ~ 162 (297)
T COG4785 152 AQDDLLAFYQD 162 (297)
T ss_pred hHHHHHHHHhc
Confidence 77766666554
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.89 E-value=3.5 Score=38.92 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHhhhhCCCCCChhh----HHHHHHHHHhcC----ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 038914 451 HGRLEIAWELFSSLPRVGLMADVVT----YNIMIHGLCNDG----QMDKAHGLFLDMEAKGLE--PNFVIFNTLMLGFIR 520 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~ 520 (570)
.|+.++|+.++-.+.+ +.||..- |..+++.+.... ..-...+.+.-..+.-+- .+.............
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH 788 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence 5889999999888776 6787642 444555444321 111111112212221011 122222222222345
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc
Q 038914 521 NNETSKVIELLHRMDMRNV--MPDASTLSIVVDLLVK 555 (570)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~ 555 (570)
..++..|+++|+++.+-+- +|-..-....+.++.+
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 6789999999999986542 2333445566666654
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.57 E-value=0.085 Score=29.33 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57889999999999999999999999876
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.47 E-value=1.6 Score=34.83 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN 123 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (570)
..++.+++..+++-+.-..| .....-..-+..+.+.|+|.+|+.+|+++... .|.......++..|...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP--~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRP--EFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred ccCChHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 45578888888888888877 44444444455667888888888888887766 34444555555555443
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.43 E-value=0.094 Score=29.08 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
..|..++.++...|++++|++.|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.43 E-value=1.7 Score=33.09 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG 468 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (570)
.+...|.-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334444444444444443322 3444444444444444444444444444444433
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.20 E-value=0.68 Score=40.91 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA-----KGLEPNFVIFN 512 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 512 (570)
..++..++..+...|+++.+...++++.... +-+...|..++.+|...|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3444555555566666666666666665542 33455566666666666666666666655543 25555544443
Q ss_pred H
Q 038914 513 T 513 (570)
Q Consensus 513 ~ 513 (570)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 3
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.73 E-value=0.16 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLD 498 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~ 498 (570)
|..|+.+|...|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555444
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.68 E-value=0.48 Score=38.77 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhCCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914 445 IDGLCKHGRLEIAWELFSSLPRVGLMAD-----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF 518 (570)
Q Consensus 445 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (570)
..-+...|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.-..+.++. .|+ ...+..-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHH
Confidence 55678899999999999999885 2332 234666777888999999999999998884 453 34455556788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDAS 544 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~ 544 (570)
.+..++++|++-|+++.+. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 9999999999999999965 35543
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=3.9 Score=34.70 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=12.1
Q ss_pred HhcCChHHHHHHHHHHH
Q 038914 86 AKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 86 ~~~g~~~~A~~~~~~~~ 102 (570)
.-.+.+++|.++|.++.
T Consensus 25 gg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAA 41 (288)
T ss_pred CCCcchHHHHHHHHHHH
Confidence 34567888888887765
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.49 E-value=0.098 Score=28.73 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
++..++.++.+.|++++|++.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888999999999999999999887
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.42 E-value=0.99 Score=39.93 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh-----CCCCCChhhHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR-----VGLMADVVTYNI 478 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 478 (570)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455667777788888888888888888776 67788888888888888888888888877654 466776666555
Q ss_pred HHHH
Q 038914 479 MIHG 482 (570)
Q Consensus 479 l~~~ 482 (570)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 288
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=3.1 Score=35.42 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=88.4
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
+.....|.......+++.|+..|-+++..+| ....-|..-+.++.+.++++.+..--.+++.. .|+..--...+..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQ 86 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHH
Confidence 4555678778888899999999999999988 55566778888999999999999988888876 6665544444443
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVF----GCEPDVFTYNTLINGLCRTGHTIVALNLFEE 177 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (570)
+ +.....+++|+..+.+.... .+.+.......|..+--+.=...+..++.++
T Consensus 87 ~------~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 87 W------LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred H------HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 3 34457899999999987432 2233344555555543333334444444444
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.31 E-value=0.71 Score=37.34 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-----------HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
.+++|+.-|+.++..+| ....++..++.++...+ .|++|...|+++... .|+...|...+....
T Consensus 50 miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence 46789999999999999 67788888888776544 266777777777776 899999998887653
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcC
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
+|-.++.++.+.+
T Consensus 125 ------------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ------------KAPELHMEIHKQG 137 (186)
T ss_dssp ------------THHHHHHHHHHSS
T ss_pred ------------hhHHHHHHHHHHH
Confidence 4667777776654
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.26 E-value=3.3 Score=32.65 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555555666666777776666654 355566666776666543 3333344331 12233344456666666
Q ss_pred CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914 452 GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND-GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519 (570)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (570)
+-++++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666665532 12223333333 5666666655431 24556666655544
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.19 E-value=3.6 Score=32.83 Aligned_cols=52 Identities=19% Similarity=-0.017 Sum_probs=27.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
.+.++.+.+..++..+.... |-....-..-...+...|++.+|.++|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34556666666666665543 22222222233345566666666666666654
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.08 E-value=1.4 Score=36.44 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH--H
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFN--T 513 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 513 (570)
..+..++..|.+.|+.+.|.+.|.++.+....+.. ..+..+++.....|++..+...+.++...--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34666777788888888888888887775434332 456677777777888888887777665431111 111111 1
Q ss_pred HH--HHHHhcCCHHHHHHHHHHHH
Q 038914 514 LM--LGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 514 l~--~~~~~~g~~~~a~~~~~~~~ 535 (570)
.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 23456788888888776665
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.91 E-value=0.96 Score=37.11 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=73.0
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPP---VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN 118 (570)
Q Consensus 42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 118 (570)
...-|..++++|++.+|..-|..++..-|..+. ...|..-+.++.+.+.++.|+.-..+++..+ |. |..
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pt---y~k--- 169 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PT---YEK--- 169 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--ch---hHH---
Confidence 455788889999999999999999998773222 2356667788999999999999999999874 32 221
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcC
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
++.+....|-+...+++|+.-|.++.+..
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 11122233445579999999999998873
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.90 E-value=0.15 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=9.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHH
Q 038914 436 LNIVSYNCLIDGLCKHGRLEIA 457 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A 457 (570)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3344444444444444444443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.82 E-value=0.26 Score=27.28 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33344444444444444444444443
No 296
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.81 E-value=3.4 Score=31.50 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914 373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK 433 (570)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 433 (570)
..+..+...|+-+...+++..+.+.+ .+++..+..+..+|.+.|+..++.+++.++-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444455555555555555554422 4455555555556666666666665555555544
No 297
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.62 E-value=1.2 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914 280 DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (570)
+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466777777777777777777777777766554
No 298
>PRK09687 putative lyase; Provisional
Probab=92.56 E-value=7.7 Score=34.99 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSLPRVGLMADVVTYNIMI 480 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 480 (570)
+..+-...+.++.+.++. .+...+-.+.. .++..+-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 455555666666666653 44455444443 334444444444555442 23455555555554 34666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV 554 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 554 (570)
.++.+.|+ ..|...+.+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+....++++.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77777776 45666666665532 2 234556677777774 677788877753 357666666666654
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.55 E-value=14 Score=37.96 Aligned_cols=47 Identities=11% Similarity=-0.090 Sum_probs=23.9
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF 496 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (570)
.+...|....|...+..+.+. .+......+.......|.++.++...
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444556666666666665552 23333344444444555555555443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=13 Score=37.57 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHH
Q 038914 91 YDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRV-------FGCEPDVFTYNTLINGLC 163 (570)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 163 (570)
...|.++++.+.+.|.. .....+...+ ..| .+....+++.|+.+|+.+.+ .+ ...+...+..+|.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y-~~G-~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICY-LAG-TYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHH-hhc-cccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 46788999988887531 1111111111 111 14456799999999998876 44 4456667788877
Q ss_pred hcC-----ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 164 RTG-----HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK-KGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 164 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
+.. +...|..++.+....+ .|+.......+..... ..+...|.++|......|.. ..+-.+..+
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~ 369 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALC 369 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHH
Confidence 643 6677999999988876 3444333322222222 24578999999999888743 222223322
Q ss_pred HH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 038914 238 FC----YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG 293 (570)
Q Consensus 238 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 293 (570)
|. ...+.+.|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+...+
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 22 23477888999988888762 222222223333333 67777777666666654
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.51 E-value=13 Score=37.53 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICG-----FCYANDWNEAKHLFIEMMD-------QGVQPNVVTFTVIMDELCKN 276 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 276 (570)
...|.++++...+.|. ...-..+..+ +....+.+.|+.+++.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4678888888887763 3322222222 3356788999999988876 44 334556667777664
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hc
Q 038914 277 G-----KMDGASRLLELMILRGVKPDTSTYNTLIDGYCL-TGKIDRARELFVSMESNGCMHDVVSYSILINGYC----KT 346 (570)
Q Consensus 277 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 346 (570)
. +.+.|..++...-..| .|+.......+..... ..+...|.++|......|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 4556888888777765 3343333222222222 24567888888888777632 22222222222 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914 347 KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH 398 (570)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (570)
.+.+.|..++.+..+.| .|........+..+.. ++++.+...+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35677777777777765 2222222222222333 55555555555544443
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.30 E-value=2.7 Score=34.71 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNGKMDGASRLLELMI 290 (570)
Q Consensus 230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 290 (570)
.+..+...|++.|+.++|.+.|.++......+. ...+..+++.....+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555666666665555554422221 2334445555555555555555555444
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.20 E-value=4.7 Score=31.64 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG 105 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (570)
.++++++..+++.+.-..|..+....+ -+-.+...|+|.+|+.+|++....+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 568888888888888888844444433 3445678899999999999888764
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.13 E-value=0.36 Score=26.64 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=8.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038914 478 IMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
.++.++...|++++|++.|++.+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33334444444444444444433
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=2.7 Score=40.91 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 178 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 178 (570)
|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|...
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 35555555444321 3344555666555666666665555553
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.10 E-value=8.5 Score=36.69 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW 244 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (570)
.+.++...+++..+...|.......++.-+..|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 455666666666666655544444455555555555543
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.03 E-value=1.3 Score=35.86 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc---C-------ChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhc
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKT---K-------HYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQN 123 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 123 (570)
++.|++.++.....+| .+...++.-+.++... . .+++|+.-|++++.. .|+. ..+..+-.++...
T Consensus 7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 5678888888888888 7777777666665443 3 334566666666665 5654 3444444445444
Q ss_pred CC----cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914 124 GS----SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 181 (570)
Q Consensus 124 ~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (570)
+. .-.....+++|...|++.... +|+...|+.-+.... +|-++..++.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 31 112223467777777777765 788899988777653 466666666554
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.60 E-value=1.1 Score=40.06 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=72.1
Q ss_pred hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914 122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID 201 (570)
Q Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (570)
..|..|.++|.|++|+..|...+... +-+.+.+..-..+|.+...+..|..-...+...+ ..-+.+|..-+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-------KLYVKAYSRRMQ 173 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHH
Confidence 46788999999999999999988763 2278888888999999999999988888877654 222445666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 038914 202 GLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+-...|+..+|.+-++..+..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhh
Confidence 666677788888878777764
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.16 E-value=0.54 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
.+++.++..|...|++++|..+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999998754
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.10 E-value=7.2 Score=31.63 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 217 (570)
+....+...+.+++...+..++..+.+.|++..-..+++- . +-+|.......+-.+ .+....+.++=-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~------Vi~DSk~lA~~LLs~--~~~~~~~~Ql~l 82 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H------VIPDSKPLACQLLSL--GNQYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c------ccCCcHHHHHHHHHh--HccChHHHHHHH
Confidence 4455555667777778888888888888887664444443 2 333433333222222 223333444433
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 218 KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL 291 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 291 (570)
.|..+ =...+..+++.+...|++-+|+++....... +......++.+..+.++...-..+++-...
T Consensus 83 DMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 83 DMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33332 0112555667777788888887777664322 222234455555566665554444444433
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.01 E-value=8 Score=31.99 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=59.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT----VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
...+...+++++|+.-++...... .|. .+-..|.......|.+++|+.+++...+.+. .......-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t--------~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elr 165 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQT--------KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELR 165 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccc--------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHh
Confidence 345667888888888888776532 221 2233456677778888888888877766533 22223344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQG 258 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~ 258 (570)
.+.+...|+-++|..-|++....+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 567778888888888888777764
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.97 E-value=38 Score=39.69 Aligned_cols=152 Identities=8% Similarity=-0.014 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (570)
.+..+-.+.+.+.+|...+++-.....+ .....+..+...|...++++....+...... +... ...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 5556777888999999999884211111 1233444555689999999988887764221 2222 334445677
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCCHHHHHH
Q 038914 276 NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI-LINGYCKTKDVEEGLN 354 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~ 354 (570)
.|++..|...|+++.+.+ ++...++..++......|.+...+...+...... .+....++. -+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3346677777777777888887777666554432 222222332 2334456677776666
Q ss_pred HHH
Q 038914 355 LYR 357 (570)
Q Consensus 355 ~~~ 357 (570)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 313
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.89 E-value=7.5 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 038914 252 IEMMDQGVQPNVVTFTVIMDELCKNGKMD 280 (570)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 280 (570)
..+.+.+++|+...+..++..+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33334445555555555555555555433
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.45 E-value=0.76 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
.+|..++..+...|++++|.+.|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999999875
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.24 E-value=12 Score=32.66 Aligned_cols=156 Identities=9% Similarity=0.086 Sum_probs=84.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHHhc
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNV---VTFTVIMDELCKNGKMDGASRLLELMILR---GV--KPDTSTYNTLIDGYCLT 311 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 311 (570)
+..+.++|+.-|++..+....... .+...++....+.+++++....+.+++.- .+ ..+....+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344678888888888775332222 33445677788888888888888777532 11 12334555666655555
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C-------hhhHHHHH
Q 038914 312 GKIDRARELFVSMESN-GCMHDVV----SYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----T-------VVTYHTLF 375 (570)
Q Consensus 312 ~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~-------~~~~~~l~ 375 (570)
.+.+.-...++.-++. .-..+.. +-..+...|...+.+.+..++++++...-... | ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555555555432221 0001111 22345666666666666666666665531110 1 13344455
Q ss_pred HHHhhcCCHHHHHHHHHHHH
Q 038914 376 LGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~ 395 (570)
+.|...++-.....++++..
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 55666666666666665544
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.05 E-value=19 Score=34.76 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038914 227 NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLID 306 (570)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 306 (570)
|.....+++..+.....+.-+..+..+|...| -+-..|..++.+|... ..+.-..+++++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455555566666666666666666665543 2445555566655555 345555566655554322 2222222333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhh
Q 038914 307 GYCLTGKIDRARELFVSMESNGCMH--D---VVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFE 380 (570)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 380 (570)
. ...++...+...|.++...-++. + ...|..+... -..+.+..+.+..++... |..--...+..+..-|..
T Consensus 141 ~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 K-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred H-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2 23355555555555554432110 1 1122222221 123444444444444432 222222333444445555
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 038914 381 VHQVEHALKLFDEMRRNH 398 (570)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~ 398 (570)
..++++|++++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 555666666665555543
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.79 E-value=20 Score=34.62 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=78.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID 411 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (570)
|....-+++..+..+-.+.-...+-.+|..-| -+-..+..++++|... ..+.-..+|+++.+..+ .|...-..++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455556666666555555556666665542 2445566666666655 44555666666655432 23333333443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-CCCCChhhHHHHHHHHHh
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYEL--N---IVSYNCLIDGLCKHGRLEIAWELFSSLPRV-GLMADVVTYNIMIHGLCN 485 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 485 (570)
.|.+ ++...+..+|.++...-++. + ...|..+... -..+.+..+++...+... |...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 56666666666555432211 0 1123332211 123444555554444432 111122333333344555
Q ss_pred cCChhHHHHHHHHHHHC
Q 038914 486 DGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 486 ~g~~~~A~~~~~~~~~~ 502 (570)
..++++|++++...++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55666666666655554
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.42 E-value=12 Score=31.38 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038914 162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGF 238 (570)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~ 238 (570)
+.+.|+ +.|...|-.+...+ .-.++.....|+..|. ..+.+++++++-+..+. +-.+|+..+.+|+..+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~------~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTP------ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCC------CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 445554 56677777666554 2344555555555444 56677777777766653 2355677777777777
Q ss_pred HhcCCHHHHH
Q 038914 239 CYANDWNEAK 248 (570)
Q Consensus 239 ~~~~~~~~a~ 248 (570)
.+.|+++.|-
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 7777777653
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.24 E-value=0.95 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 475 TYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
+++.++.+|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 320
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.21 E-value=0.79 Score=43.14 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=83.6
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
...+...++.+.++.|+..+.++++.+| ....-|..-+.++.+.+++..|+.=+.++++.. |. .+.+|.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldp--nca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~------~~K~Y~r 77 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDP--NCAIYFANRALAHLKVESFGGALHDALKAIELD--PT------YIKAYVR 77 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCC--cceeeechhhhhheeechhhhHHHHHHhhhhcC--ch------hhheeee
Confidence 3445566778899999999999999988 666666667788999999999999999999873 32 3466666
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 163 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (570)
.|...-+.+++.+|+..|+..... .|+-.-....+.-|-
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 666666667999999999988775 667666666665543
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.97 E-value=18 Score=32.96 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCY--AN----DWNEAKHLFIEMMDQ 257 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 257 (570)
++...+++.+.+.|++-+..+|.+..-.... .. ....+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666555554443222222 11 233455666666654
No 322
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.52 E-value=19 Score=32.76 Aligned_cols=130 Identities=13% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC-
Q 038914 244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK--NG----KMDGASRLLELMILRGV---KPDTSTYNTLIDGYCLTGK- 313 (570)
Q Consensus 244 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 313 (570)
+.+.+.+++.+.+.|...+..+|.+....... .. ....+..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888877766555543333222 12 23457778888877632 2233344444322 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914 314 ---IDRARELFVSMESNGCMHDV--VSYSILINGYCKTKD--VEEGLNLYRKMLSKGIRPTVVTYHTLF 375 (570)
Q Consensus 314 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (570)
.+.++.+|+.+.+.|+..+- .....++.......+ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34455566666665544322 222333322222222 335666666666666665555544443
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.43 E-value=11 Score=29.73 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
..++++++..+++.+.-.. |-....-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4667777777777666553 222222222334456677777777777777663
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=9.9 Score=37.33 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS 233 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (570)
..+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence 3445556666666666665541 22111 1123345667777666655442 4455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (570)
|.+.....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.. ..+|...|+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~A-----F~~~~l~g~ 736 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLA-----FLAYFLSGD 736 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chH-----HHHHHHcCC
Confidence 77777777777777776665433 344555566666655555555555554422 322 223445667
Q ss_pred HHHHHHHHHHH
Q 038914 314 IDRARELFVSM 324 (570)
Q Consensus 314 ~~~a~~~~~~~ 324 (570)
++++.+++..-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 76666665443
No 325
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.27 E-value=0.17 Score=45.04 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=68.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
+..|.++.|+..|..++..+| ++...|..-+.++.+.+++..|+.=+..++.. .||... ..-++.+ ....
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~-~ykfrg~-----A~rl 194 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAK-GYKFRGY-----AERL 194 (377)
T ss_pred hcCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--Cccccc-ccchhhH-----HHHH
Confidence 567889999999999999988 78888888888999999999999999988877 454421 1111111 1223
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcch
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFT 154 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (570)
.|++++|...+....+.++.+....
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHH
Confidence 4688888888888777766554443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.17 E-value=34 Score=35.23 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914 56 NDALCVFDYMLNMRPSRPP--VTSFNILFGCLA-KTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (570)
.-|++-++.+.+..+-+|. ..++..++..+. ...+++.|...+++.....-.++-..+....... ....+.+.+.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l--l~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL--LARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH--HHHHHHhcCH
Confidence 4667777777642221233 345677888776 6899999999999987664343322211111100 0122233334
Q ss_pred HHHHHHHHHHHHhcCCC----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH--h
Q 038914 133 IMEAAALFTKLRVFGCE----PDVFTYNTL-INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC--K 205 (570)
Q Consensus 133 ~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 205 (570)
.. |...+++.++.--. +-...+..+ +..+...+++..|++.++.+....... ..|-...+..++.+.. +
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLR 191 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhc
Confidence 44 88888887654211 112233333 233333479999999999987654210 1233444555555444 4
Q ss_pred cCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 038914 206 KGFVDKAKELFLKMKDEN---------INPNAVTYTSLICGF--CYANDWNEAKHLFIEMM 255 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 255 (570)
.+..+++.+.++++.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 465677777777663321 133456666666544 45677777777666554
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.73 E-value=0.83 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFK 99 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~ 99 (570)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678889999999999998876
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.69 E-value=0.96 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
|..++..|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.35 E-value=40 Score=35.17 Aligned_cols=231 Identities=11% Similarity=-0.004 Sum_probs=123.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 038914 163 CRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII-DGLCKKGFVDKAKELFLKMKDE----NINPNAVTYTSLIC 236 (570)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 236 (570)
....++++|..++.++...-+..+.....+ ...++.|- .+....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 457889999999988876542111000011 11333332 3345678899999988877654 22345666777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-----HHHHHHhcCChh--HHHHHHHHHHHCCC--C----CCHhhHHH
Q 038914 237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTV-----IMDELCKNGKMD--GASRLLELMILRGV--K----PDTSTYNT 303 (570)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~--~a~~~~~~~~~~~~--~----~~~~~~~~ 303 (570)
+..-.|++++|..+.....+..-.-+...+.. -...+..+|+.. +....+........ . +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88899999999999887766422223333222 233455677333 23333333322210 1 11234444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHH
Q 038914 304 LIDGYCLTG-KIDRARELFVSMESNGCMHDVV--SYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----TVVTYHTLFL 376 (570)
Q Consensus 304 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 376 (570)
++.++.+.. ...++...+.........+-.. .+..++.+....|+.++|...+.++......+ +..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555555411 1222222222222221111111 22367788889999999999999887753332 2222222222
Q ss_pred H--HhhcCCHHHHHHHHHH
Q 038914 377 G--LFEVHQVEHALKLFDE 393 (570)
Q Consensus 377 ~--~~~~~~~~~a~~~~~~ 393 (570)
. ....|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2357888777766655
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.33 E-value=6.7 Score=28.01 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 456 IAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554443
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.31 E-value=5.8 Score=33.08 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=44.8
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK---GLEPNFVIFNTLMLGFIRNNETSK 526 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~ 526 (570)
+.|+ +.|.+.|-.+...+.--++.....|+.-| ...+.+++..++.++.+. +-.+|+..+.+|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 55666666666554333444444444333 355677777777666653 224566777777777777777776
Q ss_pred HH
Q 038914 527 VI 528 (570)
Q Consensus 527 a~ 528 (570)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.89 E-value=9.7 Score=27.58 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914 386 HALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL 432 (570)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 432 (570)
+..+-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666666543
No 333
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.82 E-value=18 Score=34.62 Aligned_cols=107 Identities=20% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhhhh-------CCCCCCh---
Q 038914 412 GLCKNGYIVKAVELFRTLRIL---KYELN-----IVSYNCLIDGLCKHGRLEIAWELFSSLPR-------VGLMADV--- 473 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--- 473 (570)
.+.-.|++.+|.+++...--. |.... -..||.+.....+.|.+..+..+|.++.+ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 345568888888777654221 11111 12345555555666776666666666553 3444421
Q ss_pred --------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914 474 --------VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR 520 (570)
Q Consensus 474 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (570)
.+|| .+-.|...|++-.|.+.|.+.... +.-++..|..+..+|+.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1232 344577889999999988888775 56688889888888864
No 334
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.70 E-value=29 Score=32.77 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=64.8
Q ss_pred hcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC-----C------------C-CHhhHHHHHHHHH
Q 038914 67 NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST-------GL-----F------------P-DLYAYNILINCFL 121 (570)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-----~------------~-~~~~~~~~l~~~~ 121 (570)
+..| ..+.++..+...+.++|+.+.|.++.++++-. .+ . + |...|..+....
T Consensus 34 ~~~P--yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i- 110 (360)
T PF04910_consen 34 QKNP--YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI- 110 (360)
T ss_pred HHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH-
Confidence 4556 88999999999999999999999988887421 11 0 1 111122222211
Q ss_pred hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 038914 122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGL-CRTGHTIVALNLFEEMAN 180 (570)
Q Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 180 (570)
..+.+.|-+..|+++..-+...++..|+......|..| .+.++++--+++.+....
T Consensus 111 ---~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 ---QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ---HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 23345567777777666666665444555555555554 355666666666665443
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.64 E-value=4 Score=25.54 Aligned_cols=40 Identities=18% Similarity=0.029 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN 118 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 118 (570)
..+.++.++.+.|++++|++..+.+++. .|+......+-.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 4566778889999999999999999987 787765554443
No 336
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=13 Score=33.37 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
-++++++.++..-+..|+-||..+++.+++.+.+.+++.+|.++...|+.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34555555555555555566666666666666666666665555555443
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.80 E-value=2 Score=25.59 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=13.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038914 514 LMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666654
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.36 E-value=1.6 Score=22.97 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
.+|..++.++...|+++.|...|++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778899999999999999999998865
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.33 E-value=2.1 Score=25.52 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914 79 NILFGCLAKTKHYDTVLSLFKRLNSTG 105 (570)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (570)
..++.+|...|+.+.|++++++.+..|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999999754
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.20 E-value=52 Score=34.42 Aligned_cols=306 Identities=15% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCCCCCcchhhhHHHhhhhhcc-----hhhHHHHHHHHhhhcCCCC------CCCCChhHHHHHHHHHHhcCCCCCCHHh
Q 038914 9 NEPSYPTTTAKLKESLRLTVKD-----RASLETFLRERFKSSGEGD------ITTITPNDALCVFDYMLNMRPSRPPVTS 77 (570)
Q Consensus 9 ~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 77 (570)
..+.|-.....+.+-++..+.. +++++-...+-+..+|... +..|+++-|..++++....-+...+...
T Consensus 319 d~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl 398 (894)
T COG2909 319 DEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL 398 (894)
T ss_pred CCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH
Confidence 4667777777777665554444 3455555555566666433 6789999998888876221111111111
Q ss_pred H-----------------HHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CCcchhhCCHHHHH
Q 038914 78 F-----------------NILFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN-GSSLCVESRIMEAA 137 (570)
Q Consensus 78 ~-----------------~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~A~ 137 (570)
. ..+.. ....+.++.+|..+..++...-..|+......+...+... +......|++++|.
T Consensus 399 l~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~ 478 (894)
T COG2909 399 LLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAE 478 (894)
T ss_pred HHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 1 11222 3456789999999998887653333322111111111000 01223368999999
Q ss_pred HHHHHHHhcC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH-----HHHHHHHhcCC
Q 038914 138 ALFTKLRVFG----CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT-----TIIDGLCKKGF 208 (570)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~ 208 (570)
++-+.....= ..+....+..+..+..-.|++++|..+.....+.. ..-++..+. .-...+..+|+
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a------~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA------RQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH------HHcccHHHHHHHHHHHHHHHHHhhH
Confidence 9988877541 22344556677777788899999999988887753 222333222 22345667784
Q ss_pred HHH--HHHHHHHHHhCC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhH--HHHHHHHH
Q 038914 209 VDK--AKELFLKMKDEN---IN---PNAVTYTSLICGFCYANDWNEAKHLFIEMM----DQGVQPNVVTF--TVIMDELC 274 (570)
Q Consensus 209 ~~~--a~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~--~~l~~~~~ 274 (570)
... .+..|....... .+ +-..++..+..++.+ .+.+..-...-. .....|-.... ..++....
T Consensus 553 ~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 553 VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 333 333343333221 11 122334444444444 333332222222 22122222222 36777888
Q ss_pred hcCChhHHHHHHHHHHHCCCCC----CHhhHHHH--HHHHHhcCCHHHHHHHHHH
Q 038914 275 KNGKMDGASRLLELMILRGVKP----DTSTYNTL--IDGYCLTGKIDRARELFVS 323 (570)
Q Consensus 275 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~~~~~~~a~~~~~~ 323 (570)
..|++++|...++++......+ +....... +......|+...+..+..+
T Consensus 630 ~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 630 LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 8999999999998887643222 22121222 2334567787777776655
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.12 E-value=89 Score=36.98 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914 233 SLICGFCYANDWNEAKHLFIEM----MDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 233 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (570)
.+..+-.+.+.+.+|.-.++.- .+. .-....+..+...|...++++....+...-.. +...+ .-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence 4555667888999999998883 221 11223344555599999999998888775221 22222 334456
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhhcCCHHHH
Q 038914 309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVT-YHTLFLGLFEVHQVEHA 387 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 387 (570)
...|+++.|...|+.+.+.+ ++....++.++......|.++..+...+-.... ..+.... .+.-..+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999999886 334677888887777788888877766555443 1111211 22223333566777766
Q ss_pred HHHHH
Q 038914 388 LKLFD 392 (570)
Q Consensus 388 ~~~~~ 392 (570)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66544
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.96 E-value=21 Score=29.66 Aligned_cols=90 Identities=6% Similarity=-0.051 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 444 LIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-----NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
+...+...|++++|...++..... |....+ -.|.+.....|.+++|+..+......+. .......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345567778888888888877653 222222 2355667778888888888776655321 222234445678
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 038914 519 IRNNETSKVIELLHRMDMRN 538 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~ 538 (570)
...|+.++|+.-|++.+..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88888888888888888654
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.73 E-value=1.8 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 512 NTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
..+..++.+.|++++|.+.++++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555566666666666666654
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.55 E-value=12 Score=26.65 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhc
Q 038914 59 LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQN 123 (570)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (570)
+..++..++.+| .+..+...++..+...|++++|++.+-.+++..... +...-..++..+.-.
T Consensus 8 ~~al~~~~a~~P--~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 8 IAALEAALAANP--DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 456777778888 888999999999999999999999999999885443 233334444444433
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.13 E-value=38 Score=31.88 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=29.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
..+..+.|+++...+........ .++...+..+... +.|+++++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45666778877744444443321 1233344444333 67777777777776654
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=20 Score=32.18 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
+.++++.++..=+.-|+.||..++..++..+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.88 E-value=56 Score=33.69 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=107.4
Q ss_pred HHHHHHHHHH-hcCCCCCc--chHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccCCCh-----hhHHHHHHHHHh
Q 038914 135 EAAALFTKLR-VFGCEPDV--FTYNTLINGLC-RTGHTIVALNLFEEMANGNGEIGVVCKPDT-----VTYTTIIDGLCK 205 (570)
Q Consensus 135 ~A~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 205 (570)
.|++.++.+. ...++|.. .++..++..+. ...+++.|+..+++...... .++. .....++..+.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHh
Confidence 4666666666 33333333 34556667665 67899999999998866541 2221 223456677777
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHH--h
Q 038914 206 KGFVDKAKELFLKMKDE----NINPNAVTYTSL-ICGFCYANDWNEAKHLFIEMMDQG---VQPNVVTFTVIMDELC--K 275 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~ 275 (570)
.+... |...+++.++. +..+-...+..+ +..+...++...|.+.++.+.... ..|...++..++.+.. .
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 77666 88888886653 111222333333 233333479999999998887642 2333344444444433 4
Q ss_pred cCChhHHHHHHHHHHHCCC---------CCCHhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038914 276 NGKMDGASRLLELMILRGV---------KPDTSTYNTLIDGY--CLTGKIDRARELFVSM 324 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 324 (570)
.+..+++.+.++++..... .|...++..+++.+ ...|+++.+...++++
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777777777643211 23345666666544 4667777776665554
No 348
>PRK09687 putative lyase; Provisional
Probab=83.28 E-value=35 Score=30.86 Aligned_cols=176 Identities=9% Similarity=0.013 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHH
Q 038914 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW----NEAKHLFIEMMDQGVQPNVVTFT 267 (570)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 267 (570)
|.......+..+...|. +++...+..+... +|...-...+.++...|+. .++...+..+... .++..+..
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 34444444444544443 2233333333322 2444444455555555542 3455555544322 23444443
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 268 VIMDELCKNGKM-----DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING 342 (570)
Q Consensus 268 ~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (570)
..+.++...+.. ..+...+..+.. .++..+-...+.++...++ ..+...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444333211 112222222222 2233444444555555544 3344444444432 233333333333
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC
Q 038914 343 YCKTK-DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ 383 (570)
Q Consensus 343 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (570)
+...+ +...+...+..+... ++...-...+.++.+.++
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC
Confidence 43332 123444444444432 244444444455555554
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.38 E-value=16 Score=26.47 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=18.9
Q ss_pred HHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 457 AWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 457 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444455555555555555555555555544443
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.08 E-value=13 Score=31.36 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN--INPNAVTYTS 233 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ 233 (570)
+..++.+.+.++..+|+.+.+.-.+.. +.|...-..+++.++-.|++++|..-++-.-... ..+-...|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 344555666667777777666666653 3445556666666777777777766555444321 2223444555
Q ss_pred HHHH
Q 038914 234 LICG 237 (570)
Q Consensus 234 l~~~ 237 (570)
++.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 4443
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.07 E-value=4.4 Score=29.26 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=36.7
Q ss_pred CCCChhHHHHHHHHHH----hcCCCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 51 TTITPNDALCVFDYML----NMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~----~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
+.|++.+|++.+.+.. ...... .-..+...++......|++++|+..++++++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4678888866555544 333211 11234455777888999999999999999876
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.05 E-value=28 Score=30.84 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----
Q 038914 340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK---- 415 (570)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 415 (570)
|++++..+++.+++...-+..+.--+.-.......|-.|.+.+....+.++-......--.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677777777777665555444311222344455556667777777777776666553222222335555554443
Q ss_pred -cCCHHHHHHHH
Q 038914 416 -NGYIVKAVELF 426 (570)
Q Consensus 416 -~~~~~~a~~~~ 426 (570)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777776665
No 353
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.16 E-value=47 Score=30.85 Aligned_cols=118 Identities=8% Similarity=-0.041 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh---cCChhHHHHHH
Q 038914 420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN---DGQMDKAHGLF 496 (570)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 496 (570)
+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44456666666664 4556666666777777777777777777777642 2244556555554433 22455555555
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914 497 LDMEAK------GL------EPN-----FVIFNTLMLGFIRNNETSKVIELLHRMDMRNV 539 (570)
Q Consensus 497 ~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (570)
.+.+.. +. .++ ...+..+...+..+|..+.|..+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554331 11 011 11223333344568999999999998887665
No 354
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.01 E-value=36 Score=29.42 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=80.5
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII 200 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 200 (570)
.|.-+....+++.|+..|.+.+.. .|++ .-|..-+..+.+..+++.+..-..+..+.. |+ +.....+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~vk~h~flg 85 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNLVKAHYFLG 85 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHHHHHHHHHH
Confidence 344455567899999988888876 5565 446667888888999999988888888753 44 44556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 201 DGLCKKGFVDKAKELFLKMKDE----NINPNAVTYTSLICGFCYANDWNEAKHLFIE 253 (570)
Q Consensus 201 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 253 (570)
.+......+++|+..+.+.... .+.+-......|..+--..=...+..++.++
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7778888899999988887443 2334444555555443333333444444433
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.00 E-value=16 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 038914 265 TFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 265 ~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
+-..++..++-.|++++|..-++
T Consensus 37 ~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 37 GRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred chhHHHHHHhhcchHHHHHHHHH
Confidence 33334444444444444443333
No 356
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.91 E-value=50 Score=31.04 Aligned_cols=64 Identities=17% Similarity=0.060 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL---NIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
..++..++..+.+.|.++.|...+..+...+... .+.+...-+......|+..+|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666666655432111 223333334445556666666666555544
No 357
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=13 Score=31.93 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=63.1
Q ss_pred HHHhhhcCCCCCCCCChhHHHHHHHHHHh--------cCCCC--------CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038914 39 RERFKSSGEGDITTITPNDALCVFDYMLN--------MRPSR--------PPVTSFNILFGCLAKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (570)
.......|+.+++.|++.+|..-|+.++. ..|.. .....+....+++...|++-++++...+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566788999999999999888887752 23311 112244556667777788888888877777
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 103 STGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
+. .|+.. .+|.+.++.....-+.++|..-|..+++.
T Consensus 258 ~~--~~~nv------KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--HPGNV------KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--CCchH------HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 76 33321 23333333333345777777777777765
No 358
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=6.1 Score=35.57 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHhhhcCCCCCCCCChhHHHHHHHHHHhc---CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 38 LRERFKSSGEGDITTITPNDALCVFDYMLNM---RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 38 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
+.+.+...|.-..+..+|..|...|...++. +| .-+...|+.-+.+....|++..|+.=...++..
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466677777777777777777777777754 33 344556777777777777777777777777765
No 359
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.15 E-value=46 Score=30.17 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNA---VTYTSLICGFCYANDWNEAKHLFIEM 254 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 254 (570)
|..+..+.|+..+|.+.|+.+.+. + |-. .....|+.++....-+.++..++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke-~-pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE-F-PLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555555555544432 1 111 12223444444444444444444443
No 360
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.71 E-value=45 Score=29.77 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN----STGLFPDLYAYNILINCFLQNGSSL 127 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (570)
++++++|++++.... ..+.+.|++..|-++..-++ +.+...+......++..+...+.
T Consensus 3 ~kky~eAidLL~~Ga----------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~-- 64 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGA----------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP-- 64 (260)
T ss_dssp TT-HHHHHHHHHHHH----------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T--
T ss_pred cccHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--
Confidence 567777777665442 23445555555444333332 23445555554555554444331
Q ss_pred hhhCCHHHHHHHHHHHHhc---C--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 128 CVESRIMEAAALFTKLRVF---G--CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
.-.+-.++.+++++. + ..-++.....+...+.+.|++.+|...|-... .++...+..++..
T Consensus 65 ----~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----------~~~~~~~~~ll~~ 130 (260)
T PF04190_consen 65 ----EEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----------DPSAFAYVMLLEE 130 (260)
T ss_dssp ----T-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----------HHHHHHHHHHHHH
T ss_pred ----CcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----------ChhHHHHHHHHHH
Confidence 111112222222221 1 12245567777788888888888776654321 1223333234444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+...|...++--. ....+-.|...++...|...++...+.
T Consensus 131 ~~~~~~~~e~dlf---------------i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 131 WSTKGYPSEADLF---------------IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTSS--HHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchhHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4434433332111 112233456677888888777666543
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.94 E-value=84 Score=32.46 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGF 238 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (570)
+.-+.+.+.+++|+.+.+.....-+. ..-......++..+.-.|++++|-...-.|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 45567788999999887776543210 002456778888899999999999999999875 677777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914 239 CYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275 (570)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (570)
...++......++ .......+...|..++..+..
T Consensus 434 ~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 7777665543332 222222456677777777666
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.80 E-value=15 Score=36.03 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=62.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
...|++..|.+-+..+....| .....+...|+..+.+.|..-.|-.++.+.+... .....++..+- .++..
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p-~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g-------~~~l~ 688 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAP-LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG-------NAYLA 688 (886)
T ss_pred eecCCcHHHHHHHHHHhccCh-hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc-------hhHHH
Confidence 456777777777777777666 3445556667777777777777777777766553 22233333322 33333
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 163 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (570)
..+++.|++.|.+..+.. +.+...-+.|...-|
T Consensus 689 l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 457777777777777653 224455555554433
No 363
>PRK10941 hypothetical protein; Provisional
Probab=78.39 E-value=8.9 Score=34.17 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=55.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 33 SLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
+....+.+.....-..+.+.++++.|+...+.++...| .++.-+.--+-.|.+.|.+..|..=++..+..
T Consensus 175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33444444444444445678899999999999999999 77788888888999999999999999998876
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.37 E-value=50 Score=29.53 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 101 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 101 (570)
..|+++|-.++.... ..+ .-..++..+....+..+|...+...
T Consensus 150 ~KA~ELFayLv~hkg--k~v-~~~~~ie~lwpe~D~kka~s~lhTt 192 (361)
T COG3947 150 RKALELFAYLVEHKG--KEV-TSWEAIEALWPEKDEKKASSLLHTT 192 (361)
T ss_pred hHHHHHHHHHHHhcC--Ccc-cHhHHHHHHccccchhhHHHHHHHH
Confidence 689999999887764 222 2334556666666666665555443
No 365
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.06 E-value=23 Score=25.48 Aligned_cols=45 Identities=4% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 386 HALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
++.+-++.+...+..|++.+..+.+++|.+.+++..|.++|+.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555666666666666666666666666665554
No 366
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.13 E-value=1.1 Score=35.62 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=42.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK 278 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (570)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555666666666666665544445666666666666666555555555411 11222334445555555
Q ss_pred hhHHHHHHHH
Q 038914 279 MDGASRLLEL 288 (570)
Q Consensus 279 ~~~a~~~~~~ 288 (570)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.93 E-value=55 Score=29.28 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
++.....|..+|.+.+|.++.+..+..+ +.+...+-.++..++..|+--.|.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666667777776666666642 3345556666666666666666666655553
No 368
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.85 E-value=1.1 Score=35.48 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFV 322 (570)
Q Consensus 270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (570)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544333344555555555555554444444443
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=49 Score=28.53 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=30.2
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 158 LINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 158 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+...|-.. .++++|+..|+..-.-...... ...-...+.-+...-...+++.+|+++|+++...
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332 5566666666665443210000 0001122333344445567777777777776654
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.32 E-value=7.5 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFG 83 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (570)
|+++.|..+|++++...| .+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~--~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP--KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC--CChHHHHHHHH
Confidence 456778888888887766 66677766554
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.85 E-value=18 Score=35.54 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038914 449 CKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVI 528 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (570)
...|+...|...+..+......-.......|.....+.|...+|-.++.+.+... ...+.++..+..++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4468888888888777653211123445667777777788888888887777653 345567777788888888888888
Q ss_pred HHHHHHHhC
Q 038914 529 ELLHRMDMR 537 (570)
Q Consensus 529 ~~~~~~~~~ 537 (570)
+.+++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 888888765
No 372
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.82 E-value=63 Score=28.96 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038914 365 RPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN-HVAANTYIYTTFIDGLCKNGYIVKAVELFR 427 (570)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 427 (570)
.++..+...++..+++.++|....++++..... +...|...|..++......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344555555566666666666666665554433 344455556666666666666554444443
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.58 E-value=85 Score=30.29 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=84.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
.-....||.-.|-+-+...+.+. +.++.............|.++.+.+.+...... +.....+...+++...
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 33445677777766666666554 334444444455667789999998888766543 3335667788888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG 293 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 293 (570)
..|+|++|..+-+.|....++ +........-.....|-++++.-.|+++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 899999999988888876555 44444444444456677888888888887654
No 374
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.51 E-value=88 Score=30.47 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCChhh-HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH---hcCChhHHHHHHHHHHHC-CCCCCHH
Q 038914 435 ELNIVS-YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC---NDGQMDKAHGLFLDMEAK-GLEPNFV 509 (570)
Q Consensus 435 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~-~~~p~~~ 509 (570)
.++..+ -+.+++-+.+.|-..+|..++..+... .+|+...|..+++.-. .+| ..-+..+++.|... | -|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 344443 456777778888888899988888775 3556677777766432 233 66777788877654 4 5777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 510 IFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
.|...+..-...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 787777666678888877777776653
No 375
>PRK10941 hypothetical protein; Provisional
Probab=74.04 E-value=60 Score=29.07 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR-NVMPDASTLSIVVDLL 553 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 553 (570)
.+.+-.+|.+.++++.|+++.+.++.. .| ++.-+.--...|.+.|.+..|..=++..++. .-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344555666777777777777777663 34 3444555556677777777777777776632 3345555665555555
Q ss_pred Hcc
Q 038914 554 VKN 556 (570)
Q Consensus 554 ~~~ 556 (570)
.+.
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 443
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.70 E-value=72 Score=29.05 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----C--CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----c
Q 038914 418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH-----G--RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----D 486 (570)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 486 (570)
+..+|..+++++.+.|..+.......+...|..- - +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666666555222112223333333322 1 2235777777766654 34444445555433 3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 487 GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN---------------ETSKVIELLHRMDMRNVMPDASTLS 547 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~p~~~~~~ 547 (570)
.+..+|...|.+..+.|. ......+. .+...| +...|...+......+.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 367778888887777653 33333333 344333 7778888888888776555555555
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.69 E-value=70 Score=28.49 Aligned_cols=124 Identities=9% Similarity=-0.006 Sum_probs=67.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038914 163 CRTGHTIVALNLFEEMANGNGEIGVVCKPD-------TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI 235 (570)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 235 (570)
.-..||..|++..++..+.-......-.++ ......=|++++..+++.+++...-+..+.--+..+.....-|
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI 125 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 334667777777666654320000000011 1112333667777888888877766655443233344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-----HhcCChhHHHHHH
Q 038914 236 CGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL-----CKNGKMDGASRLL 286 (570)
Q Consensus 236 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 286 (570)
-.|.+.+....+.++-....+..-.-+...|..++..| .=.|.+++|+++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56778888887777777776643222333455555444 3467777777765
No 378
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.44 E-value=41 Score=26.08 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHh-cCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 038914 52 TITPNDALCVFDYMLN-MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 111 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 111 (570)
..+..+.+.+|+.+.+ ..| .......+-|+.++.+.++|+.++++.+.+++. .|+..
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~-~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHP-ERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCc-ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 4567888999999997 444 455566777888999999999999999999987 66654
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.12 E-value=39 Score=25.74 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=24.9
Q ss_pred HHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 457 AWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 457 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
..+-+..+....+.|++......+++|.+.+++..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444455555665555566666666666666666555544
No 380
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.99 E-value=1.2e+02 Score=30.95 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (570)
+.-|. .+..+.-+|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 55565 6777788899999999985444
No 381
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.85 E-value=79 Score=28.76 Aligned_cols=150 Identities=14% Similarity=0.012 Sum_probs=78.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (570)
..+.+..+...+......+ +......+...|.. ..+..+|..+|+.....+ .......|...|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---------~~~a~~~lg~~~~ 120 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---------LAEALFNLGLMYA 120 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---------cHHHHHhHHHHHh
Confidence 3457777888887776533 22344445554443 345777888888666544 3444555555555
Q ss_pred h----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038914 205 K----KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAN-------DWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL 273 (570)
Q Consensus 205 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (570)
. ..+..+|...|++..+.|..+...+...+...|..-. +...|...|.++...+ +......+...|
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4 3467788888888777765433222333333333221 1224555555555543 223333333333
Q ss_pred Hh----cCChhHHHHHHHHHHHCC
Q 038914 274 CK----NGKMDGASRLLELMILRG 293 (570)
Q Consensus 274 ~~----~g~~~~a~~~~~~~~~~~ 293 (570)
.. ..++.+|...|....+.|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCC
Confidence 22 124455555555555544
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.72 E-value=15 Score=25.16 Aligned_cols=47 Identities=9% Similarity=0.151 Sum_probs=25.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 485 NDGQMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
...+.++|+..|+..++.-..+. ..++..++.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665422221 224455556666666666665543
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.39 E-value=21 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038914 514 LMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+..++.+.|++++|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555666666665555553
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.15 E-value=1.5e+02 Score=31.11 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGC---LAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
.|+++.-...-..+...-| .++..|...+.. ....+...++..+|++++.. .-+...|..++......+..+.
T Consensus 126 ~~dl~kl~~ar~~~~~~~p--l~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~e~~~y~~~~~~~~~ 201 (881)
T KOG0128|consen 126 LGDLEKLRQARLEMSEIAP--LPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWEEVVNYLVGFGNVAK 201 (881)
T ss_pred hcchHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHHHHHHHHHhcccccc
Confidence 3444433333333333333 444444443332 23345666666666666655 2334445555555555444444
Q ss_pred hhCCHHHHHHHHHHHHh
Q 038914 129 VESRIMEAAALFTKLRV 145 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~ 145 (570)
+.++++....+|++.+.
T Consensus 202 ~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 202 KSEDYKKERSVFERALR 218 (881)
T ss_pred ccccchhhhHHHHHHHh
Confidence 55566666666666554
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.52 E-value=84 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.030 Sum_probs=31.6
Q ss_pred cCCCCCcchHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 146 FGCEPDVFTYNTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL 217 (570)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 217 (570)
.+.+.+......++..+...+.-+ +-.++.+.+.+.. ..+.....|......+...|.+.|++.+|+.-|-
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344445544455555555443221 2223333333221 0011123456777778888888888777776553
No 386
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.39 E-value=97 Score=28.78 Aligned_cols=99 Identities=9% Similarity=-0.029 Sum_probs=65.9
Q ss_pred CCCcchHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038914 149 EPDVFTYNTLINGLCRTGH------------TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELF 216 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 216 (570)
+-|+.+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4467788887765433211 355677888888875 456777788888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038914 217 LKMKDENINPNAVTYTSLICGFCY---ANDWNEAKHLFIEMM 255 (570)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 255 (570)
+++..... -+...|...+..... .-.+.....+|.+.+
T Consensus 89 e~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 89 EELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88887632 266777777665444 224556666655544
No 387
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.27 E-value=1.4e+02 Score=30.74 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF-------VDKAKELFLKMKDE 222 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~ 222 (570)
+..+|- +|--|.++|++++|.++....... .......+...+..|....+ -++...-|.+....
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 445565 666788999999999999555443 34455677777787776532 23555556655544
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.83 E-value=14 Score=24.15 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 507 NFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
|..-.-.++.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455666677777777777666665
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.26 E-value=8.3 Score=26.39 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=37.4
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHH
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLF 98 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 98 (570)
.|.-++...+.+.|+..+..+++..+.+++ ..++..++.++...|++++++++-
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677889999999999987663222 223455667888888888877654
No 390
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=67.91 E-value=1e+02 Score=28.36 Aligned_cols=168 Identities=17% Similarity=0.156 Sum_probs=81.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHH------------------------HHhcCChHHHHHHHHHH
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGC------------------------LAKTKHYDTVLSLFKRL 101 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------~~~~g~~~~A~~~~~~~ 101 (570)
|....+.+--++|+.+=+-....-|..|....+..|+.. +...+-.+++..+++++
T Consensus 203 G~~~~ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA 282 (415)
T COG4941 203 GPEPTRADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRA 282 (415)
T ss_pred CCCcccchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHH
Confidence 333444445577777777777766633443333333321 11122345566666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914 102 NSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 181 (570)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (570)
...+. |........|.++.... .....-++.....+|+-+......| +++.|.- .+..+..-.+.++.+.+-+...
T Consensus 283 ~~~~~-pGPYqlqAAIaa~HA~a-~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRA-VAla~~~Gp~agLa~ve~L~~~ 358 (415)
T COG4941 283 LASRR-PGPYQLQAAIAALHARA-RRAEDTDWPAIDALYDALEQAAPSP-VVTLNRA-VALAMREGPAAGLAMVEALLAR 358 (415)
T ss_pred HHcCC-CChHHHHHHHHHHHHhh-cccCCCChHHHHHHHHHHHHhCCCC-eEeehHH-HHHHHhhhHHhHHHHHHHhhcc
Confidence 66553 66666665555553322 1222335555566666555543221 2223322 2233333455566666665554
Q ss_pred CCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 182 NGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+. ...-...+..-...+.+.|+.++|...|++....
T Consensus 359 ~~-----L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 359 PR-----LDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred cc-----cccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 31 1111223334455566666666666666666553
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.85 E-value=15 Score=35.02 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=45.4
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038914 377 GLFEVHQVEHALKLFDEMRRNHVAAN-TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLE 455 (570)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (570)
.+...+.++.|..++..+++. .|+ ...+..-..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 344455555555555555543 222 2222222244555555555555555555443 222223333334444455555
Q ss_pred HHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 456 IAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
+|...|+.... +.|+..-+...+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 55555555544 3444444433333
No 392
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.44 E-value=4 Score=36.83 Aligned_cols=95 Identities=14% Similarity=-0.026 Sum_probs=66.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHH
Q 038914 414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 492 (570)
...|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++-++.... +.||. ..|-.-..+..-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34577888888888887776 66666777777778888888888888877776 34554 3444444555567888888
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 038914 493 HGLFLDMEAKGLEPNFVIF 511 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~ 511 (570)
...++...+.++.+....|
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 8888888887666554443
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.34 E-value=1.8e+02 Score=31.15 Aligned_cols=187 Identities=15% Similarity=0.041 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHhhcCCH--HHHHHHHHHHHhCCCCcCHHHHH--
Q 038914 335 SYSILINGYCKTKDVEEGLNLYRKMLSKG---IRPTVVTYHTLFLGLFEVHQV--EHALKLFDEMRRNHVAANTYIYT-- 407 (570)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 407 (570)
-|..|+..|...|+.++|+++|.+..+.. ..--...+..++..+.+.+.. +-.+++-.-..+.+......++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888889999999999999999887732 000112233344444444333 33333333333221111011111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--------HHHHHHH-----HHhh
Q 038914 408 ----------TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGR--------LEIAWEL-----FSSL 464 (570)
Q Consensus 408 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~-----~~~~ 464 (570)
..+-.|......+-+..+++.+....-.++....+.++..|...=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1222355667788888899888776656677777777777754211 1222222 1111
Q ss_pred hh--CCCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHhc
Q 038914 465 PR--VGLMA--------DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK-------------GLEPNFVIFNTLMLGFIRN 521 (570)
Q Consensus 465 ~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 521 (570)
.+ ....| ....|....-.+.+.|+.++|+.++-..+.. ...++...|..++..+...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 01111 1222333333455778888888776554431 1233666777777666654
No 394
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=1.2e+02 Score=28.76 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
...|.+++.|...+.++.|..+..+.. .|+...-+...+.....|.+...++++..|.+.|-+....
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 345667777777777777777665544 4544443333444445555666677777777777777665
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.46 E-value=50 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=21.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 496 FLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
+..+....+-|++......+++|.+-+++.-|.++++-+.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444455555555555555555555555555555554
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.44 E-value=50 Score=23.75 Aligned_cols=52 Identities=10% Similarity=-0.058 Sum_probs=28.6
Q ss_pred HhcCChhHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 484 CNDGQMDKAHGLFLDMEAK----GLEP----NFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
.+.|++.+|.+.+.+..+. +... -......+.......|++++|...+++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566666665555544332 1111 01222334455667788888888888776
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.14 E-value=24 Score=23.01 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
|-.-...++.+|...|++++|.+.+..+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556666666666666666655543
No 398
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.95 E-value=55 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 038914 55 PNDALCVFDYMLNMRPSR----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL 106 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (570)
+..|+..|..+......+ ........++....+.|++++|.+.|.+++..+-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 567888888887654321 2235667788899999999999999999998743
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.87 E-value=96 Score=26.70 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCChhH-------HHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914 475 TYNIMIHGLCNDGQMDK-------AHGLFLDMEAKGLEP----N-FVIFNTLMLGFIRNNETSKVIELLHRMDMRN 538 (570)
Q Consensus 475 ~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (570)
.+.-+.+.|...|+.+. |.+.|.+..+..-.| + ......+.....+.|++++|.+++.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555666666666433 444444444332111 2 2233445566778888888888888888543
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.76 E-value=2e+02 Score=29.96 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 227 NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
+...-+....+....|+.++|......+-..|.. ....+..++..+.+.|.+..
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 4444455555566666666555555555444322 34455556666655554433
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.53 E-value=1.2e+02 Score=27.34 Aligned_cols=119 Identities=9% Similarity=0.180 Sum_probs=69.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh-cCC-HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 038914 164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK-KGF-VDKAKELFLKMKDE-NINPNAVTYTSLICGFCY 240 (570)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 240 (570)
.+....+|+.+|+.....+. +-.|..+...++..... .+. ...-.++.+-+... +-.++..+...++..++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~-----Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~ 214 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDES-----IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAE 214 (292)
T ss_pred hhHHHHHHHHHhhccCcccc-----eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHh
Confidence 34456677777774322110 34566666666666655 221 22222233333221 334566677777777888
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 241 ANDWNEAKHLFIEMMDQ-GVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 241 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
.++|..-.++++..... +..-|...|..+++.-.+.|+..-..++.+
T Consensus 215 ~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 215 SRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88888877777776654 445566777777777777777665555544
No 402
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.32 E-value=2e+02 Score=29.93 Aligned_cols=51 Identities=14% Similarity=-0.002 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (570)
.+.+++|+.+-.......|...-...+..++..+...|++++|-...-.|.
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344555555444443332211122344455555555555555555555554
No 403
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.13 E-value=59 Score=23.68 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHhh
Q 038914 447 GLCKHGRLEIAWELFSSL 464 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~ 464 (570)
.+...|++++|..+.+..
T Consensus 48 SLmNrG~Yq~Al~l~~~~ 65 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL 65 (115)
T ss_pred HHHccchHHHHHHhcCCC
Confidence 344455555555544443
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.09 E-value=1.6e+02 Score=28.79 Aligned_cols=408 Identities=13% Similarity=0.084 Sum_probs=193.1
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc-CCHHHHHH
Q 038914 136 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK-GFVDKAKE 214 (570)
Q Consensus 136 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~ 214 (570)
...+|+....+ +..|+..|...+..+.+.+.+.+.-.+|..|...+ +.++..|..-..-.... .+++.|..
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-------p~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-------PNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-------CCCchhHHhhhhhHHhhccchHHHHH
Confidence 44555555544 34588899999998888888999999999999876 33445554444433333 34899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH---HHh-c-------C-CHHHH-HHHHHHHHH-CCCCCChhhHHHH---H--HHHHh
Q 038914 215 LFLKMKDENINPNAVTYTSLICG---FCY-A-------N-DWNEA-KHLFIEMMD-QGVQPNVVTFTVI---M--DELCK 275 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~---~~~-~-------~-~~~~a-~~~~~~~~~-~~~~~~~~~~~~l---~--~~~~~ 275 (570)
+|.+.+..+.. ++..|....+. |.. . | +..+- .++-..-.. ....++....... + ...-.
T Consensus 162 lflrgLR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~ 240 (568)
T KOG2396|consen 162 LFLRGLRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEK 240 (568)
T ss_pred HHHHHhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHH
Confidence 99888876322 34444332221 110 0 0 00000 000000000 0001111100000 0 00000
Q ss_pred cCChhHHH-HHHHHHHHCCCCCCHhhHHHHHH----HHHh---------------cCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914 276 NGKMDGAS-RLLELMILRGVKPDTSTYNTLID----GYCL---------------TGKIDRARELFVSMESNGCMHDVVS 335 (570)
Q Consensus 276 ~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (570)
.....+.. .+.+.+.. +.+-++.++..+.. .+.. ..+.+....+|+..... -++...
T Consensus 241 ~d~~kel~k~i~d~~~~-~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 241 FDFLKELQKNIIDDLQS-KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHHHHHHHhc-cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 01111111 11222222 22223333322221 1111 01123344555555543 345555
Q ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHhCC-CCCC-hhhHHHHHHHHhhcCCHH-HHHHHHHHHHhCCCCcCHHHH
Q 038914 336 YSILINGYCKTK------DVEEGLNLYRKMLSKG-IRPT-VVTYHTLFLGLFEVHQVE-HALKLFDEMRRNHVAANTYIY 406 (570)
Q Consensus 336 ~~~l~~~~~~~~------~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 406 (570)
|+..|..|...- ....-..+++.....+ ..++ ...|..+...+....... -|..+..+. +..+...+
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 666666554432 2334445555554432 2222 233444444444333322 222332222 33445555
Q ss_pred HHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHH-H-HHHHhhhhCCCCCChhhH-HHHH
Q 038914 407 TTFIDGLCKN-GYIVKA-VELFRTLRILKYELNIVSYNCLIDGLCKHGR-LEIA-W-ELFSSLPRVGLMADVVTY-NIMI 480 (570)
Q Consensus 407 ~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~~~~~~~~~~~~~~-~~l~ 480 (570)
..-+...... .+++-- ...+..+...-..+....|+... .|+ .+.. + .++..+... ..|+..++ +.++
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l 467 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHH
Confidence 4444444322 122211 12223333221122233333332 222 2211 1 122222222 34565554 5677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccC
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI--RNNETSKVIELLHRMD-MRNVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g 557 (570)
..+...|-..+|...+..+... -+|+...|..++..-. .+-+...+..+|+.|. ..| .|...|......=...|
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g 544 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLG 544 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCC
Confidence 8888899999999999999885 3456677777765332 2233788999999998 455 77888887777766778
Q ss_pred cccccchhhhh
Q 038914 558 ISLNSIPQFKR 568 (570)
Q Consensus 558 ~~~~a~~~~~~ 568 (570)
..+.+-.+|-|
T Consensus 545 ~~en~~~~~~r 555 (568)
T KOG2396|consen 545 RPENCGQIYWR 555 (568)
T ss_pred CcccccHHHHH
Confidence 77776666543
No 405
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=61.73 E-value=60 Score=24.53 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCC----------CHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRP----------PVTSFNILFGCLAKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (570)
+..|-+++|..-++++.....+-| +..++..|..++...|+|++++.-.+.++
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345678888888888775422111 22356678889999999999887766665
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.70 E-value=2e+02 Score=29.73 Aligned_cols=66 Identities=6% Similarity=-0.015 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 80 ILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
.++-.+.|.|.+++|.++....... .......+...+..+............-+....-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4666788999999999999555433 34455677788888877543333444455666667766654
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.12 E-value=23 Score=30.28 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG 105 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (570)
...|+.+.|.+++.+++..-| .....|..++...-+.|+++.|.+.|++.++..
T Consensus 6 ~~~~D~~aaaely~qal~lap--~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAP--EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCc--hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 457899999999999999888 888999999999999999999999999999874
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.10 E-value=58 Score=23.26 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCccc
Q 038914 507 NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP-DASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 560 (570)
|...-..+...+...|++++|++.+-++++..-.. +...-..++++|.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 44555555566666666666666666665432111 2333344444444444433
No 409
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.71 E-value=94 Score=27.80 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=63.7
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcC
Q 038914 72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST----GLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
..-..+|..++..|.+-++.+.+.++..+..+. |..-|.. -.-.+.|-.|..+.-+++.++..+.+.+.|
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~------l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF------LCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH------HHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 445678899999999999998888877665543 4444432 223334444555566778888888888876
Q ss_pred CCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914 148 CEPDV----FTYNTLINGLCRTGHTIVALNLFEEMANG 181 (570)
Q Consensus 148 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (570)
-.-+. .+|..+ .+....++.+|-.+|-.....
T Consensus 186 gDWeRrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 186 GDWERRNRYKVYKGI--FKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred CCHHhhhhHHHHHHH--HHHHHHhhHHHHHHHHHHhcc
Confidence 43221 123222 233456788888887776653
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.60 E-value=36 Score=20.73 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=18.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVD 551 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 551 (570)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666555555555443
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.82 E-value=1.9e+02 Score=28.88 Aligned_cols=162 Identities=11% Similarity=0.018 Sum_probs=87.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcc-----cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCC--------
Q 038914 165 TGHTIVALNLFEEMANGNGEIGVV-----CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMK-------DENI-------- 224 (570)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~-------- 224 (570)
...+++|...|.-+.......++. .+-.+.+...+..++..+|+.+-|-+++++.+ ...+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455778888888877655322221 23345566777788888998887777766643 2111
Q ss_pred -----CCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHCC--
Q 038914 225 -----NPNAVTYTSL---ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELC-KNGKMDGASRLLELMILRG-- 293 (570)
Q Consensus 225 -----~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-- 293 (570)
+-|...|.+| +..+.+.|-|..|.++.+.+.+....-|+.....++..|+ +..++.-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 1123333333 3445566777777777777776544445555556666554 4455666666666554332
Q ss_pred -CCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 038914 294 -VKPDTSTYNTLIDGYCLTGK---IDRARELFVSMES 326 (570)
Q Consensus 294 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 326 (570)
.-|+-..-.+++..|..... -..|...+.++..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23333322334444444433 2344444444443
No 412
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.49 E-value=66 Score=23.43 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 038914 384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSS 463 (570)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (570)
.++|..+-+-+...+.. ...+-..-+..+...|++++|..+.+.. ..||...|.+| +-.+.|-.+++..-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 45555555544433211 2222222334456677787777776554 25677766665 34566666666666666
Q ss_pred hhhCC
Q 038914 464 LPRVG 468 (570)
Q Consensus 464 ~~~~~ 468 (570)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.27 E-value=29 Score=31.14 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 511 FNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLS 547 (570)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 547 (570)
|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3566666666666666666666666666544444443
No 414
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=58.55 E-value=86 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLE 505 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (570)
+..++--+...|+++.|+.+.+.++++|+.
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444566788888888888888887754
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.24 E-value=54 Score=27.60 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 504 LEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
..|+..+|..++.++...|+.++|..+.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777777777777777777777764
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.26 E-value=1.8e+02 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=24.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMK 220 (570)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 220 (570)
+-.+.++..+..++...|+.+.|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567788888888888888888888877764
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.14 E-value=88 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=12.5
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 038914 446 DGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~ 466 (570)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345666666666666666554
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.94 E-value=1.3e+02 Score=26.08 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=17.2
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 038914 355 LYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEM 394 (570)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (570)
+.+-....+++-+...+..++ +...|++.+|+..++.-
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHH
Confidence 333333334443333333332 34456666666655443
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.42 E-value=1.5e+02 Score=26.56 Aligned_cols=134 Identities=15% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH----hcCCCCCcch
Q 038914 79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLR----VFGCEPDVFT 154 (570)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~ 154 (570)
.-++.-..+.+++++|+..|.+.+..|+..+..+.+.-=.+....++.|...|++..-........ ...-+....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 345566678889999999999999998888777665444444444455555566655554443322 2211122333
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 155 YNTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPD-----TVTYTTIIDGLCKKGFVDKAKELFLK 218 (570)
Q Consensus 155 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 218 (570)
...|+..+-.. ..++.-+.++....+.. .+.. ...-.-++..+.+.|++.+|+.+...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA------~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWA------DREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444322 33444444444443321 0000 11123455666667777766665443
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.19 E-value=1.4e+02 Score=26.01 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCChhhHHHHHHHHHhcCChhHH
Q 038914 215 LFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-G-----------VQPNVVTFTVIMDELCKNGKMDGA 282 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~g~~~~a 282 (570)
+.+-....+++.+......++ +...|+...|+..++.-... | ..|.+.....++..|. .+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHH
Confidence 333333344444444444443 34567776666666554331 1 1233334444443332 3455555
Q ss_pred HHHHHHHHHCCCCCC
Q 038914 283 SRLLELMILRGVKPD 297 (570)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (570)
.+++.++-+.|+.|.
T Consensus 258 ~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 258 LKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHHHHcCCCHH
Confidence 555555555555443
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.16 E-value=1.9e+02 Score=27.67 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 038914 376 LGLFEVHQVEHALKLFDEMRRNHVAANTY--IYTTFIDGLC--KNGYIVKAVELFRTLRIL 432 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 432 (570)
..+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888877765 444443 3334444443 345677777777776543
No 422
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=1.5e+02 Score=27.29 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHhcCCHHHHHHHHHhhhhC---CCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRV---GLMADVVTY--NIMIHGLCNDGQMDKAHGLFLDMEA-----KGLEPNFV 509 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 509 (570)
...+.++.++|+++++++.+. .-.|+...| ...++++...|+..++.+.+.+..+ .+++|+..
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344555777777777776542 123444433 3445556667777777777666655 35555443
No 423
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.73 E-value=39 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHH--HHH
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFK--RLN 102 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~--~~~ 102 (570)
+.+..++..+...|++++|+++|+ -+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~ 30 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLC 30 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356778888999999999999955 544
No 424
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.54 E-value=3e+02 Score=29.23 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=88.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD--TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
..|...|++++|++..+. +|+ ..++..-.+.|.+.+++..|-+++.++.+. |..+.--
T Consensus 366 k~yLd~g~y~kAL~~ar~------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLK 425 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALK 425 (911)
T ss_pred HHHHhcchHHHHHHhccC------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHH
Confidence 457788999998887554 233 234555667788889999999999887442 4444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-----HHHHH-hcCChh----HHHHHHHHHHH--------C-CCCCCH
Q 038914 238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI-----MDELC-KNGKMD----GASRLLELMIL--------R-GVKPDT 298 (570)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~-~~g~~~----~a~~~~~~~~~--------~-~~~~~~ 298 (570)
+....+.+.-..++.+=.+ .++|...+-..+ +..|. +.++.+ ++..-++.-.+ . ....+.
T Consensus 426 Fl~~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~ 504 (911)
T KOG2034|consen 426 FLEINQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDE 504 (911)
T ss_pred HHhcCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 5555555533333332222 233333322221 22221 222222 22222211110 0 001122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 299 STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKM 359 (570)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (570)
....+..+.+...|+.+....+-.-+.+ |..++..+.+.+.+++|++++..-
T Consensus 505 ~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 505 LNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred hhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233333444555666655544333332 567777788888899888887654
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.15 E-value=1.1e+02 Score=23.94 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 472 DVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 472 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+..+--.+.+++.++. +..+.+.+++...+.. .|+ ......|.-++.+.+++++++++++.+++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444555555443 2334444555555421 221 22333444455566666666666666553
No 426
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.20 E-value=85 Score=27.00 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=70.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC---ChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 038914 435 ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA---DVVTYN--IMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV 509 (570)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (570)
.+...-++.|+--|.-...+.+|-..|..-.. +.| +..+++ .-++.....|+.++|++......-.-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 45556667777677666666667666665443 333 334443 35566788999999999888765433344543
Q ss_pred HHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 510 IFNTLM----LGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDL 552 (570)
Q Consensus 510 ~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 552 (570)
.+-.+. --..+.|..++|+++.+.=....-.-+...+..+-..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~ 147 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERT 147 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 333332 2356788899999988876632222333455544444
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.15 E-value=1.7e+02 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.036 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY--AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
.+..+...++|..|.++++.+... ++++.. .+..+..+| ..+..-++.+|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y-----~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGY-----DAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHH-----HHHHccCHHHHHHHHHHHHHH
Confidence 444567889999999999999986 444443 223333333 234456888999999887754
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.10 E-value=53 Score=20.02 Aligned_cols=33 Identities=9% Similarity=0.303 Sum_probs=20.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLI 235 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 235 (570)
..+.|-..++..++++|.+.|+..+...+..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 345566666666677776666666665555544
No 429
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=1.2e+02 Score=27.95 Aligned_cols=102 Identities=14% Similarity=-0.012 Sum_probs=71.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--HhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL-FPD--LYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE 149 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (570)
.....|--=+.-|.+..+|..|...|.+.++... .|| ...|..--++... -|++..|+.--...+...+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-------l~NyRs~l~Dcs~al~~~P- 150 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-------LGNYRSALNDCSAALKLKP- 150 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHhcCc-
Confidence 3445566778889999999999999999987742 222 2334333333333 4588888888888877632
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
-...+|-.-..++....++.+|..+.++....+
T Consensus 151 ~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 151 THLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 245566666777888899999999999876643
No 430
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=51.87 E-value=3.1e+02 Score=28.89 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHH
Q 038914 57 DALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEA 136 (570)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A 136 (570)
.=+.-++.-+..++ .+...+..|+..+.+.|++++....-.+|...-+-+.......+..... ....+...++
T Consensus 97 ~ei~t~~ee~ai~~--y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~-----mt~s~~~~~v 169 (881)
T KOG0128|consen 97 QEIRTLEEELAINS--YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELS-----MTQSEERKEV 169 (881)
T ss_pred hHHHHHHHHhcccc--cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-----hccCcchhHH
Confidence 33344444444455 6777888899999999999988887777776633333322222222221 1223678888
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHH-------hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH---HHHHHHHhc
Q 038914 137 AALFTKLRVFGCEPDVFTYNTLINGLC-------RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT---TIIDGLCKK 206 (570)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~ 206 (570)
...|++.+.. ..++..|.-.+..+. +.++++....+|.+++..-+.. +..-...|. -+-..|...
T Consensus 170 ~~~~ekal~d--y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~---~t~G~~~we~~~E~e~~~l~n 244 (881)
T KOG0128|consen 170 EELFEKALGD--YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH---ITEGAAIWEMYREFEVTYLCN 244 (881)
T ss_pred HHHHHHHhcc--cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhh---hcccHHHHHHHHHHHHHHHHh
Confidence 8888887754 234444544444332 3467888888998887643210 111122232 223344444
Q ss_pred CCHHHHHHHHHHHHhC
Q 038914 207 GFVDKAKELFLKMKDE 222 (570)
Q Consensus 207 g~~~~a~~~~~~~~~~ 222 (570)
-..++...+|..-...
T Consensus 245 ~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 245 VEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456666666665554
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.58 E-value=1.9e+02 Score=26.38 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=19.3
Q ss_pred HHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+|+.+...++.|.-..|..+.-.+...=.+.+.+.+|..+..
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 344444444444444444444444444444445555544443
No 432
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.20 E-value=1.3e+02 Score=30.52 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHH
Q 038914 157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD------KAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~ 230 (570)
+|..+|...|++-.+.++++.+...+.. -+.-...++..+....+.|.++ .|.+++++..- .-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchH
Confidence 7899999999999999999999875421 1222567888888888988754 55556655553 336667
Q ss_pred HHHHHHHHH
Q 038914 231 YTSLICGFC 239 (570)
Q Consensus 231 ~~~l~~~~~ 239 (570)
|..|+.+..
T Consensus 106 ~all~~~sl 114 (1117)
T COG5108 106 YALLCQASL 114 (1117)
T ss_pred HHHHHHhhc
Confidence 766665433
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.02 E-value=35 Score=30.58 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=46.3
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
..+.|+.+.|..+|+.+++..| .++.....++...-..++.-+|-++|-+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP--~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAP--TNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCC--CCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4578999999999999999998 77888888888777778888999999888876
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.78 E-value=87 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP 108 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 108 (570)
.+..++..++.++.. |++..+..++.++..+|+.++|.++.+++... .|
T Consensus 127 l~~~~~~a~~~l~~~---P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l--yP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRR---PDPNVYQRYALALALLGDPEEARQWLARARRL--YP 175 (193)
T ss_pred HHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 334444444555444 57888999999999999999999999999987 55
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.75 E-value=1.1e+02 Score=27.73 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----------hcCCHHHH
Q 038914 248 KHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC----------LTGKIDRA 317 (570)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 317 (570)
.++|+.+...++.|.-.++.-+.-.+.+.=.+...+.+++.+... ..-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666667777777776666666666666777777777777653 222444444433 24777777
Q ss_pred HHHHHH
Q 038914 318 RELFVS 323 (570)
Q Consensus 318 ~~~~~~ 323 (570)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 436
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.52 E-value=71 Score=27.79 Aligned_cols=62 Identities=8% Similarity=-0.057 Sum_probs=53.3
Q ss_pred HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
++....-..+..|++-++++....+++..| .|+.+|..-+.+.+..=+.++|..=|..++..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHP--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344444455678899999999999999998 89999999999999988999999999999977
No 437
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.98 E-value=2.3e+02 Score=26.51 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNST--GLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRV 145 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (570)
....+...+.+.+++..+...++.-... +-.|.. .-..++..|...|-.+.-..+++.|+.+|+..+.
T Consensus 142 ~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~-~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 142 IHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL-DPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred hHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC-CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3445666777778777766555432211 001100 1122333444444555557789999999988875
No 438
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.67 E-value=45 Score=18.27 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHH
Q 038914 489 MDKAHGLFLDMEAKGLEPNFVIFN 512 (570)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~ 512 (570)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444444444444 234444443
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.28 E-value=2.5e+02 Score=26.75 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 194 VTYTTIIDGLCKKGFVDKAKELFLKMKDEN--INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
..+.-+..-|...|+++.|++.|.+..+.- .+-.+..|..+|..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356778888999999999999998865431 1113455667777777888888887777776653
No 440
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.89 E-value=48 Score=29.39 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=50.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA 112 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 112 (570)
+...++++.|+...++.+..+| .++..+.--+.+|.+.|.+..|++-++..... -|+...
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P--~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNP--EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCC--CChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCchH
Confidence 3467789999999999999998 77777888889999999999999999997776 455443
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.83 E-value=1.2e+02 Score=24.10 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
++..+...++.-.|.++|+.+.+.+...+..|-...+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555444333333333334444433
No 442
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.66 E-value=3.6e+02 Score=28.11 Aligned_cols=182 Identities=10% Similarity=0.073 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHH
Q 038914 57 DALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN-STGLFPDLYAYNILINCFLQNGSSLCVESRIME 135 (570)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 135 (570)
+.+...+.+.+.+..+....+-..+...|.-.|+|++|+++.-.+- ...+.+++.....++.-|... -...
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~--------yi~~ 112 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM--------YIET 112 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH--------HHHH
Confidence 4444444444333312222333445568889999999998876664 334556666666666655442 2233
Q ss_pred HHHHHHHHH-hcCCCCCc-chHHHHHHHHHhcCChhHHH---------HHHHHH-HhCCCCCCcccCCChhhHHHHHHHH
Q 038914 136 AAALFTKLR-VFGCEPDV-FTYNTLINGLCRTGHTIVAL---------NLFEEM-ANGNGEIGVVCKPDTVTYTTIIDGL 203 (570)
Q Consensus 136 A~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (570)
+.+.+..-. ..++++.. .....++..|...+++..|+ .+++++ .+.+ .+......++..+
T Consensus 113 ~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d--------~~~~~~~yll~l~ 184 (929)
T KOG2062|consen 113 ASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSD--------SVIGNLTYLLELL 184 (929)
T ss_pred HHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccc--------ccchHHHHHHHHH
Confidence 333333211 11111111 23444555555555544443 344442 2221 1122333344433
Q ss_pred HhcCC-HHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 204 CKKGF-VDKAKELFLKMKD---ENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 204 ~~~g~-~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
....+ .+--.++++.+.+ ....|| |..+..+|....+.+.+.++++++.+.
T Consensus 185 ~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 185 ISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33322 2222333333332 233444 556778888889999999999999884
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.35 E-value=1.2e+02 Score=26.84 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQ----G-VQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
...+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334556666677777777776666421 1 1233344555666666677776666655444
No 444
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.09 E-value=1.5e+02 Score=23.56 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038914 250 LFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312 (570)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (570)
+.+.+.+.|.+++.. -..++..+...++.-.|..+++++.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445556554432 34456666666666777777777777655555554444444444444
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.73 E-value=29 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
....|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456667778888888888877775 6666543
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.54 E-value=47 Score=29.91 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038914 476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF 511 (570)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (570)
|+..|....+.||+++|+.+++++.+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666677777777777777777776655444444
No 447
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=4.2e+02 Score=28.32 Aligned_cols=78 Identities=9% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN 160 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 160 (570)
+-..|...|+|+.|+++...- |+. ...++...+ ..+...++|..|-++|.++.+ .+..+.-
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~--le~Vl~~qA---df~f~~k~y~~AA~~yA~t~~--------~FEEVaL 424 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDA--LETVLLKQA---DFLFQDKEYLRAAEIYAETLS--------SFEEVAL 424 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHH--HHHHHHHHH---HHHHhhhHHHHHHHHHHHhhh--------hHHHHHH
Confidence 334677888888888775422 333 233333222 335556788888888887632 3334444
Q ss_pred HHHhcCChhHHHHHHHH
Q 038914 161 GLCRTGHTIVALNLFEE 177 (570)
Q Consensus 161 ~~~~~g~~~~A~~~~~~ 177 (570)
-+....+.+.-..++.+
T Consensus 425 KFl~~~~~~~L~~~L~K 441 (911)
T KOG2034|consen 425 KFLEINQERALRTFLDK 441 (911)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 45555555533333333
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.78 E-value=2.8e+02 Score=26.38 Aligned_cols=61 Identities=8% Similarity=-0.145 Sum_probs=40.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHH
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTK 142 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (570)
.+..+...++|..|.++|+++....+.++.......+..+++. -..+..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~-y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRA-YLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHH-HHHHHccCHHHHHHHHhh
Confidence 3446778999999999999999886555554433333322221 233445588888888875
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.76 E-value=2.9e+02 Score=26.40 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC
Q 038914 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQG--VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG---------VKPD 297 (570)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~ 297 (570)
..+.-+...|...|+++.|++.|......- .+.....|..+|..-.-.|+|.....+..+..+.- +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778889999999999999999865431 12234566677777788899988888777776541 2223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSM 324 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (570)
...+..+.... .+++..|.+.|-..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 33444444333 33666666655443
No 450
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.38 E-value=2.7e+02 Score=26.06 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH----HHHhcCChhHHHHHHHHHHHC
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH----GLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~ 502 (570)
+.+.++..-+......+.++++..=..+|.++-- -.+..+..++|.+..-+|.+.
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3445566666666666555444333344544322 223456667777777777664
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.26 E-value=4.3e+02 Score=28.29 Aligned_cols=129 Identities=10% Similarity=0.067 Sum_probs=81.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
+..|+++.|++...++ .+...|..|+....++|+.+-|...|++...- +. +.-.|.-
T Consensus 654 Le~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf----ek------------LsfLYli 710 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF----EK------------LSFLYLI 710 (1202)
T ss_pred hhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh----hh------------eeEEEEE
Confidence 5688888888777766 67788999999999999999999998877642 11 1123455
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.|+.++..++......+ .|... ......-.|+.++-..+++..-.. .-.|.. ....|.-
T Consensus 711 Tgn~eKL~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g~~-----------~laylt----a~~~G~~ 769 (1202)
T KOG0292|consen 711 TGNLEKLSKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGGQL-----------PLAYLT----AAAHGLE 769 (1202)
T ss_pred eCCHHHHHHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcCcc-----------cHHHHH----HhhcCcH
Confidence 67888877766655433 12222 111122357887777777664321 122221 2346777
Q ss_pred HHHHHHHHHHHhC
Q 038914 210 DKAKELFLKMKDE 222 (570)
Q Consensus 210 ~~a~~~~~~~~~~ 222 (570)
++|.++.++....
T Consensus 770 ~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 770 DQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhhccc
Confidence 8888888877664
No 452
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.95 E-value=2.3e+02 Score=31.51 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=88.1
Q ss_pred hCCHHHHHH------HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccCCChhhHHHHHHH
Q 038914 130 ESRIMEAAA------LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG-EIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 130 ~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 202 (570)
+|.+.++.+ ++......-.+.....|..|...+-+.|+.++|+..-.+..-... -.|...+.+...|..+...
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 345555555 555322211123445678888888899999999887666543221 1222233445667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----C--CCChhhHHH
Q 038914 203 LCKKGFVDKAKELFLKMKDE-------NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-----V--QPNVVTFTV 268 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~ 268 (570)
....++...|...+.+.... ..+|...+++.+-..+...++++.|++.++.+.+.. . -.+..++..
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~ 1104 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHA 1104 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHH
Confidence 77777877777777666542 233444455555555555677888888877776531 1 123344455
Q ss_pred HHHHHHhcCChhHHHH
Q 038914 269 IMDELCKNGKMDGASR 284 (570)
Q Consensus 269 l~~~~~~~g~~~~a~~ 284 (570)
+.+.+...+++..|..
T Consensus 1105 ~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1105 LARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 5555444454444433
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.83 E-value=3e+02 Score=26.55 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhh--C----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPR--V----GLMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
..|++..+-.||+..|+++++.+.- . .+++ ...++-.++-+|.-.+++.+|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777775431 1 1111 2234555666777777777777776544
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.78 E-value=2.4e+02 Score=25.74 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
++....+.++..+..+.+..+.. ...-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444432 22333445556667777777777666554
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.25 E-value=1.1e+02 Score=33.88 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHHH-HHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCC-C-HhhHHHHHHHHHhcCCcch
Q 038914 57 DALCVFDY-MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST-----GLFP-D-LYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 57 ~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~ 128 (570)
+++.++.. +....| .....|..++..+.+.|+.++|+..-.++... |..+ + ...+..+--...
T Consensus 956 ~slnl~~~v~~~~h~--~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f------- 1026 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHP--EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF------- 1026 (1236)
T ss_pred hhhhHHHHhhhhcch--hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-------
Confidence 44447763 444555 67778899999999999999999987776433 2111 1 111222211111
Q ss_pred hhCCHHHHHHHHHHHHhc-----CC-CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccCCChhhHHHHH
Q 038914 129 VESRIMEAAALFTKLRVF-----GC-EP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI-GVVCKPDTVTYTTII 200 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 200 (570)
..+....|+..+.+.... |. .| ...+++.+-..+...++++.|++.++.+.+..... |..--.+..++..+.
T Consensus 1027 ~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a 1106 (1236)
T KOG1839|consen 1027 AVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALA 1106 (1236)
T ss_pred hccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHH
Confidence 123556666666665532 21 23 33344555555555688999999998887643211 100122344455555
Q ss_pred HHHHhcCCHHHHH
Q 038914 201 DGLCKKGFVDKAK 213 (570)
Q Consensus 201 ~~~~~~g~~~~a~ 213 (570)
......+++..|.
T Consensus 1107 ~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1107 RLFESMKDFRNAL 1119 (1236)
T ss_pred HHHhhhHHHHHHH
Confidence 5554444444443
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.17 E-value=1.5e+02 Score=22.80 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 491 KAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHR 533 (570)
Q Consensus 491 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 533 (570)
.+.++|..|..+|+--. ...|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776655443 44556666667777777777777764
No 457
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.59 E-value=1.4e+02 Score=22.95 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHH
Q 038914 92 DTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFT 141 (570)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~ 141 (570)
++..++|..|.+.++-...+.+-...+.+... .|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~------~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEA------AGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 55788999999998776666555555544443 489999999886
No 458
>PRK12798 chemotaxis protein; Reviewed
Probab=42.32 E-value=3.2e+02 Score=26.26 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=39.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHH
Q 038914 276 NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC-LTGKIDRARELFVSMESNGCMHDV----VSYSILINGYCKTKDVE 350 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 350 (570)
.|+.+++.+.+..+.....++...-+..|+.+-. ...+...|+++|+...-. -|.+ .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4666666666665555444444444555544332 334556666666654432 1211 12223333445555655
Q ss_pred HHHHHHHHHH
Q 038914 351 EGLNLYRKML 360 (570)
Q Consensus 351 ~A~~~~~~~~ 360 (570)
++..+-.+..
T Consensus 203 rf~~la~~Y~ 212 (421)
T PRK12798 203 KFEALARNYL 212 (421)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 459
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.05 E-value=3.2e+02 Score=26.18 Aligned_cols=51 Identities=20% Similarity=0.060 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038914 262 NVVTFTVIMDELCK---NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312 (570)
Q Consensus 262 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (570)
+-..+..++.++.+ -.+++.|+-++.+|++.|-.|....-..++-++-..|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 44445556666654 3577888888888888775555444444444444444
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.74 E-value=1.1e+02 Score=27.14 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 193 TVTYTTIIDGLCKKGFVDKAKELFLKMKD----EN-INPNAVTYTSLICGFCYANDWNEAKHLFIEMM 255 (570)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 255 (570)
......+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45555677777788888888888777652 23 23445566677777778888877776655543
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.45 E-value=1.6e+02 Score=22.64 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 038914 490 DKAHGLFLDMEAKGLEPNF-VIFNTLMLGFIRNNETSKVIELLH 532 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 532 (570)
++..++|..|..+|+--.. ..|......+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456667777776654433 344555666667777777777665
No 462
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.70 E-value=5.1e+02 Score=28.09 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCC
Q 038914 247 AKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR-GVKPDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 247 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 313 (570)
-.+.|.++.+.--.-|..++..-...+...|++..+.+++.++.+. +-.++...+..++..+...|-
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3344444443322224444554555556667777777777766653 334444555555554444443
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.62 E-value=3.1e+02 Score=25.59 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 490 DKAHGLFLDMEAKGLEPNF----VIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV 554 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 554 (570)
+++..++..++.. -|+. ..|..++......|.+++++.+|++++..|-.|-.+.-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3444445544442 2332 2344444555555666666666666666565555555555555544
No 464
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=3e+02 Score=25.39 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCC----C
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID-GLCKKGFVDKAKELFLKMKDENINP----N 227 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~----~ 227 (570)
.++.....-||+.||-+.|++.+.+.....-..| .+-|+..+..-+. .|....-+.+-++..+.+.+.|-.- -
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 4667778889999999999999888776542222 4566555544333 3333333344444444444444221 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 228 AVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
..+|..+- +....++.+|-.+|-+...
T Consensus 183 lKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 183 LKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 23343332 2344566677666665544
No 465
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.34 E-value=73 Score=18.29 Aligned_cols=28 Identities=4% Similarity=0.224 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNS 103 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (570)
.+|..|+......++|+.|++=|.+++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3577788888888999998888887765
No 466
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.29 E-value=74 Score=23.72 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHccCccc
Q 038914 511 FNTLMLGFIRNNETSKVIELLHRMDM-----RNVMPDASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~ 560 (570)
|..++..|...|..++|++++.++.+ ..-.+.......+++.+.+.|..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~~~ 96 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGNED 96 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCChhh
No 467
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.19 E-value=2.7e+02 Score=24.81 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
..++..+-..+.+......|+++-+.++..+ +.+-.+|.---..+...+ ++.+-++.++++.+.+ +.|-..|..-=.
T Consensus 43 r~~m~YfRAI~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ 120 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRV 120 (318)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHH
Q ss_pred HHHhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 482 GLCNDGQMD-KAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS 544 (570)
Q Consensus 482 ~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 544 (570)
.....|++. .-+++.+.|+...-+ +..+|..--+++..-+.++.-+.+..+|++.++..+..
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
No 468
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.02 E-value=5.7e+02 Score=28.49 Aligned_cols=128 Identities=10% Similarity=0.040 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS 233 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (570)
-|...++.+-+.+..+.+.++-..+.+.-+.. .+.-..+++.+..-....|.+-+|...+-+-... .....+...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRq 1059 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHH
Confidence 35567778888888888888888877653110 1111345666666677777777776655433221 112345556
Q ss_pred HHHHHHhcCCHHH------------HHH-HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 234 LICGFCYANDWNE------------AKH-LFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLL 286 (570)
Q Consensus 234 l~~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 286 (570)
++-.++.+|.++. ... +++..-+.........|..|-..+...+++.+|--++
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 6666777776543 333 3333323222223345666666667788888766544
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.96 E-value=1.6e+02 Score=21.96 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=7.6
Q ss_pred HhcCCHHHHHHHHHhhhh
Q 038914 449 CKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~ 466 (570)
.+.|-.+++...+.++..
T Consensus 80 ~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 80 WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHCT-HHHHHHHHHHHCT
T ss_pred HhhccHHHHHHHHHHHHh
Confidence 344444444444444433
No 470
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.88 E-value=5.5e+02 Score=28.27 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=59.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHH
Q 038914 401 ANTYIYTTFIDGLCKNGYIVK-AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIM 479 (570)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 479 (570)
++..+-...+.++...+..+. +...+..+.. .++..+-...+.++...|....+...+..+.+ .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 344444445555555443322 2233333322 34555555666666666655444333444443 2344444445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 480 IHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.++...+. +++...+..+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555544 344455555553 34555555555555554223345555555553
No 471
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.87 E-value=3e+02 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
.++....+.++..+..+.++.+.. ...-...+..+...|++..|++++.+..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------------VQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345555566666666666666643 344455677788899999999999887653
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.86 E-value=38 Score=26.18 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=27.6
Q ss_pred CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038914 125 SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING 161 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (570)
..+...|.-..|-.+|++|++.|-+|| .|+.|+..
T Consensus 103 ~tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 103 QTLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred cchhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 556667888899999999999997776 56676654
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.72 E-value=1.7e+02 Score=22.49 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHH
Q 038914 89 KHYDTVLSLFKRLNSTG----LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLC 163 (570)
Q Consensus 89 g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 163 (570)
+.-.....+++++++.- ..-+...|..+.-.+++ ..+.+..+|..|...|+..... .|......+.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~---------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le 110 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD---------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLE 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT---------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH---------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 34444555665554431 11123334444444444 3348999999999887665543 4777888888
Q ss_pred hcCChhHHHHHHHHH
Q 038914 164 RTGHTIVALNLFEEM 178 (570)
Q Consensus 164 ~~g~~~~A~~~~~~~ 178 (570)
..|++++|.++|+..
T Consensus 111 ~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 111 KRGNFKKADEIYQLG 125 (126)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhh
Confidence 999999999999864
No 474
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.47 E-value=3e+02 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 038914 228 AVTYTSLICGFCYANDWNEA 247 (570)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~a 247 (570)
...|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34466777777777776643
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.98 E-value=2.7e+02 Score=24.45 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHH---CCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHh
Q 038914 490 DKAHGLFLDMEA---KGLEPNFVIFNTLM-----LGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 490 ~~A~~~~~~~~~---~~~~p~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.|.+.|+++.+ ..++|..+++..++ ..|-..|+.++|.++.++..+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666665543 12667666654443 234458999999988888763
No 476
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.44 E-value=1.5e+02 Score=21.04 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 135 EAAALFTKLRVFGCEPDVFTYNTLINGLC---RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
.+.++++.+.+.|+ .+....=.+-. ..|+.+.|.+++..+. ++ ...|..++.++...|.-+-
T Consensus 20 ~~~~v~d~ll~~~i----lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 20 KTRDVCDKCLEQGL----LTEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred hHHHHHHHHHhcCC----CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhh
Confidence 35566777776642 33332222223 5688999999999988 54 4678888888888887665
Q ss_pred HHH
Q 038914 212 AKE 214 (570)
Q Consensus 212 a~~ 214 (570)
|.+
T Consensus 85 A~e 87 (88)
T cd08819 85 ARE 87 (88)
T ss_pred hhc
Confidence 543
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.20 E-value=4e+02 Score=25.91 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCC
Q 038914 311 TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKD-----VEEGLNLYRKMLSKGIR 365 (570)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~ 365 (570)
..+.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++.....|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 36677777777777777655554444444444333332 23344445555555554
No 478
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.14 E-value=3e+02 Score=24.17 Aligned_cols=47 Identities=13% Similarity=-0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhh---CCCCCChhhHHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 038914 455 EIAWELFSSLPR---VGLMADVVTYNIMIH-----GLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 455 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 501 (570)
+.|.+.|+++.. ..++|...++..++- .|--.|+.++|+++.+++.+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555555433 225666555544433 23457999999988777654
No 479
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.08 E-value=2.2e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914 523 ETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 560 (570)
..-.|.++++++.+.+...+..|....++.|.+.|...
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44556666666665554555666666666666666553
No 480
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.05 E-value=1.6e+02 Score=20.92 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHH
Q 038914 312 GKIDRARELFVSME 325 (570)
Q Consensus 312 ~~~~~a~~~~~~~~ 325 (570)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 481
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=3.7e+02 Score=24.97 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHHHHHHHC---CCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 272 ELCKNGKMDGASRLLELMILR---GVKPDTSTY--NTLIDGYCLTGKIDRARELFVSMES 326 (570)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (570)
..-+.++.++|+++++++.+. .-.|+...| ....+++...|+..++.+++++..+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334445666666666666543 113333333 2334555566677777766666555
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.94 E-value=4.9e+02 Score=26.28 Aligned_cols=164 Identities=15% Similarity=0.046 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHHHHhcCC----------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCC-------
Q 038914 52 TITPNDALCVFDYMLNMRP----------SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN-------STGLF------- 107 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~------- 107 (570)
..-|++|...|..+....+ +|.++.+...++.++..+|+.+-|..+.++.+ .-.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4457889998888775422 14667788888999999999887777666643 22222
Q ss_pred -----CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHhC
Q 038914 108 -----PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC-RTGHTIVALNLFEEMANG 181 (570)
Q Consensus 108 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 181 (570)
|....+-..|.-+. ..+.+.|-+..|.++-.-+....+.-|+.....+|..|. +..+++--+++++.....
T Consensus 331 L~y~~~eNR~FyL~l~r~m---~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYM---QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred CcccchhhHHHHHHHHHHH---HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 22222222222222 224456788888887777777654446666777777764 567787777777776543
Q ss_pred CCCCCcccCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 038914 182 NGEIGVVCKPDTVTYTTIIDGLCKKGF---VDKAKELFLKMKD 221 (570)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~ 221 (570)
+.- ..-|+-.-=.+|+..|..... ...|...+.++..
T Consensus 408 n~l---~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 408 NKL---SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred ccH---hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 310 023332222344444544443 3445555555444
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.92 E-value=2.4e+02 Score=23.19 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccc
Q 038914 490 DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLN 561 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 561 (570)
+....+-+.+...|++.+..=. .++..+...++.-.|.++++++.+.+...+..|....++.|.+.|...+
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.30 E-value=3.4e+02 Score=27.82 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHhhHHHH
Q 038914 233 SLICGFCYANDWNEAKHLFIEMMDQ--GVQPNVVTFTVIMDELCKNGKMD------GASRLLELMILRGVKPDTSTYNTL 304 (570)
Q Consensus 233 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 304 (570)
+|+.+|...|++..+.++++.+... |-+.-...+|..++...+.|.++ .+.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999998764 22223456788888888888765 3444444443 44577888887
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 038914 305 IDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~ 325 (570)
+.+...--.-....-++..++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333333444433
No 485
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=4.7e+02 Score=25.79 Aligned_cols=133 Identities=11% Similarity=-0.037 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-cchhhCCHHHHHHHHHHHHhcC-CCCC--
Q 038914 78 FNILFGCLAKTK--HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS-SLCVESRIMEAAALFTKLRVFG-CEPD-- 151 (570)
Q Consensus 78 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-~~~~-- 151 (570)
...++..+...| +...+++.++..... .|.... =.....+.|. .+....+++.|..-+++.-... .-|+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~--~is~~v---eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQF--QISFLV---EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcc--CChHHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence 345566666677 777888888887765 332211 0011111121 1233568888888888764321 1122
Q ss_pred ---cchHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 152 ---VFTYNTLINGLCRTG-HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLK 218 (570)
Q Consensus 152 ---~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 218 (570)
..++..|...+.... .+..|..++++..+..... .--.......|+....-..++..|.+++.-
T Consensus 85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~---p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV---PYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 235667777777766 7888889999888754210 001122234566777778888888888543
No 486
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.90 E-value=1.4e+02 Score=25.81 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=34.6
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
..+.++.+.|.+++.++... .+.....|-.+...--+.|+++.|.+.|++..+
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 44566777777777777663 122345666666666677777777777777766
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.50 E-value=6.6e+02 Score=27.29 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 195 TYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 195 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 356677777777777777777777665
No 488
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.16 E-value=3.7e+02 Score=24.28 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=105.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-------TVTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINP 226 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~ 226 (570)
+..-..+.+++++|+..+.+++..| +..| ..+...+...|...|+....-+......+. .-+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 4555677899999999999998876 3333 335567788888888877665555433221 1111
Q ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCC
Q 038914 227 NAVTYTSLICGFCYA-NDWNEAKHLFIEMMDQGVQPNV-----VTFTVIMDELCKNGKMDGASRLLELM----ILRGVKP 296 (570)
Q Consensus 227 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~ 296 (570)
......+|+..+-.. ..++..+.+....++....-+. ..-..++..+.+.|.+.+|+.+...+ ++.+-++
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
Confidence 334445555544332 3456666665555443211111 12234677788889988888765544 3444444
Q ss_pred CHhhHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 038914 297 DTSTYNTL-IDGYCLTGKIDRARELFVSMES----NGCMHDVVSYSILING--YCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 297 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~ 361 (570)
+..+...+ -.+|...++..++..-+..+.. .-+||-...--.++++ .+...++.-|..+|-+..+
T Consensus 163 ~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 163 NLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred ceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 43332222 2345555555554444433322 1123333332233332 3445566677776666655
No 489
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.13 E-value=4.7e+02 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVT 370 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (570)
..+.+.|+.++..|.+.|..|....
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4678888888888888776655443
No 490
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.36 E-value=15 Score=36.84 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHH
Q 038914 61 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALF 140 (570)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~ 140 (570)
++..+....+ ..-.......+.++.+.|+++.|..+++++....+.+.......++.+ ......|+.++|+..+
T Consensus 11 yL~~A~~a~~-~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A-----~lal~~~~~~~Al~~L 84 (536)
T PF04348_consen 11 YLQQAQQASG-EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRA-----RLALAQGDPEQALSLL 84 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCc-HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHH-----HHHHhcCCHHHHHHHh
Confidence 3444444444 222233344557888999999999999988866555555444444444 3344568899999988
Q ss_pred HHHHhcCCCCCc--chHHHHHHHHHhcCChhHHHHHHH
Q 038914 141 TKLRVFGCEPDV--FTYNTLINGLCRTGHTIVALNLFE 176 (570)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 176 (570)
........++.. ..+.....++...|++-+|...+-
T Consensus 85 ~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i 122 (536)
T PF04348_consen 85 NAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERI 122 (536)
T ss_dssp --------------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 754333233222 234444556666777666655433
No 491
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.12 E-value=4e+02 Score=24.38 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHhhhhhcchhhHHHHHHHHhhh---cCCC-------------CCCCCChhHHHHHHHHHHh
Q 038914 22 ESLRLTVKDRASLETFLRERFKS---SGEG-------------DITTITPNDALCVFDYMLN 67 (570)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~g~~~~A~~~~~~~~~ 67 (570)
.++.+.+....++...+.++... .|.. ....||...|+..++.+..
T Consensus 32 ~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 32 FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44556666666677777666543 1211 1368899999999988664
No 492
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.04 E-value=1.5e+02 Score=19.37 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHH
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGF-----CYANDWNEAKHL 250 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 250 (570)
+...|++-+|-++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445666677777776665432223344444444332 244555555443
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.03 E-value=1.1e+02 Score=32.21 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=58.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038914 414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAH 493 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 493 (570)
..+|+++.|++.-.++ .+..+|..|+..-...|+.+-|+..|+.... |+.|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 4557777666554432 2566777888777788888888777776654 333344455667777666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 494 GLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
++.+.+.. +.|..+. ...-.-.|+.++-.++++..
T Consensus 719 Km~~iae~---r~D~~~~---~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 719 KMMKIAEI---RNDATGQ---FQNALYLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHHh---hhhhHHH---HHHHHHhccHHHHHHHHHhc
Confidence 65554443 2232221 11122346777777666654
No 494
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.75 E-value=7.4e+02 Score=27.39 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=16.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038914 157 TLINGLCRTGHTIVALNLFEEMA 179 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~ 179 (570)
..++-+...+++.+|..+.++-.
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhc
Confidence 34556677899999988877643
No 495
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.56 E-value=4.2e+02 Score=24.50 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCh----hh
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMES----NGCMHDVVSYSILIN-GYCKTKDVEEGLNLYRKMLSKGIRPTV----VT 370 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~ 370 (570)
.+......|++.|+.+.|.+.+....+ .|...|+..+..-+. .|....-+.+-++..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 445556677788887777777665433 344555544433322 233333344555555555555543222 22
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRR 396 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (570)
|..+ .+....++.+|-.+|-+...
T Consensus 186 Y~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 3222 23456677777777766553
No 496
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=31.08 E-value=2.1e+02 Score=25.65 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
|+..|..+....| .+...|+.++......|+.-.|+-.|-+.+-.. .|-......+...+.+
T Consensus 1 A~~~Y~~A~~l~P--~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~-~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLP--SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR-IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-T--TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS-B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC--CCCCcccchhhhhccccchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 6788999999999 889999999999999999988888887777543 4555455555544433
No 497
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.43 E-value=7.7e+02 Score=27.18 Aligned_cols=153 Identities=9% Similarity=-0.037 Sum_probs=87.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHH-HHHHHHHHHhCCCCcCHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH-ALKLFDEMRRNHVAANTYIYTTFI 410 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~ 410 (570)
|...-...+.++...+..+. +..+.. .++...-...+.++...+..+. +...+..+.+ .++..+-...+
T Consensus 727 d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~ 796 (897)
T PRK13800 727 DHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAAL 796 (897)
T ss_pred CHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHH
Confidence 44444555555555443322 112222 2355555556666666555432 3344444443 45677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChh
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMD 490 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 490 (570)
.++...|....+...+..+.. .++..+-...+.++...+. +++...+..+.+ .++...-...+.++...+...
T Consensus 797 ~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~ 869 (897)
T PRK13800 797 AALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDP 869 (897)
T ss_pred HHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCH
Confidence 888888877655444444443 4566666667777777775 456666666665 466666666777777653344
Q ss_pred HHHHHHHHHHH
Q 038914 491 KAHGLFLDMEA 501 (570)
Q Consensus 491 ~A~~~~~~~~~ 501 (570)
.+...+..+.+
T Consensus 870 ~a~~~L~~al~ 880 (897)
T PRK13800 870 AARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHh
Confidence 66667766665
No 498
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.42 E-value=5.1e+02 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCChhHHHHHHH
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVV--TFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 39 L~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 39 IKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445566543 33334444433321 11223444556677665554443
No 499
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=29.99 E-value=5.3e+02 Score=26.14 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=67.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
..++...+...++..+..+| .+..++..++.++-..|....+...+.+....- .|+...+..-...|...+....-.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~l 155 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNP--ENCPAVQNLAAALELDGLQFLALADISEIAEWL-SPDNAEFLGHLIRFYQLGRYLKLL 155 (620)
T ss_pred ccccchhHHHHHhhhHhcCc--ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CcchHHHHhhHHHHHHHHHHHHHh
Confidence 45566677788888888888 788889999998888888877777777643332 344433332222233355555556
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLING 161 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (570)
|+..++...+++..+..++ .......++.+
T Consensus 156 ~~~~~~~~~l~~~~d~~p~-~~~~~~~~~~~ 185 (620)
T COG3914 156 GRTAEAELALERAVDLLPK-YPRVLGALMTA 185 (620)
T ss_pred ccHHHHHHHHHHHHHhhhh-hhhhHhHHHHH
Confidence 7888888888777765322 34444444444
No 500
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.74 E-value=1.4e+02 Score=19.72 Aligned_cols=52 Identities=2% Similarity=0.001 Sum_probs=35.1
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914 189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA 241 (570)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (570)
+.|....++.++..+++..-.+.++..+.+....|. .+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 445667777788888877778888888888887764 3666666666655543
Done!