Query 038914
Match_columns 570
No_of_seqs 721 out of 3467
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 07:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-40 1.2E-44 334.9 44.7 476 52-553 66-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.4E-39 1.5E-43 326.7 41.4 452 87-568 65-575 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-29 6.3E-34 241.3 47.3 383 158-557 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-29 1.3E-33 239.2 47.2 378 128-523 10-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.4E-28 4.8E-33 238.0 23.6 202 318-519 10-221 (501)
6 2gw1_A Mitochondrial precursor 100.0 7.9E-26 2.7E-30 225.0 40.3 438 75-537 6-478 (514)
7 4g26_A Pentatricopeptide repea 100.0 6.6E-28 2.3E-32 233.3 23.7 206 135-346 8-223 (501)
8 2gw1_A Mitochondrial precursor 100.0 4.7E-26 1.6E-30 226.6 32.7 430 123-568 12-474 (514)
9 3fp2_A TPR repeat-containing p 99.9 4E-25 1.4E-29 221.1 32.9 435 39-502 25-491 (537)
10 3fp2_A TPR repeat-containing p 99.9 1.3E-24 4.4E-29 217.5 33.1 401 118-538 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-23 4.2E-28 205.3 38.7 385 137-562 12-444 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 201.4 40.7 326 190-550 23-370 (450)
13 2xm6_A Protein corresponding t 99.9 2.3E-19 7.8E-24 176.4 47.8 363 137-538 27-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-20 9.5E-25 175.6 39.4 330 192-554 2-351 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 4.2E-20 1.4E-24 174.4 39.7 299 190-519 34-351 (359)
16 2xm6_A Protein corresponding t 99.9 3.9E-18 1.3E-22 167.6 50.7 368 130-535 56-465 (490)
17 2ooe_A Cleavage stimulation fa 99.9 1.3E-18 4.4E-23 172.9 45.8 433 61-537 1-492 (530)
18 3hym_B Cell division cycle pro 99.9 9.3E-20 3.2E-24 169.8 33.4 302 149-490 19-322 (330)
19 3hym_B Cell division cycle pro 99.9 1.3E-19 4.5E-24 168.8 34.3 291 262-559 21-321 (330)
20 2ooe_A Cleavage stimulation fa 99.9 2.1E-18 7.1E-23 171.4 41.2 408 52-502 25-492 (530)
21 1fch_A Peroxisomal targeting s 99.9 1.8E-19 6.2E-24 170.6 26.5 288 240-532 37-354 (368)
22 1fch_A Peroxisomal targeting s 99.9 1.6E-19 5.4E-24 171.1 26.0 312 240-568 13-355 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 2.2E-16 7.6E-21 162.2 48.5 413 72-557 982-1415(1630)
24 1xi4_A Clathrin heavy chain; a 99.8 8.1E-16 2.8E-20 158.1 49.9 406 51-532 997-1440(1630)
25 4eqf_A PEX5-related protein; a 99.8 2E-19 7E-24 170.0 21.7 266 262-533 64-352 (365)
26 4g1t_A Interferon-induced prot 99.8 1.8E-17 6.3E-22 162.5 35.8 392 66-503 42-460 (472)
27 4g1t_A Interferon-induced prot 99.8 9.9E-17 3.4E-21 157.3 38.6 360 192-568 50-455 (472)
28 4eqf_A PEX5-related protein; a 99.8 3E-18 1E-22 162.0 25.3 275 193-498 65-352 (365)
29 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.7E-22 153.3 28.3 282 51-389 15-303 (449)
30 3cv0_A Peroxisome targeting si 99.8 8.2E-18 2.8E-22 156.4 27.5 262 266-535 24-313 (327)
31 1b89_A Protein (clathrin heavy 99.8 1E-18 3.6E-23 160.7 19.0 284 130-462 16-306 (449)
32 3cv0_A Peroxisome targeting si 99.8 1E-17 3.5E-22 155.7 25.1 266 297-568 20-311 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 2.1E-17 7.1E-22 149.5 25.9 219 269-501 40-263 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 8.5E-17 2.9E-21 145.5 26.3 258 200-474 6-269 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.1E-16 7.3E-21 152.6 28.8 314 79-431 7-350 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 9.4E-17 3.2E-21 155.1 25.7 343 157-538 8-388 (452)
37 2h6f_A Protein farnesyltransfe 99.8 9.4E-17 3.2E-21 150.0 22.0 251 73-345 95-365 (382)
38 2h6f_A Protein farnesyltransfe 99.7 3.2E-16 1.1E-20 146.4 23.8 216 131-359 111-344 (382)
39 2pl2_A Hypothetical conserved 99.7 6.5E-16 2.2E-20 133.5 22.3 194 368-567 5-209 (217)
40 2pl2_A Hypothetical conserved 99.7 8.6E-16 2.9E-20 132.7 21.7 200 149-360 2-212 (217)
41 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.8E-20 134.1 25.3 222 266-501 8-235 (258)
42 3uq3_A Heat shock protein STI1 99.7 1.8E-15 6.2E-20 135.1 23.2 226 298-537 5-236 (258)
43 3u4t_A TPR repeat-containing p 99.7 7.3E-15 2.5E-19 132.4 25.1 250 300-554 5-266 (272)
44 4e6h_A MRNA 3'-END-processing 99.7 1.8E-12 6.2E-17 129.2 42.4 429 54-501 47-569 (679)
45 3u4t_A TPR repeat-containing p 99.7 2E-14 6.7E-19 129.5 26.1 235 76-328 4-251 (272)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-15 7.4E-20 136.1 18.7 251 125-391 13-269 (275)
47 3spa_A Mtrpol, DNA-directed RN 99.7 8.4E-17 2.9E-21 160.2 9.9 154 400-558 124-287 (1134)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-15 7.7E-20 136.0 18.7 254 45-321 11-269 (275)
49 2q7f_A YRRB protein; TPR, prot 99.7 4.8E-15 1.7E-19 131.0 19.8 199 40-257 24-222 (243)
50 1ouv_A Conserved hypothetical 99.7 2.1E-13 7.2E-18 122.7 30.3 222 194-433 7-252 (273)
51 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-16 5.6E-21 158.2 10.5 116 368-483 127-246 (1134)
52 1ouv_A Conserved hypothetical 99.7 3.3E-13 1.1E-17 121.5 31.1 219 301-537 9-251 (273)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 8.8E-19 126.3 20.8 199 334-537 24-222 (243)
54 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.4E-18 122.6 25.4 194 46-257 44-238 (252)
55 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.2E-18 122.1 25.4 200 334-537 38-238 (252)
56 4e6h_A MRNA 3'-END-processing 99.6 1.4E-11 4.8E-16 122.9 41.8 444 91-553 48-584 (679)
57 3sf4_A G-protein-signaling mod 99.6 1.6E-14 5.6E-19 138.4 20.4 303 226-560 7-364 (406)
58 2vq2_A PILW, putative fimbrial 99.6 3E-13 1E-17 117.8 25.0 205 73-292 6-211 (225)
59 3sf4_A G-protein-signaling mod 99.6 3.1E-15 1.1E-19 143.5 13.2 277 46-326 16-335 (406)
60 2vq2_A PILW, putative fimbrial 99.6 3.7E-13 1.3E-17 117.2 25.3 202 151-361 7-210 (225)
61 4a1s_A PINS, partner of inscut 99.6 2.1E-14 7E-19 138.0 17.9 280 229-537 49-372 (411)
62 3ro2_A PINS homolog, G-protein 99.6 1.4E-14 4.9E-19 134.9 14.6 275 46-326 12-331 (338)
63 2ond_A Cleavage stimulation fa 99.6 1E-12 3.5E-17 120.3 26.3 217 56-292 33-270 (308)
64 4a1s_A PINS, partner of inscut 99.6 5.1E-14 1.7E-18 135.3 17.8 280 192-502 47-372 (411)
65 3ro2_A PINS homolog, G-protein 99.6 9.7E-14 3.3E-18 129.2 17.4 275 231-537 8-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 1E-12 3.5E-17 110.3 21.7 165 333-501 5-169 (184)
67 3ulq_A Response regulator aspa 99.5 1.4E-12 4.8E-17 123.7 24.7 299 203-535 22-366 (383)
68 4abn_A Tetratricopeptide repea 99.5 2.9E-13 9.8E-18 131.6 20.2 215 313-534 83-318 (474)
69 3ulq_A Response regulator aspa 99.5 1.3E-12 4.5E-17 123.9 24.0 225 129-361 24-292 (383)
70 2ond_A Cleavage stimulation fa 99.5 1.7E-11 5.9E-16 112.1 29.4 218 315-536 33-269 (308)
71 4abn_A Tetratricopeptide repea 99.5 3.5E-13 1.2E-17 131.0 18.5 214 54-288 83-317 (474)
72 1hz4_A MALT regulatory protein 99.5 1.5E-12 5E-17 123.2 22.2 274 48-326 23-321 (373)
73 3vtx_A MAMA; tetratricopeptide 99.5 3.3E-12 1.1E-16 107.2 21.8 167 297-467 4-170 (184)
74 3nf1_A KLC 1, kinesin light ch 99.5 6E-13 2.1E-17 122.3 14.3 245 263-536 27-306 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 4.7E-13 1.6E-17 123.0 13.4 171 44-221 32-223 (311)
76 3q15_A PSP28, response regulat 99.4 2.2E-11 7.6E-16 115.1 24.4 311 190-535 7-363 (378)
77 3q15_A PSP28, response regulat 99.4 2.5E-11 8.7E-16 114.7 24.8 227 339-568 107-361 (378)
78 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.6E-15 109.6 27.9 271 231-501 17-321 (373)
79 4i17_A Hypothetical protein; T 99.4 7.3E-11 2.5E-15 102.8 21.9 206 331-550 5-221 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2E-11 6.9E-16 123.3 20.0 165 367-536 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 6.3E-11 2.2E-15 99.3 20.1 163 370-536 10-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 3.4E-11 1.1E-15 121.7 20.6 166 332-501 8-173 (723)
83 4i17_A Hypothetical protein; T 99.4 1.1E-10 3.6E-15 101.7 21.4 206 296-514 5-220 (228)
84 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 97.7 19.8 162 336-501 11-172 (186)
85 3edt_B KLC 2, kinesin light ch 99.3 1.9E-11 6.4E-16 110.5 14.9 235 50-292 12-281 (283)
86 1qqe_A Vesicular transport pro 99.3 2.5E-10 8.6E-15 103.4 20.1 129 405-535 119-267 (292)
87 1qqe_A Vesicular transport pro 99.3 7.3E-11 2.5E-15 106.9 15.7 216 54-290 32-267 (292)
88 3edt_B KLC 2, kinesin light ch 99.3 6.7E-11 2.3E-15 106.8 15.0 233 275-536 13-280 (283)
89 3dra_A Protein farnesyltransfe 99.3 7.1E-09 2.4E-13 92.7 27.4 221 54-291 48-286 (306)
90 2uy1_A Cleavage stimulation fa 99.3 1E-08 3.6E-13 99.4 29.9 206 315-535 196-411 (493)
91 2uy1_A Cleavage stimulation fa 99.2 3.2E-08 1.1E-12 96.0 33.2 379 52-501 7-412 (493)
92 3mv2_B Coatomer subunit epsilo 99.2 6.5E-09 2.2E-13 91.8 24.6 184 317-509 85-287 (310)
93 3qky_A Outer membrane assembly 99.2 1.1E-09 3.6E-14 97.6 19.7 210 332-565 14-254 (261)
94 2pzi_A Probable serine/threoni 99.2 2.1E-10 7.1E-15 116.7 15.9 173 50-243 402-583 (681)
95 3urz_A Uncharacterized protein 99.2 1.1E-09 3.9E-14 93.4 18.0 139 407-551 58-198 (208)
96 3mv2_B Coatomer subunit epsilo 99.2 1.1E-08 3.6E-13 90.5 23.9 247 271-543 21-286 (310)
97 3urz_A Uncharacterized protein 99.2 1.7E-09 5.9E-14 92.2 18.0 137 373-515 59-197 (208)
98 4ga2_A E3 SUMO-protein ligase 99.2 2.1E-10 7.3E-15 92.0 11.3 145 45-208 3-149 (150)
99 3qky_A Outer membrane assembly 99.2 1.5E-09 5.1E-14 96.6 18.0 100 151-257 14-126 (261)
100 4ga2_A E3 SUMO-protein ligase 99.2 3.3E-10 1.1E-14 90.9 12.1 146 123-278 3-149 (150)
101 2r5s_A Uncharacterized protein 99.1 2.4E-10 8.3E-15 94.7 11.2 156 50-221 17-172 (176)
102 2fo7_A Synthetic consensus TPR 99.1 4.1E-09 1.4E-13 82.8 17.4 130 405-537 3-132 (136)
103 3dra_A Protein farnesyltransfe 99.1 9.1E-08 3.1E-12 85.6 26.9 220 90-326 48-286 (306)
104 3rjv_A Putative SEL1 repeat pr 99.1 4.9E-09 1.7E-13 89.6 18.2 176 135-328 4-198 (212)
105 3qou_A Protein YBBN; thioredox 99.1 3E-09 1E-13 95.9 17.5 165 400-568 114-280 (287)
106 2pzi_A Probable serine/threoni 99.1 1.6E-09 5.3E-14 110.3 17.2 173 344-523 402-583 (681)
107 3qou_A Protein YBBN; thioredox 99.1 3.1E-09 1.1E-13 95.7 17.2 158 48-221 126-283 (287)
108 2r5s_A Uncharacterized protein 99.1 2.1E-09 7.2E-14 89.0 14.6 158 406-568 9-169 (176)
109 3rjv_A Putative SEL1 repeat pr 99.1 1.2E-08 4.1E-13 87.2 19.3 176 170-363 4-198 (212)
110 2fo7_A Synthetic consensus TPR 99.1 7.5E-09 2.6E-13 81.2 16.9 128 371-501 4-131 (136)
111 2ifu_A Gamma-SNAP; membrane fu 99.1 6.3E-10 2.2E-14 101.5 11.8 135 154-290 78-222 (307)
112 2vsy_A XCC0866; transferase, g 99.1 3.1E-09 1.1E-13 106.3 17.5 153 52-223 2-158 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.4E-08 8E-13 86.4 20.8 198 45-293 10-214 (225)
114 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.9E-08 1E-12 85.8 21.2 186 332-538 3-214 (225)
115 4f3v_A ESX-1 secretion system 99.0 3E-09 1E-13 92.7 13.7 191 51-257 18-237 (282)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-09 5E-14 99.1 11.7 206 131-355 30-254 (307)
117 3q7a_A Farnesyltransferase alp 99.0 4.2E-07 1.4E-11 82.1 26.2 173 54-244 69-258 (349)
118 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.6E-13 101.7 17.8 153 346-502 2-157 (568)
119 3u3w_A Transcriptional activat 98.9 7.5E-08 2.6E-12 87.1 18.1 176 79-256 79-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.4E-07 4.7E-12 80.8 18.3 125 371-501 9-149 (213)
121 4gcn_A Protein STI-1; structur 98.9 3.7E-09 1.3E-13 81.8 6.8 112 40-156 9-120 (127)
122 2qfc_A PLCR protein; TPR, HTH, 98.9 3.1E-08 1.1E-12 89.7 14.0 177 73-256 73-265 (293)
123 3gw4_A Uncharacterized protein 98.9 8.7E-09 3E-13 87.6 9.7 167 50-221 3-175 (203)
124 2e2e_A Formate-dependent nitri 98.9 3.4E-08 1.2E-12 81.8 13.0 127 45-182 16-145 (177)
125 4gco_A Protein STI-1; structur 98.9 9.6E-08 3.3E-12 73.6 14.4 95 440-536 15-109 (126)
126 3u3w_A Transcriptional activat 98.9 9.1E-07 3.1E-11 79.9 23.2 162 374-535 81-264 (293)
127 3gyz_A Chaperone protein IPGC; 98.8 3.1E-08 1.1E-12 78.7 11.8 109 62-182 25-134 (151)
128 4gco_A Protein STI-1; structur 98.8 9.2E-08 3.1E-12 73.7 13.9 108 404-515 14-122 (126)
129 3gyz_A Chaperone protein IPGC; 98.8 6.9E-08 2.4E-12 76.7 13.5 96 404-501 37-132 (151)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.8E-07 6.2E-12 80.1 17.3 125 336-466 9-149 (213)
131 3q7a_A Farnesyltransferase alp 98.8 3.8E-06 1.3E-10 75.9 25.6 175 163-348 65-257 (349)
132 1p5q_A FKBP52, FK506-binding p 98.8 7.6E-09 2.6E-13 95.4 8.3 157 52-220 126-292 (336)
133 1a17_A Serine/threonine protei 98.8 2.2E-07 7.4E-12 75.8 16.4 129 404-535 14-144 (166)
134 2qfc_A PLCR protein; TPR, HTH, 98.8 4.3E-07 1.5E-11 82.1 19.2 164 372-535 79-264 (293)
135 2vgx_A Chaperone SYCD; alterna 98.8 6.4E-08 2.2E-12 77.1 10.9 111 60-182 8-119 (148)
136 2c2l_A CHIP, carboxy terminus 98.7 5.8E-08 2E-12 87.0 11.6 98 152-257 4-101 (281)
137 4f3v_A ESX-1 secretion system 98.7 2.3E-07 8E-12 80.8 14.5 195 130-328 19-238 (282)
138 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.6E-12 80.2 12.9 155 380-535 4-174 (203)
139 1na0_A Designed protein CTPR3; 98.7 5.2E-07 1.8E-11 69.3 15.1 113 439-554 10-122 (125)
140 1a17_A Serine/threonine protei 98.7 5.5E-07 1.9E-11 73.4 15.8 128 370-500 15-144 (166)
141 2vgx_A Chaperone SYCD; alterna 98.7 9.6E-08 3.3E-12 76.1 10.7 96 438-535 21-116 (148)
142 2vyi_A SGTA protein; chaperone 98.7 4.9E-07 1.7E-11 70.1 14.8 118 439-559 13-130 (131)
143 2e2e_A Formate-dependent nitri 98.7 1.4E-07 4.7E-12 78.0 12.2 124 126-258 19-145 (177)
144 1na0_A Designed protein CTPR3; 98.7 8.4E-07 2.9E-11 68.1 15.7 115 403-520 9-123 (125)
145 2vyi_A SGTA protein; chaperone 98.7 3.5E-07 1.2E-11 71.0 13.5 120 402-524 11-130 (131)
146 2lni_A Stress-induced-phosphop 98.7 2.9E-07 9.8E-12 71.8 13.1 117 438-557 16-132 (133)
147 4gcn_A Protein STI-1; structur 98.7 3.3E-07 1.1E-11 70.7 13.1 58 408-466 13-70 (127)
148 2lni_A Stress-induced-phosphop 98.7 3.9E-07 1.3E-11 71.0 13.4 117 402-522 15-132 (133)
149 2c2l_A CHIP, carboxy terminus 98.7 1.6E-07 5.3E-12 84.2 12.1 97 263-361 4-100 (281)
150 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.8E-10 71.9 24.6 189 52-257 42-267 (331)
151 3dss_A Geranylgeranyl transfer 98.7 1.7E-05 5.7E-10 71.4 24.9 182 349-537 90-304 (331)
152 1p5q_A FKBP52, FK506-binding p 98.7 6.1E-07 2.1E-11 82.6 15.7 130 403-535 147-292 (336)
153 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.6E-12 74.2 10.3 111 60-182 5-116 (142)
154 3upv_A Heat shock protein STI1 98.6 8.3E-07 2.8E-11 68.4 14.0 93 407-501 8-100 (126)
155 1wao_1 Serine/threonine protei 98.6 6.3E-07 2.1E-11 86.8 15.2 125 40-176 7-134 (477)
156 2fbn_A 70 kDa peptidylprolyl i 98.6 8.2E-08 2.8E-12 81.1 7.8 52 51-104 16-67 (198)
157 1elw_A TPR1-domain of HOP; HOP 98.6 2.7E-06 9.3E-11 64.4 15.1 97 439-537 5-101 (118)
158 4b4t_Q 26S proteasome regulato 98.6 1.2E-06 4E-11 84.4 15.9 201 51-255 16-243 (434)
159 3upv_A Heat shock protein STI1 98.5 1.4E-06 4.9E-11 67.1 12.8 98 438-537 4-101 (126)
160 2xcb_A PCRH, regulatory protei 98.5 5.9E-07 2E-11 71.0 10.7 95 405-501 20-114 (142)
161 1elw_A TPR1-domain of HOP; HOP 98.5 4.6E-06 1.6E-10 63.1 15.1 97 404-502 5-101 (118)
162 2dba_A Smooth muscle cell asso 98.5 4.4E-06 1.5E-10 66.4 15.5 98 437-537 27-128 (148)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 2.3E-06 7.7E-11 72.1 13.9 127 406-535 41-184 (198)
164 3q49_B STIP1 homology and U bo 98.5 4.3E-06 1.5E-10 65.4 14.6 97 437-535 8-104 (137)
165 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.2E-11 67.6 12.3 99 401-501 7-105 (137)
166 3sz7_A HSC70 cochaperone (SGT) 98.5 2.5E-06 8.4E-11 69.4 13.0 99 402-502 10-108 (164)
167 2kck_A TPR repeat; tetratricop 98.5 2.3E-06 8E-11 64.0 12.1 99 437-537 5-106 (112)
168 1elr_A TPR2A-domain of HOP; HO 98.5 1.5E-06 5.1E-11 67.3 11.3 95 441-536 7-107 (131)
169 2kck_A TPR repeat; tetratricop 98.5 2.4E-06 8.2E-11 64.0 12.1 98 152-257 6-106 (112)
170 1elr_A TPR2A-domain of HOP; HO 98.5 1.7E-06 5.8E-11 67.0 11.5 113 403-518 4-122 (131)
171 3sz7_A HSC70 cochaperone (SGT) 98.5 4.2E-06 1.4E-10 67.9 14.2 95 370-466 13-107 (164)
172 3ro3_A PINS homolog, G-protein 98.5 3.6E-07 1.2E-11 74.1 7.8 144 75-221 9-157 (164)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.9E-07 6.6E-12 90.0 6.8 158 52-221 247-414 (457)
174 1hxi_A PEX5, peroxisome target 98.4 1.9E-06 6.4E-11 65.7 10.7 92 441-535 20-112 (121)
175 1hxi_A PEX5, peroxisome target 98.4 2.3E-06 8E-11 65.2 10.8 96 154-257 19-114 (121)
176 4b4t_Q 26S proteasome regulato 98.4 6.7E-06 2.3E-10 79.1 15.6 193 128-325 15-243 (434)
177 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4E-10 63.8 14.6 98 402-502 27-128 (148)
178 3ro3_A PINS homolog, G-protein 98.3 3.5E-06 1.2E-10 68.1 10.8 133 404-536 10-157 (164)
179 2xev_A YBGF; tetratricopeptide 98.3 1.4E-05 4.6E-10 61.7 13.4 91 443-536 7-104 (129)
180 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.6E-11 83.8 9.4 124 120-252 9-134 (477)
181 2xev_A YBGF; tetratricopeptide 98.3 3.3E-05 1.1E-09 59.5 15.2 93 408-502 7-105 (129)
182 3rkv_A Putative peptidylprolyl 98.3 7.1E-06 2.4E-10 66.4 11.1 63 474-537 64-126 (162)
183 3rkv_A Putative peptidylprolyl 98.3 9.9E-06 3.4E-10 65.5 12.0 101 405-508 13-130 (162)
184 3k9i_A BH0479 protein; putativ 98.3 2.5E-06 8.6E-11 64.6 7.9 86 451-537 3-90 (117)
185 2hr2_A Hypothetical protein; a 98.3 3E-05 1E-09 60.8 13.8 74 475-548 59-147 (159)
186 1dce_A Protein (RAB geranylger 98.2 6.6E-05 2.2E-09 74.0 18.9 173 384-561 45-244 (567)
187 2l6j_A TPR repeat-containing p 98.2 1.2E-05 4E-10 60.1 10.5 94 472-568 3-103 (111)
188 1ihg_A Cyclophilin 40; ppiase 98.2 1.6E-05 5.4E-10 74.0 13.5 87 438-527 273-360 (370)
189 3k9i_A BH0479 protein; putativ 98.2 2.5E-06 8.6E-11 64.6 6.5 86 130-222 3-90 (117)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.9E-05 6.4E-10 76.1 14.2 95 438-535 317-413 (457)
191 1ihg_A Cyclophilin 40; ppiase 98.2 1.1E-05 3.8E-10 75.1 11.7 92 472-565 272-363 (370)
192 2hr2_A Hypothetical protein; a 98.1 3.8E-05 1.3E-09 60.2 11.9 96 406-501 14-130 (159)
193 3n71_A Histone lysine methyltr 98.1 3.7E-06 1.3E-10 80.7 7.4 140 83-222 317-464 (490)
194 1klx_A Cysteine rich protein B 98.1 0.00011 3.7E-09 57.3 14.2 111 417-538 9-127 (138)
195 1klx_A Cysteine rich protein B 98.1 0.00012 4.1E-09 57.0 14.0 112 130-258 8-127 (138)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4E-10 74.1 9.1 128 403-535 179-326 (338)
197 2if4_A ATFKBP42; FKBP-like, al 98.0 1.2E-05 4.2E-10 73.9 8.7 146 76-256 180-327 (338)
198 3n71_A Histone lysine methyltr 98.0 1.6E-05 5.3E-10 76.4 9.4 130 162-291 319-463 (490)
199 1dce_A Protein (RAB geranylger 98.0 0.00057 2E-08 67.3 20.8 173 349-526 45-244 (567)
200 1zu2_A Mitochondrial import re 98.0 7.2E-06 2.5E-10 64.1 5.4 102 53-160 16-132 (158)
201 1zu2_A Mitochondrial import re 97.9 2.1E-05 7.1E-10 61.5 6.7 95 415-514 14-130 (158)
202 2kat_A Uncharacterized protein 97.9 6.4E-05 2.2E-09 56.5 8.9 80 56-146 2-82 (115)
203 2l6j_A TPR repeat-containing p 97.8 9.8E-05 3.4E-09 54.9 8.8 61 440-501 6-66 (111)
204 1na3_A Designed protein CTPR2; 97.8 0.00031 1.1E-08 49.8 10.7 80 474-555 10-89 (91)
205 1na3_A Designed protein CTPR2; 97.7 0.00032 1.1E-08 49.7 10.3 78 440-519 11-88 (91)
206 2kat_A Uncharacterized protein 97.7 0.00031 1.1E-08 52.6 10.2 79 170-256 3-81 (115)
207 3ma5_A Tetratricopeptide repea 97.6 0.00023 7.8E-09 51.7 8.1 63 437-500 6-68 (100)
208 3u64_A Protein TP_0956; tetrat 97.5 0.0081 2.8E-07 51.9 16.6 90 168-265 179-279 (301)
209 3ma5_A Tetratricopeptide repea 97.5 0.0005 1.7E-08 49.9 8.1 65 151-222 6-70 (100)
210 3ly7_A Transcriptional activat 97.4 0.004 1.4E-07 56.3 14.4 74 470-547 274-347 (372)
211 3qww_A SET and MYND domain-con 97.3 0.00012 4.2E-09 69.0 3.8 54 51-104 310-369 (433)
212 2kc7_A BFR218_protein; tetratr 97.3 0.00036 1.2E-08 50.5 5.6 78 50-145 11-89 (99)
213 3lvg_A Clathrin heavy chain 1; 97.3 3.3E-07 1.1E-11 83.8 -13.5 260 52-353 38-324 (624)
214 3ly7_A Transcriptional activat 97.2 0.013 4.3E-07 53.1 15.7 43 65-111 186-233 (372)
215 3qww_A SET and MYND domain-con 97.2 0.00073 2.5E-08 63.8 7.9 92 165-256 311-410 (433)
216 3bee_A Putative YFRE protein; 97.2 0.0055 1.9E-07 43.3 10.4 50 54-105 24-73 (93)
217 3qwp_A SET and MYND domain-con 97.2 0.0016 5.4E-08 61.6 9.7 98 159-256 294-399 (429)
218 3qwp_A SET and MYND domain-con 97.1 0.0015 5.3E-08 61.7 8.9 100 81-180 293-399 (429)
219 3lvg_A Clathrin heavy chain 1; 97.0 7.2E-08 2.5E-12 88.0 -20.1 259 89-388 39-324 (624)
220 2kc7_A BFR218_protein; tetratr 96.9 0.006 2E-07 43.8 9.0 55 377-432 9-64 (99)
221 1pc2_A Mitochondria fission pr 96.9 0.013 4.3E-07 45.3 10.4 80 455-536 15-99 (152)
222 3mkq_A Coatomer beta'-subunit; 96.8 0.032 1.1E-06 58.2 16.9 49 515-568 756-810 (814)
223 3bee_A Putative YFRE protein; 96.7 0.015 5.2E-07 41.0 9.4 64 437-501 5-71 (93)
224 3u64_A Protein TP_0956; tetrat 96.5 0.016 5.4E-07 50.1 9.9 98 53-156 177-281 (301)
225 1pc2_A Mitochondria fission pr 96.5 0.022 7.4E-07 44.0 9.6 84 420-507 15-103 (152)
226 4h7y_A Dual specificity protei 96.4 0.086 2.9E-06 40.1 12.0 115 436-553 11-138 (161)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.048 1.6E-06 56.9 15.1 156 341-535 607-763 (814)
228 3mkq_B Coatomer subunit alpha; 96.4 0.15 5.3E-06 40.4 14.0 102 160-288 13-114 (177)
229 4h7y_A Dual specificity protei 96.2 0.064 2.2E-06 40.8 10.2 108 72-182 10-124 (161)
230 2v5f_A Prolyl 4-hydroxylase su 96.1 0.062 2.1E-06 38.8 10.0 61 441-501 8-74 (104)
231 2v5f_A Prolyl 4-hydroxylase su 96.1 0.034 1.2E-06 40.3 8.4 72 151-222 4-75 (104)
232 3mkq_B Coatomer subunit alpha; 95.9 0.51 1.7E-05 37.5 16.4 102 201-323 13-114 (177)
233 1nzn_A CGI-135 protein, fissio 95.3 0.15 5E-06 37.8 9.1 81 454-536 17-102 (126)
234 1nzn_A CGI-135 protein, fissio 95.3 0.14 4.9E-06 37.9 8.8 86 418-507 16-106 (126)
235 1wy6_A Hypothetical protein ST 94.5 1.1 3.7E-05 33.4 14.3 138 380-539 19-156 (172)
236 4ady_A RPN2, 26S proteasome re 94.4 5.4 0.00018 41.2 37.5 273 272-555 383-673 (963)
237 4gns_B Protein CSD3, chitin bi 94.2 0.28 9.7E-06 49.3 10.9 51 483-534 347-397 (754)
238 1wy6_A Hypothetical protein ST 94.2 1.3 4.3E-05 33.1 15.8 63 405-468 93-155 (172)
239 4b4t_P 26S proteasome regulato 93.7 4.8 0.00016 38.1 18.9 189 277-466 30-246 (445)
240 3ffl_A Anaphase-promoting comp 93.4 0.31 1.1E-05 38.0 7.5 108 74-181 19-151 (167)
241 4ady_A RPN2, 26S proteasome re 93.2 8.8 0.0003 39.7 35.7 320 236-565 382-728 (963)
242 2ff4_A Probable regulatory pro 93.1 0.73 2.5E-05 42.8 11.0 70 440-510 173-247 (388)
243 4b4t_P 26S proteasome regulato 92.8 6.6 0.00022 37.1 19.5 198 52-256 29-246 (445)
244 3o48_A Mitochondria fission 1 92.8 1.6 5.5E-05 32.5 10.1 71 470-542 37-110 (134)
245 4gns_B Protein CSD3, chitin bi 92.7 0.79 2.7E-05 46.2 11.2 127 79-220 252-398 (754)
246 1zbp_A Hypothetical protein VP 92.5 4 0.00014 34.9 13.5 117 49-182 7-130 (273)
247 4fhn_B Nucleoporin NUP120; pro 92.2 3.7 0.00013 44.4 16.6 85 155-245 902-988 (1139)
248 2ff4_A Probable regulatory pro 91.5 0.71 2.4E-05 42.8 8.8 55 199-254 177-231 (388)
249 4fhn_B Nucleoporin NUP120; pro 91.4 9.1 0.00031 41.4 18.5 130 265-396 901-1049(1139)
250 2wpv_A GET4, UPF0363 protein Y 91.4 7.1 0.00024 34.5 18.1 26 297-322 133-158 (312)
251 1y8m_A FIS1; mitochondria, unk 90.6 4.4 0.00015 30.6 11.8 71 470-542 36-109 (144)
252 3ffl_A Anaphase-promoting comp 90.3 5.2 0.00018 31.2 11.0 22 444-465 128-149 (167)
253 2wpv_A GET4, UPF0363 protein Y 90.1 9.5 0.00033 33.7 14.2 173 77-290 35-215 (312)
254 1y8m_A FIS1; mitochondria, unk 89.8 1.6 5.6E-05 32.9 7.6 61 52-115 55-115 (144)
255 3o48_A Mitochondria fission 1 89.7 1 3.4E-05 33.6 6.3 61 53-116 57-117 (134)
256 1v54_E Cytochrome C oxidase po 88.1 3.7 0.00013 28.7 7.7 46 456-501 28-73 (109)
257 3txn_A 26S proteasome regulato 87.4 18 0.0006 33.3 22.0 172 76-255 20-208 (394)
258 1v54_E Cytochrome C oxidase po 86.0 7 0.00024 27.4 9.8 61 384-445 26-86 (109)
259 1qsa_A Protein (soluble lytic 83.4 37 0.0013 33.5 34.4 44 516-562 389-432 (618)
260 2y69_E Cytochrome C oxidase su 82.5 13 0.00043 27.8 8.7 42 389-430 74-115 (152)
261 4b4t_R RPN7, 26S proteasome re 82.1 12 0.0004 35.2 11.2 63 194-256 132-196 (429)
262 1zbp_A Hypothetical protein VP 82.0 23 0.0008 30.2 11.9 54 378-432 7-60 (273)
263 4b4t_S RPN3, 26S proteasome re 81.9 7.2 0.00025 37.1 9.4 68 75-146 231-299 (523)
264 3txn_A 26S proteasome regulato 81.8 32 0.0011 31.6 21.8 26 264-289 20-45 (394)
265 2y69_E Cytochrome C oxidase su 81.5 14 0.00049 27.5 10.0 61 421-482 71-131 (152)
266 3lpz_A GET4 (YOR164C homolog); 81.2 29 0.001 30.9 22.1 80 332-430 135-214 (336)
267 3lpz_A GET4 (YOR164C homolog); 80.5 31 0.0011 30.7 21.6 48 400-451 133-180 (336)
268 4b4t_R RPN7, 26S proteasome re 78.7 18 0.00061 34.0 11.2 97 265-361 133-236 (429)
269 2p58_C Putative type III secre 77.6 14 0.00046 25.8 7.0 79 417-503 21-99 (116)
270 1qsa_A Protein (soluble lytic 76.9 61 0.0021 32.0 36.2 50 379-429 296-345 (618)
271 3esl_A Checkpoint serine/threo 76.5 28 0.00097 28.2 10.0 56 206-261 92-148 (202)
272 2uwj_G Type III export protein 73.9 13 0.00045 25.9 6.2 79 417-503 20-98 (115)
273 4a1g_A Mitotic checkpoint seri 69.7 15 0.00052 28.2 6.7 55 56-110 82-136 (152)
274 3ltm_A Alpha-REP4; protein eng 68.5 46 0.0016 27.0 17.7 110 436-557 93-202 (211)
275 3esl_A Checkpoint serine/threo 66.4 51 0.0017 26.7 12.6 56 451-506 92-148 (202)
276 2wvi_A Mitotic checkpoint seri 65.6 20 0.00068 28.0 6.7 55 56-110 77-131 (164)
277 2r9g_A AAA ATPase, central reg 59.2 69 0.0024 25.8 9.1 73 74-149 10-85 (204)
278 3ctd_A Putative ATPase, AAA fa 58.7 73 0.0025 25.9 9.6 75 73-149 30-107 (213)
279 4aez_C MAD3, mitotic spindle c 54.6 28 0.00095 28.8 6.0 53 56-108 131-183 (223)
280 3bge_A Predicted ATPase; struc 54.5 83 0.0028 25.3 8.9 70 76-147 5-77 (201)
281 3eiq_C Programmed cell death p 52.9 1.3E+02 0.0045 27.1 10.6 65 336-401 220-286 (358)
282 3mv2_A Coatomer subunit alpha; 49.7 1.4E+02 0.0047 26.4 11.2 71 488-558 185-258 (325)
283 2uwj_G Type III export protein 47.8 69 0.0024 22.4 9.5 87 381-476 19-105 (115)
284 2p58_C Putative type III secre 46.7 72 0.0025 22.3 10.5 87 381-476 20-106 (116)
285 4gq2_M Nucleoporin NUP120; bet 46.5 1.7E+02 0.0059 30.8 12.1 49 509-557 898-950 (950)
286 2ijq_A Hypothetical protein; s 44.4 1.1E+02 0.0037 23.7 8.2 52 205-256 44-103 (161)
287 1wdy_A 2-5A-dependent ribonucl 43.4 1.5E+02 0.0051 25.0 10.5 15 84-98 11-25 (285)
288 2d2s_A Exocyst complex compone 42.0 1.5E+02 0.0052 24.7 9.8 87 340-429 25-117 (235)
289 4a1g_A Mitotic checkpoint seri 40.2 1.2E+02 0.0042 23.2 12.0 55 490-544 82-137 (152)
290 2r9g_A AAA ATPase, central reg 40.1 1.5E+02 0.005 24.0 9.9 55 275-330 26-85 (204)
291 2d2s_A Exocyst complex compone 39.9 1.7E+02 0.0056 24.5 9.5 29 332-360 90-118 (235)
292 3bge_A Predicted ATPase; struc 38.4 1.6E+02 0.0053 23.8 8.6 33 275-307 19-51 (201)
293 2wvi_A Mitotic checkpoint seri 37.9 1.4E+02 0.0049 23.2 12.1 51 492-542 79-130 (164)
294 1ya0_A SMG-7 transcript varian 37.3 84 0.0029 30.0 7.3 79 40-121 153-231 (497)
295 2ijq_A Hypothetical protein; s 35.6 1.5E+02 0.0053 22.9 7.2 54 483-536 42-103 (161)
296 4aez_C MAD3, mitotic spindle c 35.5 1.9E+02 0.0064 23.9 10.3 53 490-542 131-184 (223)
297 1wty_A Hypothetical protein TT 35.2 1.3E+02 0.0043 21.8 7.3 76 453-535 3-79 (119)
298 4gq2_M Nucleoporin NUP120; bet 34.1 3.3E+02 0.011 28.7 11.8 108 199-312 816-950 (950)
299 3mkr_B Coatomer subunit alpha; 33.9 1.7E+02 0.0057 25.8 7.9 64 493-558 181-249 (320)
300 4ets_A Ferric uptake regulatio 33.7 80 0.0027 24.5 5.5 69 55-124 13-83 (162)
301 3ctd_A Putative ATPase, AAA fa 33.1 2E+02 0.0068 23.5 9.1 35 276-310 48-82 (213)
302 1wdy_A 2-5A-dependent ribonucl 32.8 2.2E+02 0.0076 23.9 9.6 18 269-286 8-25 (285)
303 3pvs_A Replication-associated 32.7 3.1E+02 0.011 25.6 13.9 29 226-256 192-220 (447)
304 2xig_A Ferric uptake regulatio 31.6 1.7E+02 0.0058 22.2 7.5 43 235-277 33-75 (150)
305 3eu9_A Huntingtin-interacting 31.2 2.1E+02 0.0073 23.2 9.5 18 158-175 45-62 (240)
306 2fe3_A Peroxide operon regulat 31.0 1.7E+02 0.0058 22.0 7.2 42 236-277 29-70 (145)
307 2fu4_A Ferric uptake regulatio 30.9 1.1E+02 0.0039 20.0 6.3 62 498-560 7-69 (83)
308 2nsz_A Programmed cell death p 30.9 1.6E+02 0.0055 21.7 7.6 107 441-560 10-119 (129)
309 2nsz_A Programmed cell death p 30.7 1.6E+02 0.0055 21.7 7.0 24 337-360 11-34 (129)
310 2keb_A DNA polymerase subunit 30.5 1.4E+02 0.0047 20.8 6.7 57 491-549 27-88 (101)
311 2crb_A Nuclear receptor bindin 30.1 75 0.0026 21.7 3.9 25 78-102 18-42 (97)
312 3eiq_C Programmed cell death p 30.0 3.1E+02 0.011 24.7 12.7 59 300-360 56-116 (358)
313 3pvs_A Replication-associated 30.0 3.5E+02 0.012 25.3 14.3 23 345-367 267-289 (447)
314 4b4t_S RPN3, 26S proteasome re 29.7 3.8E+02 0.013 25.7 11.5 65 153-222 232-299 (523)
315 1bpo_A Protein (clathrin); cla 29.6 3.6E+02 0.012 25.4 10.3 135 215-359 348-482 (494)
316 3ph0_C ASCG; type III secretio 29.4 98 0.0034 18.8 4.0 42 52-95 19-60 (61)
317 2ion_A PDCD4, programmed cell 27.7 1.3E+02 0.0045 23.0 5.7 24 337-360 13-36 (152)
318 1ug3_A EIF4GI, eukaryotic prot 27.5 2.9E+02 0.01 24.6 8.9 25 301-325 14-38 (339)
319 3kea_A K1L; tropism, ANK repea 26.9 3E+02 0.01 23.5 10.3 8 163-170 70-77 (285)
320 2qx5_A Nucleoporin NIC96; mRNA 26.9 4.8E+02 0.017 26.0 20.6 44 195-240 155-198 (661)
321 3kae_A CDC27, possible protein 26.8 2.3E+02 0.008 22.3 10.0 30 538-567 201-232 (242)
322 2ion_A PDCD4, programmed cell 26.7 1.6E+02 0.0054 22.6 6.0 64 155-225 12-77 (152)
323 2w57_A Ferric uptake regulatio 26.6 1.8E+02 0.006 22.1 6.4 63 498-561 7-70 (150)
324 4ets_A Ferric uptake regulatio 25.6 1.9E+02 0.0063 22.4 6.4 55 257-312 27-83 (162)
325 1mzb_A Ferric uptake regulatio 25.3 1.9E+02 0.0066 21.4 6.3 35 243-277 33-67 (136)
326 3hra_A Ankyrin repeat family p 25.0 1.9E+02 0.0066 22.7 6.9 187 159-357 9-199 (201)
327 3eyy_A Putative iron uptake re 24.8 1.6E+02 0.0056 22.2 5.8 34 244-277 33-66 (145)
328 3jxi_A Vanilloid receptor-rela 24.3 1.5E+02 0.0053 24.7 6.4 26 202-227 11-36 (260)
329 2zu6_B Programmed cell death p 23.9 3.7E+02 0.013 23.6 9.6 58 301-360 6-65 (307)
330 3jxi_A Vanilloid receptor-rela 23.7 1.6E+02 0.0056 24.5 6.5 56 235-290 9-73 (260)
331 2zu6_B Programmed cell death p 23.5 3.8E+02 0.013 23.5 9.8 58 196-255 6-65 (307)
332 2w57_A Ferric uptake regulatio 23.4 2E+02 0.0069 21.8 6.1 35 243-277 32-66 (150)
333 2fe3_A Peroxide operon regulat 22.7 2.5E+02 0.0084 21.1 7.3 58 254-312 13-70 (145)
334 3eyy_A Putative iron uptake re 22.3 2.4E+02 0.0082 21.2 6.3 48 76-124 19-66 (145)
335 3eu9_A Huntingtin-interacting 22.1 3.1E+02 0.011 22.1 8.4 15 162-176 16-30 (240)
336 3ltm_A Alpha-REP4; protein eng 21.4 3.1E+02 0.011 21.8 18.7 141 151-313 32-172 (211)
337 2xig_A Ferric uptake regulatio 21.4 2.7E+02 0.0092 21.1 8.0 59 254-313 18-76 (150)
338 2b7e_A PRE-mRNA processing pro 21.2 1.1E+02 0.0037 18.9 3.2 9 264-272 22-30 (59)
339 3ubw_A 14-3-3E, 14-3-3 protein 21.1 3.8E+02 0.013 22.7 12.5 47 490-536 173-227 (261)
340 3kae_A CDC27, possible protein 20.9 3.1E+02 0.011 21.6 9.8 82 50-144 44-141 (242)
341 2o03_A Probable zinc uptake re 20.3 1.5E+02 0.0051 21.8 4.7 50 512-561 14-63 (131)
342 3t5v_B Nuclear mRNA export pro 20.0 1E+02 0.0035 29.0 4.4 68 78-145 179-248 (455)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-40 Score=334.91 Aligned_cols=476 Identities=10% Similarity=-0.001 Sum_probs=376.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
.|.+..+...+... | .++...|+.++..+.+.|++++|+.+|+++... .|+..++..+..+|... |
T Consensus 66 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~-------g 131 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----S-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT-------G 131 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT-------T
T ss_pred cCccCCCCCccccc----h-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHc-------C
Confidence 34444454444433 2 357788999999999999999999999999965 67777887777777775 5
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCCcccCCChhhHHHHHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~ 202 (570)
++++|+.+|+++... +++..+++.++.+|.+.|++++|+.+|+++..... ....+.+.+..+|+.++.+
T Consensus 132 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (597)
T 2xpi_A 132 DYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209 (597)
T ss_dssp CHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence 999999999998654 66888999999999999999999999995332210 0000024468899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------HHHHHhcCCH
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSL--------------------------------------ICGFCYANDW 244 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~ 244 (570)
|.+.|++++|+++|+++.+.+.. +...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 99999999999999999886422 44444433 4455567888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 245 NEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSM 324 (570)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (570)
++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8999999888765 4688889999999999999999999999998765 336778888999999999999999999998
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHH
Q 038914 325 ESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY 404 (570)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 404 (570)
.... +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|+.+|+.+.+.+ +.+..
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 8654 4578888889999999999999999999988753 2357788889999999999999999999988764 45778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCC--hhhHHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMAD--VVTYNI 478 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~ 478 (570)
++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 88889999999999999999999988775 567888999999999999999999999988775 45666 678899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
++.+|...|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+.+ +.+...+..+..+|
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 9999999999999999999988753 4478888999999999999999999999998653 33456666666554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-39 Score=326.71 Aligned_cols=452 Identities=12% Similarity=0.037 Sum_probs=381.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038914 87 KTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG 166 (570)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (570)
..|.+..+...+..+. .++...+..++..+.+.| ++++|+.+|+++... .|+..++..++.+|.+.|
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g-------~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g 131 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQ-------QYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG 131 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHcc-------CchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC
Confidence 3455555555554433 356777888888887764 999999999999865 567788999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHH
Q 038914 167 HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---------------NINPNAVTY 231 (570)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~ 231 (570)
++++|+.+|+++.. .+++..+++.++.+|.+.|++++|+++|+++... +.+.+..+|
T Consensus 132 ~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 132 DYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp CHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred cHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence 99999999999865 4678999999999999999999999999954322 223458899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH--------------------------------------HHHH
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI--------------------------------------MDEL 273 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~ 273 (570)
+.++.+|.+.|++++|+.+|+++.+.+.. +...+..+ +..|
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886432 33333322 4455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914 274 CKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGL 353 (570)
Q Consensus 274 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 353 (570)
.+.|++++|.++|+++.+. +++..++..++.+|.+.|++++|..+|+++...+ +.+..++..++.++.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 6778999999999998865 5789999999999999999999999999999876 447888999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914 354 NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK 433 (570)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 433 (570)
.+++++.... +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998753 3467889999999999999999999999998754 4568899999999999999999999999998876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--
Q 038914 434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN-- 507 (570)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-- 507 (570)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 6688999999999999999999999999998863 457789999999999999999999999999875 66787
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 508 FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
..+|..++.+|.+.|++++|.++++++.+.+ +.+..++..++.+|.+.|++++|++.|++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7899999999999999999999999999765 45789999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-29 Score=241.26 Aligned_cols=383 Identities=12% Similarity=0.060 Sum_probs=312.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (570)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 4456678899999999998888764 4456777888888888999999999998888763 4577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914 238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRA 317 (570)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 317 (570)
+...|++++|+..|+++.+.. +.+..++..++.++...|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988753 2245678888889999999999999999988763 23455677788888888999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914 318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN 397 (570)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (570)
...|+++.... +.+..+|..+..++...|++++|+..|+++...+. .+...+..+...+...|++++|...++...+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999888764 44677888899999999999999999999888633 25667888888889999999999999888775
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHH
Q 038914 398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN 477 (570)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 477 (570)
. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 4467788888899999999999999999988875 5567788899999999999999999999988863 55678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914 478 IMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 557 (570)
.++.++...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+.. +.+...+..++.++.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999875 24457788889999999999999999999998642 234677777777776655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.7e-29 Score=239.19 Aligned_cols=378 Identities=13% Similarity=0.048 Sum_probs=328.7
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
...|++++|+..++++.+.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+..+|..++.++.+.|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCC
Confidence 34679999999999998874 3355677778888999999999999999999875 567889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE 287 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 287 (570)
++++|++.|+++.... +.+..+|..++.++...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998863 33677899999999999999999999999998642 245667788889999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
++.+.. +.+..++..+..++...|++++|...|+++...+ +.+...+..+..++...|++++|+..+++...... .+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 999873 3457889999999999999999999999999875 44678899999999999999999999999988632 25
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914 368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG 447 (570)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (570)
..++..+...+...|++++|...++.+.+.. +.+..++..++.++.+.|++++|...++++.+.. +.+..++..++..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 7788899999999999999999999999875 4567789999999999999999999999999876 7788999999999
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 038914 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNE 523 (570)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 523 (570)
+...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+. .| +...|..+...+...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999852 445688999999999999999999999999984 45 56778888777766553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.4e-28 Score=238.02 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC---------HHHH
Q 038914 318 RELFVSMESNGCMHDV-VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ---------VEHA 387 (570)
Q Consensus 318 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a 387 (570)
..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|...+. .+.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444333322 23555566666666666666666666666666666666666666554332 3444
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44555554444445555555555555555555555555555444444445555555555555555555555555555444
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914 468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519 (570)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (570)
|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 4445555555555555555555555555555544444445444444444443
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-26 Score=224.96 Aligned_cols=438 Identities=11% Similarity=-0.018 Sum_probs=225.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT 154 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (570)
...+...+..+.+.|++++|+..|++++... |+...+..+..++... |++++|+..++++++.+ +.+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV-------GDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH-------hhHHHHHHHHHHHhccC-hHHHHH
Confidence 4456666777777777777777777777663 5555555555544443 47777777777776653 224556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL 234 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (570)
+..++.++...|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+...+..-
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 6777777777777777777777777654 233333334444333333233333222222111111111100000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC---
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGV---------QPNVVTFTVIMDELCK---NGKMDGASRLLELMIL-----RGV--- 294 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--- 294 (570)
...............+...+..... +.+...+......+.. .|++++|..+++++.+ ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0000000111111111111111000 1112233333333333 5666666666666555 210
Q ss_pred -----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914 295 -----KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369 (570)
Q Consensus 295 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (570)
+.+..++..++.++...|++++|...++++...... ...+..+..++...|++++|+..++++..... .+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHH
Confidence 112334555555666666666666666666554322 55555666666666666666666666655422 2444
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (570)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++.++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 55556666666666666666666665543 2344555556666666666666666666665543 344555666666666
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCC-------hhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMAD-------VVTYNIMIHGLCN---DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (570)
..|++++|...++++.+.. |+ ...+..++.++.. .|++++|...++++.+.. +.+..++..+..++.
T Consensus 384 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 6666666666666655421 11 1255666666666 666666666666666532 224555566666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 038914 520 RNNETSKVIELLHRMDMR 537 (570)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~ 537 (570)
..|++++|...++++.+.
T Consensus 461 ~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADL 478 (514)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666666643
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.6e-28 Score=233.33 Aligned_cols=206 Identities=15% Similarity=0.192 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC-----
Q 038914 135 EAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF----- 208 (570)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 208 (570)
.+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.+ ++||..+|+.||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhh
Confidence 344455566655554443 358889999999999999999999999998 89999999999999987665
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914 209 ----VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR 284 (570)
Q Consensus 209 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 284 (570)
+++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914 285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT 346 (570)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (570)
+|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|...
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999988763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.7e-26 Score=226.62 Aligned_cols=430 Identities=11% Similarity=-0.003 Sum_probs=314.2
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
.|..+...|++++|+..|++++..+ |+..++..++.++.+.|++++|+..++++.+.+ +.+..++..++.+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHH
Confidence 3344555679999999999998874 678888888999999999999999999988865 4567788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGA 282 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 282 (570)
+...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999888753 344445555544444433333333333222221112111111111111111122222
Q ss_pred HHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CCCHhhHH
Q 038914 283 SRLLELMILRGV---------KPDTSTYNTLIDGYCL---TGKIDRARELFVSMES-----N--GC------MHDVVSYS 337 (570)
Q Consensus 283 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~ 337 (570)
..+...+..... +.+...+......+.. .|++++|...++++.. . .. +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222111111111 1124445555555554 8999999999999887 3 11 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 038914 338 ILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG 417 (570)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 417 (570)
.+..++...|++++|...++++..... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999998643 37788889999999999999999999998864 456778889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914 418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFL 497 (570)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (570)
++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998876 5677889999999999999999999999998853 3456789999999999999999999999
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 498 DMEAKGL-EPN----FVIFNTLMLGFIR---NNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 498 ~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
++.+..- .++ ...+..+..++.. .|++++|...++++.+.. +.+...+..++.++.+.|++++|++.|++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9987421 111 3488889999999 999999999999999753 44678889999999999999999998875
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=4e-25 Score=221.12 Aligned_cols=435 Identities=13% Similarity=0.087 Sum_probs=297.7
Q ss_pred HHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 038914 39 RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILI 117 (570)
Q Consensus 39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 117 (570)
...+...|......|++++|+..|+.+++.+| .++.+|..++.++.+.|++++|++.|+++++.. |+ ...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 35555667777788999999999999999998 789999999999999999999999999999874 43 34444444
Q ss_pred HHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914 118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT 197 (570)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
..+.. .|++++|+..|+ .... .|+. ....+..+...+...+|+..++.+....+.......|+ .
T Consensus 101 ~~~~~-------~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~ 164 (537)
T 3fp2_A 101 SANES-------LGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----N 164 (537)
T ss_dssp HHHHH-------HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----H
T ss_pred HHHHH-------cCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----H
Confidence 44444 569999999996 4433 2222 22234455566677889999999877532111112222 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC------
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAV-TYTSLICGFCY--------ANDWNEAKHLFIEMMDQGVQPN------ 262 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------ 262 (570)
..+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+.... +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 3344455566666665555443332 22211 22223222222 24788888888888875322 2
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 263 -VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN 341 (570)
Q Consensus 263 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (570)
..++..+...+...|++++|...++++... .|+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 318 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ 318 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 224666677788888888999888888876 4457777788888888888888888888887764 346777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914 342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK 421 (570)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 421 (570)
++...|++++|+..++++..... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 88888888888888888887532 245677778888888888888888888887764 4456677778888888888888
Q ss_pred HHHHHHHHHHcCCC-----CChhhHHHHHHHHHhc----------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 422 AVELFRTLRILKYE-----LNIVSYNCLIDGLCKH----------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 422 a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
|...++++.+.... .....+..+..++... |++++|...|+++.+.. +.+..++..++.++...
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 88888887654310 1112234445566666 88888888888887752 33557788888888888
Q ss_pred CChhHHHHHHHHHHHC
Q 038914 487 GQMDKAHGLFLDMEAK 502 (570)
Q Consensus 487 g~~~~A~~~~~~~~~~ 502 (570)
|++++|...|+++.+.
T Consensus 476 g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 476 EKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 8888888888888874
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.3e-24 Score=217.46 Aligned_cols=401 Identities=12% Similarity=0.039 Sum_probs=300.9
Q ss_pred HHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914 118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT 197 (570)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
..+...|..+...|++++|+..|++++... +.+..++..++.++.+.|++++|+..|+++.+.+ +.+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~ 97 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHH
Confidence 444445556666789999999999999875 3467889999999999999999999999999875 55688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChh-------
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG------VQPNVV------- 264 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------- 264 (570)
.++.++...|++++|++.|+.+ .. .|+ .....+..+...+....|...++.+.... ..|+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 9999999999999999999643 32 122 12223444555566677888888775531 111111
Q ss_pred -----------------------hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCC-------HhhHHHHHH
Q 038914 265 -----------------------TFTVIMDELCKN--------GKMDGASRLLELMILRGVKPD-------TSTYNTLID 306 (570)
Q Consensus 265 -----------------------~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~ 306 (570)
....+...+... |++++|..+++++.+... .+ ..++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGI 251 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHH
Confidence 112222222111 378889999998887632 22 224666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHH
Q 038914 307 GYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH 386 (570)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (570)
.+...|++++|...++.+.... |+...+..+..++...|++++|+..++++..... .+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHH
Confidence 8888999999999999998874 4577888899999999999999999999988632 367788889999999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 387 ALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999988764 4456788888999999999999999999998875 56677888999999999999999999999876
Q ss_pred CCC-----CCChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 467 VGL-----MADVVTYNIMIHGLCND----------GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 467 ~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
... ......+..+..++... |++++|...++++.+.. +.+..++..+..++...|++++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 421 01112244556777777 99999999999998852 346788889999999999999999999
Q ss_pred HHHHhCC
Q 038914 532 HRMDMRN 538 (570)
Q Consensus 532 ~~~~~~~ 538 (570)
+++.+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.2e-23 Score=205.34 Aligned_cols=385 Identities=11% Similarity=0.026 Sum_probs=231.5
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038914 137 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELF 216 (570)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 216 (570)
...+.++.... +.+..++..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|++.|
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33444444332 3456778888899999999999999999998764 456888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChhH
Q 038914 217 LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV---VTFTVI------------MDELCKNGKMDG 281 (570)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~ 281 (570)
+++.+.+ +.+..++..++.+|...|++++|...|+++.+.... +. ..+..+ ...+...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9988864 336788888999999999999999999998875322 23 444444 334667777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
|...++++.... +.+..++..++.++...|++++|...|+++.... +.+..++..++.+|...|++++|+..|+++..
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777653 3355666777777777777777777777766543 34566677777777777777777777777765
Q ss_pred CCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 038914 362 KGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN--- 437 (570)
Q Consensus 362 ~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 437 (570)
. .|+. ..+..+. .. . .......++..+...|++++|...|+++.+.. +.+
T Consensus 240 ~--~p~~~~~~~~~~-~~-------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~ 293 (450)
T 2y4t_A 240 L--DQDHKRCFAHYK-QV-------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEY 293 (450)
T ss_dssp H--CTTCHHHHHHHH-HH-------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHH
T ss_pred h--CCChHHHHHHHH-HH-------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHH
Confidence 4 2222 2222220 00 0 00011122445555555555555555555432 112
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038914 438 -IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLM 515 (570)
Q Consensus 438 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 515 (570)
..++..++.++.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++.+. .| +...+..+.
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 2245555555555566666666555555431 223455555555555566666666666555552 33 233333333
Q ss_pred H------------HHHhcC-----CHHHHHHHHHHHH-hCC--CCCC-------HHHHHHHHHHHHccCccccc
Q 038914 516 L------------GFIRNN-----ETSKVIELLHRMD-MRN--VMPD-------ASTLSIVVDLLVKNEISLNS 562 (570)
Q Consensus 516 ~------------~~~~~g-----~~~~a~~~~~~~~-~~~--~~p~-------~~~~~~l~~~~~~~g~~~~a 562 (570)
. .|...| +.+++.+.++++. +.. ..|+ ...+..+..++...|+..+.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1 222333 5566677776632 211 0122 23667777777776665543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.3e-23 Score=201.45 Aligned_cols=326 Identities=12% Similarity=0.044 Sum_probs=228.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038914 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI 269 (570)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 269 (570)
+.+...+..++..+.+.|++++|+++|+++.... +.+..++..++.++...|++++|+..++++.+.+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4567788888888888888888888888888753 34678888888888888888888888888887643 356777888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 270 MDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK 345 (570)
Q Consensus 270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (570)
+.++...|++++|...|+++.+. .|+. ..+..++..+.. ..+..+...+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 88888888888888888888875 3332 334333332100 011222334455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
.|++++|+..|+++.... +.+...+..++..+...|++++|..+++.+.+.. +.+..++..++.+|...|++++|...
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555432 1244455555555556666666666665555432 33455566666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHH------------HHHHHHhcCCHHHHHHHHHhhhhCCCCCC-----hhhHHHHHHHHHhcCC
Q 038914 426 FRTLRILKYELNIVSYNC------------LIDGLCKHGRLEIAWELFSSLPRVGLMAD-----VVTYNIMIHGLCNDGQ 488 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~ 488 (570)
|+++.... +.+...+.. ++.++...|++++|...|+++.+. .|+ ...+..++.++.+.|+
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 66665543 333333333 378899999999999999999884 454 3478889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914 489 MDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVV 550 (570)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 550 (570)
+++|+..++++.+.. +.+..+|..++.+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 999999999998852 346889999999999999999999999999964 454 55666666
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.3e-19 Score=176.44 Aligned_cols=363 Identities=12% Similarity=0.012 Sum_probs=270.9
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh----cCC
Q 038914 137 AALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK----KGF 208 (570)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 208 (570)
...+.+..+.| +..++..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .++
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence 44455554432 56677777777777 788888888888887653 56777778888887 788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChh
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK----NGKMD 280 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 280 (570)
+++|.+.|++..+.| +...+..|...|.. .+++++|+.+|++..+.+ +...+..+...|.. .++++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 888888888887764 56677777777777 778888888888887764 55667777777776 67888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 038914 281 GASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----TKDVEEG 352 (570)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 352 (570)
+|.+.|++..+.+ +...+..+..+|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8888888887764 56677777777777 788888888888887764 56667777777775 7788888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----CCHHHHH
Q 038914 353 LNLYRKMLSKGIRPTVVTYHTLFLGLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-----GYIVKAV 423 (570)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 423 (570)
..+|++..+.+ +...+..+...+.. .++.++|..+|+...+.+ +...+..+...|... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 88888887753 45566666666666 788888888888877654 455666677777776 7888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHH
Q 038914 424 ELFRTLRILKYELNIVSYNCLIDGLCKHG---RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLF 496 (570)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 496 (570)
..+++..+.+ +...+..+...|...| ++++|...|++..+. .+...+..+...|.. .+++++|..+|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8888887754 4556677777777656 678888888888775 356677778888877 78888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038914 497 LDMEAKGLEPNFVIFNTLMLGFIR----NNETSKVIELLHRMDMRN 538 (570)
Q Consensus 497 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 538 (570)
++..+.| +...+..+...|.. .+++++|..++++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888754 56677777777777 788888888888888655
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.8e-20 Score=175.59 Aligned_cols=330 Identities=11% Similarity=0.023 Sum_probs=215.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038914 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMD 271 (570)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 271 (570)
++..+..++..+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888887753 3367778888888888888888888888887753 225567777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 038914 272 ELCKNGKMDGASRLLELMILRGVK--PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV 349 (570)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (570)
++...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888888765210 12233333311100 01122234455666666
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 350 EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429 (570)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 429 (570)
++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666665542 2244555666666666666666666666666543 445556666666666666666666666666
Q ss_pred HHcCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-h----hhHHHHHHHHHhcCChhHH
Q 038914 430 RILKYELNIVSYN------------CLIDGLCKHGRLEIAWELFSSLPRVGLMAD-V----VTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 430 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A 492 (570)
.+.. +.+...+. .++..+...|++++|...++++.+.. |+ . ..+..++.++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6543 23333222 23556778888888888888887743 33 2 2344577788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038914 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLV 554 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 554 (570)
...++++.+.. +.+..++..+..++...|++++|...++++.+. .|+ ...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 88888888752 336778888888888888888888888888854 344 455555555543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.2e-20 Score=174.38 Aligned_cols=299 Identities=10% Similarity=0.019 Sum_probs=189.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHH
Q 038914 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ--PNVVTFT 267 (570)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 267 (570)
+.+..++..+..++...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.... .+...+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 4457889999999999999999999999999863 337789999999999999999999999999986320 1334444
Q ss_pred HH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914 268 VI------------MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS 335 (570)
Q Consensus 268 ~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (570)
.+ ...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 190 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44 344445555555555555554432 2234444444555555555555555555544432 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
+..+..++...|++++|...++++.+.... +...+..+ ..+. .......+...+..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY-----------------KQVK------KLNKLIESAEELIR 246 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH-----------------HHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH-----------------HHHH------HHHHHHHHHHHHHH
Confidence 444555555555555555555544442110 11111000 0000 00112233566778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 416 NGYIVKAVELFRTLRILKYELNI----VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 247 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888889988888887764 3333 234457778888999999999999888752 3366788888888999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 038914 492 AHGLFLDMEAKGLEPN-FVIFNTLMLGFI 519 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (570)
|...|+++.+. .|+ ...+..+..+..
T Consensus 325 A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 325 AIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 99999988884 454 555555554443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.9e-18 Score=167.61 Aligned_cols=368 Identities=14% Similarity=0.019 Sum_probs=303.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK 205 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (570)
.+++++|...|++..+.| +..++..|...|.. .+++++|+.+|+++.+.+ +...+..|...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHE 123 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHc
Confidence 469999999999998864 56788889999998 899999999999998754 57788889999988
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--
Q 038914 206 ----KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK-- 275 (570)
Q Consensus 206 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 275 (570)
.+++++|++.|++..+.| +...+..|...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 124 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 124 GNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL 197 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence 889999999999998875 67788888888887 889999999999999874 67788889999988
Q ss_pred --cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 038914 276 --NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILINGYCK---- 345 (570)
Q Consensus 276 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 345 (570)
.+++++|..+|++..+.+ +...+..+..+|.. .+++++|..+|++..+.+ +...+..+..+|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 899999999999999875 56677788888886 889999999999998875 56677788888887
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhc-----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEV-----HQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG--- 417 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 417 (570)
.+++++|+.+|++..+.| +...+..+...+... +++++|...++...+.+ +...+..+...|...|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 899999999999998764 566777788888776 89999999999998865 4567777888887766
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCCh
Q 038914 418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQM 489 (570)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 489 (570)
++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999998864 67788889999988 899999999999999864 57788889999988 8999
Q ss_pred hHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 490 DKAHGLFLDMEAKGLE-P-NFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
++|...|++..+.+.. | +......+...+. .+.+.+.+...+..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~ 465 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYI 465 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHH
Confidence 9999999999987532 2 3333344433222 23344444444444
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.3e-18 Score=172.87 Aligned_cols=433 Identities=12% Similarity=0.070 Sum_probs=274.6
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHHHH
Q 038914 61 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAAAL 139 (570)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~ 139 (570)
+|+.+++.+| .+..+|..++.. .+.|++++|+.+|++++.. .| +...+...+..+.+. |++++|..+
T Consensus 1 ~le~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~-------~~~~~a~~~ 68 (530)
T 2ooe_A 1 MAEKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKA-------KNYDKVEKL 68 (530)
T ss_dssp CHHHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred ChhhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhc-------CCHHHHHHH
Confidence 3677888888 899999999984 7899999999999999987 45 445566666666554 599999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHH-HhcCChhHHHH----HHHHHHhCCCCCCcccCCChhhHHHHHHHHHh---------
Q 038914 140 FTKLRVFGCEPDVFTYNTLINGL-CRTGHTIVALN----LFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK--------- 205 (570)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 205 (570)
|++++.. .|+...|..++... ...|+.+.|.+ +|+.+...-+. .+++...|...+.....
T Consensus 69 ~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 69 FQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp HHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred HHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHH
Confidence 9999987 45777777777533 45688877765 77777653210 12356778887776655
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRL 285 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 285 (570)
.|++++|..+|++.+..........|..........|. ..+..++ . ...+++..|..+
T Consensus 143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l----~-----------------~~~~~~~~A~~~ 200 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMI----E-----------------DRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHH----H-----------------TTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHH----H-----------------HhhHHHHHHHHH
Confidence 68899999999999883111112333322221111110 0000000 0 012233444444
Q ss_pred HHHH------HHCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914 286 LELM------ILRG---VKPD--------TSTYNTLIDGYCLT----GKI----DRARELFVSMESNGCMHDVVSYSILI 340 (570)
Q Consensus 286 ~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (570)
+... .+.. ++|+ ...|...+...... ++. ..+..+|++++... +.+...|..++
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~ 279 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4331 1111 1222 12333333322221 222 35667777766653 34666777777
Q ss_pred HHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcC-HHH
Q 038914 341 NGYCK-------TKDVE-------EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAAN-TYI 405 (570)
Q Consensus 341 ~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 405 (570)
..+.+ .|+++ +|..+|++.++.-.+.+...+..++..+...|++++|..+|+.+.+.. +.+ ...
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 358 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHH
Confidence 76664 57766 788888887762122346667777777777888888888888877752 222 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG-LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC 484 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (570)
|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+..++.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 7777777777888888888888887653 2233333332222 335788888888888887742 335677888888888
Q ss_pred hcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 485 NDGQMDKAHGLFLDMEAKG-LEP--NFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..|+.++|..+|++++..+ ..| ....|...+......|+.+.+..+.+++.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888752 222 2446777777777788888888888888743
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=9.3e-20 Score=169.82 Aligned_cols=302 Identities=12% Similarity=0.018 Sum_probs=194.0
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 228 (570)
+.+...+..++..+...|++++|+.+|+++.+.+ +.+...+..++.++...|++++|..+++++.+.. +.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH
Confidence 4456667777777777888888888888887764 4455666677777777888888888888777653 3356
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038914 229 VTYTSLICGFCYAN-DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDG 307 (570)
Q Consensus 229 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (570)
..+..+...+...| ++++|...++++..... .+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 67777777777777 77777777777776532 245566677777777777777777777776653 2234445556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHH
Q 038914 308 YCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA 387 (570)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (570)
+...|++++|...++++.... +.+...+..+..++...|++++|...++++........ +
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~---- 228 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG---------------N---- 228 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------C----
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------c----
Confidence 666666666666666666553 33455556666666666666666666665554210000 0
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
....+....++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 229 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 229 --------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp --------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred --------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 00112334566667777777777777777777776654 456667777777777778888888888777764
Q ss_pred CCCCChhhHHHHHHHH-HhcCChh
Q 038914 468 GLMADVVTYNIMIHGL-CNDGQMD 490 (570)
Q Consensus 468 ~~~~~~~~~~~l~~~~-~~~g~~~ 490 (570)
. +.+...+..+..++ ...|+.+
T Consensus 300 ~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp C-SCCHHHHHHHHHHHHTTTTC--
T ss_pred C-CCchHHHHHHHHHHHHHhCchh
Confidence 2 23456666666666 3445443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.3e-19 Score=168.77 Aligned_cols=291 Identities=9% Similarity=-0.081 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN 341 (570)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (570)
+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..+++++.... +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34444555555555555555555555555442 2233444445555555555556655555555543 224455555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914 342 GYCKTK-DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV 420 (570)
Q Consensus 342 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (570)
.+...| ++++|+..|+++..... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555666 56666666666555421 134455555566666666666666666655543 223444555666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--------CCCChhhHHHHHHHHHhcCChhHH
Q 038914 421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG--------LMADVVTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A 492 (570)
+|...++++.+.. +.+..++..++..+...|++++|...++++.+.. .+....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666666554 4455666666666666677777766666665421 022345666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCcc
Q 038914 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL-VKNEIS 559 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 559 (570)
...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 77777776642 2345666667777777777777777777776432 23455666666666 344443
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2.1e-18 Score=171.39 Aligned_cols=408 Identities=12% Similarity=0.059 Sum_probs=270.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
.|++++|+.+|+++++..| .+...|..++..+.+.|++++|+.+|++++.. .|+...+...+...... .|
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~------~~ 94 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRET------KG 94 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHH------TT
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHH------cc
Confidence 5799999999999999998 88999999999999999999999999999988 46665555554432221 24
Q ss_pred CHHHHHH----HHHHHHhc-CCCC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914 132 RIMEAAA----LFTKLRVF-GCEP-DVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEIGVVCKPDTVTY 196 (570)
Q Consensus 132 ~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (570)
++++|.+ +|++.+.. |..| +...|...+....+ .|+++.|..+|+++.+.. .......|
T Consensus 95 ~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P------~~~~~~~~ 168 (530)
T 2ooe_A 95 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP------MINIEQLW 168 (530)
T ss_dssp TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC------CTTHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch------hhhHHHHH
Confidence 5555554 77776653 4443 34577777776654 689999999999998731 11112333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC-----
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEM------MDQG---VQPN----- 262 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~----- 262 (570)
..........|. ..+..++. ...+++..|..++..+ .+.. ++|+
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 332221111110 00111110 0123344444444431 1111 1222
Q ss_pred ---hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCHH-------HH
Q 038914 263 ---VVTFTVIMDELCKN----GKM----DGASRLLELMILRGVKPDTSTYNTLIDGYCL-------TGKID-------RA 317 (570)
Q Consensus 263 ---~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a 317 (570)
...|...+...... ++. ..+..+|++++... +.+...|..++..+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 12344333322221 222 36677788877752 3456677777776664 67776 88
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT-V-VTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|...+..+.+.|+++.|..+|+...
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888876323456778888888888888888888888888885 333 2 467777777778888888998888887
Q ss_pred hCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC-CCCC-
Q 038914 396 RNHVAANTYIYTTFIDG-LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG-LMAD- 472 (570)
Q Consensus 396 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~- 472 (570)
+.. +.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 753 2233333332222 345889999999999888764 5567888888888889999999999999988753 1222
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 473 -VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
...|...+......|+.+.+..+++++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346777788888889999999999888874
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.8e-19 Score=170.64 Aligned_cols=288 Identities=11% Similarity=-0.002 Sum_probs=152.8
Q ss_pred hcCCHHHHHH-HHHHHHHCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914 240 YANDWNEAKH-LFIEMMDQGV---QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKID 315 (570)
Q Consensus 240 ~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (570)
..|++++|+. .+++...... ..+...+..+...+...|++++|...++++++.. +.+...+..++.++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466677766 6665443311 1124456667777777777777777777777653 335566777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHhh
Q 038914 316 RARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHT---------------LFLGLFE 380 (570)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 380 (570)
+|...++++.... +.+..++..+..++...|++++|+..++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 7777777776654 346667777777777777777777777777765322 1111111 1111224
Q ss_pred cCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914 381 VHQVEHALKLFDEMRRNHVAA-NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459 (570)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (570)
.|++++|...++.+.+..... +..++..+..++...|++++|...++++.... +.+..++..++.++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554432111 34455555555555555555555555555443 3344455555555555555555555
Q ss_pred HHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHH
Q 038914 460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE----------PNFVIFNTLMLGFIRNNETSKVIE 529 (570)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~ 529 (570)
.|+++.+.. +.+..++..++.+|...|++++|...|+++.+..-. ....+|..+..++...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 555555431 223344555555555555555555555555442100 013445555555555555555555
Q ss_pred HHH
Q 038914 530 LLH 532 (570)
Q Consensus 530 ~~~ 532 (570)
+++
T Consensus 352 ~~~ 354 (368)
T 1fch_A 352 ADA 354 (368)
T ss_dssp HHT
T ss_pred hHH
Confidence 444
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.6e-19 Score=171.10 Aligned_cols=312 Identities=13% Similarity=0.018 Sum_probs=230.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHH
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR-LLELMILRGV---KPDTSTYNTLIDGYCLTGKID 315 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 315 (570)
..+.|+.+...|+.+...+ |+ ++...|++++|.. .+++...... ..+...+..+...+...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred CcccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3445555566666665432 11 2334578888888 8876654421 113456888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 316 RARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
+|...++++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 4578889999999999999999999999999864 3367889999999999999999999999998
Q ss_pred hCCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 038914 396 RNHVAANTYIYTT---------------FIDGLCKNGYIVKAVELFRTLRILKYEL--NIVSYNCLIDGLCKHGRLEIAW 458 (570)
Q Consensus 396 ~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 458 (570)
+.... +...+.. .+..+...|++++|...++++.+.. +. +..++..++.++...|++++|.
T Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 86422 2222211 1333348899999999999998875 33 5788999999999999999999
Q ss_pred HHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914 459 ELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRN 538 (570)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (570)
..++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus 238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998853 4456889999999999999999999999998852 3467889999999999999999999999998532
Q ss_pred CC----------CCHHHHHHHHHHHHccCcccccchhhhh
Q 038914 539 VM----------PDASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 539 ~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
-. ....++..++.++...|+.++|...+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 11 1268999999999999999999888764
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.2e-16 Score=162.19 Aligned_cols=413 Identities=11% Similarity=0.106 Sum_probs=261.4
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914 72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL-FPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE 149 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (570)
..++.--...+.+|...|.+.+|+++|+++.-.+- ..+. ..-..++.+..+. +..+.....+++..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--------D~~Rv~eyI~kLd~---- 1049 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--------DRTRVMEYINRLDN---- 1049 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--------ChhhHHHHHHHhhh----
Confidence 34445555677778888888888888888884311 0111 2222233333332 33333333333321
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV 229 (570)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 229 (570)
.....+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..
T Consensus 1050 ---~d~~eIA~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A 1050 ---YDAPDIANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred ---ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence 1133466777778888888888888531 1222233322 6677888888877552 466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038914 230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC 309 (570)
Q Consensus 230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (570)
+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++......++.+|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 7788888888888888888888553 256677778888888888888888888777653 33333445777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038914 310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALK 389 (570)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 389 (570)
+.+++++.... .+ .++...+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|.+
T Consensus 1179 Kl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 88777753333 22 235556667888888888888888888764 367778888888888888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914 390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL 469 (570)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (570)
.++.. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+...
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le- 1310 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE- 1310 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 88765 35577777777888888888877766542 3455666677888888888888888887776643
Q ss_pred CCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038914 470 MADVVTYNIMIHGLCND--GQMDKAHGLFLDMEAKGLEP------NFVIFNTLMLGFIRNNETSKVIELLHRMDMR---- 537 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 537 (570)
+-....|..+...+++. ++..++.++|..-.. ++| +...|..++..|.+.|+++.|...+-+-...
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 22334566666666553 345555555543322 222 3556777788888888888877322111100
Q ss_pred -------CCCCCHHHHHHHHHHHHccC
Q 038914 538 -------NVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 538 -------~~~p~~~~~~~l~~~~~~~g 557 (570)
.-..+.+.+...+..|...+
T Consensus 1389 ~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1389 GQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 11345666666666666555
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=8.1e-16 Score=158.11 Aligned_cols=406 Identities=14% Similarity=0.181 Sum_probs=294.8
Q ss_pred CCCChhHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 51 TTITPNDALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
..|.+.+|+.++++++ ..|+ ..+...-+.++.+..+. +..+..++..+.-.. + ...+-..+..
T Consensus 997 ~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~------ 1061 (1630)
T 1xi4_A 997 TADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAIS------ 1061 (1630)
T ss_pred hCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHh------
Confidence 5789999999999998 3342 24556666677766666 445555555555422 1 1222333333
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (570)
.|.+++|..+|++.. ....+.+.++ ...+++++|.++.++.. +..+|..+..++...|+
T Consensus 1062 -lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1062 -NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred -CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCC
Confidence 469999999999852 1222223333 26788999999988652 36789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914 209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLEL 288 (570)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 288 (570)
+++|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 277888899999999999999999999887754 34334446888999998888644432
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 038914 289 MILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV 368 (570)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 368 (570)
+ .++...+..+...|...|++++|..+|..+ ..|..+..++.+.|++++|++.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 345566777999999999999999999885 368899999999999999999998772 66
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914 369 VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGL 448 (570)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (570)
.+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+.+...|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 88888899999999999988876543 3456677788999999999999999998887665 45566777777676
Q ss_pred Hhc--CCHHHHHHHHHhhhhCCCCC------ChhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHCCCCCC
Q 038914 449 CKH--GRLEIAWELFSSLPRVGLMA------DVVTYNIMIHGLCNDGQMDKAHGLF-------------LDMEAKGLEPN 507 (570)
Q Consensus 449 ~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~ 507 (570)
.+. ++..++.+.|..-.. +++ +...|..++..|.+.|+++.|.... ...+. -..|
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 654 456666666665443 333 4567888999999999999988332 12111 1335
Q ss_pred HHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 038914 508 FVIFNTLMLGFIRNN---------------ETSKVIELLH 532 (570)
Q Consensus 508 ~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 532 (570)
...|...+..|...+ +++.+.+++.
T Consensus 1401 ~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 666666666666655 6666666665
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2e-19 Score=170.01 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=196.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN 341 (570)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (570)
+...+..++..+.+.|++++|..+|+++++.. +.+..++..++.++...|++++|...|+++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777788888888888888888887763 3466778888888888888888888888887764 346777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC---------CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH
Q 038914 342 GYCKTKDVEEGLNLYRKMLSKGIR---------PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVA-ANTYIYTTFID 411 (570)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 411 (570)
+|...|++++|+..++++.+.... .....+..+...+...|++++|..+++.+.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888888764211 01122334467778888889999888888876422 15778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
.+...|++++|...++++.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+..++..++.+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 8888899999999998888775 5677888888888999999999999999888752 3346788888888999999999
Q ss_pred HHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 492 AHGLFLDMEAKGLEP-------------NFVIFNTLMLGFIRNNETSKVIELLHR 533 (570)
Q Consensus 492 A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 533 (570)
|...|+++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999888763 12 256788888888888888888777655
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-17 Score=162.53 Aligned_cols=392 Identities=10% Similarity=-0.075 Sum_probs=242.8
Q ss_pred HhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCC-HhhHHHHHHHHHhcCCcchhhCCHHHHH
Q 038914 66 LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST-----G--LFPD-LYAYNILINCFLQNGSSLCVESRIMEAA 137 (570)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~A~ 137 (570)
++..+.......|+.++.++...|++++|++.|+++++. + ..|+ ..++..+-.. +...|++++|.
T Consensus 42 ~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~-------y~~~g~~~~A~ 114 (472)
T 4g1t_A 42 TEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV-------YYHMGRLSDVQ 114 (472)
T ss_dssp TTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH-------HHHTTCHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH-------HHHcCChHHHH
Confidence 334443455678999999999999999999999998753 0 1222 2334444444 44457999999
Q ss_pred HHHHHHHhcC------CCC-CcchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH---HHh
Q 038914 138 ALFTKLRVFG------CEP-DVFTYNTLINGLCRT--GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG---LCK 205 (570)
Q Consensus 138 ~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~ 205 (570)
..++++.... ..+ ...++..+..++... +++++|+..|+++.+.+ +.+...+..+..+ +..
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcC
Confidence 9999887531 111 234566666555554 57999999999999865 3345566555554 445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
.++.++|++.+++..+.+ +.+..++..+...+.. .+++++|...+++..... +.+..++..+...+...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 688899999999988764 3356666666655544 467889999999988764 3467788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
|...++++.+.. +.+..++..+..+|...+... .... ...........+.++.|...+++...
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999998863 335566666666553321111 0000 00001111122345677888887776
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 038914 362 KGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY--IYTTFID-GLCKNGYIVKAVELFRTLRILKYELNI 438 (570)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 438 (570)
... .+..++..+...+...|++++|+..|++..+....+... .+..+.. .....|++++|+..|++..+.. |+.
T Consensus 329 ~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~ 405 (472)
T 4g1t_A 329 AND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKS 405 (472)
T ss_dssp HCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCC
T ss_pred cCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccc
Confidence 532 245667778888888888888888888887754333221 2222222 2346788889999888888764 433
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG 503 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (570)
..... ....+.++++.....+ +.+..+|..++.+|...|++++|++.|+++++.+
T Consensus 406 ~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 406 REKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22221 2234455566655542 4466788899999999999999999999988753
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.9e-17 Score=157.33 Aligned_cols=360 Identities=12% Similarity=-0.030 Sum_probs=236.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 038914 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDE--------NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-----G 258 (570)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 258 (570)
....|+.|..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888888888888888888888876542 12224567888888888888888888888877642 1
Q ss_pred -C-CCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 038914 259 -V-QPNVVTFTVIMDELCKN--GKMDGASRLLELMILRGVKPDTSTYNTLIDG---YCLTGKIDRARELFVSMESNGCMH 331 (570)
Q Consensus 259 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 331 (570)
. .....++.....++... +++++|+..|+++++.. +.+...+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 11234555555555443 46888888888888763 2234444444443 344567778888888877764 33
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914 332 DVVSYSILINGYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT 407 (570)
Q Consensus 332 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (570)
+...+..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...++...+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55556555544443 456778888888877753 2356677888888888888888888888887754 34555666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914 408 TFIDGLCKN-------------------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG 468 (570)
Q Consensus 408 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (570)
.+..+|... +.++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 665554321 34567888888887766 5677788899999999999999999999998754
Q ss_pred CCCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 469 LMADV--VTYNIMIH-GLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAST 545 (570)
Q Consensus 469 ~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 545 (570)
..+.. ..+..++. .....|++++|+..|+++++ +.|+....... .+.+.+++++.+..+ +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHH
Confidence 33222 12333333 23467899999999999988 45654332222 234455666666543 456788
Q ss_pred HHHHHHHHHccCcccccchhhhh
Q 038914 546 LSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 546 ~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
+..++.++...|++++|++.|++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999998876
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=3e-18 Score=161.97 Aligned_cols=275 Identities=11% Similarity=-0.052 Sum_probs=180.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038914 193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE 272 (570)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (570)
...+..++..+.+.|++++|++.|+++.... +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446677777777777777777777776653 3356667777777777777777777777766643 2245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914 273 LCKNGKMDGASRLLELMILRGVKPDT-STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEE 351 (570)
Q Consensus 273 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (570)
+...|++++|...++++.+.. |+. ..+..+. .....+..+..++...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666777777777666666542 111 1111110 012233445666777777777
Q ss_pred HHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 352 GLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 352 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
|+..++++...... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777765322 146677777777777888888888887777653 4467778888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-----------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914 431 ILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM-----------ADVVTYNIMIHGLCNDGQMDKAHGLFLD 498 (570)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (570)
+.. +.+..++..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 765 556778888888888889999988888888763100 1256788899999999999888877654
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.4e-17 Score=153.31 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=112.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.++ +|...+..++..+...
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~------- 74 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS------- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC-------
Confidence 456788999999888 23358999999999999999999999653 4555677777766554
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD 210 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (570)
|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|+++
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------------CC----------------CTT
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHH
Confidence 5888888877766654 4456778888888888888888777663 255668888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMI 290 (570)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 290 (570)
+|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 140 eA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L- 203 (449)
T 1b89_A 140 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI- 203 (449)
T ss_dssp THHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-
T ss_pred HHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-
Confidence 888888866 35888888888888888888888877 26778888888888888888885544432
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 038914 291 LRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRP--- 366 (570)
Q Consensus 291 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--- 366 (570)
...+.....++..|.+.|.+++|..+++..+... +.....|+.+.-+|++- .+++..+.++...+. +++|
T Consensus 204 ----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 204 ----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHH
T ss_pred ----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHH
Confidence 2233334467777888888888888888877654 34556666666666553 333333333322221 1111
Q ss_pred ---ChhhHHHHHHHHhhcCCHHHHHH
Q 038914 367 ---TVVTYHTLFLGLFEVHQVEHALK 389 (570)
Q Consensus 367 ---~~~~~~~l~~~~~~~~~~~~a~~ 389 (570)
+...|..+...|.+.++++.|..
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 23445555556666666665554
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=8.2e-18 Score=156.38 Aligned_cols=262 Identities=11% Similarity=-0.057 Sum_probs=169.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK 345 (570)
Q Consensus 266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (570)
+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.... +.+...+..+..++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2234444455555555555555555555554442 2244455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTL--------------FL-GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI 410 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (570)
.|++++|+..++++...... +...+..+ .. .+...|++++|...++.+.+.. +.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 55555555555555553211 11111111 22 3667788888888888877654 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChh
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMD 490 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 490 (570)
..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 88888888888888888887765 5567778888888888888888888888887753 335677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 491 KAHGLFLDMEAKGLEPN-------------FVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 491 ~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
+|...++++.+. .|+ ..+|..+..++...|++++|..++++.+
T Consensus 258 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888888764 233 5677888888888888888888876543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1e-18 Score=160.73 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=136.5
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCCCH
Confidence 468999999999982 3359999999999999999999999653 4677999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877764 4467889999999999999999988874 367779999999999999999999999976
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914 290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369 (570)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (570)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 47899999999999999999999988 278999999999999999999966555432 3444
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCC------ChhhHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR-ILKYEL------NIVSYN 442 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~ 442 (570)
....++..|.+.|++++++.+++...... +-....|+.+..+|++- ++++..+.++... +.++++ +...|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46678899999999999999999998765 55667788777777664 3444444443322 122222 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 038914 443 CLIDGLCKHGRLEIAWELFS 462 (570)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~ 462 (570)
.+...|...++++.|....-
T Consensus 287 e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHH
Confidence 99999999999998877543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1e-17 Score=155.68 Aligned_cols=266 Identities=8% Similarity=-0.071 Sum_probs=221.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914 297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL 376 (570)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (570)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34566778889999999999999999998865 4477889999999999999999999999999863 336778889999
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914 377 GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTF--------------ID-GLCKNGYIVKAVELFRTLRILKYELNIVSY 441 (570)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (570)
.+...|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998764 2223333332 22 3677889999999999998876 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN 521 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (570)
..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998853 4456889999999999999999999999998852 34678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccCcccccchhhhh
Q 038914 522 NETSKVIELLHRMDMRNVMP-----------DASTLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
|++++|...++++.+..-.. +...+..+..++.+.|+.++|...+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999998643111 467889999999999999999888764
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.1e-17 Score=149.49 Aligned_cols=219 Identities=9% Similarity=0.055 Sum_probs=99.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC
Q 038914 269 IMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGC-MHDVVSYSILINGYCKTK 347 (570)
Q Consensus 269 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 347 (570)
+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|++.++++...+. +.+...+..+..++...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444443322 1123333444444444444444555555444444331 223333444444444555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHHhcCCHHHHHH
Q 038914 348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYI---YTTFIDGLCKNGYIVKAVE 424 (570)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 424 (570)
++++|++.+++ +.+...+..++..+.+.|++++|...++.+.+.. |+... ....+..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 55555544443 1233444444444445555555555554444432 22110 0111122223355555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHH
Q 038914 425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK-AHGLFLDMEA 501 (570)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 501 (570)
+|+++.+.. +.+...++.++.++...|++++|...|+++++.. +.+..++..++.++...|+.++ +.++++++.+
T Consensus 188 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 188 IFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555543 4455555555555555555555555555555532 2234455555555555555543 3455555554
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=8.5e-17 Score=145.47 Aligned_cols=258 Identities=10% Similarity=0.034 Sum_probs=209.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038914 200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKM 279 (570)
Q Consensus 200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 279 (570)
+.-....|++..|+..++................+..+|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345667899999999998876542211134556778999999999999987654 2355677888889999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 280 DGASRLLELMILRGVKP-DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRK 358 (570)
Q Consensus 280 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (570)
++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999876444 556677778999999999999999987 45788999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHH----HHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038914 359 MLSKGIRPTVVTYHTL----FLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY 434 (570)
Q Consensus 359 ~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 434 (570)
+.+.. |+.. ...+ +..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99863 4432 2222 233445689999999999999874 6788899999999999999999999999999886
Q ss_pred CCChhhHHHHHHHHHhcCCHHH-HHHHHHhhhhCCCCCChh
Q 038914 435 ELNIVSYNCLIDGLCKHGRLEI-AWELFSSLPRVGLMADVV 474 (570)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 474 (570)
+.+..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 6788899999999999999876 67899999884 56543
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=2.1e-16 Score=152.63 Aligned_cols=314 Identities=11% Similarity=0.005 Sum_probs=149.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH---HHHHHHHHHHHhcCCCCCcchH
Q 038914 79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI---MEAAALFTKLRVFGCEPDVFTY 155 (570)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~ 155 (570)
..++..+.+.|++++|+++|+++.+.| .++ ++..+|..+...|+. ++|..+|++..+. ++.++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~---------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~ 72 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSE---------AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCT---------GGGTCC--------------------------------CH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHH---------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHH
Confidence 346667777888888888888887665 222 223334444445566 7888888877643 55566
Q ss_pred HHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC
Q 038914 156 NTLINGLCRTG-----HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK---AKELFLKMKDENINPN 227 (570)
Q Consensus 156 ~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~ 227 (570)
..|...+...+ ++++|+..|++..+.+ +...+..|...|...+..++ +.+.+......| +
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~ 140 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANG---------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---Y 140 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---C
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---C
Confidence 66666555544 6677888888877754 23366667777766554333 333344333333 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038914 228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG---KMDGASRLLELMILRGVKPDTSTYNTL 304 (570)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l 304 (570)
...+..|...|...+.++++......+.+.-...++..+..+...|...| +.++|+..|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 44555566666666644444433222222111223335566666666666 6666666666666654 2333333445
Q ss_pred HHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914 305 IDGYCLT----GKIDRARELFVSMESNGCMHDVVSYSILING-Y--CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG 377 (570)
Q Consensus 305 ~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (570)
..+|... +++++|..+|++.. .| +...+..+..+ + ...+++++|+.+|++..+.| +......+...
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 5555433 45666666666655 22 44444444444 2 34555566666666555543 33444444444
Q ss_pred HhhcC-----CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 038914 378 LFEVH-----QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----NGYIVKAVELFRTLRI 431 (570)
Q Consensus 378 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 431 (570)
|. .| ++++|..+|+... +.+......+...|.. ..++++|..+|++..+
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 43 23 5555555554443 1233333334433333 1244444444444443
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=9.4e-17 Score=155.11 Aligned_cols=343 Identities=13% Similarity=0.043 Sum_probs=223.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHH
Q 038914 157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV---DKAKELFLKMKDENINPNAVTYTS 233 (570)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ 233 (570)
.+...+.+.|++++|+++|+++.+.+ +...+..|...|...|+. ++|++.|++..+. ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence 35666778899999999999987754 445566677777777877 8999999888764 5556666
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHhhHHHHH
Q 038914 234 LICGFCYAN-----DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG---ASRLLELMILRGVKPDTSTYNTLI 305 (570)
Q Consensus 234 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~ 305 (570)
|...+...+ ++++|+.+|++..+.|. ...+..+...|...+..++ +.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 766555554 77889999998888653 3367777777777665443 445555554444 345566677
Q ss_pred HHHHhcCCHHHHH----HHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038914 306 DGYCLTGKIDRAR----ELFVSMESNGCMHDVVSYSILINGYCKTK---DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGL 378 (570)
Q Consensus 306 ~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (570)
..|...+.++++. .+++..... ++..+..+..+|...| +.++|+..|++..+.|.. +...+..+...|
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 7777777544444 344433332 4447888888888888 888999999998887643 455446666666
Q ss_pred hhc----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 379 FEV----HQVEHALKLFDEMRRNHVAANTYIYTTFIDG-L--CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 379 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
... +++++|..+|+... +.+...+..+... + ...+++++|...|++..+.+ +...+..+...|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 554 78899999998876 3355566666665 3 45789999999999888765 6667777777776 5
Q ss_pred C-----CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 038914 452 G-----RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR-- 520 (570)
Q Consensus 452 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 520 (570)
| ++++|...|++.. . .+...+..|...|.. ..++++|..+|++..+.| +......+...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCC
Confidence 5 8999999999887 3 356677777777766 348899999999988865 33445556666653
Q ss_pred --cCCHHHHHHHHHHHHhCC
Q 038914 521 --NNETSKVIELLHRMDMRN 538 (570)
Q Consensus 521 --~g~~~~a~~~~~~~~~~~ 538 (570)
..+.++|..++++..+.|
T Consensus 369 g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 458889999999988776
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=9.4e-17 Score=150.00 Aligned_cols=251 Identities=9% Similarity=0.025 Sum_probs=184.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCC-HHHHHHHHHHHHhcCCCC
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESR-IMEAAALFTKLRVFGCEP 150 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~ 150 (570)
.+..+|..++.++...|++++|++.|++++.. .|+ ...+..+-..+... |+ +++|+..|++++... +.
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~-------g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSL-------QKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHC-TT
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHHC-CC
Confidence 56677888888888888888888888888877 454 34445555555554 45 888888888888874 23
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+..+|+.+..++...|++++|+..|+++++.+ +.+..+|..+..++...|++++|++.|+++++.+.. +...
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a 236 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV 236 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence 66778888888888888888888888888875 456788888888888888888888888888887755 7788
Q ss_pred HHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHH
Q 038914 231 YTSLICGFCY-ANDWNEA-----KHLFIEMMDQGVQPNVVTFTVIMDELCKNG--KMDGASRLLELMILRGVKPDTSTYN 302 (570)
Q Consensus 231 ~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~ 302 (570)
|+.+..++.. .|..++| +..+++.+..... +...|..+..++...| ++++|...+.++ +. .+.+...+.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~ 313 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence 8888888888 5554666 4778887775322 5667777777777777 578888888877 33 244566777
Q ss_pred HHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHh
Q 038914 303 TLIDGYCLTG---------KIDRARELFVSM-ESNGCMHDVVSYSILINGYCK 345 (570)
Q Consensus 303 ~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 345 (570)
.++.+|...| ..++|..+++++ .+.+ +.....|..+...+..
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 7888887763 257888888888 5553 2344556666655543
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=3.2e-16 Score=146.39 Aligned_cols=216 Identities=11% Similarity=0.033 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
|++++|+..|++++... +.+..+|+.+..++...|+ +++|+..|+++...+ +.+...|..+..++...|++
T Consensus 111 g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHccCH
Confidence 46666666666666553 2244556666666666664 666666666666654 33455666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChhHH-----H
Q 038914 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK-NGKMDGA-----S 283 (570)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~ 283 (570)
++|+..|++++..+. -+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++| +
T Consensus 183 ~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 666666666665532 25566666666666666666666666666665322 45566666666666 4443555 3
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------CHHHH
Q 038914 284 RLLELMILRGVKPDTSTYNTLIDGYCLTG--KIDRARELFVSMESNGCMHDVVSYSILINGYCKTK---------DVEEG 352 (570)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A 352 (570)
..+++++... +-+...|..+..++...| ++++|.+.+..+ +. .+.+...+..++.+|.+.| .+++|
T Consensus 261 ~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A 337 (382)
T 2h6f_A 261 QYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337 (382)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 5566655542 224455555555555555 456666666555 22 2334555556666665542 23566
Q ss_pred HHHHHHH
Q 038914 353 LNLYRKM 359 (570)
Q Consensus 353 ~~~~~~~ 359 (570)
+++|+++
T Consensus 338 ~~~~~~l 344 (382)
T 2h6f_A 338 LELCEIL 344 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.5e-16 Score=133.47 Aligned_cols=194 Identities=15% Similarity=0.037 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914 368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG 447 (570)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (570)
...+..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..++++.+.. |.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344444444444444555544444444432 2334444444444555555555555555544443 3344444444445
Q ss_pred HHhc-----------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914 448 LCKH-----------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML 516 (570)
Q Consensus 448 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (570)
+... |++++|...+++..+.. +.+...+..++.++...|++++|+..|+++++.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5544 55555555555555531 2233455555555555555555555555555543 44555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914 517 GFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 567 (570)
++...|++++|+..++++++.. +.+...+..+..++.+.|++++|+..|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555555555555432 2234455555555555555555555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=8.6e-16 Score=132.71 Aligned_cols=200 Identities=15% Similarity=0.025 Sum_probs=137.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228 (570)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 228 (570)
+++...+..+...+.+.|++++|+..|+++.+.+ +.+...+..+..++.+.|++++|+..|++..+.+ +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4566777888888888888888888888888765 5567788888888888888888888888888764 3366
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914 229 VTYTSLICGFCYA-----------NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD 297 (570)
Q Consensus 229 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 297 (570)
..+..+..++... |++++|+..+++.++..+ -+...+..+..++...|++++|+..|+++++.+ .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7788888888887 777777777777776532 245667777777777777777777777777765 56
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKML 360 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (570)
...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6677777777777777777777777776654 3456667777777777777777777776544
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.6e-15 Score=134.14 Aligned_cols=222 Identities=14% Similarity=0.027 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HhhHHHH
Q 038914 266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM--HD----VVSYSIL 339 (570)
Q Consensus 266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 339 (570)
+..+...+...|++++|..+++++.+.. .+...+..+..++...|++++|...++++.+.... ++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444443 33444444444444444444444444444332100 00 3444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914 340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI 419 (570)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 419 (570)
..++...|++++|+..|+++... .|+. ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 55555555555555555555543 1221 12333344444444444444432 22233444444444444555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555444433 3334444444444444444444444444444421 222334444444444444444444444444
Q ss_pred HH
Q 038914 500 EA 501 (570)
Q Consensus 500 ~~ 501 (570)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-15 Score=135.14 Aligned_cols=226 Identities=9% Similarity=0.034 Sum_probs=194.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 038914 298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR--PT----VVTY 371 (570)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 371 (570)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|+..++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788899999999999999999998876 67889999999999999999999999998875211 12 4778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 889999999999999999999998753 342 34667788999999999998765 55677888999999999
Q ss_pred CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 452 GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
|++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998863 4467889999999999999999999999999853 445788999999999999999999999
Q ss_pred HHHHhC
Q 038914 532 HRMDMR 537 (570)
Q Consensus 532 ~~~~~~ 537 (570)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999853
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=7.3e-15 Score=132.35 Aligned_cols=250 Identities=9% Similarity=-0.016 Sum_probs=149.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT--VVTYHTLFLG 377 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 377 (570)
.+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|+..++++...+..++ ..++..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33444555566666666666666665543 22444566666666666666666666666665321111 1235566666
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038914 378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIA 457 (570)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (570)
+...|++++|+..++...+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666543 3345666677777777777777777777766553 44556666666333444577777
Q ss_pred HHHHHhhhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 038914 458 WELFSSLPRVGLMADVVTYNIMIHGLCNDGQ---MDKAHGLFLDMEAKG-LEPN------FVIFNTLMLGFIRNNETSKV 527 (570)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a 527 (570)
...|+++.+.. +.+...+..++.++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777642 2234566667777777776 777777777766531 1122 24566677777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 528 IELLHRMDMRNVMPDASTLSIVVDLLV 554 (570)
Q Consensus 528 ~~~~~~~~~~~~~p~~~~~~~l~~~~~ 554 (570)
...++++.+.. +.+......+.....
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC----
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhc
Confidence 88888887543 233444444444433
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=1.8e-12 Score=129.21 Aligned_cols=429 Identities=11% Similarity=0.061 Sum_probs=225.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCC
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESR 132 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 132 (570)
...+-+..|+..+..+| .+..+|..++..+.+.+.++.+..+|++++.. .| ....|...+..-.+. ++
T Consensus 47 ~~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~-------~~ 115 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDK-------ME 115 (679)
T ss_dssp CCSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC---------
T ss_pred CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhh-------CC
Confidence 46677888999999999 89999999999999999999999999999987 44 445555555554443 46
Q ss_pred ---HHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhCCCCCCccc-CC-ChhhHHH
Q 038914 133 ---IMEAAALFTKLRVFGC-EPDVFTYNTLINGLCRTGHT--------IVALNLFEEMANGNGEIGVVC-KP-DTVTYTT 198 (570)
Q Consensus 133 ---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 198 (570)
++.+..+|++.+.... +|++..|...+....+.++. +...++|+.+...-+ . .+ ....|..
T Consensus 116 ~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~ 190 (679)
T 4e6h_A 116 ELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNE 190 (679)
T ss_dssp CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-----cccccchHHHHH
Confidence 9999999999998631 37888888888766665554 334578888775321 2 23 3567777
Q ss_pred HHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHH
Q 038914 199 IIDGLC---------KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-------------ANDWNEAKHLFIEMMD 256 (570)
Q Consensus 199 l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~ 256 (570)
.+.... ..++++.+..+|++++......-..+|......-.. ..+++.|...+.++..
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~ 270 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLN 270 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 776544 234578899999999864211112333322211111 0122233333333221
Q ss_pred C--CCC---CC--------------------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038914 257 Q--GVQ---PN--------------------VVTFTVIMDELCKNG-------KMDGASRLLELMILRGVKPDTSTYNTL 304 (570)
Q Consensus 257 ~--~~~---~~--------------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l 304 (570)
. ++. |. ...|...+..--..+ ..+.+..+|++++.. .+-....|...
T Consensus 271 ~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~y 349 (679)
T 4e6h_A 271 ITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNM 349 (679)
T ss_dssp HTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred HHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence 0 110 00 011222222111111 012233445555543 23344555555
Q ss_pred HHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC-------
Q 038914 305 IDGYCLTGKIDRAR-ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGI---------RPT------- 367 (570)
Q Consensus 305 ~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------- 367 (570)
+..+...|+.++|. .+|+..... ++.+...|...+....+.|++++|.++|++++.... .|+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 55555555555554 666655543 233444455555555555666666666665554200 011
Q ss_pred -----hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH
Q 038914 368 -----VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-GYIVKAVELFRTLRILKYELNIVSY 441 (570)
Q Consensus 368 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (570)
...|...+....+.|..+.|..+|..+.+........+|...+..-.+. ++.+.|..+|+...+.. +.+...|
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHH
Confidence 1123333444444455555555555554431111122222222222222 23555555555554431 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
...+......|+.+.|..+|+..+.....+ ....|...+..-...|+.+.+.++.+++.+
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445554455555555555555555432111 123444444444455555555555555554
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=2e-14 Score=129.53 Aligned_cols=235 Identities=12% Similarity=0.116 Sum_probs=133.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc--
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV-- 152 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 152 (570)
..+...+..+...|++++|+..|+++++.. |+. ..+..+...+.. .|++++|+..++++......++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYE-------LAKYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHH-------TTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhccCchhHHH
Confidence 345556666666666666666666666652 222 233333333333 24666666666666653211111
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT 232 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (570)
.+|..+..++...|++++|+..|+++.+.+ +.+..++..+..+|...|++++|++.|++..+.. +.+...+.
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 146 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY 146 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence 125666666777777777777777776654 3345666777777777777777777777666652 23555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HhhHH
Q 038914 233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK---MDGASRLLELMILRG-VKPD------TSTYN 302 (570)
Q Consensus 233 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~ 302 (570)
.+...+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++.
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 66623334447777777777766642 2234555556666666666 666666666665431 1122 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914 303 TLIDGYCLTGKIDRARELFVSMESNG 328 (570)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (570)
.+...|...|++++|...++++.+..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55566666666666666666665543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=2.2e-15 Score=136.08 Aligned_cols=251 Identities=11% Similarity=0.000 Sum_probs=179.0
Q ss_pred CcchhhCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914 125 SSLCVESRIMEAAALFTKLRVFGC---EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID 201 (570)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (570)
......|++++|+..|+++.+... +.+..++..++..+...|++++|+..|+++.+.+ +.+..++..++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~ 85 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGI 85 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHH
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHH
Confidence 344556899999999999987632 1235678888889999999999999999998865 456788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (570)
++...|++++|.+.|+++.... +.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence 9999999999999999988863 336788888889999999999999999988875 3444444445555567788888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---HDVVSYSILINGYCKTKDVEEGLNLYRK 358 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (570)
|...+++..... +++... ..++..+...++.++|...++.+...... .+...+..+..++...|++++|...|++
T Consensus 163 A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 163 AKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887777653 233333 34666677777788888888877654211 0145677777788888888888888888
Q ss_pred HHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914 359 MLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF 391 (570)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (570)
+.... |+. +.....++...|++++|+..+
T Consensus 241 al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77652 322 223344555666666666554
No 47
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=8.4e-17 Score=160.22 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=126.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH
Q 038914 400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRI---LKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476 (570)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 476 (570)
.....+|+++|.+|++.|++++|..+|+.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456899999999999999999999988753 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 038914 477 NIMIHGLCNDGQM-DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD------ASTLSIV 549 (570)
Q Consensus 477 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l 549 (570)
++++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+ +.+++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999974 7889999999999999999999988765544 3455666555 3455554 4566667
Q ss_pred HHHHHccCc
Q 038914 550 VDLLVKNEI 558 (570)
Q Consensus 550 ~~~~~~~g~ 558 (570)
.+.+.+.+.
T Consensus 279 ~dl~s~d~~ 287 (1134)
T 3spa_A 279 RDVYAKDGR 287 (1134)
T ss_dssp HHHHCCCSC
T ss_pred HHHHccCCC
Confidence 777766654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=2.3e-15 Score=135.97 Aligned_cols=254 Identities=9% Similarity=-0.037 Sum_probs=167.6
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ 122 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (570)
.+......|++++|+..|+.+++..+. +.+..++..++.++...|++++|+..|++++...+ .+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence 444556778999999999999987431 24567889999999999999999999999998732 234444444444444
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
.|++++|+..|++++... +.+..++..++.++...|++++|+..|+++.+.. |+.......+..
T Consensus 90 -------~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~ 153 (275)
T 1xnf_A 90 -------AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYL 153 (275)
T ss_dssp -------TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred -------ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCChHHHHHHHH
Confidence 458888888888888764 3356778888888888888888888888888754 443344444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCh
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP---NVVTFTVIMDELCKNGKM 279 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 279 (570)
+...|++++|...+++..... +++...+ .++..+...++.++|...+.......... +..++..+..++...|++
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 154 AEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 566688888888887766642 2333333 35666667777777777777765532110 135566666677777777
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038914 280 DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELF 321 (570)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (570)
++|...|+++.... |+. +.....++...|++++|++.+
T Consensus 232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777776542 221 222234455556666655544
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=4.8e-15 Score=131.02 Aligned_cols=199 Identities=14% Similarity=0.116 Sum_probs=134.1
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
..+...|......|++++|+..|+.+++..| .+..++..++.++...|++++|+..|+++.+... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 4455567777889999999999999999888 7788999999999999999999999999987632 233344444444
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI 199 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (570)
+.. .|++++|+..++++.+.. +.+..++..++..+...|++++|+..++++.+.. +.+...+..+
T Consensus 101 ~~~-------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l 165 (243)
T 2q7f_A 101 YVV-------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQF 165 (243)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHH-------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHH
Confidence 433 458888888888877764 3355667777777888888888888888877754 3456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+.++...|++++|++.|+++.... +.+..++..+..++...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777888888888877777653 235667777777777777777777777777664
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=2.1e-13 Score=122.73 Aligned_cols=222 Identities=14% Similarity=0.020 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038914 194 VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVI 269 (570)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 269 (570)
.++..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33344444444444444444444444431 123333344444444 444444444444444432 33334444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914 270 MDELCK----NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILIN 341 (570)
Q Consensus 270 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (570)
...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 444444 444444444444444432 33344444444444 444444444444444432 3333444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914 342 GYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL 413 (570)
Q Consensus 342 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (570)
+|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4444 445555555555444432 23344444444444 555555555555544432 133444444455
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 038914 414 CK----NGYIVKAVELFRTLRILK 433 (570)
Q Consensus 414 ~~----~~~~~~a~~~~~~~~~~~ 433 (570)
.. .+++++|...|++..+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 54 555555555555555543
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=158.18 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038914 368 VVTYHTLFLGLFEVHQVEHALKLFDEMRR---NHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCL 444 (570)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 444 (570)
..+|+.++.+|++.|++++|..+|..|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34667777777777777777777766543 356667777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 445 IDGLCKHGR-LEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 445 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
+.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 777776665 356667777777777777777766665443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=3.3e-13 Score=121.47 Aligned_cols=219 Identities=12% Similarity=-0.037 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914 301 YNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL 376 (570)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (570)
+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 333334444444444444444444432 123333444444444 444444444444444432 3333444444
Q ss_pred HHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914 377 GLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----NGYIVKAVELFRTLRILKYELNIVSYNCLIDGL 448 (570)
Q Consensus 377 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (570)
.+.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 4444 444444444444444432 33444444444444 455555555555554432 333444444444
Q ss_pred Hh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914 449 CK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR 520 (570)
Q Consensus 449 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (570)
.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 44 555555555555555432 33444455555555 555555555555555532 24444445555555
Q ss_pred ----cCCHHHHHHHHHHHHhC
Q 038914 521 ----NNETSKVIELLHRMDMR 537 (570)
Q Consensus 521 ----~g~~~~a~~~~~~~~~~ 537 (570)
.+++++|.+++++..+.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHc
Confidence 55555555555555543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.6e-14 Score=126.31 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL 413 (570)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (570)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344555555566666666666666665532 2244555555666666666666666666655543 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038914 414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAH 493 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 493 (570)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66777777777777666654 4456666666667777777777777777766542 334556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 494 GLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777766642 334566666777777777777777777777653
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.3e-13 Score=122.56 Aligned_cols=194 Identities=13% Similarity=0.031 Sum_probs=123.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS 125 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (570)
|......|++++|+..|+.+++..| .+..++..++.++...|++++|++.|+++..... .+...+..+...+..
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~--- 117 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE--- 117 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH---
Confidence 3334456688888888888887776 6677788888888888888888888888776631 133333333333333
Q ss_pred cchhhCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914 126 SLCVESRIMEAAALFTKLRVFGCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204 (570)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (570)
.|++++|+..++++...+..| +..++..++.++...|++++|+..|+++.+.. +.+...+..++.++.
T Consensus 118 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 118 ----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLY 186 (252)
T ss_dssp ----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHH
T ss_pred ----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHH
Confidence 347777777777766521122 34456666666667777777777777766643 334566666666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777776666542 235555666666666666666666666666654
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.5e-13 Score=122.10 Aligned_cols=200 Identities=11% Similarity=-0.050 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL 413 (570)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (570)
..+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345555555666666666666666655542 2244555556666666666666666666665543 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914 414 CKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (570)
...|++++|..+++++...+. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 677777777777776665111 2244556666667777777777777777766642 23456666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..+++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777664 2335556666666777777777777777777654
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=1.4e-11 Score=122.89 Aligned_cols=444 Identities=12% Similarity=0.033 Sum_probs=298.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC---
Q 038914 91 YDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH--- 167 (570)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 167 (570)
..+.+..|++.+... +-|...|..++..+... +.++.+..+|++++.. ++.....|...+....+.|.
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~-------~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL-------KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcch
Confidence 344555666666664 35788888888887664 4899999999999987 35567789889998888898
Q ss_pred hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHH
Q 038914 168 TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV--------DKAKELFLKMKD-ENI-NP-NAVTYTSLIC 236 (570)
Q Consensus 168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~ 236 (570)
++.+..+|++.+.... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.
T Consensus 119 ~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 119 AAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp HHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 9999999999998631 138888999888876665543 344577877664 354 44 4567777776
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------------cCChhHHHHHHHHHHHC--
Q 038914 237 GFCY---------ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK-------------NGKMDGASRLLELMILR-- 292 (570)
Q Consensus 237 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~-- 292 (570)
.... .++++.+..+|+.++......-..+|......-.. ..+++.|...+.++...
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5432 34577888999998863221112233221111111 11233344444443221
Q ss_pred CCC---------------C-----C---HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 293 GVK---------------P-----D---TSTYNTLIDGYCLTG-------KIDRARELFVSMESNGCMHDVVSYSILING 342 (570)
Q Consensus 293 ~~~---------------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (570)
++. | + ...|...+..--..+ ..+.+..+|++++... +.....|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 111 1 0 123444444332222 1234567788877653 5578888888888
Q ss_pred HHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC---------Cc-----------
Q 038914 343 YCKTKDVEEGL-NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV---------AA----------- 401 (570)
Q Consensus 343 ~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~----------- 401 (570)
+...|+.++|. ++|++.... .+.+...+...+......|+++.|..+|+.+.+... .|
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 88999999997 999999875 333555566777778889999999999998876310 12
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhhhCCCCCChhhHHHH
Q 038914 402 -NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH-GRLEIAWELFSSLPRVGLMADVVTYNIM 479 (570)
Q Consensus 402 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l 479 (570)
...+|...+....+.|..+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. .+.+...|...
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y 510 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKY 510 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHH
Confidence 23467777887788899999999999998751122344454444444444 4589999999999886 34456677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 480 IHGLCNDGQMDKAHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
+......|+.+.|..+|++++.....+ ....|..++..-...|+.+.+.++.+++.+. .|+......+.+-|
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888888999999999999998863222 3467888888888999999999999999965 35544444444443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.6e-14 Score=138.44 Aligned_cols=303 Identities=12% Similarity=0.032 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 038914 226 PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN----VVTFTVIMDELCKNGKMDGASRLLELMILR----GVKP- 296 (570)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~- 296 (570)
.....+......+...|++++|...|+++.+.... + ..++..+...+...|++++|...++++... +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666667777777777777777777665321 2 245666666777777777777777765432 1111
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCC--------------------HHH
Q 038914 297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM-HD----VVSYSILINGYCKTKD--------------------VEE 351 (570)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 351 (570)
...++..+..++...|++++|...++++...... .+ ..++..+..+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1234555566666666666666666655432100 01 2244555555555555 444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 352 GLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
|+..+++.... + .+.+ .+....++..+...+...|++++|...+++..
T Consensus 166 A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444443321 0 0000 01112344455555566666666666666554
Q ss_pred HcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 431 ILKY-ELN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 431 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
+... .++ ..++..+...|...|++++|...+++..+.. ..+ ...++..++.++...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 1245556666666666666666666655321 000 03455566666666677777776666655
Q ss_pred HC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCccc
Q 038914 501 AK----GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR----NVMP-DASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 501 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 560 (570)
+. +..+ ...++..+..++...|++++|...+++..+. +..+ ...++..+..++...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 42 1011 1335556666666677777777766665521 1111 1345555666666665553
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3e-13 Score=117.81 Aligned_cols=205 Identities=9% Similarity=-0.027 Sum_probs=141.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV 152 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (570)
.+...|..++..+...|++++|++.|+++++... .+...+..+...+.. .|++++|...++++.... +.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~-~~~~ 76 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQY-------LKVNDKAQESFRQALSIK-PDSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH-------cCChHHHHHHHHHHHHhC-CCCh
Confidence 5667788888888888888888888888887631 233344444444433 458888888888877663 3355
Q ss_pred chHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 153 FTYNTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 153 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
.++..++..+... |++++|+..++++.+... .+.+...+..++.++...|++++|++.++++.+.. +.+...+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 150 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAF 150 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHH
Confidence 6677777778888 888888888888777210 12335677777778888888888888887777653 2356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+...
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777888888777777776533135556666666677777777777777777654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=143.49 Aligned_cols=277 Identities=12% Similarity=0.031 Sum_probs=183.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCFLQ 122 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (570)
|......|++++|+..|+.+++..|..+. ..++..++.++...|++++|+..|++++..... .+. .....++..
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~ 92 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKASGN 92 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 33445678999999999999999872221 357889999999999999999999998654111 111 111223333
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hhHHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCE-PD----VFTYNTLINGLCRTGH--------------------TIVALNLFEE 177 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 177 (570)
.|..+...|++++|+..+++....... ++ ..++..+...+...|+ +++|+..+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 344455668999999999988764111 11 3478888899999999 9999999888
Q ss_pred HHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038914 178 MANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI-NPN----AVTYTSLICGFCYANDWNEAKHLFI 252 (570)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 252 (570)
........+. .+....++..+..++...|++++|.+.+++...... .++ ..++..+...+...|++++|...++
T Consensus 173 al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 173 NLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7653210000 111245677888888888999999888888765310 011 2367777788888888888888887
Q ss_pred HHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 253 EMMDQGVQ-PN----VVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PD----TSTYNTLIDGYCLTGKIDRARELFV 322 (570)
Q Consensus 253 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (570)
+....... .+ ..++..+...+...|++++|...++++...... .+ ..++..+..++...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77643110 01 345666777777778888877777776643110 01 3355566666777777777777766
Q ss_pred HHHh
Q 038914 323 SMES 326 (570)
Q Consensus 323 ~~~~ 326 (570)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3.7e-13 Score=117.16 Aligned_cols=202 Identities=12% Similarity=0.020 Sum_probs=128.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+..++..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++.... +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 34456666777777777777777777777654 3446667777777777777777777777776653 235666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914 231 YTSLICGFCYA-NDWNEAKHLFIEMMDQGVQP-NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 231 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (570)
+..+...+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 66677777777 77777777777766622222 24556666666777777777777777666542 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
...|++++|...++.+.......+...+..+...+...|+.+.|..+++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66677777776666665543213455555556666666666666666666654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.1e-14 Score=138.02 Aligned_cols=280 Identities=11% Similarity=0.018 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHh
Q 038914 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV----VTFTVIMDELCKNGKMDGASRLLELMILR----G-VKPDTS 299 (570)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 299 (570)
..+..+...+...|++++|+..|+++.+.... +. ..+..+..++...|++++|...+++++.. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33444556666667777777777666664221 22 34555666666666666666666665542 0 011223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCC
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESNG-----CMHDVVSYSILINGYCKTKD----------VEEGLNLYRKMLSKGI 364 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~ 364 (570)
.+..+..++...|++++|...++++.... .+....++..+..+|...|+ +++|...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 44445555555555555555555543320 01112233344444444444 0000000
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-
Q 038914 365 RPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN----H-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN- 437 (570)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~- 437 (570)
+++|+..+++..+. + .......+..+...+...|++++|...+++..+.... .+
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 55555554443321 1 1112345666777778888888888888776643210 11
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC----C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC
Q 038914 438 ---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL----M-ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLE 505 (570)
Q Consensus 438 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 505 (570)
..++..+..+|...|++++|...++++.+... . ....++..++.++...|++++|..+++++... +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 23677788888889999999988887765310 0 11456778888899999999999999887753 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 506 P-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 506 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
+ ...++..+..++...|++++|...+++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1346777888899999999999999998753
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.4e-14 Score=134.93 Aligned_cols=275 Identities=12% Similarity=0.037 Sum_probs=169.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHH
Q 038914 46 GEGDITTITPNDALCVFDYMLNMRPSRPP----VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCF 120 (570)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (570)
|......|++++|+..|+.+++..| .+ ..++..++..+...|++++|++.++++...... .+. .....++
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~ 86 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKAS 86 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---HHHHHHH
Confidence 4444567899999999999999987 44 467889999999999999999999998754111 111 1122233
Q ss_pred HhcCCcchhhCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hhHHHHHH
Q 038914 121 LQNGSSLCVESRIMEAAALFTKLRVFGCE-PD----VFTYNTLINGLCRTGH--------------------TIVALNLF 175 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 175 (570)
...|..+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 33344455678999999999998764211 11 2377888889999999 89999888
Q ss_pred HHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 176 EEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI-----NPNAVTYTSLICGFCYANDWNEAKHL 250 (570)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 250 (570)
++........+. .......+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 167 ~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 167 EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887653100000 111244677788888888888888888887764310 00123566666777777777777777
Q ss_pred HHHHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914 251 FIEMMDQGVQ-PN----VVTFTVIMDELCKNGKMDGASRLLELMILRGVK-----PDTSTYNTLIDGYCLTGKIDRAREL 320 (570)
Q Consensus 251 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 320 (570)
+++....... .+ ..++..+...+...|++++|...++++...... ....++..+..++...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7666542100 01 334455555666666666666666555432100 0012333444444445555555554
Q ss_pred HHHHHh
Q 038914 321 FVSMES 326 (570)
Q Consensus 321 ~~~~~~ 326 (570)
++++.+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1e-12 Score=120.27 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAK-------TKHY-------DTVLSLFKRLNSTGLFPDL-YAYNILINCF 120 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 120 (570)
++|+..|++++...| .++..|..++..+.. .|++ ++|+.+|+++++.- .|+. ..+......+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 789999999999998 899999999988764 4775 78888888887721 3433 3444444444
Q ss_pred HhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914 121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT 198 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
.. .|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++.+.. +.+...|..
T Consensus 110 ~~-------~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~ 173 (308)
T 2ond_A 110 ES-------RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVT 173 (308)
T ss_dssp HH-------TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHH
T ss_pred Hh-------cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHH
Confidence 43 35777888888877765 333 33 67777777777777777777777777654 333444443
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHH
Q 038914 199 IIDGLC-KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-VQP--NVVTFTVIMDELC 274 (570)
Q Consensus 199 l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~ 274 (570)
.+.... ..|++++|.++|++..+.. +.+...|..++..+...|++++|..+|+..+... ..| ....|..++....
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 333322 2577777777777776642 2356667777777777777777777777777642 233 2445666666666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 038914 275 KNGKMDGASRLLELMILR 292 (570)
Q Consensus 275 ~~g~~~~a~~~~~~~~~~ 292 (570)
..|+.+.|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 677777777777776654
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=5.1e-14 Score=135.28 Aligned_cols=280 Identities=15% Similarity=0.084 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCC
Q 038914 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA----VTYTSLICGFCYANDWNEAKHLFIEMMDQ----G-VQPN 262 (570)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 262 (570)
....+..+...+...|++++|++.|+++.+.+.. +. .++..+...|...|++++|+..+++.... + ....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3556677888999999999999999999986432 33 57888999999999999999999988763 1 1223
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 038914 263 VVTFTVIMDELCKNGKMDGASRLLELMILRG-----VKPDTSTYNTLIDGYCLTGK-----------------IDRAREL 320 (570)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 320 (570)
..++..+...+...|++++|...++++.... ......++..+..++...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4677888999999999999999999987641 11223477788889999999 7777777
Q ss_pred HHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 321 FVSMESN----GC-MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 321 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
+++.... +. +....++..+..++...|++++|+..+++..... ++. +
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-------------~------------- 257 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REF-------------G------------- 257 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH-------------T-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hhc-------------C-------------
Confidence 7765432 10 1112344555555556666666666555544320 000 0
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--
Q 038914 396 RNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-----LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG-- 468 (570)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 468 (570)
........+..+..++...|++++|...++++...... ....++..+..+|...|++++|...+++..+..
T Consensus 258 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 --DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00001224556666677777777777777766543200 114567777888888888888888888776521
Q ss_pred --CC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 469 --LM-ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 469 --~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
.. ....++..++.+|...|++++|..+++++.+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01 11346778888999999999999999998874
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=9.7e-14 Score=129.22 Aligned_cols=275 Identities=12% Similarity=0.017 Sum_probs=156.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHhhH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPN----VVTFTVIMDELCKNGKMDGASRLLELMILR----GVK-PDTSTY 301 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 301 (570)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|...++++... +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334445555666666666666666554211 2 234455555566666666666666554432 000 012233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914 302 NTLIDGYCLTGKIDRARELFVSMESNGCM-HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE 380 (570)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (570)
..+...+...|++++|...+++....... .+.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 44444444455555555444443322100 0100 001234444444445
Q ss_pred cCC--------------------HHHHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914 381 VHQ--------------------VEHALKLFDEMRRN----H-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE 435 (570)
Q Consensus 381 ~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (570)
.|+ +++|...++..... + .+....++..+...+...|++++|...++++.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555444321 1 1112345666777778888888888888776543100
Q ss_pred -C----ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914 436 -L----NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK--- 502 (570)
Q Consensus 436 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 502 (570)
+ ...++..+...+...|++++|...+++..+.. ..+ ...++..++.++...|++++|...++++...
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 12367777888888899999988888776521 011 1456777888889999999999998887653
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 503 -GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 503 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
+..+ ...++..+...+...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1346777888899999999999999998753
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1e-12 Score=110.32 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=79.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914 333 VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG 412 (570)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (570)
+.+|..+..+|...|++++|++.|++.++.... +..++..+...+...|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555555555555555555555555443211 33444444445555555555555554444332 2233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914 413 LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (570)
+...++++.|...+.++.... +.+...+..+..++...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3344445555555555555555555555554431 22334455555555555555555
Q ss_pred HHHHHHHHH
Q 038914 493 HGLFLDMEA 501 (570)
Q Consensus 493 ~~~~~~~~~ 501 (570)
+..|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=1.4e-12 Score=123.72 Aligned_cols=299 Identities=9% Similarity=0.000 Sum_probs=141.0
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCh--
Q 038914 203 LCKKGFVDKAKELFLKMKDE--NINPN--AVTYTSLICG--FCYANDWNEAK-----------HLFIEMMDQGVQPNV-- 263 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 263 (570)
+.+.+++++|..+++++.+. ....+ ...|..++.. ....+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45688999999999887653 12223 2333333322 11223333333 444444332100000
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------C
Q 038914 264 --VTFTVIMDELCKNGKMDGASRLLELMILRGV-KP----DTSTYNTLIDGYCLTGKIDRARELFVSMESNGC------M 330 (570)
Q Consensus 264 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~ 330 (570)
..+......+...|++++|...++++.+.-. .+ ...++..+..++...|+++.|...+++..+... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 0111244455666666666666666654310 01 123455555666666666666666655543200 0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 038914 331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTF 409 (570)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 409 (570)
....+++.+..+|...|++++|+..+++..+.... ++. .....++..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l 230 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNI 230 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHH
Confidence 01234445555555555555555555554432000 000 0011234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCChhhHHHHH
Q 038914 410 IDGLCKNGYIVKAVELFRTLRIL----KY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMADVVTYNIMI 480 (570)
Q Consensus 410 ~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 480 (570)
..+|...|++++|...+++..+. +. +....++..+..+|...|++++|...+++..+. +-+.....+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554431 11 222344555555555666666666655555431 0011112244455
Q ss_pred HHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 481 HGLCNDGQ---MDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 481 ~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
..+...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555665 45555554443 12222 2344555666666666666666666655
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.9e-13 Score=131.62 Aligned_cols=215 Identities=10% Similarity=-0.042 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV-EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF 391 (570)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (570)
.++++...++...... +.+...+..+..++...|++ ++|++.|+++++... .+...+..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677777777766553 34777888888899999999 999999999888632 25678888888999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CCH
Q 038914 392 DEMRRNHVAANTYIYTTFIDGLCKN---------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH--------GRL 454 (570)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 454 (570)
+...+.. |+...+..+..++... |++++|+..++++.+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9888764 5567888888888888 88999999999888876 56778888888888888 889
Q ss_pred HHHHHHHHhhhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 455 EIAWELFSSLPRVGLM---ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 455 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
++|...|+++.+.. + .+...|..++.+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888852 2 366788888899999999999999999888752 335667788888888888888888766
Q ss_pred HHH
Q 038914 532 HRM 534 (570)
Q Consensus 532 ~~~ 534 (570)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-12 Score=123.89 Aligned_cols=225 Identities=10% Similarity=-0.040 Sum_probs=139.1
Q ss_pred hhCCHHHHHHHHHHHHhc--CCCCC--cchHHHHHHH--HHhcCChhHHH-----------HHHHHHHhCCCCCCcccCC
Q 038914 129 VESRIMEAAALFTKLRVF--GCEPD--VFTYNTLING--LCRTGHTIVAL-----------NLFEEMANGNGEIGVVCKP 191 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~~~ 191 (570)
+.+++++|..+++++.+. ..+.+ ...|..++.. ....++++.+. +.++.+.... .
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--------~ 95 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--------A 95 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--------H
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--------C
Confidence 457999999999998764 22223 2233333332 12234444444 6666665422 1
Q ss_pred Chhh------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914 192 DTVT------YTTIIDGLCKKGFVDKAKELFLKMKDE----NINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ 260 (570)
Q Consensus 192 ~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (570)
+... +......+...|++++|.+.|++.... +-.+ ...++..+...|...|++++|+..+.+..+....
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1222 223667778889999999999888764 1111 2457778888888888888888888877653111
Q ss_pred -C-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 038914 261 -P-----NVVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PD----TSTYNTLIDGYCLTGKIDRARELFVSMES--- 326 (570)
Q Consensus 261 -~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 326 (570)
+ ...+++.+..+|...|++++|...++++++.... .+ ..++..+..+|...|++++|...+++...
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1 1245667777888888888888888777653110 11 13566667777777777777777777655
Q ss_pred --CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 327 --NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 327 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
...+....++..+..++...|++++|...+++...
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22122345566666777777777777777766654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.7e-11 Score=112.11 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914 315 DRARELFVSMESNGCMHDVVSYSILINGYC-------KTKDV-------EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE 380 (570)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (570)
++|..+|++++... +.+...|..++..+. ..|++ ++|..+|++.+..-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34555555554432 234445555554443 23553 5666666666552011133455555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 038914 381 VHQVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC-KHGRLEIAW 458 (570)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 458 (570)
.|++++|..+|+.+.+.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665532 11222 55566666666666666666666666543 333344433332222 246666666
Q ss_pred HHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 459 ELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG-LEP--NFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
.+|+.+++.. +.+...|..++..+...|++++|..+|++++... +.| ....|..++..+...|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666531 2244556666666666666666666666666642 233 34556666666666666666666666666
Q ss_pred h
Q 038914 536 M 536 (570)
Q Consensus 536 ~ 536 (570)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=3.5e-13 Score=131.00 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=175.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhC
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
.+++|+..++......| .+...+..++.++...|++ ++|++.|+++++. .|+ ...+..+-..+ ...|
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~-------~~~g 151 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVY-------WKKG 151 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-------HHHT
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH-------HHcC
Confidence 36677788887777666 7899999999999999999 9999999999987 454 34444444444 4457
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
++++|+..|+++++. .|+..++..+..++... |++++|+..|+++.+.+ +.+...|..+..+
T Consensus 152 ~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~ 222 (474)
T 4abn_A 152 DVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNA 222 (474)
T ss_dssp CHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 999999999999987 45678888999999999 99999999999999975 4568899999999
Q ss_pred HHhc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038914 203 LCKK--------GFVDKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE 272 (570)
Q Consensus 203 ~~~~--------g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (570)
|... |++++|++.|++....... .+...|..+..+|...|++++|...|++..+... .+...+..+..+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 9998 9999999999999886320 3788899999999999999999999999888643 256677888888
Q ss_pred HHhcCChhHHHHHHHH
Q 038914 273 LCKNGKMDGASRLLEL 288 (570)
Q Consensus 273 ~~~~g~~~~a~~~~~~ 288 (570)
+...|++++|.+.+.+
T Consensus 302 ~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 302 LEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888888775543
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=1.5e-12 Score=123.21 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=179.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914 48 GDITTITPNDALCVFDYMLNMRPSRPPV----TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN 123 (570)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (570)
.....|++++|+..++.++...| ..+. .++..++..+...|++++|.+.++++........ .......++...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 99 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--VWHYALWSLIQQ 99 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 34457899999999999998876 3333 2567788889999999999999999876521111 111122233333
Q ss_pred CCcchhhCCHHHHHHHHHHHHhcC----CC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914 124 GSSLCVESRIMEAAALFTKLRVFG----CE--P-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY 196 (570)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (570)
|..+...|++++|...+++.+... .. | ...++..+..++...|++++|...+++........+. .....++
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 177 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQCL 177 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHHHHHH
Confidence 445566789999999999887641 11 1 2335666888889999999999999999876532221 1124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHH
Q 038914 197 TTIIDGLCKKGFVDKAKELFLKMKDENINPN-AVTYT-----SLICGFCYANDWNEAKHLFIEMMDQGVQPN---VVTFT 267 (570)
Q Consensus 197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 267 (570)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999988765311111 11121 233447788999999988888765432111 12345
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 268 VIMDELCKNGKMDGASRLLELMILR----GVKPDT-STYNTLIDGYCLTGKIDRARELFVSMES 326 (570)
Q Consensus 268 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (570)
.+...+...|++++|...++++... +..++. ..+..+..++...|+.++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677777888888888888776543 111111 2444455666667777777776666554
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=3.3e-12 Score=107.19 Aligned_cols=167 Identities=15% Similarity=0.090 Sum_probs=116.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914 297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL 376 (570)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (570)
+..+|..+..++...|++++|+..|+++++.. +.+..++..+..+|...|++++|+..+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45566667777777777777777777766654 33566677777777777777777777777666422 24555666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038914 377 GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI 456 (570)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (570)
.+...++++.+...+....+.. +.+...+..+..++...|++++|+..|+++.+.. +.+..+|..++.+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777766653 4456667777777778888888888888777765 5567777778888888888888
Q ss_pred HHHHHHhhhhC
Q 038914 457 AWELFSSLPRV 467 (570)
Q Consensus 457 A~~~~~~~~~~ 467 (570)
|...|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888877763
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=6e-13 Score=122.33 Aligned_cols=245 Identities=11% Similarity=0.012 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 038914 263 VVTFTVIMDELCKNGKMDGASRLLELMILR-------GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN------G- 328 (570)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 328 (570)
..++..+...+...|++++|..+++++.+. ........+..+..++...|++++|...++++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555666666666666666666666552 11222344555555666666666666666555432 1
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 038914 329 CMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTT 408 (570)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 408 (570)
.+....++..+..++...|++++|...++++.+.. ........+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHHH
Confidence 11123344455555555555555555555544320 00000001112234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCCh-
Q 038914 409 FIDGLCKNGYIVKAVELFRTLRIL------K-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-------GLMADV- 473 (570)
Q Consensus 409 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~- 473 (570)
+...+...|++++|..+++++... + .+....++..+..+|...|++++|...++++.+. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555556666666655555432 1 0112334555566666666666666666665541 011111
Q ss_pred ------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 474 ------VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 474 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
..+..+...+...+.+.++...++..... .+.+..++..+..+|...|++++|.+++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222222333445556666666665542 122345677777888888888888888887764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=123.04 Aligned_cols=171 Identities=13% Similarity=0.009 Sum_probs=124.1
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCH
Q 038914 44 SSGEGDITTITPNDALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST------GLFPDL 110 (570)
Q Consensus 44 ~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~ 110 (570)
..|......|++++|+..|+.+++. ++ +....++..++.++...|++++|+..|++++.. +..|..
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 110 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 3444445678999999999999874 22 256778999999999999999999999999875 112221
Q ss_pred hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc------CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038914 111 YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF------GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 183 (570)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 183 (570)
...+...|..+...|++++|...++++.+. +..+ ...++..+..++...|++++|+..|+++.....
T Consensus 111 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 111 ------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp ------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 122222233445567999999999998864 2112 345688889999999999999999999987510
Q ss_pred CC-CcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 184 EI-GVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 184 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
.. +...+....++..+..+|...|++++|.+.++++..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 000122356788899999999999999999998875
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=2.2e-11 Score=115.15 Aligned_cols=311 Identities=11% Similarity=0.010 Sum_probs=135.5
Q ss_pred CCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 038914 190 KPDTVTYTTIIDGL--CKKGFVDKAKELFLKMKDE--NINPN--AVTYTSLICG--FCYANDWNEAK---------HLFI 252 (570)
Q Consensus 190 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 252 (570)
.|...+-..|-..| ...+++++|.++++++... ....| ...|-.++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444445555555 6778888888888876542 11122 2233333321 11111111122 3343
Q ss_pred HHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 253 EMMDQGVQPNV----VTFTVIMDELCKNGKMDGASRLLELMILRGV-KPD----TSTYNTLIDGYCLTGKIDRARELFVS 323 (570)
Q Consensus 253 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (570)
.+.....+.+. ..+......+...|++++|...++++.+... .++ ..++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33221100000 0122233445556666666666666654310 011 23445555555666666666655555
Q ss_pred HHhCCC--C----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914 324 MESNGC--M----HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN 397 (570)
Q Consensus 324 ~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (570)
..+... . ....+++.+..+|...|++++|++.+++..+... +.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------------------------------~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM-------------------------------DI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------Hc
Confidence 443100 0 0123444555555555555555555555443100 00
Q ss_pred CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC--
Q 038914 398 HVA-ANTYIYTTFIDGLCKNGYIVKAVELFRTLRI-----LKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL-- 469 (570)
Q Consensus 398 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 469 (570)
+.. ....++..+..+|...|++++|...+++... .. +....++..++.++...|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 000 0122344444445555555555555554443 21 22234444555555555555555555555443210
Q ss_pred -CC-ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 470 -MA-DVVTYNIMIHGLCNDGQ---MDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 470 -~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
.+ ....+..+...+...|+ +.+|+.++++. +..|+ ...+..+...|...|++++|...+++..
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01 11223334444444444 44444444431 11222 2334455555556666666666555554
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=2.5e-11 Score=114.72 Aligned_cols=227 Identities=10% Similarity=0.014 Sum_probs=157.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CC-C-cCHHHHH
Q 038914 339 LINGYCKTKDVEEGLNLYRKMLSKGI-RPT----VVTYHTLFLGLFEVHQVEHALKLFDEMRRN----HV-A-ANTYIYT 407 (570)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~ 407 (570)
....+...|++++|+..|+++..... .++ ..++..+...+...|+++.|...+....+. +. . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666666654310 112 235566666666777777777766665532 10 1 1234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCChhhHHH
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRIL----KYE-LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMADVVTYNI 478 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 478 (570)
.+..+|...|++++|...++++.+. +.+ ....++..++.+|...|++++|...+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888888899999998888877642 111 12356888999999999999999999998761 22334678889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914 479 MIHGLCNDGQMDKAHGLFLDMEAKGL---EPN-FVIFNTLMLGFIRNNE---TSKVIELLHRMDMRNVMPD-ASTLSIVV 550 (570)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 550 (570)
++.++...|++++|..++++..+..- .+. ...+..+...+...|+ +++|+.++++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 99999999999999999999887421 122 3455666667778888 77888887773 33333 45777899
Q ss_pred HHHHccCcccccchhhhh
Q 038914 551 DLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 551 ~~~~~~g~~~~a~~~~~~ 568 (570)
..+...|++++|+..|++
T Consensus 344 ~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 999999999999998875
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=109.62 Aligned_cols=271 Identities=11% Similarity=-0.025 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hhH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV----TFTVIMDELCKNGKMDGASRLLELMILRGV-KPDT----STY 301 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~ 301 (570)
.......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344456667788888888888777653222221 345566667777888888888777665311 1111 224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----Chhh
Q 038914 302 NTLIDGYCLTGKIDRARELFVSMESN----GCM--H-DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----TVVT 370 (570)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~ 370 (570)
..+...+...|++++|...+++.... +.. + ....+..+..++...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 45566677777777777777776542 111 1 22345556667777777777777777766532111 1234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhH
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAA-N-TYIYT----TFIDGLCKNGYIVKAVELFRTLRILKYELN---IVSY 441 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 441 (570)
+..+...+...|++++|...++........+ . ..... ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 4555566666777777777776655321111 1 11111 122335566777777766666554321110 1134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRV----GLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
..+...+...|++++|...++++... +..++. .++..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666667777776666665432 111111 2444555666666666666666666665
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=7.3e-11 Score=102.78 Aligned_cols=206 Identities=12% Similarity=0.003 Sum_probs=160.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914 331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI 410 (570)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (570)
.++..+......+...|++++|+..|++.+.....++...+..+..++...|++++|+..++...+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999987543677788889999999999999999999998865 44677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC---hhhHHHHH
Q 038914 411 DGLCKNGYIVKAVELFRTLRILKYELNI-------VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD---VVTYNIMI 480 (570)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 480 (570)
.++...|++++|...++++.+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998875 4455 45788888899999999999999999985 455 46788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVV 550 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 550 (570)
.++...| ..+++++...+ ..+...+.... ....+.+++|+..+++..+. .|+ ..+...+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 8886554 44556665542 23444444433 34457789999999999975 355 44444443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=2e-11 Score=123.30 Aligned_cols=165 Identities=10% Similarity=0.029 Sum_probs=133.3
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914 367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID 446 (570)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 446 (570)
+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35678888888888888888888888888764 4467788888888888888888888888888776 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETS 525 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 525 (570)
+|...|++++|++.|+++++.. +.+...|+.++.+|...|++++|+..|+++++. .| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888888742 334578888888888888888888888888874 45 4677888888888888888
Q ss_pred HHHHHHHHHHh
Q 038914 526 KVIELLHRMDM 536 (570)
Q Consensus 526 ~a~~~~~~~~~ 536 (570)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=6.3e-11 Score=99.34 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=109.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (570)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555666666666666666655442 3345566666667777777777777777766654 445666677777777
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIE 529 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (570)
..|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776642 3355667777777777777777777777777652 3356677777777777788888877
Q ss_pred HHHHHHh
Q 038914 530 LLHRMDM 536 (570)
Q Consensus 530 ~~~~~~~ 536 (570)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=3.4e-11 Score=121.71 Aligned_cols=166 Identities=15% Similarity=0.054 Sum_probs=121.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID 411 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (570)
+...++.+..+|.+.|++++|++.|++.++... -+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777777777777777777777776522 245667777777777777777777777777654 345667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914 412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK 491 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (570)
++...|++++|++.|+++.+.. +-+...|..+..+|...|++++|+..|+++++.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888888877765 5567778888888888888888888888887742 2245677788888888888888
Q ss_pred HHHHHHHHHH
Q 038914 492 AHGLFLDMEA 501 (570)
Q Consensus 492 A~~~~~~~~~ 501 (570)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.1e-10 Score=101.73 Aligned_cols=206 Identities=13% Similarity=0.030 Sum_probs=158.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914 296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF 375 (570)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (570)
.|...+......+...|++++|...|+++.....+++...+..+..++...|++++|+..+++....... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888899999999999999999999998764367778888999999999999999999999986432 567888999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 038914 376 LGLFEVHQVEHALKLFDEMRRNHVAANT-------YIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL--NIVSYNCLID 446 (570)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 446 (570)
..+...|++++|+..++...+.. +.+. ..+..+...+...|++++|+..|+++.+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998864 3344 457778888999999999999999998764 44 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 038914 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTL 514 (570)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (570)
+|...| ...++++...+ ..+...|.... ....+.+++|+..++++.+. .|+ ..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 886554 34455555532 22333443333 33456789999999999984 454 4444333
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.2e-10 Score=97.67 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444555555555555555555554431 1234445555555555566666666665555442 3344555556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGL 495 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (570)
.|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665553 4455566666666666666666666666666542 33445666666666667777777776
Q ss_pred HHHHHH
Q 038914 496 FLDMEA 501 (570)
Q Consensus 496 ~~~~~~ 501 (570)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=1.9e-11 Score=110.51 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=158.1
Q ss_pred CCCCChhHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHhhHHHH
Q 038914 50 ITTITPNDALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST------GLFPDLYAYNIL 116 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 116 (570)
...|+++.|+..|+++++. ++ +....++..++.++...|++++|+..|++++.. +..|. .
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~ 84 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------V 84 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH------H
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH------H
Confidence 3567888888888888763 22 255778999999999999999999999999865 11121 1
Q ss_pred HHHHHhcCCcchhhCCHHHHHHHHHHHHhc------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Ccc
Q 038914 117 INCFLQNGSSLCVESRIMEAAALFTKLRVF------G-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI-GVV 188 (570)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 188 (570)
..++...|..+...|++++|+..|++++.. . .+....++..+..++...|++++|+..++++.+..... +..
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 223333334455567999999999998865 1 12235678889999999999999999999998751000 000
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHH------HHHHH
Q 038914 189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-------NINP-NAVTYTSLICGFCYANDWNEAKH------LFIEM 254 (570)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~ 254 (570)
.+....++..+..++...|++++|.+.++++... ...+ ....+..+...+...+....+.. .++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 1223568889999999999999999999998763 1122 23344444444444333333222 22211
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 255 MDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292 (570)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 292 (570)
.. ..+....++..+..+|...|++++|..++++.++.
T Consensus 245 ~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 11223457888999999999999999999998764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=2.5e-10 Score=103.36 Aligned_cols=129 Identities=11% Similarity=0.023 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-----
Q 038914 405 IYTTFIDGLCKN-GYIVKAVELFRTLRILKYEL-N----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV----- 473 (570)
Q Consensus 405 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 473 (570)
++..+..+|... |++++|+..|++..+..... + ..++..++..+...|++++|...|+++.+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455556666664 77777777776665432100 1 234666667777777777777777777664211111
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038914 474 -VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV------IFNTLMLGFI--RNNETSKVIELLHRMD 535 (570)
Q Consensus 474 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~ 535 (570)
..|..++.++...|++++|...|++.++ +.|+.. .+..++.++. ..+++++|+..++++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1355666677777777777777777665 233321 2333444443 3456677777766654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=7.3e-11 Score=106.93 Aligned_cols=216 Identities=9% Similarity=-0.011 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI 133 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 133 (570)
++++|...|+.+ +..+...|++++|++.|++++......+ .......++...|..+...|++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCH
Confidence 477777777766 3467788999999999998876521110 1111223344444555566799
Q ss_pred HHHHHHHHHHHhcCCCC-C----cchHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 134 MEAAALFTKLRVFGCEP-D----VFTYNTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 134 ~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
++|+..|++.+...... + ..+++.+..+|... |++++|+..|+++.+..+..+. ......++..+..++...|
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhC
Confidence 99999999887642111 1 34688899999996 9999999999999875310000 0001356788899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH-
Q 038914 208 FVDKAKELFLKMKDENINPNA------VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV------TFTVIMDELC- 274 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~- 274 (570)
++++|++.|++.......... ..|..+..++...|++++|+..|++.... .|+.. .+..++.++.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc
Confidence 999999999998876432221 15677778888889999999988887764 22211 2233444443
Q ss_pred -hcCChhHHHHHHHHHH
Q 038914 275 -KNGKMDGASRLLELMI 290 (570)
Q Consensus 275 -~~g~~~~a~~~~~~~~ 290 (570)
..+++++|+..|+.+.
T Consensus 251 ~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TCTTTHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHhccCC
Confidence 3345666666665543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=6.7e-11 Score=106.84 Aligned_cols=233 Identities=12% Similarity=-0.017 Sum_probs=113.0
Q ss_pred hcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHH
Q 038914 275 KNGKMDGASRLLELMILR-------GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN------G-CMHDVVSYSILI 340 (570)
Q Consensus 275 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 340 (570)
..|++++|+.++++.++. +.+....++..+..++...|++++|...++++... + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345566666655555431 11112334555555555555555555555554432 1 011233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914 341 NGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV 420 (570)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (570)
.+|...|++++|+..++++.... +.......+.....+..+...+...|+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555444320 00000001122345555566666666666
Q ss_pred HHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCC-hhhHHHHHHHHHh
Q 038914 421 KAVELFRTLRIL------K-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-------GLMAD-VVTYNIMIHGLCN 485 (570)
Q Consensus 421 ~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~ 485 (570)
+|...++++... . .+....++..+..+|...|++++|...++++.+. ...+. ...|..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 666666665543 1 1122445666677777777777777777766542 11222 2333334433333
Q ss_pred cCChhHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 486 DGQMDKAHGLFLDMEA---K-G-LEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 486 ~g~~~~A~~~~~~~~~---~-~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
.+....+..+ ..+.. . + ..| ...++..+..+|...|++++|..++++.++
T Consensus 225 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333322222 11111 1 1 112 244667778888888888888888888764
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=7.1e-09 Score=92.74 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=166.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH----HhcCCc
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK--HYDTVLSLFKRLNSTGLFPDL-YAYNILINCF----LQNGSS 126 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~----~~~~~~ 126 (570)
..++|+..++.++..+| .+..+|+.-..++...| .+++++++++.++... |.. ..+..--..+ ...+
T Consensus 48 ~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 48 YSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcc--
Confidence 34699999999999999 88999999999999999 9999999999999874 433 2333322222 2221
Q ss_pred chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914 127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204 (570)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (570)
..+++++++.+++++++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.+ +-|..+|+....++.
T Consensus 122 --~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 122 --NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLF 191 (306)
T ss_dssp --TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 1258899999999999885 347788888888888889888 9999999999876 567888888877777
Q ss_pred hcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHh
Q 038914 205 KKGF------VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNE-AKHLFIEMMDQG--VQPNVVTFTVIMDELCK 275 (570)
Q Consensus 205 ~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 275 (570)
..+. ++++++.+++++..++ -|...|+-+...+...|+..+ +..+..++...+ ...+...+..++.++.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 7776 7888888888877643 377788877777777776433 445555554432 12355667777777777
Q ss_pred cCChhHHHHHHHHHHH
Q 038914 276 NGKMDGASRLLELMIL 291 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~ 291 (570)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7888888888887765
No 90
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=1e-08 Score=99.36 Aligned_cols=206 Identities=10% Similarity=-0.043 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHH-HHHHHH
Q 038914 315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA-LKLFDE 393 (570)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~ 393 (570)
+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.+.. |....+.. .|....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHH
Confidence 45677888877753 456778888888888899999999999999886 44332221 12221111111 111111
Q ss_pred HHhCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhh
Q 038914 394 MRRNH--------VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSL 464 (570)
Q Consensus 394 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 464 (570)
..... ......+|...+....+.++.+.|..+|+++ ... +.+...|...+..-...+ +.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10000 0111245666677777788899999999998 321 234444543333323333 699999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 465 PRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 465 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
.+.. +.+...+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8752 3344556677777788999999999999873 256788888877788899999999898887
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=3.2e-08 Score=95.98 Aligned_cols=379 Identities=11% Similarity=-0.026 Sum_probs=207.4
Q ss_pred CC-ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914 52 TI-TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 130 (570)
.| +++.|+.+|+.++..-|. |+++.+..+|++++.. .|+...|...+....+.+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~------ 61 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS------ 61 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC------
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC------
Confidence 45 477888888888877661 7788888999988886 567777777776665543
Q ss_pred CCHHHHHHHHHHHHhc-CCCC-CcchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914 131 SRIMEAAALFTKLRVF-GCEP-DVFTYNTLINGLC----RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (570)
...+....+|+..+.. |..+ +...|...+..+. ..|+.+.+..+|++++... ...-...|......-
T Consensus 62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P------~~~~~~lw~~Y~~fE- 134 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP------MGSLSELWKDFENFE- 134 (493)
T ss_dssp ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC------CTTHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh------hhhHHHHHHHHHHHH-
Confidence 1235566777776653 3222 4466777666543 2456778888888888731 111112222222211
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CC----
Q 038914 205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN--GK---- 278 (570)
Q Consensus 205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~---- 278 (570)
.......+..++.+.. +.+..|..+++.+...-...+...|...+..-... |-
T Consensus 135 ~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~ 193 (493)
T 2uy1_A 135 LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRP 193 (493)
T ss_dssp HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHH
T ss_pred HHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchh
Confidence 1111222222222211 11222222232222110001122333322221111 00
Q ss_pred -hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 279 -MDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357 (570)
Q Consensus 279 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (570)
.+.+..+|++++... +.+...|...+..+...|+.+.|..++++.... +.+...+... ....+.++. ++
T Consensus 194 ~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~ 263 (493)
T 2uy1_A 194 HESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YG 263 (493)
T ss_dssp HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HH
T ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HH
Confidence 233556666666542 334566666666666777777777777777665 3333222221 111111111 12
Q ss_pred HHHhC---------CCCC---ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHH
Q 038914 358 KMLSK---------GIRP---TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-GYIVKAVE 424 (570)
Q Consensus 358 ~~~~~---------~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~ 424 (570)
.+.+. +..+ ....|...+....+.++.+.|..+|+.. +. ...+..+|...+..-... ++.+.|..
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 21111 0000 1233455555555678899999999988 32 223444554333333333 36999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+|+...+.. +.+...+...++.....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++..
T Consensus 342 ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988753 33455666777777889999999999999842 466788888777788999999998888774
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=6.5e-09 Score=91.82 Aligned_cols=184 Identities=9% Similarity=0.008 Sum_probs=99.7
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914 317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGI-RPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395 (570)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (570)
|+..|+++...+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555443 23344445666666666777777777766655432 1234555666666666777777777776665
Q ss_pred hCCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 396 RNHVAA-----NTYIYTTFIDG--LCKNG--YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 396 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
+. .| +..+...++.+ ....| ++.+|..+|+++... .|+......++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 23444444433 22223 666777777776543 33322222333366667777777777665443
Q ss_pred CC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 038914 467 VG---------LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV 509 (570)
Q Consensus 467 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (570)
.. -+.+..++..++.+....|+ +|.+++.++.+ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 20 02244555455555555565 66666666666 345433
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=1.1e-09 Score=97.59 Aligned_cols=210 Identities=9% Similarity=-0.034 Sum_probs=126.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC--CcCHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV--AANTYIY 406 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 406 (570)
+...+..+...+...|++++|+..|++++..... + ...+..+..++...|++++|+..|+.+.+..+ +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666677777777777777777664211 2 34556666667777777777777777665421 1123445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHH
Q 038914 407 TTFIDGLCK--------NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNI 478 (570)
Q Consensus 407 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 478 (570)
..+..++.. .|++++|...|+++.+.. +.+......+.... .+.. .-...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHH----HHHHHHHH
Confidence 555666666 666777777777666553 22222222211100 0000 00012356
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--
Q 038914 479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIRN----------NETSKVIELLHRMDMRNVMPD-- 542 (570)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~-- 542 (570)
++.+|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|+..++++++. .|+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 778888889999999998888874 333 44667777777765 8889999999988864 244
Q ss_pred --HHHHHHHHHHHHccCcccccchh
Q 038914 543 --ASTLSIVVDLLVKNEISLNSIPQ 565 (570)
Q Consensus 543 --~~~~~~l~~~~~~~g~~~~a~~~ 565 (570)
......+..++.+.|+++++...
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 24555666666677776655543
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=2.1e-10 Score=116.72 Aligned_cols=173 Identities=8% Similarity=-0.112 Sum_probs=125.9
Q ss_pred CCCCChhHHHHHHHHHH--------hcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 038914 50 ITTITPNDALCVFDYML--------NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCF 120 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 120 (570)
...|++++|+..|+.++ +.+| .+..++..++.++...|++++|++.|+++++. .|+. ..+..+-.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 56788889999998888 6666 67788888888888899999999999888876 3433 3333333333
Q ss_pred HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914 121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (570)
...|++++|+..|+++++.. +.+..++..+..++.+.|++++ +..|+++.+.+ +.+...|..+.
T Consensus 478 -------~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg 541 (681)
T 2pzi_A 478 -------LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLA 541 (681)
T ss_dssp -------HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHH
T ss_pred -------HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHH
Confidence 33568888888888888774 2356778888888888888888 88888888765 44577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038914 201 DGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAND 243 (570)
Q Consensus 201 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (570)
.++.+.|++++|++.|+++.+.+. -+...+..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 888888888888888888876532 235666667666655444
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.1e-09 Score=93.37 Aligned_cols=139 Identities=10% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
..+..++...|++++|+..|+++.+.. |.+...+..+..++...|++++|...|+++++.. +.+..++..++.+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347778888899999999998888876 5677888888888889999999999999888853 33567788888887665
Q ss_pred CC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 487 GQ--MDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD 551 (570)
Q Consensus 487 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 551 (570)
|+ .+.+...++.... ..|....+.....++...|++++|+..+++.++ +.|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 53 3445555555432 222233445556667778889999999999885 4577655444443
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.1e-08 Score=90.48 Aligned_cols=247 Identities=9% Similarity=-0.013 Sum_probs=165.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914 271 DELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE 350 (570)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (570)
+-..-.|.+..++.-. .+............+.+++...|+++.. ....|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 3444567777666622 2211111223333445667777766531 1112333344444333 3322
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV-AANTYIYTTFIDGLCKNGYIVKAVELFRTL 429 (570)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 429 (570)
|+..|++..+.+ .++..++..+..++...|++++|++++...+..+. ..+...+...+..+.+.|+.+.|.+.++.+
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887764 44566667888889999999999999999877653 245677888899999999999999999999
Q ss_pred HHcCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 430 RILKYEL-----NIVSYNCLIDGL--CKHG--RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 430 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 876 45 355566666663 3334 899999999999774 4553333444448999999999999999766
Q ss_pred HC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914 501 AK-----GL----EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDA 543 (570)
Q Consensus 501 ~~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 543 (570)
+. .. +.+..++..++......|+ +|.++++++.+. .|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 52 01 3356677677777777787 899999999965 4653
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.7e-09 Score=92.24 Aligned_cols=137 Identities=12% Similarity=-0.003 Sum_probs=102.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038914 373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG 452 (570)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (570)
.+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...|+++.+.. |.+..++..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 37778888999999999998888764 5567888889999999999999999999998876 667888888888876665
Q ss_pred C--HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038914 453 R--LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLM 515 (570)
Q Consensus 453 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (570)
+ .+.+...++.... ..|....+...+.++...|++++|+..|+++++ +.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 4 4455666666543 233334455567777788999999999999988 578866554443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=2.1e-10 Score=91.98 Aligned_cols=145 Identities=11% Similarity=-0.050 Sum_probs=114.0
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhc
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQN 123 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 123 (570)
.|....+.|+++.|+..++.+...+| .+...+..++.+|.+.|++++|++.|+++++. .|+. ..+..+-.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~-- 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYE-- 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--
Confidence 46666778899999999999998877 67788999999999999999999999999988 4544 44444444444
Q ss_pred CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 124 GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
..|++++|+..|++.++.. +.+..++..+..++.+.|++++|... ++++.+.+ |.+..+|......
T Consensus 77 -----~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~l 143 (150)
T 4ga2_A 77 -----LEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQL 143 (150)
T ss_dssp -----HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred -----HcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHH
Confidence 4579999999999999874 33677899999999999999877665 58888865 4567788888777
Q ss_pred HHhcCC
Q 038914 203 LCKKGF 208 (570)
Q Consensus 203 ~~~~g~ 208 (570)
+...|+
T Consensus 144 l~~~G~ 149 (150)
T 4ga2_A 144 LDCEGE 149 (150)
T ss_dssp HHTCCC
T ss_pred HHHhCc
Confidence 777764
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.5e-09 Score=96.62 Aligned_cols=100 Identities=8% Similarity=-0.046 Sum_probs=75.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD---TVTYTTIIDGLCKKGFVDKAKELFLKMKDENI--N 225 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 225 (570)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++..... +
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45566677777888888888888888888764 223 56778888888888888888888888887532 1
Q ss_pred CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 038914 226 PNAVTYTSLICGFCY--------ANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 226 ~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 257 (570)
.....+..+..++.. .|++++|+..|+++++.
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 124566677777777 88888888888888775
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=3.3e-10 Score=90.86 Aligned_cols=146 Identities=10% Similarity=-0.087 Sum_probs=101.1
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
+|..+...|++++|+..+++..... +.+...+..+..+|.+.|++++|++.|+++.+.+ +.+..+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 3455666778888888888876542 2234456677888888888888888888888765 4567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038914 203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHL-FIEMMDQGVQPNVVTFTVIMDELCKNGK 278 (570)
Q Consensus 203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (570)
|...|++++|+..|++..+.+. -+..+|..+...|...|++++|... +++..+..+ -+..+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 8888888888888888877632 3677788888888888887765554 466666432 245566666666665554
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=2.4e-10 Score=94.72 Aligned_cols=156 Identities=15% Similarity=0.044 Sum_probs=121.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
...|++++|+..|+.+++.+| .+..++..++.++.+.|++++|+..|+++.... |+.. +..+...+.. ..
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~-~~~~~~~~~~-----~~ 86 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNS-YKSLIAKLEL-----HQ 86 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHH-HHHHHHHHHH-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChH-HHHHHHHHHH-----Hh
Confidence 457799999999999999998 889999999999999999999999999998774 4333 2222221111 01
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (570)
.+...+|+..+++.++.. +.+..++..+..++...|++++|+..|+++.+.++ ...+...+..++.++...|+.
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSS
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCC
Confidence 123345788999988874 33577888999999999999999999999998752 012356888999999999999
Q ss_pred HHHHHHHHHHHh
Q 038914 210 DKAKELFLKMKD 221 (570)
Q Consensus 210 ~~a~~~~~~~~~ 221 (570)
++|...|++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999987654
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=4.1e-09 Score=82.78 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC 484 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (570)
.+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666777777777777777776654 4456667777777777777888887777777643 334566777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 485 NDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..|++++|..+++++.+.. +.+...+..++..+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888887777642 335667777777788888888888888877643
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=9.1e-08 Score=85.57 Aligned_cols=220 Identities=9% Similarity=0.033 Sum_probs=162.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH----Hh
Q 038914 90 HYDTVLSLFKRLNSTGLFPDLYAY-NILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGL----CR 164 (570)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 164 (570)
..++|++++++++.. .|+..+. +.--..+...+. .++++++..++.++..++ .+..+|+.-..++ ..
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~-----~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPN-----RNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHccc-----ccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 346899999999987 5655443 222222222210 399999999999998753 3667787766666 55
Q ss_pred c---CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 165 T---GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD--KAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 165 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
. +++++++.+++++.+.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.+.. |..+|+.....+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 78999999999999976 667889998888888899888 999999999987654 8888888777777
Q ss_pred hcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHh
Q 038914 240 YAND------WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG-ASRLLELMILRG--VKPDTSTYNTLIDGYCL 310 (570)
Q Consensus 240 ~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 310 (570)
..+. ++++++.++.++...+. |...|+.+...+.+.|+..+ +..+..++...+ -..+...+..++.++.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 7776 88888888888876443 77888888888888777444 445666555432 13355677777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 038914 311 TGKIDRARELFVSMES 326 (570)
Q Consensus 311 ~~~~~~a~~~~~~~~~ 326 (570)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8888888888888775
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=4.9e-09 Score=89.64 Aligned_cols=176 Identities=12% Similarity=-0.043 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC----CHH
Q 038914 135 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG----FVD 210 (570)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 210 (570)
+|++.|++..+.| ++.++..+...+...+++++|+.+|++..+.+ +...+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4566666666643 55667777777777777777777777776643 45666667666666 5 677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCChhH
Q 038914 211 KAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCK----NGKMDG 281 (570)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~ 281 (570)
+|++.|++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776654 55666666666665 66777777777777665421 014566666666666 566777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 038914 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLT-G-----KIDRARELFVSMESNG 328 (570)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 328 (570)
|..+|++..+. ..+...+..+..+|... | +.++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777776654 12333455555555432 2 5666666666666554
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=3e-09 Score=95.86 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=132.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-HHH
Q 038914 400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT-YNI 478 (570)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 478 (570)
+.+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++... .|+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667778888889999999999999998876 667788899999999999999999999998874 455433 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Q 038914 479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVM-PDASTLSIVVDLLVKNE 557 (570)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g 557 (570)
....+...++.++|...++++.... +.+...+..+...+...|++++|+..++++++..-. .+...+..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3344667788888999999988852 446788889999999999999999999999865311 12668889999999999
Q ss_pred cccccchhhhh
Q 038914 558 ISLNSIPQFKR 568 (570)
Q Consensus 558 ~~~~a~~~~~~ 568 (570)
+.++|+..|++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 99999988875
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.6e-09 Score=110.29 Aligned_cols=173 Identities=9% Similarity=-0.030 Sum_probs=99.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 344 CKTKDVEEGLNLYRKML--------SKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 344 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
...|++++|++.++++. +. .+.+...+..+...+...|++++|+..++.+.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 22 12234455556666666666666666666666543 3345566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914 416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGL 495 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (570)
.|++++|...|+++.+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554 4455566666666666666666 66666666532 22345566666666666666666666
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038914 496 FLDMEAKGLEPN-FVIFNTLMLGFIRNNE 523 (570)
Q Consensus 496 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 523 (570)
|+++.+ +.|+ ...+..+..++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 666655 3343 3445555555555444
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=3.1e-09 Score=95.72 Aligned_cols=158 Identities=13% Similarity=0.004 Sum_probs=117.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914 48 GDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL 127 (570)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (570)
.....|++++|+..|+.+++.+| .+..++..++.++.+.|++++|+..++++... .|+.......... .+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~------~l 195 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI------EL 195 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH------HH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH------HH
Confidence 34457789999999999998888 77888889999999999999999999988776 4544332222221 12
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
...++.++|+..|++.+... +.+..++..+..++...|++++|+..|+++.+.++. ..+...+..++.++...|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHHHHC
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHHHcC
Confidence 23457778888888888774 336677888888888999999999999998886521 122667888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 038914 208 FVDKAKELFLKMKD 221 (570)
Q Consensus 208 ~~~~a~~~~~~~~~ 221 (570)
+.++|...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888876543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=2.1e-09 Score=89.02 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=106.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH-HH
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG-LC 484 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 484 (570)
+......+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 4455566777788888888888776654 556677777888888888888888888887764 3343333222222 12
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCccccc
Q 038914 485 NDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP-DASTLSIVVDLLVKNEISLNS 562 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 562 (570)
..+...+|+..++++++. .| +...+..+..++...|++++|...++++++..-.+ +...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334567777777774 34 46777778888888888888888888887543221 245777788888888888888
Q ss_pred chhhhh
Q 038914 563 IPQFKR 568 (570)
Q Consensus 563 ~~~~~~ 568 (570)
+..|++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=1.2e-08 Score=87.21 Aligned_cols=176 Identities=15% Similarity=0.050 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHH
Q 038914 170 VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAN----DWN 245 (570)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 245 (570)
+|++.|++..+.+ +..++..|...|...+++++|++.|++..+.| +...+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4566666666543 56677777777777777777777777777654 55666666666665 5 677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCCHHH
Q 038914 246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCK----NGKMDGASRLLELMILRGVK-PDTSTYNTLIDGYCL----TGKIDR 316 (570)
Q Consensus 246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 316 (570)
+|+.+|++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .+...+..|..+|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776643 45556666666665 66677777777776655321 014555666666666 566677
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 038914 317 ARELFVSMESNGCMHDVVSYSILINGYCKT-K-----DVEEGLNLYRKMLSKG 363 (570)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 363 (570)
|..+|++..+. +.+...+..+..+|... | ++++|+..|++..+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777666654 12334455555555432 2 5666666666666554
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=7.5e-09 Score=81.20 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=82.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK 450 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (570)
+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3445555556666666666666655543 3345555666666666777777777777766554 4455666667777777
Q ss_pred cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.|++++|...++++.+.. +.+..++..++.++...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777776642 33455666677777777777777777777665
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=6.3e-10 Score=101.54 Aligned_cols=135 Identities=10% Similarity=-0.071 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP-----NA 228 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~ 228 (570)
+++.+..+|...|++++|+..|+++.......|. ...-..++..+..+|.. |++++|++.|++........ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 4555555555666666666666655443211110 01124555666666655 66666666665554321100 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQG----VQPN-VVTFTVIMDELCKNGKMDGASRLLELMI 290 (570)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 290 (570)
.++..+...|...|++++|+..|++..... ..+. ...+..++.++...|++++|...|++.+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455566666666666666666666655421 1111 1244455555666667777776666666
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=3.1e-09 Score=106.28 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=113.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhh
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVE 130 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 130 (570)
.|++++|+..|+++++.+| .+..+|..++..+...|++++|++.|+++++. .|+ ...+..+-..+. ..
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~-------~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRW-------TQ 70 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHH-------HT
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-------HC
Confidence 4789999999999999988 78899999999999999999999999999987 444 334444444444 45
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc---C
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK---G 207 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g 207 (570)
|++++|...|++.++.. +.+..++..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++... |
T Consensus 71 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccc
Confidence 69999999999999874 3356789999999999999999999999999875 45678899999999999 9
Q ss_pred CHHHHHHHHHHHHhCC
Q 038914 208 FVDKAKELFLKMKDEN 223 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~~ 223 (570)
+.++|.+.+++..+.+
T Consensus 143 ~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999998864
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=2.4e-08 Score=86.42 Aligned_cols=198 Identities=9% Similarity=-0.005 Sum_probs=111.2
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHHHH
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA----YNILINC 119 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~ 119 (570)
.|...+..|++++|+..|+.+++..|..+. ..++..++.++.+.|++++|+..|+++++. .|+... +..+-.+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence 344456677777777777777777663222 356777777777777777777777777766 333321 1111111
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI 199 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (570)
+... +. . ....+..+...+...|++++|+..|+++.+.. +.+...+...
T Consensus 88 ~~~~-------~~-----~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~ 136 (225)
T 2yhc_A 88 NMAL-------DD-----S------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDAT 136 (225)
T ss_dssp HHHH-------HC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHH
T ss_pred HHhh-------hh-----h------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHH
Confidence 1110 00 0 01112233344456789999999999999875 2223333221
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcC
Q 038914 200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNG 277 (570)
Q Consensus 200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 277 (570)
.... .+...+ ......+...|...|++++|+..|+.+++..+... ...+..+..++.+.|
T Consensus 137 ~~l~----------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 137 KRLV----------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HHHH----------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence 1110 001111 11123456778888888888888888887532211 245777888888888
Q ss_pred ChhHHHHHHHHHHHCC
Q 038914 278 KMDGASRLLELMILRG 293 (570)
Q Consensus 278 ~~~~a~~~~~~~~~~~ 293 (570)
++++|.+.++.+...+
T Consensus 199 ~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHhhC
Confidence 8888888888887763
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=2.9e-08 Score=85.82 Aligned_cols=186 Identities=8% Similarity=-0.036 Sum_probs=112.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCH--HHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR-PT-VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANT--YIYT 407 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 407 (570)
+...+..+...+...|++++|+..|++++..... +. ...+..+..++...|++++|+..|+.+.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788888888888888888875222 11 246677778888888888888888888765422111 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hh-----------
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VT----------- 475 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----------- 475 (570)
.+..++...+.. .+ ..+..+...+...|++++|...|+++++. .|+. ..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444444432100 00 00111111222234444444444444442 1221 11
Q ss_pred ------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914 476 ------YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIRNNETSKVIELLHRMDMRN 538 (570)
Q Consensus 476 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (570)
...++..+...|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 134667788899999999999999885 344 2467788889999999999999999888653
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.04 E-value=3e-09 Score=92.68 Aligned_cols=191 Identities=7% Similarity=-0.061 Sum_probs=119.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCHhh--------H--
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNIL-------FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA--------Y-- 113 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~-- 113 (570)
..++++.|+..|.++.+.+| ....+|..+ +.++.+.++..+++..+.+.+.. .|+... |
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 36899999999999999999 889999999 78888888888888888887764 232110 0
Q ss_pred --------HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038914 114 --------NILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI 185 (570)
Q Consensus 114 --------~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 185 (570)
..+--.|+ ..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 94 ~~~~v~~r~dl~LayA---~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--- 165 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFA---ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--- 165 (282)
T ss_dssp CEEECSSHHHHHHHHH---HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---
T ss_pred cccccCCHhHHHHHHH---HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---
Confidence 01111111 11333467777777777666543 222244455556667777777777776443321
Q ss_pred CcccCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 186 GVVCKPD--TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN--AVTYTSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 186 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
.|. ...+..+..++...|++++|++.|++.......|. .........++...|+.++|..+|+++...
T Consensus 166 ----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 ----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 23566666677777777777777776664322132 234555566666677777777777776664
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1.5e-09 Score=99.12 Aligned_cols=206 Identities=12% Similarity=-0.037 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD 210 (570)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (570)
+++++|...|.++ +..|...|++++|...|.++.......+. ...-..+|..+..+|...|+++
T Consensus 30 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 30 PDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp CCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHH
Confidence 4566666665543 23455566666666666655543211110 1223678888899999999999
Q ss_pred HHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCChh
Q 038914 211 KAKELFLKMKDE----NIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP-----NVVTFTVIMDELCKNGKMD 280 (570)
Q Consensus 211 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 280 (570)
+|+..|++.... |-. ....++..+..+|.. |++++|+..|++.+...... ...++..+..++...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999987643 211 124678888999988 99999999999887642111 1467888999999999999
Q ss_pred HHHHHHHHHHHCC----CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HhhHHHHHHHHHhcCCHHH
Q 038914 281 GASRLLELMILRG----VKPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMH-D---VVSYSILINGYCKTKDVEE 351 (570)
Q Consensus 281 ~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~ 351 (570)
+|+..|++.+... ..+. ...+..++.++...|++++|...|++.. ..... + ......++..+ ..++.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 9999999988641 1111 2356677788888999999999999988 53211 1 12344455555 5778776
Q ss_pred HHHH
Q 038914 352 GLNL 355 (570)
Q Consensus 352 A~~~ 355 (570)
+..+
T Consensus 251 ~~~~ 254 (307)
T 2ifu_A 251 LLRV 254 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6663
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=4.2e-07 Score=82.08 Aligned_cols=173 Identities=11% Similarity=0.001 Sum_probs=133.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC-
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES- 131 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 131 (570)
..++|+..++.++..+| .+..+|+.-..++...| .+++++++++.++...+. +...+..-...+.... +
T Consensus 69 ~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~------~~ 139 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRIS------PQ 139 (349)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHC------CS
T ss_pred CCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhc------CC
Confidence 45689999999999999 88999999999999999 599999999999988422 3334444433333321 3
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--------VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL 203 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (570)
++++++.+++++++.. +.+..+|+...-++.+.|.++ ++++.++++.+.+ +-|..+|+....++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLR 211 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 6789999999999875 337778887777776667676 9999999999976 56788999888888
Q ss_pred HhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038914 204 CKKGF-------VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW 244 (570)
Q Consensus 204 ~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (570)
.+.++ ++++++.++++..... -|...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 88876 6788888888887643 3777887766666665543
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.4e-08 Score=101.65 Aligned_cols=153 Identities=10% Similarity=-0.062 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL 425 (570)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 425 (570)
.|++++|++.++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677778888877776522 245667777777777888888888887777654 44566777777777778888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND---GQMDKAHGLFLDMEAK 502 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 502 (570)
++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88777765 4566777777777778888888888887777642 33456677777777777 7777888877777764
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=7.5e-08 Score=87.14 Aligned_cols=176 Identities=10% Similarity=-0.052 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc-----c
Q 038914 79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV-----F 153 (570)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~ 153 (570)
...+..+...|++++|..+++++.... +........+..+...|..+...|++++|+..|++++......+. .
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344677889999999999999999853 322222222222222333445567999999999999985322222 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINPN-A 228 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~ 228 (570)
+++.++.+|...|++++|+..|+++.+.........+....++..++.+|.+.|++++|++.+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 688999999999999999999999984210000001222447788888999999999999988877643 11112 5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 038914 229 VTYTSLICGFCYAN-DWNEAKHLFIEMMD 256 (570)
Q Consensus 229 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 256 (570)
.+|..+..++...| .+++|...+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67777778888888 45788877777654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.4e-07 Score=80.82 Aligned_cols=125 Identities=9% Similarity=-0.086 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914 371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK 450 (570)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (570)
+..+...+...|++++|+..++... .++...+..+..++...|++++|...++++.... +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666666666666666552 3455666666666666666666666666666554 4455566666666666
Q ss_pred cCCHHHHHHHHHhhhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 451 HGRLEIAWELFSSLPRVGLMADV----------------VTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.|++++|...|+++.+.. +.+. ..+..++.++...|++++|...|+++.+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666532 1111 4555566666666666666666666665
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.87 E-value=3.7e-09 Score=81.82 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=89.1
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
..+...|....+.|++++|+..|+++++.+| .+..+|..++.++...|++++|++.|+++++..+. +...+..+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHH
Confidence 4455677778889999999999999999998 78999999999999999999999999999876311 22234445566
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN 156 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (570)
+.+.|..+...|++++|+..|++.+.. .|+..+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777888999999999998875 45554443
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=3.1e-08 Score=89.68 Aligned_cols=177 Identities=10% Similarity=-0.015 Sum_probs=123.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC-C
Q 038914 73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP-D 151 (570)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 151 (570)
.....+...+..+...|++++|++.+++.+..... .......+..+...|..+...|++++|+..+++........ +
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 33455667788899999999999999999887432 22112222222333344556689999999999988642211 1
Q ss_pred ----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 152 ----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-----TVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 152 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
..+++.++..|...|++++|+..|+++.+... ..++ ..++..++.+|...|++++|++.+++....
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-----~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-----ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34788899999999999999999999883210 0111 257888889999999999999999887653
Q ss_pred C----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038914 223 N----INP-NAVTYTSLICGFCYANDWNEA-KHLFIEMMD 256 (570)
Q Consensus 223 ~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 256 (570)
. ... -..+|..+..+|...|++++| ...+++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 111 155677777888888888888 666666543
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=8.7e-09 Score=87.62 Aligned_cols=167 Identities=12% Similarity=-0.012 Sum_probs=111.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV 129 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (570)
+..|++++|...++.+.. +| .....++..++..+...|++++|+..+++++......+. ......++...|..+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHH
Confidence 457899999997666644 44 356788999999999999999999999999873111110 11122333334445566
Q ss_pred hCCHHHHHHHHHHHHhc----CCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914 130 ESRIMEAAALFTKLRVF----GCE--PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL 203 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (570)
.|++++|...+++.... +.. ....++..+..++...|++++|+..+++........+. ......++..+..++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHH
Confidence 78999999999987764 101 12345777888899999999999999988753210000 011133457778888
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 038914 204 CKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 204 ~~~g~~~~a~~~~~~~~~ 221 (570)
...|++++|.+.+++...
T Consensus 158 ~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 888888888888877664
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=3.4e-08 Score=81.78 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=99.6
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhc
Q 038914 45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC-FLQN 123 (570)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 123 (570)
.+..+...|++++|+..|+.+++.+| .+..+|..++.++...|++++|+..|++++.... .+...+..+... +..
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~- 91 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQ- 91 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHH-
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh-
Confidence 34556788999999999999999998 7889999999999999999999999999998732 233333333333 333
Q ss_pred CCcchhhCCH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 124 GSSLCVESRI--MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 124 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
.|++ ++|+..+++++... +.+..++..+..++...|++++|+..|+++.+..
T Consensus 92 ------~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ------ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp ------TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ------cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 4688 99999999999874 3356788889999999999999999999999865
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=9.6e-08 Score=73.58 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (570)
.+...+..|.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..++++++.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34445555555666666666666555532 2234555555566666666666666666655531 223455555556666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 038914 520 RNNETSKVIELLHRMDM 536 (570)
Q Consensus 520 ~~g~~~~a~~~~~~~~~ 536 (570)
..|++++|++.+++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=9.1e-07 Score=79.94 Aligned_cols=162 Identities=7% Similarity=-0.029 Sum_probs=114.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 038914 374 LFLGLFEVHQVEHALKLFDEMRRNHV-AANT----YIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN----IVSYNC 443 (570)
Q Consensus 374 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 443 (570)
.+..+...|++++|..+++...+... .++. ..+..+...+...+++++|+..++++...... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677888888888877765321 1221 12334555666777889999988888774322 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhh----C-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 038914 444 LIDGLCKHGRLEIAWELFSSLPR----V-GLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN-FVIFN 512 (570)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 512 (570)
++.+|...|++++|...|+++.+ . +..+. ..++..++.+|...|++++|+.+++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999988874 1 11222 247888999999999999999999887752 22222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 038914 513 TLMLGFIRNN-ETSKVIELLHRMD 535 (570)
Q Consensus 513 ~l~~~~~~~g-~~~~a~~~~~~~~ 535 (570)
.+..++.+.| ++++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8889999999 4699999998886
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=3.1e-08 Score=78.75 Aligned_cols=109 Identities=11% Similarity=-0.031 Sum_probs=87.9
Q ss_pred HHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHH
Q 038914 62 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALF 140 (570)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~ 140 (570)
++.++..+| .+..++..++..+.+.|++++|+..|++++.. .|+. ..+..+-.++.. .|++++|+..|
T Consensus 25 l~~al~l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~-------~g~~~~Ai~~~ 93 (151)
T 3gyz_A 25 LKDINAIPD--DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQI-------KEQFQQAADLY 93 (151)
T ss_dssp TGGGCCSCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred HHHHhCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-------HccHHHHHHHH
Confidence 445556666 77889999999999999999999999999987 4543 444444444444 46999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 141 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
++++... +.+..+|..+..+|.+.|++++|+..|+++.+..
T Consensus 94 ~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 94 AVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999875 3367889999999999999999999999999854
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=9.2e-08 Score=73.69 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
..+......|.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..++++++.. +.+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456667777888888888888888887776 5677888888888888888888888888888753 33557788888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 038914 484 CNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLM 515 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 515 (570)
...|++++|++.|+++++. .|+ ...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 8888888888888888874 453 44444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=6.9e-08 Score=76.75 Aligned_cols=96 Identities=17% Similarity=0.014 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
..+..+...+.+.|++++|...|+++.... |.+...|..+..+|...|++++|...|+++.+.. +.+...|..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 345555556666666666666666666554 4455666666666666666666666666666532 22345566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 038914 484 CNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~ 501 (570)
...|++++|...|+++++
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666666
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=1.8e-07 Score=80.05 Aligned_cols=125 Identities=11% Similarity=-0.086 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (570)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|+..++...+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555666666666665543 3355555556666666666666666666555543 3344555555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 416 NGYIVKAVELFRTLRILKYELNI----------------VSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
.|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666655543 2222 4455555566666666666666666555
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=3.8e-06 Score=75.88 Aligned_cols=175 Identities=9% Similarity=-0.037 Sum_probs=125.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914 163 CRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-FVDKAKELFLKMKDENINPNAVTYTSLICGFCYA 241 (570)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (570)
.+.+..++|+++++.++..+ +.+..+|+.-..++...| .+++++++++.+...+.+ +..+|+.-..++...
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33455678999999998876 455777888888888888 589999999998887544 778888777777666
Q ss_pred -C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038914 242 -N-DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMD--------GASRLLELMILRGVKPDTSTYNTLIDGYCLT 311 (570)
Q Consensus 242 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (570)
+ ++++++.+++.+.+.... |..+|+...-++...|.++ ++++.++++++.+ +-|...|+.....+...
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 788888999888876433 6677776666666666665 7888888888764 33666777766666666
Q ss_pred CC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914 312 GK-------IDRARELFVSMESNGCMHDVVSYSILINGYCKTKD 348 (570)
Q Consensus 312 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (570)
+. ++++++.+++++... +.|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 65 567777777776654 4466677666666555554
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=7.6e-09 Score=95.44 Aligned_cols=157 Identities=11% Similarity=-0.065 Sum_probs=111.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHh
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---------AYNILINCFLQ 122 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 122 (570)
.+++++|+..|+.+...+| .+...+..++..+.+.|++++|+..|++++... |+.. .-.....++..
T Consensus 126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHH
Confidence 4566778877877776666 677889999999999999999999999999874 4321 00111122223
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
.|..+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
Confidence 3333444568888888888887764 3356677778888888888888888888888764 4456677777888
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 038914 203 LCKKGFVDKA-KELFLKMK 220 (570)
Q Consensus 203 ~~~~g~~~~a-~~~~~~~~ 220 (570)
+...|+.++| ...|..|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887777 34555554
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=2.2e-07 Score=75.83 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
..+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777788888888888888887765 5567788888888888899999998888888753 34567788888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 038914 484 CNDGQMDKAHGLFLDMEAKGLEPNFVIFNTL--MLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 535 (570)
...|++++|...++++.+.. +.+...+..+ +..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999998888752 2344555333 334677888888888888764
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=4.3e-07 Score=82.12 Aligned_cols=164 Identities=7% Similarity=-0.049 Sum_probs=106.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--hhhH
Q 038914 372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAAN-----TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE---LN--IVSY 441 (570)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~ 441 (570)
...+..+...|++++|...+....+...... ...+..+...+...|++++|...++++...... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344555666666666666665554321111 012233455566777888888888877643211 11 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhC-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHH
Q 038914 442 NCLIDGLCKHGRLEIAWELFSSLPRV-GLMAD-----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG----LEP-NFVI 510 (570)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~ 510 (570)
+.++..|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+.++++.++.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 78888888888888888888887631 01122 2577888888888999999998888876531 111 1567
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 038914 511 FNTLMLGFIRNNETSKV-IELLHRMD 535 (570)
Q Consensus 511 ~~~l~~~~~~~g~~~~a-~~~~~~~~ 535 (570)
|..+..++...|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 78888888889999888 77777765
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=6.4e-08 Score=77.09 Aligned_cols=111 Identities=11% Similarity=-0.064 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHHH
Q 038914 60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAAA 138 (570)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~ 138 (570)
..|+.++..+| .+...+..++..+.+.|++++|+..|++++.. .| +...+..+-.++.. .|++++|+.
T Consensus 8 ~~~~~al~~~p--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~-------~g~~~~A~~ 76 (148)
T 2vgx_A 8 GTIAMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQA-------MGQYDLAIH 76 (148)
T ss_dssp CSHHHHTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred hhHHHHHcCCH--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHH-------HhhHHHHHH
Confidence 45777888877 77888999999999999999999999999987 44 34444444444444 469999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
.|++++... +.+..++..+..++...|++++|+..|+++.+..
T Consensus 77 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 77 SYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999998874 3367788889999999999999999999998854
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=5.8e-08 Score=87.02 Aligned_cols=98 Identities=12% Similarity=-0.089 Sum_probs=68.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
...+..+...+.+.|++++|+..|+++.... +.+...|..+..+|.+.|++++|++.+++..+.. +.+...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456666677777777777777777777654 3456677777777777777777777777777653 2356667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 232 TSLICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 232 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
..+..++...|++++|+..|++..+.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777776653
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.3e-07 Score=80.83 Aligned_cols=195 Identities=10% Similarity=-0.056 Sum_probs=141.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCC--------CC----cc--
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTL-------INGLCRTGHTIVALNLFEEMANGNGE--------IG----VV-- 188 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~----~~-- 188 (570)
.++..+|.+.|.++.... +-....|..+ ..++...++..+++..++......+. .| +.
T Consensus 19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 469999999999999874 3356788888 57777777777887777776663210 00 00
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhH
Q 038914 189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTF 266 (570)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 266 (570)
+..-......+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 00112345567788999999999999999888754 333366667778899999999999998665431 111 2367
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914 267 TVIMDELCKNGKMDGASRLLELMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNG 328 (570)
Q Consensus 267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (570)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7788899999999999999999885433243 3355667778889999999999999998874
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=1.3e-07 Score=80.16 Aligned_cols=155 Identities=10% Similarity=-0.083 Sum_probs=91.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 038914 380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL----KY-ELNIVSYNCLIDGLCKHGRL 454 (570)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 454 (570)
..|++++|.++++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433332 12234455666666666777777777777665541 10 11234566667777777777
Q ss_pred HHHHHHHHhhhhC----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 038914 455 EIAWELFSSLPRV----GLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPN----FVIFNTLMLGFIRNNE 523 (570)
Q Consensus 455 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~ 523 (570)
++|...+++..+. +..+ ....+..++.++...|++++|...+++.....- ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766542 1011 124466677777777888888887777654200 111 2234666777778888
Q ss_pred HHHHHHHHHHHH
Q 038914 524 TSKVIELLHRMD 535 (570)
Q Consensus 524 ~~~a~~~~~~~~ 535 (570)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887776
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=5.2e-07 Score=69.28 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
..+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555556666666666666555532 2234455556666666666666666666665531 23455555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV 554 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 554 (570)
...|++++|...++++.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66666666666666665432 223444444444443
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=5.5e-07 Score=73.36 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (570)
.+..+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...++++.... +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555666666666666666665543 3355666667777777777777777777776664 455667777777777
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCChhhHHH--HHHHHHhcCChhHHHHHHHHHH
Q 038914 450 KHGRLEIAWELFSSLPRVGLMADVVTYNI--MIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|+..+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777642 223344433 3333666777777777776654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=9.6e-08 Score=76.06 Aligned_cols=96 Identities=14% Similarity=-0.036 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG 517 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (570)
...+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|+..|++++... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344445555555555555555555555432 2234455555555555555555555555555431 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038914 518 FIRNNETSKVIELLHRMD 535 (570)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~ 535 (570)
+...|++++|...+++.+
T Consensus 99 ~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555555
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=4.9e-07 Score=70.13 Aligned_cols=118 Identities=9% Similarity=-0.038 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555555555555555555431 2234455555555555666666666665555531 22344555555556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcc
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEIS 559 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 559 (570)
...|++++|...+++..+.+ +.+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 66666666666666655432 22344555555555555443
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=1.4e-07 Score=78.04 Aligned_cols=124 Identities=7% Similarity=0.026 Sum_probs=94.4
Q ss_pred cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH-HH
Q 038914 126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG-LC 204 (570)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 204 (570)
.+...|++++|+..+++.+... +.+..++..+..++...|++++|+..|+++.+.+ +.+...+..+..+ +.
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYY 90 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 3455678888988888887764 3356778888888888999999999999988764 4467778888888 77
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038914 205 KKGFV--DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG 258 (570)
Q Consensus 205 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 258 (570)
..|++ ++|+..|+++...+ +.+...+..+..++...|++++|...++.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888 89999998888763 3367778888888888899999999888888753
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=8.4e-07 Score=68.07 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG 482 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (570)
...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666777777788888888887777654 4566677777777888888888888888777642 3355677777888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914 483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR 520 (570)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (570)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 888888888888888877642 2345555555555443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=3.5e-07 Score=70.98 Aligned_cols=120 Identities=15% Similarity=0.003 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34456666677777788888888888777654 4566777777778888888888888888777642 334567777778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038914 482 GLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNET 524 (570)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (570)
++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888877742 23566666676777666653
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2.9e-07 Score=71.78 Aligned_cols=117 Identities=5% Similarity=-0.082 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG 517 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (570)
...+..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4445555556666666666666666655532 2244555566666666666666666666665531 2245555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914 518 FIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 557 (570)
+...|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 666666666666666665432 122344445555544433
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=3.3e-07 Score=70.70 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
.+...+.+.|++++|+..|+++++.. |.+...|..+..+|...|++++|+..+++.++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444443 33344444444444444444444444444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=3.9e-07 Score=71.03 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666667777777777777777776554 4456667777777777777777777777776642 334566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 038914 482 GLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNN 522 (570)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 522 (570)
++...|++++|...++++.+. .| +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777777777777777663 23 3445555555555444
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=1.6e-07 Score=84.22 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING 342 (570)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (570)
...+..+...+...|++++|...|++++... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666665542 2245555566666666666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 038914 343 YCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~ 361 (570)
+...|++++|+..|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666555
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=1.4e-05 Score=71.87 Aligned_cols=189 Identities=9% Similarity=-0.029 Sum_probs=135.1
Q ss_pred CCCh-hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914 52 TITP-NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYAYNILINCF 120 (570)
Q Consensus 52 ~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (570)
.|.+ ++|+..++.++..+| .+..+|+.-..++...+. +++++.+++.++...+ -+...+..-...+
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3455 489999999999999 888999987777766554 6899999999998742 2445555554455
Q ss_pred HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914 121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEIGVVCKPDTVTYTTI 199 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (570)
...+ ...+++++.+++++.+.. +.|..+|+.-.-++...|. ++++++.++++.+.+ +.|..+|+..
T Consensus 119 ~~l~-----~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~N~SAW~~R 185 (331)
T 3dss_A 119 SRLP-----EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYR 185 (331)
T ss_dssp HHCS-----SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SCCHHHHHHH
T ss_pred hccC-----cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CCCHHHHHHH
Confidence 4443 115899999999999985 3477888888888888888 589999999999976 5678888887
Q ss_pred HHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 038914 200 IDGLCKK--------------GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA-----------NDWNEAKHLFIEM 254 (570)
Q Consensus 200 ~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 254 (570)
..++... +.++++++.+.+..... +-|..+|+-+-..+... +.++++++.++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 7776665 34677788887777653 33666666444444333 2345555555555
Q ss_pred HHC
Q 038914 255 MDQ 257 (570)
Q Consensus 255 ~~~ 257 (570)
.+.
T Consensus 265 le~ 267 (331)
T 3dss_A 265 QEL 267 (331)
T ss_dssp HHH
T ss_pred Hhh
Confidence 553
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=1.7e-05 Score=71.37 Aligned_cols=182 Identities=12% Similarity=0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHH
Q 038914 349 VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVH--QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY-IVKAVEL 425 (570)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 425 (570)
+++++..++.+.....+ +..++..-...+...+ .+++++.+++.+.+.+ +.+...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34455555555543222 3344444444444444 2555555555555543 3345555555555555555 3555666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc-----
Q 038914 426 FRTLRILKYELNIVSYNCLIDGLCKH--------------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND----- 486 (570)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 486 (570)
++.+++.+ +-|..+|+.....+... +.++++++.+...+... +-|...|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66555554 44555555544444333 33566666666666542 33445555444444433
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhC
Q 038914 487 ------GQMDKAHGLFLDMEAKGLEPNFVIFNTLML-----GFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 487 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~ 537 (570)
+.++++++.++++.+ +.|+. .|..+.. +....|..+++..++.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 346778888888877 45653 2322221 122457777888888888754
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=6.1e-07 Score=82.62 Aligned_cols=130 Identities=13% Similarity=-0.048 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN---------------IVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
...+..+...+.+.|++++|...|+++.... +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666553 222 367777777888888888888888887775
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 038914 468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKV-IELLHRMD 535 (570)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 535 (570)
. +.+...|..++.+|...|++++|+..|+++++.. +.+...+..+..++...|++++| ...+++|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3355677778888888888888888888877742 23566777777777777777777 44556554
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=1.6e-07 Score=74.24 Aligned_cols=111 Identities=9% Similarity=-0.089 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCCHHHHHH
Q 038914 60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESRIMEAAA 138 (570)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~A~~ 138 (570)
..|+.++..+| .+...+..++..+.+.|++++|+..|++++.. .|+ ...+..+-.++.. .|++++|+.
T Consensus 5 ~~l~~al~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~-------~g~~~~A~~ 73 (142)
T 2xcb_A 5 GTLAMLRGLSE--DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQS-------LGLYEQALQ 73 (142)
T ss_dssp ----CCTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred hhHHHHHcCCH--HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH-------HhhHHHHHH
Confidence 45666666666 67778888999999999999999999999887 443 3334443334433 469999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
.|++.+... +.+..++..+..++...|++++|+..|+.+.+..
T Consensus 74 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 74 SYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998875 3366778889999999999999999999988754
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=8.3e-07 Score=68.42 Aligned_cols=93 Identities=10% Similarity=-0.103 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914 407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND 486 (570)
Q Consensus 407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (570)
......+...|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++.. +.+...|..++.++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 333444444444444444444444433 3334444444444444444444444444444421 11233444444444444
Q ss_pred CChhHHHHHHHHHHH
Q 038914 487 GQMDKAHGLFLDMEA 501 (570)
Q Consensus 487 g~~~~A~~~~~~~~~ 501 (570)
|++++|...|+++.+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444443
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=6.3e-07 Score=86.78 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=97.6
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILIN 118 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 118 (570)
..+...|......|++++|+..|+++++.+| .+..+|..++.++.+.|++++|++.|+++++. .|+ ...+..+-.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 82 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 82 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456678888999999999999999999998 78999999999999999999999999999998 443 334444443
Q ss_pred HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 038914 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING--LCRTGHTIVALNLFE 176 (570)
Q Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 176 (570)
++ ...|++++|+..|+++++.. +.+..++..+..+ +.+.|++++|++.++
T Consensus 83 ~~-------~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SN-------MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HH-------HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HH-------HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44 44579999999999999874 2245566666666 788899999999998
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=8.2e-08 Score=81.10 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
..|+++.|...++......+ .....+..++..+...|++++|+..|++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp ------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555566555554433333 44566788888899999999999999999876
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=2.7e-06 Score=64.36 Aligned_cols=97 Identities=9% Similarity=-0.086 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
..+..++..+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555566666666666666666665532 2244556666666666666666666666666542 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 038914 519 IRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~ 537 (570)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6667777777766666643
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.2e-06 Score=84.42 Aligned_cols=201 Identities=12% Similarity=-0.033 Sum_probs=130.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCH---------------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHH
Q 038914 51 TTITPNDALCVFDYMLNMRPSRPPV---------------TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYN 114 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 114 (570)
+.|++++|++.|..+++..|...+. .++..++..|...|++++|.+++.++...... ++.....
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 4679999999999999887732221 24788999999999999999999998764212 1221111
Q ss_pred HHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914 115 ILINCFLQNGSSLCVESRIMEAAALFTKLRVF----GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 189 (570)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 189 (570)
.+... .|..+...|++++|..++++.... +..+ -..++..++..+...|++++|..+++++.......+. .
T Consensus 96 ~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~ 171 (434)
T 4b4t_Q 96 VLKTL---IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-K 171 (434)
T ss_dssp HHHHH---HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-S
T ss_pred HHHHH---HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-c
Confidence 11111 112233457899999999887653 1111 1345777888899999999999999887654211000 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINPN--AVTYTSLICGFCYANDWNEAKHLFIEMM 255 (570)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 255 (570)
+....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122557788888888888888888888776542 11111 2344555556666777777776666554
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.4e-06 Score=67.08 Aligned_cols=98 Identities=10% Similarity=-0.031 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG 517 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (570)
...+..+...+...|++++|...|++.++.. +.+...|..++.++...|++++|+..++++++.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567778889999999999999999999863 4467889999999999999999999999999852 3357889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 038914 518 FIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~ 537 (570)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999854
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=5.9e-07 Score=70.99 Aligned_cols=95 Identities=16% Similarity=0.046 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC 484 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (570)
.+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++.+.. +.+...+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33344445555555555555555555543 3445555555555555555555555555555532 223344555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 038914 485 NDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 485 ~~g~~~~A~~~~~~~~~ 501 (570)
..|++++|...|+++++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=4.6e-06 Score=63.08 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL 483 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (570)
..+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455566667777788888888887777654 4566777777777777888888888888777642 33456677777788
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 038914 484 CNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (570)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8888888888888877764
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.4e-06 Score=66.36 Aligned_cols=98 Identities=12% Similarity=-0.049 Sum_probs=63.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFN 512 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (570)
+...+..+...+...|++++|...|++..+. .|+ ...+..++.++...|++++|+..++++.+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455666666666777777777777766663 344 4556666677777777777777777766641 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 513 TLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
.+..++...|++++|...+++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6667777777777777777777654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=2.3e-06 Score=72.14 Aligned_cols=127 Identities=14% Similarity=-0.002 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELN----------------IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL 469 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (570)
+..+...+...|++++|...|+++.... +.+ ..++..+..+|...|++++|...++++++..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 4444455555566666666666555432 112 2556666677777777777777777776642
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038914 470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVI-ELLHRMD 535 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~ 535 (570)
+.+...+..++.++...|++++|...|+++++.. +.+...+..+..++...++.+++. ..+..|.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666677777777777777777777776641 224555666666666665555554 4444444
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=4.3e-06 Score=65.42 Aligned_cols=97 Identities=10% Similarity=-0.116 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML 516 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (570)
+...+..+...+...|++++|...|++..+.. +.+...|..++.++...|++++|...++++++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34445555555555555555555555555432 2234455555555555555555555555555531 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 038914 517 GFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~ 535 (570)
++...|++++|...+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555566666655555554
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=1.8e-06 Score=67.60 Aligned_cols=99 Identities=11% Similarity=-0.094 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914 401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI 480 (570)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 480 (570)
.+...+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...++++.+.. +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 455667777777777788888888887777665 4566777777777888888888888888777743 33456777777
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 038914 481 HGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.++...|++++|...|+++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 788888888888888877765
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=2.5e-06 Score=69.36 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH 481 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 481 (570)
+...+..+...+...|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|+++++.. +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777788888888887777765 4566777777777777888888888887777742 334567777777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 038914 482 GLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~ 502 (570)
++...|++++|...|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777778888888877777763
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=2.3e-06 Score=64.02 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=67.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP--NFVIFNTL 514 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 514 (570)
+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666667777777777777777776642 3345666777777777777777777777777642 22 46667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 038914 515 MLGFIRN-NETSKVIELLHRMDMR 537 (570)
Q Consensus 515 ~~~~~~~-g~~~~a~~~~~~~~~~ 537 (570)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777754
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=1.5e-06 Score=67.33 Aligned_cols=95 Identities=8% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL--EPN----FVIFNTL 514 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 514 (570)
+..++..+...|++++|...|+++.+.. +.+...+..++.++...|++++|..+++++..... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444321 22333444444444444444444444444443210 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 038914 515 MLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
..++...|++++|...++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555543
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=2.4e-06 Score=63.97 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHH
Q 038914 152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP--NAV 229 (570)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 229 (570)
..++..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|++..+.. +. +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 77 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKD 77 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHH
Confidence 4455556666666666666666666666543 3345556666666666666666666666666542 22 355
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 038914 230 TYTSLICGFCYA-NDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 230 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 257 (570)
.+..+..++... |++++|.+.++.+...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 556666666666 6666666666666554
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=1.7e-06 Score=67.00 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC--CCC----hhhH
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL--MAD----VVTY 476 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 476 (570)
...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788889999999999999999998876 56788899999999999999999999999987421 111 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
..++.++...|++++|...|+++.+. .|+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 88999999999999999999999984 56766665554443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=4.2e-06 Score=67.94 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449 (570)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (570)
.+..+...+...|++++|+..|+...+.. +.+...+..+..+|...|++++|+..++++.+.. +.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554432 2244445555555555555555555555555443 334445555555555
Q ss_pred hcCCHHHHHHHHHhhhh
Q 038914 450 KHGRLEIAWELFSSLPR 466 (570)
Q Consensus 450 ~~g~~~~A~~~~~~~~~ 466 (570)
..|++++|...|+++++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=3.6e-07 Score=74.07 Aligned_cols=144 Identities=9% Similarity=-0.024 Sum_probs=91.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC-C---
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE-P--- 150 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--- 150 (570)
..++..++..+...|++++|+..+++++... +..........++...|..+...|++++|...+++....... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 3467788888999999999999999987652 211111222233444445556667888888888887653111 0
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 151 -DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221 (570)
Q Consensus 151 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 221 (570)
...++..+..++...|++++|+..+++........+. .......+..+..++...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1345667778888888898888888887653210000 011134566667777777777777777766554
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.46 E-value=1.9e-07 Score=90.01 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=116.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHh
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---------AYNILINCFLQ 122 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 122 (570)
.+++++|+..|+......| .....|..++..+.+.|++++|+..|++++... |+.. .-.....++..
T Consensus 247 l~~~~~A~~~~~~~~~~~~--~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL--EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHH
Confidence 3456677777777776666 677889999999999999999999999999863 3320 01111233333
Q ss_pred cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914 123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (570)
.|..+.+.|++++|+..+++++... +.+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 3444555679999999999999874 3367789999999999999999999999999875 4557788889999
Q ss_pred HHhcCCHHHHHH-HHHHHHh
Q 038914 203 LCKKGFVDKAKE-LFLKMKD 221 (570)
Q Consensus 203 ~~~~g~~~~a~~-~~~~~~~ 221 (570)
+.+.++.+++.. .+..|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 998888887764 4555543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=1.9e-06 Score=65.73 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFI 519 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 519 (570)
+..+...+.+.|++++|...|+++++.. +.+...|..++.++...|++++|+..|+++++. .| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3344445555566666666665555531 223455555555555666666666666655553 23 3445555555556
Q ss_pred hcCCHHHHHHHHHHHH
Q 038914 520 RNNETSKVIELLHRMD 535 (570)
Q Consensus 520 ~~g~~~~a~~~~~~~~ 535 (570)
..|++++|+..+++.+
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666555
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=2.3e-06 Score=65.16 Aligned_cols=96 Identities=7% Similarity=-0.081 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS 233 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (570)
.+..+...+.+.|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..|++..+.+. .+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 45556677777888888888888887764 44677777788888888888888888887777632 25667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQ 257 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~ 257 (570)
+..++...|++++|+..+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777888888888888777664
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=6.7e-06 Score=79.05 Aligned_cols=193 Identities=10% Similarity=-0.094 Sum_probs=120.0
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCC
Q 038914 128 CVESRIMEAAALFTKLRVFGCEPDV----------------FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKP 191 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 191 (570)
...|++++|++.|.++++....... .++..++..|...|++++|.+.+..+....+. .+
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~-----~~ 89 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ-----FA 89 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT-----SC
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----cc
Confidence 3457999999999999876322111 13677888999999999999999887764311 11
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 038914 192 DT----VTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ-- 260 (570)
Q Consensus 192 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 260 (570)
+. .+.+.+...+...|+.++|.++++..... +..+ -..++..+...|...|++++|..+++++...-..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12333444455568888888888776532 2221 2456677778888888888888888776543111
Q ss_pred ---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 261 ---PNVVTFTVIMDELCKNGKMDGASRLLELMILRG--VKPD----TSTYNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 261 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
....++..++..|...|++++|..++++..... +..+ ...+..++..+...+++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 113456667777777777777777777665421 1111 1234444555556666766666665543
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.2e-05 Score=63.82 Aligned_cols=98 Identities=15% Similarity=-0.075 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHH
Q 038914 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN 477 (570)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 477 (570)
+...+..+...+...|++++|...|+++.+.. |+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44556666666777777777777777776543 33 5666667777777777777777777776642 23456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914 478 IMIHGLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (570)
.++.++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777764
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=3.5e-06 Score=68.14 Aligned_cols=133 Identities=12% Similarity=-0.001 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-Ch
Q 038914 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DV 473 (570)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 473 (570)
.++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666677777777777777766543100 11 1356677777888888888888888766521 011 13
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (570)
.++..++.++...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45677888888888999888888887653 1111 134567777888888999999998888763
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=1.4e-05 Score=61.70 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 038914 443 CLIDGLCKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLM 515 (570)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 515 (570)
.+...+...|++++|...|+.+.+.. +.+. ..+..++.++...|++++|...++++.+. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 34445555666666666666655532 1122 24555566666666666666666666553 222 44455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038914 516 LGFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~ 536 (570)
.++...|++++|...++++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666664
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.6e-06 Score=83.85 Aligned_cols=124 Identities=9% Similarity=-0.062 Sum_probs=94.6
Q ss_pred HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI 199 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (570)
+...|..+...|++++|+..|++.++.. +.+..++..+..++.+.|++++|+..++++.+.+ +.+...+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~l 80 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRR 80 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHH
Confidence 3445667778889999999999998874 3356788889999999999999999999999875 4567888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038914 200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG--FCYANDWNEAKHLFI 252 (570)
Q Consensus 200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 252 (570)
..+|...|++++|++.|++..+... .+...+..+..+ +...|++++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999887632 244555555555 778888999988887
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=3.3e-05 Score=59.49 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC---hhhHHHHHH
Q 038914 408 TFIDGLCKNGYIVKAVELFRTLRILKYELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD---VVTYNIMIH 481 (570)
Q Consensus 408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 481 (570)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.. +.+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 44556667777888887777777654 2333 466667777778888888888888777642 222 455677777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 038914 482 GLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~ 502 (570)
++...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 788888888888888887764
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=7.1e-06 Score=66.42 Aligned_cols=63 Identities=16% Similarity=0.016 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 537 (570)
..|..++.+|...|++++|+..++++++.. +.+...|..+..++...|++++|...+++.+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666667777777777777777766642 234566666677777777777777777776654
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=9.9e-06 Score=65.54 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRIL--------K---------YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV 467 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (570)
.+......+.+.|++++|+..|.+.... . .+.+...|..+..+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555556666665555555443 0 0233467777888888888888888888888875
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 038914 468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNF 508 (570)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (570)
. +.+...|..++.+|...|++++|...|+++++. .|+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3 335677888888888888888888888888874 4553
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=2.5e-06 Score=64.62 Aligned_cols=86 Identities=12% Similarity=-0.014 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhhhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038914 451 HGRLEIAWELFSSLPRVG--LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVI 528 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (570)
.|++++|+..|+++++.+ -+.+...+..++.+|...|++++|+..|+++++.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466666777777666632 12234556667777777777777777777776642 224566666677777777777777
Q ss_pred HHHHHHHhC
Q 038914 529 ELLHRMDMR 537 (570)
Q Consensus 529 ~~~~~~~~~ 537 (570)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776643
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=3e-05 Score=60.78 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 038914 475 TYNIMIHGLCNDGQMDKAHGLFLDMEAK-----GLEPN-FVIF----NTLMLGFIRNNETSKVIELLHRMDM-----RNV 539 (570)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~ 539 (570)
.|..+..++...|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++ .++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777777662 11554 3466 6777777777788888777777763 344
Q ss_pred CCCHHHHHH
Q 038914 540 MPDASTLSI 548 (570)
Q Consensus 540 ~p~~~~~~~ 548 (570)
.+.......
T Consensus 139 ~~~~~~~~~ 147 (159)
T 2hr2_A 139 TPGKERMME 147 (159)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 454444433
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=6.6e-05 Score=74.03 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-
Q 038914 384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY----------IVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG- 452 (570)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 452 (570)
.++|+..++.+.... +.+..+|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345666666666543 3344555555555555555 777888888877765 567777777777777777
Q ss_pred -CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 038914 453 -RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG-QMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN--------- 521 (570)
Q Consensus 453 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 521 (570)
++++++..++++.+.. +-+..+|+....++...| .++++++.+.++++.. +-|..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6688888888887753 346677777777777777 7788888888877753 23667777666665552
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccc
Q 038914 522 -----NETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLN 561 (570)
Q Consensus 522 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 561 (570)
+.++++++.+++++... +-|...|....-.+.+.|+..+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998888653 4457788888888888887555
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-05 Score=60.08 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=71.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 038914 472 DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-------AS 544 (570)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~ 544 (570)
+...+..++..+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 44567778888888888888888888887752 336677788888888888888888888888854 344 55
Q ss_pred HHHHHHHHHHccCcccccchhhhh
Q 038914 545 TLSIVVDLLVKNEISLNSIPQFKR 568 (570)
Q Consensus 545 ~~~~l~~~~~~~g~~~~a~~~~~~ 568 (570)
.+..+..++...|+.++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 677777788888888888877664
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=1.6e-05 Score=74.03 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLML 516 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 516 (570)
..+|..+..+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++.+. .| +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555555566666666655555532 223445555555555556666666555555553 22 3444444444
Q ss_pred HHHhcCCHHHH
Q 038914 517 GFIRNNETSKV 527 (570)
Q Consensus 517 ~~~~~g~~~~a 527 (570)
++...++.+++
T Consensus 350 ~~~~~~~~~~a 360 (370)
T 1ihg_A 350 VKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=2.5e-06 Score=64.62 Aligned_cols=86 Identities=16% Similarity=0.036 Sum_probs=55.4
Q ss_pred hCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914 130 ESRIMEAAALFTKLRVFG--CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (570)
.|++++|+..|++.++.+ .+.+..++..+..++...|++++|+..|+++.+.+ +.+...+..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 357777777777777653 12234566667777777777777777777777654 344666777777777777
Q ss_pred CHHHHHHHHHHHHhC
Q 038914 208 FVDKAKELFLKMKDE 222 (570)
Q Consensus 208 ~~~~a~~~~~~~~~~ 222 (570)
++++|++.|++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.9e-05 Score=76.11 Aligned_cols=95 Identities=13% Similarity=-0.005 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038914 438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLML 516 (570)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 516 (570)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++. .| +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3556666666666777777777776666642 234556666666666777777777777666663 33 3345556666
Q ss_pred HHHhcCCHHHHHH-HHHHHH
Q 038914 517 GFIRNNETSKVIE-LLHRMD 535 (570)
Q Consensus 517 ~~~~~g~~~~a~~-~~~~~~ 535 (570)
++.+.|+++++.+ .+++|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6666666655542 344443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.1e-05 Score=75.06 Aligned_cols=92 Identities=9% Similarity=-0.050 Sum_probs=77.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914 472 DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD 551 (570)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 551 (570)
+..+|..++.+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45788999999999999999999999999852 3367889999999999999999999999999753 335778888888
Q ss_pred HHHccCcccccchh
Q 038914 552 LLVKNEISLNSIPQ 565 (570)
Q Consensus 552 ~~~~~g~~~~a~~~ 565 (570)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887766544
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=3.8e-05 Score=60.22 Aligned_cols=96 Identities=13% Similarity=-0.034 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC
Q 038914 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYEL------NI-----VSYNCLIDGLCKHGRLEIAWELFSSLPRV-----GL 469 (570)
Q Consensus 406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 469 (570)
+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445556667777777777777776653110 22 37888888899999999999999888873 11
Q ss_pred CCC-hhhH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 470 MAD-VVTY----NIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 470 ~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.|+ ...| ...+.++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 4678 8899999999999999999999876
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=3.7e-06 Score=80.72 Aligned_cols=140 Identities=9% Similarity=-0.081 Sum_probs=94.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----CC-CCC-cchH
Q 038914 83 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF-----GC-EPD-VFTY 155 (570)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~ 155 (570)
..+..+|++++|+.++++++......-......++..+..++..|..+|++++|..++++.++. |. .|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466899999999999998765222111111223333444445566678999999999998753 21 223 3468
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+.|..+|...|++++|+.+++++...... .|...+....+...+..++...+.+++|+.+|..+.+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998753210 11112223445667777888888889999888888653
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=0.00011 Score=57.26 Aligned_cols=111 Identities=9% Similarity=-0.058 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHH
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKA 492 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 492 (570)
+++++|...|++..+.+ .+... +...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777776665 23322 5556666666777777777776643 55666667777766 6777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038914 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIR----NNETSKVIELLHRMDMRN 538 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 538 (570)
..+|++..+.| +...+..|...|.. .+++++|..++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777653 55666667777776 677777777777777665
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.08 E-value=0.00012 Score=57.03 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=82.1
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh----
Q 038914 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK---- 205 (570)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 205 (570)
.+++++|+.+|++..+.| +..+. |...|...+.+++|+.+|++..+.+ +...+..|...|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSS
T ss_pred ccCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCCC
Confidence 357788888888888765 33333 6666666677788888888887754 56777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 038914 206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQG 258 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 258 (570)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 778888888888877764 56667777777777 677788888877777765
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.2e-05 Score=74.08 Aligned_cols=128 Identities=14% Similarity=-0.036 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914 403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV------------------SYNCLIDGLCKHGRLEIAWELFSSL 464 (570)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (570)
...+..+...+.+.|++++|...|+++.... |+.. .|..+..+|.+.|++++|+..++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677777888899999999999988763 3332 5556666666666666666666666
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 038914 465 PRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLG-FIRNNETSKVIELLHRMD 535 (570)
Q Consensus 465 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~ 535 (570)
++.. +.+...|..++.+|...|++++|...|+++++. .|+ ...+..+... ....+..+++...+++|.
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6532 224456666666666666666666666666552 332 3333333333 223344555666666665
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1.2e-05 Score=73.90 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY 155 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 155 (570)
..+..++..+.+.|++++|+..|++++.. .|+... +.. .+++.++...+. ..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~-------~~~~~~~~~~l~----------~~~~ 233 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQL-------YGKYQDMALAVK----------NPCH 233 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTC-------CHHHHHHHHHHH----------THHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhh-------cccHHHHHHHHH----------HHHH
Confidence 44566666777777777777777777665 333221 000 123333322111 1245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 038914 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD-ENINPNAVTYTSL 234 (570)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l 234 (570)
..+..++.+.|++++|+..++++++.+ +.+...|..+..+|...|++++|+..|+++.. . +-+...+..+
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L 304 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRREL 304 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 555555666666666666666665543 23455556666666666666666666655421 1 0122333333
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHH
Q 038914 235 ICG-FCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 235 ~~~-~~~~~~~~~a~~~~~~~~~ 256 (570)
... ....+..+.+..+|..+..
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 333 2233445555555555554
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=1.6e-05 Score=76.43 Aligned_cols=130 Identities=9% Similarity=-0.073 Sum_probs=88.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHH
Q 038914 162 LCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVTYTS 233 (570)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 233 (570)
+...|++++|+.++++.+..... +|...+....+++.|+.+|...|++++|+.++++.+.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999998865322 22212223567899999999999999999998887642 2 2223456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 234 LICGFCYANDWNEAKHLFIEMMDQ-----GVQ-P-NVVTFTVIMDELCKNGKMDGASRLLELMIL 291 (570)
Q Consensus 234 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 291 (570)
|...|...|++++|+.++++.... |.. | ...+...+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776542 221 1 223344555566666777777777776654
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=0.00057 Score=67.34 Aligned_cols=173 Identities=11% Similarity=-0.031 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-
Q 038914 349 VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ----------VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG- 417 (570)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 417 (570)
.++|++.+++++..+.. +..+|..-...+...++ +++++..++.+.+.. +.+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35667777777765322 33445544445555555 788888888888765 567778888888888888
Q ss_pred -CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc---------
Q 038914 418 -YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND--------- 486 (570)
Q Consensus 418 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 486 (570)
++++++..++++.+.+ +-+..+|+.-..++...| .++++++.++++++.. +-|...|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999998877 667888888888888888 8899999999988863 44667888877776653
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914 487 -----GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSK 526 (570)
Q Consensus 487 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (570)
+.++++++++.+++... +-|...|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999988852 3367788888777777766443
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=7.2e-06 Score=64.11 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY----------DTVLSLFKRLNSTGLFPD-LYAYNILINCFL 121 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (570)
+.+++|++.++.+++.+| .+..+|+.++.++...+++ ++|+..|+++++. .|+ ...+..+-.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 468899999999999999 8999999999999998875 5999999999998 454 344555555554
Q ss_pred hcCC----cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914 122 QNGS----SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN 160 (570)
Q Consensus 122 ~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 160 (570)
..|. .....|++++|+..|++.++. .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4320 011125899999999999987 566655544444
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=2.1e-05 Score=61.54 Aligned_cols=95 Identities=8% Similarity=-0.058 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHhhhhCCCCC-ChhhHHHHHHHH
Q 038914 415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRL----------EIAWELFSSLPRVGLMA-DVVTYNIMIHGL 483 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 483 (570)
+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++. .| +..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 4455666677777666665 55666666666666665543 4777777777663 34 345666777777
Q ss_pred HhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038914 484 CNDG-----------QMDKAHGLFLDMEAKGLEPNFVIFNTL 514 (570)
Q Consensus 484 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (570)
...| ++++|++.|+++++ +.|+...|...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 6553 67777777777777 45665554433
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=6.4e-05 Score=56.46 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCCHH
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESRIM 134 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (570)
+.|+..|+.+++.+| .+...+..++.++...|++++|+..|++++... |+ ...+..+-.++ ...|+++
T Consensus 2 ~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~-------~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTL-------QGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-------HHHTCHH
T ss_pred hHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH-------HHcCCHH
Confidence 468899999999998 788999999999999999999999999999873 43 33343333333 4457999
Q ss_pred HHHHHHHHHHhc
Q 038914 135 EAAALFTKLRVF 146 (570)
Q Consensus 135 ~A~~~~~~~~~~ 146 (570)
+|...|++.+..
T Consensus 71 ~A~~~~~~al~~ 82 (115)
T 2kat_A 71 GARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=9.8e-05 Score=54.87 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
.+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|+..++++++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444421 22334444444444444444444444444444
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00031 Score=49.79 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
..+..++..+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555555555556655555555531 2234455555555556666666666666555432 22344444444444
Q ss_pred Hc
Q 038914 554 VK 555 (570)
Q Consensus 554 ~~ 555 (570)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00032 Score=49.72 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (570)
.+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554431 2233444555555555555555555555554431 123344444444443
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00031 Score=52.60 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038914 170 VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKH 249 (570)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 249 (570)
.|+..|+++.+.+ +.+...+..+..++...|++++|+..|++..... +.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666543 3445666666666667777777777776666543 2245566666666666666666666
Q ss_pred HHHHHHH
Q 038914 250 LFIEMMD 256 (570)
Q Consensus 250 ~~~~~~~ 256 (570)
.|++...
T Consensus 75 ~~~~al~ 81 (115)
T 2kat_A 75 AWESGLA 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00023 Score=51.73 Aligned_cols=63 Identities=19% Similarity=0.073 Sum_probs=29.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (570)
+...+..+..+|...|++++|...|+++++.. +.+...|..++.+|...|++++|...|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555555554431 1223444445555555555555555554444
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.48 E-value=0.0081 Score=51.92 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcccCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 168 TIVALNLFEEMANGNGEIGVVCKPD---TVTYTTIIDGLCKK-----GFVDKAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 168 ~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
...|..+++++.+.+ |+ ...|..+...|.+. |+.++|.+.|++.+..+..-+..++......++
T Consensus 179 l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 467888999999865 44 56899999999994 999999999999998744334788888888888
Q ss_pred hc-CCHHHHHHHHHHHHHCCCC--CChhh
Q 038914 240 YA-NDWNEAKHLFIEMMDQGVQ--PNVVT 265 (570)
Q Consensus 240 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~ 265 (570)
.. |+.+++.+.+++.+..... |+...
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 85 9999999999999997655 54433
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.47 E-value=0.0005 Score=49.87 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=54.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+..++..+..++.+.|++++|+..|+++.+.+ +.+...|..+..+|...|++++|++.|++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888888999999999999999998865 445778888899999999999999998887753
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.40 E-value=0.004 Score=56.28 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=48.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLS 547 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 547 (570)
+.+..+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.+++.... .|...++.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 345566666666666667777777777777774 366666666666777777777777777777653 46655553
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00012 Score=69.00 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=43.8
Q ss_pred CCCChhHHHHHHHHHHhc-----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914 51 TTITPNDALCVFDYMLNM-----RPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNST 104 (570)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (570)
..|++++|+.+++++++. +|.+++ ..+++.++.+|..+|++++|+.++++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 467999999999998863 453333 356889999999999999999999998753
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00036 Score=50.45 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
...|++++|+..|+.+++.+| .+.. +|..++.++...|++++|++.|+++++. .|+......
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~------------- 73 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQA------------- 73 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH-------------
T ss_pred HHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHH-------------
Confidence 346799999999999999998 7788 9999999999999999999999999987 444322110
Q ss_pred hhCCHHHHHHHHHHHHh
Q 038914 129 VESRIMEAAALFTKLRV 145 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~ 145 (570)
.+.+.++...|++...
T Consensus 74 -~~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 74 -RKMVMDILNFYNKDMY 89 (99)
T ss_dssp -HHHHHHHHHHHCCTTH
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 0256667777766544
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.25 E-value=3.3e-07 Score=83.76 Aligned_cols=260 Identities=12% Similarity=0.105 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES 131 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (570)
-++.+.|.++.+++ ..+..|..++.+....++..+|++.|-++. |...|..++.++.+. |
T Consensus 38 i~~ldRa~eyA~~~-------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~-------~ 97 (624)
T 3lvg_A 38 IGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTS-------G 97 (624)
T ss_dssp GCCSTTTTTSSSSC-------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTS-------S
T ss_pred ccccHHHHHHHHHh-------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhC-------C
Confidence 34566665555544 445677888888888888877777664332 344566677766654 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914 132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK 211 (570)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (570)
.+++-+..+.-..+. ..++.+=+.|+-+|.+.++..+-.+. +. .|+..-...+++-|...|.++.
T Consensus 98 ~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---------~~N~A~iq~VGDrcf~e~lYeA 162 (624)
T 3lvg_A 98 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---------GPNNAHIQQVGDRCYDEKMYDA 162 (624)
T ss_dssp CCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---------CCSSSCTHHHHHHHHHSCCSTT
T ss_pred CHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---------CCCcccHHHHHHHHHHccCHHH
Confidence 777777766554443 22444555777888887776653322 21 3555566667777777777777
Q ss_pred HHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038914 212 AKELFLKMKDEN--------------------INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMD 271 (570)
Q Consensus 212 a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 271 (570)
|.-+|..+.... -.-++.||..+-.+|...+.+.-|.-.--.++-. ..-...++.
T Consensus 163 AKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~ 237 (624)
T 3lvg_A 163 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELIN 237 (624)
T ss_dssp SSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGS
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHH
Confidence 776665543210 0125567777777777777766655444443321 111223445
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHhhHHHHHHHHH
Q 038914 272 ELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMES-NGCMH------DVVSYSILINGYC 344 (570)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~ 344 (570)
.|-..|.+++.+.+++..+.. -.....+|+.|.-.|++- ++++..+.++..-+ .+++. ....|.-++-.|.
T Consensus 238 ~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 238 YYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp SSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh
Confidence 566666677766666665532 123445566666555554 23333333322111 11111 2234555555555
Q ss_pred hcCCHHHHH
Q 038914 345 KTKDVEEGL 353 (570)
Q Consensus 345 ~~~~~~~A~ 353 (570)
.-.+++.|.
T Consensus 316 ~ydE~DnA~ 324 (624)
T 3lvg_A 316 KYEEYDNAI 324 (624)
T ss_dssp HHTCHHHHH
T ss_pred cchhHHHHH
Confidence 555555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.013 Score=53.06 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=28.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHH--HhcC---ChHHHHHHHHHHHhCCCCCCHh
Q 038914 65 MLNMRPSRPPVTSFNILFGCL--AKTK---HYDTVLSLFKRLNSTGLFPDLY 111 (570)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~~~~~~~~ 111 (570)
+....| .+..+|...+++. ...+ ...+|+.+|+++++. .|+..
T Consensus 186 ~~~~~p--~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a 233 (372)
T 3ly7_A 186 LQKILP--HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFT 233 (372)
T ss_dssp HHHHSC--SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HhccCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCH
Confidence 334444 6778887766544 3333 457899999999988 67643
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.00073 Score=63.75 Aligned_cols=92 Identities=7% Similarity=-0.176 Sum_probs=62.0
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHH
Q 038914 165 TGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVTYTSLIC 236 (570)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~ 236 (570)
.|++++|+.++++.+..... +|...+....+++.|+.+|...|++++|+.++++.+.. | .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57888999998887764321 22112222567888888888888888888888877642 2 1122456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 038914 237 GFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~ 256 (570)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77778888777777776654
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.0055 Score=43.32 Aligned_cols=50 Identities=6% Similarity=0.157 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914 54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG 105 (570)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (570)
..++|...|+++++.+| .++.++..++..+.+.|++++|+..|++++...
T Consensus 24 ~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 36899999999999999 899999999999999999999999999999984
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0016 Score=61.57 Aligned_cols=98 Identities=11% Similarity=-0.009 Sum_probs=70.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHH
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVT 230 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 230 (570)
+..+.+.|++++|+.++++++..... +|...+....+++.|+.+|...|++++|+.++++++.. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999999875422 22222223567888999999999999999998887642 2 1122456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888777654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0015 Score=61.66 Aligned_cols=100 Identities=10% Similarity=-0.112 Sum_probs=69.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----C-CCCC-cc
Q 038914 81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF-----G-CEPD-VF 153 (570)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~ 153 (570)
.+..+.++|++++|++++++++......-......++..+..++..|..+|++++|+.++++++.. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345567889999999999999865322111111223333444444566678999999999988753 2 1223 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038914 154 TYNTLINGLCRTGHTIVALNLFEEMAN 180 (570)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 180 (570)
+++.|..+|...|++++|+.+++++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 588899999999999999999998875
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.02 E-value=7.2e-08 Score=87.98 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=167.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038914 89 KHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT 168 (570)
Q Consensus 89 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (570)
++.++|.+..++.-. | ..|..+-.+..+ .+++.+|+..|=+ ..|+..|..+|.+..+.|.+
T Consensus 39 ~~ldRa~eyA~~~n~----p--~VWs~LgkAqL~-------~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~ 99 (624)
T 3lvg_A 39 GNLDRAYEFAERCNE----P--AVWSQLAKAQLQ-------KGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW 99 (624)
T ss_dssp CCSTTTTTSSSSCCC----C--CCSSSHHHHTTT-------SSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCC
T ss_pred cccHHHHHHHHHhCC----c--cHHHHHHHHHHc-------cCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCH
Confidence 455666555443332 2 233344444433 4588888776543 23677888999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038914 169 IVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAK 248 (570)
Q Consensus 169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 248 (570)
++-+..+..+.+.. .+...=+.|+-+|++.++..+.++++. .||..-...+.+-|...|.++.|.
T Consensus 100 edLv~yL~MaRk~~--------ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 100 EELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp TTHHHHHHTTSTTC--------CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HHHHHHHHHHHHHh--------cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHH
Confidence 99999998887753 345566789999999999877655542 356666777888888888888887
Q ss_pred HHHHHHHHC--------------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914 249 HLFIEMMDQ--------------------GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308 (570)
Q Consensus 249 ~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (570)
-+|..+... .-.-+..+|..+-.+|...+++.-|.-.--.++-. ..-...++..|
T Consensus 165 ilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~Y 239 (624)
T 3lvg_A 165 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYY 239 (624)
T ss_dssp TTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSS
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHH
Confidence 777654321 01236678999999999999888876654444432 11233456667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHhhc
Q 038914 309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIR------PTVVTYHTLFLGLFEV 381 (570)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~ 381 (570)
-..|-+++-+.+++...... ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|..++-.|.+-
T Consensus 240 E~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 240 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp STTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 78888999888888876432 34667788888777765 455555554433222 111 0233455566666666
Q ss_pred CCHHHHH
Q 038914 382 HQVEHAL 388 (570)
Q Consensus 382 ~~~~~a~ 388 (570)
.+++.|.
T Consensus 318 dE~DnA~ 324 (624)
T 3lvg_A 318 EEYDNAI 324 (624)
T ss_dssp TCHHHHH
T ss_pred hhHHHHH
Confidence 6666554
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.92 E-value=0.006 Score=43.79 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914 377 GLFEVHQVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRIL 432 (570)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 432 (570)
.+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|+++.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344444444444444444432 22333 4444444444455555555555544443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.86 E-value=0.013 Score=45.30 Aligned_cols=80 Identities=18% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 038914 455 EIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVIE 529 (570)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 529 (570)
..+.+-|.+..+.+ .++..+...+.+++++++ +.++++.+++...+.. .| +...+..+..++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444454444443 345555556666666666 4446666666666642 23 24455556666667777777777
Q ss_pred HHHHHHh
Q 038914 530 LLHRMDM 536 (570)
Q Consensus 530 ~~~~~~~ 536 (570)
+++++++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777664
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.80 E-value=0.032 Score=58.21 Aligned_cols=49 Identities=10% Similarity=-0.070 Sum_probs=29.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCcc--cccchhhhh
Q 038914 515 MLGFIRNNETSKVIELLHRMDMRNVMPDA----STLSIVVDLLVKNEIS--LNSIPQFKR 568 (570)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~--~~a~~~~~~ 568 (570)
+..|.+.+++++|..+.++. .|.. .......+.+...|+. .+|+..++.
T Consensus 756 ~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~~ 810 (814)
T 3mkq_A 756 KDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSERVCGAEG 810 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGGG
T ss_pred HHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHHhhCCccc
Confidence 34455556666666655543 3444 5666666677778864 466666654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.72 E-value=0.015 Score=41.03 Aligned_cols=64 Identities=5% Similarity=-0.033 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 437 NIVSYNCLIDGLCKHGR---LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 437 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+...+..+..++...++ .++|..++++.++.. +.+......++..+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433222 344555555444431 22234444444444455555555555555444
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.54 E-value=0.016 Score=50.12 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAK-----TKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL 127 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (570)
+....|...++++++.+|...+..+|..++..|.. -|+.++|.+.|++++..++.-+.......-..++..
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~---- 252 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP---- 252 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT----
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----
Confidence 34679999999999999944478899999999999 499999999999999984321222322222322221
Q ss_pred hhhCCHHHHHHHHHHHHhcCCC--CCcchHH
Q 038914 128 CVESRIMEAAALFTKLRVFGCE--PDVFTYN 156 (570)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 156 (570)
.|+.+++.+.+++.+..... |+....+
T Consensus 253 --~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 253 --LNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp --TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred --cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 37999999999999987555 4443333
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.022 Score=44.01 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHH
Q 038914 420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHG---RLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHG 494 (570)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 494 (570)
..+.+.|.+....+ +++..+...+..++++.+ +.+++..+|++..+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444555554444 456666666666777766 4557777777776643 23 23445556666777777777777
Q ss_pred HHHHHHHCCCCCC
Q 038914 495 LFLDMEAKGLEPN 507 (570)
Q Consensus 495 ~~~~~~~~~~~p~ 507 (570)
+++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777777 4564
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.43 E-value=0.086 Score=40.11 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=67.0
Q ss_pred CChhhHHHHHHHHHhcCCH------HHHHHHHHhhhhCCCCCChh-hHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 038914 436 LNIVSYNCLIDGLCKHGRL------EIAWELFSSLPRVGLMADVV-TYNIMIH------GLCNDGQMDKAHGLFLDMEAK 502 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 502 (570)
.|..+|-..+....+.|+. +...++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555555 5556666665553 344321 1111111 122347888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914 503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553 (570)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 553 (570)
+-.- ...|.....--.++|+.+.|.+++.+.+..+- .+...+...+.-+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhh
Confidence 2222 66666667777788888888888888886552 2345555555444
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.048 Score=56.92 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914 341 NGYCKTKDVEEGLN-LYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI 419 (570)
Q Consensus 341 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 419 (570)
......+++++|.+ ++..+ ++......++..+.+.|.++.|+.+.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 44456788888876 44221 1123336677777788888888766532 11 112334567899
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499 (570)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (570)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...+...|+.+...++.+.+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9888876432 4677899999999999999999999988764 345556666688888777776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 500 EAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD 535 (570)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (570)
...| + ++....++.+.|++++|++++.++.
T Consensus 734 ~~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG---K---FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC---c---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 6543 2 2334456777889999988887774
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.15 Score=40.41 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=62.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914 160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC 239 (570)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (570)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~ 71 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYL 71 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHH
Confidence 3345667777777776654 1356777777777777777777777776653 444555566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914 240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLEL 288 (570)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 288 (570)
..|+.+....+-+.....| -++....++.-.|+++++.++|.+
T Consensus 72 ~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666555544444432 244445555566777777776644
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.21 E-value=0.064 Score=40.79 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=77.1
Q ss_pred CCCHHhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914 72 RPPVTSFNILFGCLAKTKHY------DTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLR 144 (570)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (570)
+.|.++|-..+..+-+.|++ ++.+++|+++... ++|+. ..+...+..+.+-. .+...++.++|..+|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 37888898888888888999 8999999999886 34432 22222222222211 1233479999999999997
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914 145 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (570)
..+ +.-..+|......-.+.|+..+|..++......+
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 752 3235567777777789999999999999999875
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.12 E-value=0.062 Score=38.84 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVG------LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+..++..+...|++..|...|+.+.+.. -.+....+..++.++.+.|+++.|..+++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444445555555555555555444310 011223444444455555555555555544444
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.07 E-value=0.034 Score=40.26 Aligned_cols=72 Identities=13% Similarity=-0.044 Sum_probs=54.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
+...+..++..+.+.|++..|..+|+.+.+...+......+....+..|..++.+.|+++.|...++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445567789999999999999999999887421100001234667888889999999999999999988875
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.51 Score=37.46 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=61.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 038914 201 DGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMD 280 (570)
Q Consensus 201 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 280 (570)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345667777777776655 1566777777777777777777777765432 344444555666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 281 GASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVS 323 (570)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (570)
...++-+.....| -++....++...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6655555554443 133444455566777777666644
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.32 E-value=0.15 Score=37.82 Aligned_cols=81 Identities=19% Similarity=0.062 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 038914 454 LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK---AHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVI 528 (570)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 528 (570)
...+.+-|......| .++..+-..+.++++++.+... ++.+++...+.+ .| .......+..++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444454444433 2555555566666666665555 666666665542 12 2334455566777777777777
Q ss_pred HHHHHHHh
Q 038914 529 ELLHRMDM 536 (570)
Q Consensus 529 ~~~~~~~~ 536 (570)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777775
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.26 E-value=0.14 Score=37.89 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHH
Q 038914 418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI---AWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKA 492 (570)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 492 (570)
....+.+.+......+ .++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 4666666667777777776555 777777777653 23 223444566677888888888
Q ss_pred HHHHHHHHHCCCCCC
Q 038914 493 HGLFLDMEAKGLEPN 507 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~ 507 (570)
.++++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888887 4564
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.48 E-value=1.1 Score=33.44 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=88.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914 380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459 (570)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (570)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. .|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 456666777766666553 23444555554444444444444444444221 121 12444444444
Q ss_pred HHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914 460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNV 539 (570)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (570)
.+-.+- .+...++..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.++++++.+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444332 24455667777888899999999998886543 578888899999999999999999999999998885
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.42 E-value=5.4 Score=41.24 Aligned_cols=273 Identities=10% Similarity=0.024 Sum_probs=148.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHhhHHH--HH
Q 038914 272 ELCKNGKMDGASRLLELMILRGVKPDT--STYNTLIDGYCLTGKIDRARELFVSMESNGC-------MHDVVSYSI--LI 340 (570)
Q Consensus 272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~ 340 (570)
+....|+.++++.++...+..+...+. ..-..+.-+....|..+++..++...+...- .+....-.. |.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355677888887777665542101122 2223334445556665677777776554321 011111222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--HHHhc
Q 038914 341 NGYCKTKDVEEGLNLYRKMLSKGIRPTV--VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID--GLCKN 416 (570)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 416 (570)
-+|.-.++ +++.+.+..+....- +.. ..-..+...+.-.|+.+....++..+.+.. +..+...++. ++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33333444 456666666655311 111 112233344556788888888888776532 3333333333 44467
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSY--NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHG 494 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 494 (570)
|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 89888888888887642 2322222 234456778889888887988887631 2233333344445556777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038914 495 LFLDMEAKGLEPNFVIFNTLMLGFIRNNET-SKVIELLHRMDMRNVMPDASTLSIVVDLLVK 555 (570)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 555 (570)
++..+.+.+ .|....-..+..+....|.. .+++.++..+.. .+|..+-..-+.+++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 777666543 34333333444455555554 678888888873 3555555444444443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.28 Score=49.33 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM 534 (570)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (570)
|...|+++.|+++-+++... .+-+..+|..|+.+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44566777777777776663 2224667777777777777777777666665
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.19 E-value=1.3 Score=33.09 Aligned_cols=63 Identities=19% Similarity=0.080 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG 468 (570)
Q Consensus 405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (570)
.+...+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444455555555555555554332 24555555555555555555555555555555544
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=4.8 Score=38.06 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=83.8
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HhcC
Q 038914 277 GKMDGASRLLELMILR-----GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY----CKTK 347 (570)
Q Consensus 277 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 347 (570)
|++.+|++.+-.+.+. +..........++..|...++++...+.+..+...... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777766555432 23334556666777777777777776666555433211 112222333222 1222
Q ss_pred CHHHHHH--HHHHHHhC--C-CCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCcC---HHHHHHHHHHHH
Q 038914 348 DVEEGLN--LYRKMLSK--G-IRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRN--HVAAN---TYIYTTFIDGLC 414 (570)
Q Consensus 348 ~~~~A~~--~~~~~~~~--~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 414 (570)
..+.... +...+... | +... ......+...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221111 11110000 0 0000 011234455555666666666666655431 11111 123444455555
Q ss_pred hcCCHHHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914 415 KNGYIVKAVELFRTLRI----LKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPR 466 (570)
Q Consensus 415 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (570)
..+++.+|..++.++.. ...+|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66666666666555431 111111 12334444455555666666555555543
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.44 E-value=0.31 Score=37.96 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=70.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcC--CC-
Q 038914 74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFG--CE- 149 (570)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~- 149 (570)
+..++..-+..+...|.|+.|+-+.+.++... ..|+..+-..-...+...|+.+..+|+|..|...|++.+... +.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666778889999999999988866542 234432222223333334456777889999999999965320 00
Q ss_pred ---------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914 150 ---------------------PDVFTYNTLINGLCRTGHTIVALNLFEEMANG 181 (570)
Q Consensus 150 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (570)
.+...-..+..++.+.+++++|+.+++.+...
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 01123345778889999999999999987654
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.25 E-value=8.8 Score=39.72 Aligned_cols=320 Identities=12% Similarity=-0.010 Sum_probs=173.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHhhHHHHHH
Q 038914 236 CGFCYANDWNEAKHLFIEMMDQGVQPNVV--TFTVIMDELCKNGKMDGASRLLELMILRGV-------KPDTSTYNTLID 306 (570)
Q Consensus 236 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 306 (570)
-+....|+.++++.+++.....+...+.. .-..+.-..+..|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 44566788888877777655421111222 222333345566666678887777665421 011122223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHhhc
Q 038914 307 GYCLTGK-IDRARELFVSMESNGCMHDV--VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTL--FLGLFEV 381 (570)
Q Consensus 307 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 381 (570)
+.+..|. -+++...+..+..... ... ..--.+...+...|+.+....++..+.+.. +......+ .-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333332 2455666666655321 111 112234445667788888888888777641 33333333 3344467
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914 382 HQVEHALKLFDEMRRNHVAANTYI--YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459 (570)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (570)
|+.+.+..+++.+.... .|.... ...+.-+|+..|+......++..+.... ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888887642 222222 2234456778899888888988887642 2333333444445556787777888
Q ss_pred HHHhhhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcC-------CHHHHHH
Q 038914 460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQM-DKAHGLFLDMEAKGLEPNFVIFNTLML--GFIRNN-------ETSKVIE 529 (570)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g-------~~~~a~~ 529 (570)
+++.+.+.+ .|...--..+..+....|.. .++...+..+.. .+|..+-...+. +..-.| +....++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 888777653 44443333444444445543 578888888875 345444433332 333333 3334444
Q ss_pred HHHHHHh-CCCCCCHHHHHHHHHHHHccCcccccchh
Q 038914 530 LLHRMDM-RNVMPDASTLSIVVDLLVKNEISLNSIPQ 565 (570)
Q Consensus 530 ~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 565 (570)
.+.+... ..-.++......+...+...|+-.--+..
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~ 728 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4444432 22234566777777878888776544443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.10 E-value=0.73 Score=42.77 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 038914 440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA-----KGLEPNFVI 510 (570)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 510 (570)
+...++.++...|++++|...+..+.... +-+...|..++.++...|+..+|++.|+++.+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33445555556666666666666655532 33455666666666666666666666665433 355555443
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=6.6 Score=37.11 Aligned_cols=198 Identities=13% Similarity=0.026 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHhc----CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914 52 TITPNDALCVFDYMLNM----RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL 127 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (570)
.|++++|+..+-.+.+. ............++..+...|+++...+.+..+.+........ ...++..+... .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i~~~V~~~~~~---l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-IQYMIQKVMEY---L 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-HHHHHHHHHHH---H
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH---H
Confidence 46888998877665542 1113446667788899999999999988887776553333222 22333322210 0
Q ss_pred hhhCCHHH--HHHHHHHHHhcCCCCC---c-----chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914 128 CVESRIME--AAALFTKLRVFGCEPD---V-----FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT 197 (570)
Q Consensus 128 ~~~~~~~~--A~~~~~~~~~~~~~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
......+. -..+.+.+. .+... . .....|...+...|++.+|..++..+...-.... ...--...+.
T Consensus 105 ~~~~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~-~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM-EMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS-CHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 00111111 111111111 11111 1 1234577888889999999999999875321000 0001145677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 198 TIIDGLCKKGFVDKAKELFLKMKD----ENINPN--AVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 198 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
..+..|...+++.+|..++.++.. ...+|+ ...+...+..+...++|.+|-..|.++..
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 778888888999999888887642 211222 23455666777777888887777766643
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.82 E-value=1.6 Score=32.50 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=50.0
Q ss_pred CCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 470 MADVVTYNIMIHGLCNDGQM---DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD 542 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 542 (570)
.|+..+--.+.+++.++.+. .+++.+++...+.+-.-....+..+..++.+.|++++|+++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 56666666777788877644 45777787777654111345667777788888999999998888885 4565
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.79 Score=46.20 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc------CCC
Q 038914 79 NILFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYAY--NILINCFLQNGSSLCVESRIMEAAALFTKLRVF------GCE 149 (570)
Q Consensus 79 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~ 149 (570)
..++..+...|+ ++.|+.+++++... .|....+ ..++..+...+ .+--+|.+++.+.++. ..+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~------~~Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIE------TKELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCG------GGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhhhhhhhhc
Confidence 345555555666 58899999999887 4544332 22233222221 1333455555544321 111
Q ss_pred C-Ccc----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914 150 P-DVF----------TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLK 218 (570)
Q Consensus 150 ~-~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 218 (570)
+ +.. ....-...|...|+++-|+.+.+++.... +.+-.+|..|..+|...|+++.|+-.+..
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 1 111 12222344667899999999999999853 45588999999999999999999999988
Q ss_pred HH
Q 038914 219 MK 220 (570)
Q Consensus 219 ~~ 220 (570)
+.
T Consensus 397 cP 398 (754)
T 4gns_B 397 MP 398 (754)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.53 E-value=4 Score=34.85 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=79.5
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914 49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC 128 (570)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (570)
+++.|++++|+......++.+| .|...-..+++.++-.|+|++|.+-++.+.+. .|+......+....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~l-------- 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHL-------- 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHH--------
T ss_pred HHhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHH--------
Confidence 4578899999999999999999 89999999999999999999999999999887 55543322222211
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCC----cc-hHHHHHHHHH--hcCChhHHHHHHHHHHhCC
Q 038914 129 VESRIMEAAALFTKLRVFGCEPD----VF-TYNTLINGLC--RTGHTIVALNLFEEMANGN 182 (570)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~----~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 182 (570)
-.|...=.++..-+-.|. +. -...++.++. ..|+.++|..+-+.+.+..
T Consensus 75 -----I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 75 -----VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -----HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 122222233333222221 12 2334555543 4699999999988886643
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.22 E-value=3.7 Score=44.37 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD--TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT 232 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (570)
|..++..+-+.+.++.+++.-..+.+.... -.++ ...|..+...+...|++++|...+-.+..... -...+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~----~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr 975 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKET----DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL 975 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCS----CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccC----CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence 566777777888888888877777654310 0111 22567778888888888888888877766533 355666
Q ss_pred HHHHHHHhcCCHH
Q 038914 233 SLICGFCYANDWN 245 (570)
Q Consensus 233 ~l~~~~~~~~~~~ 245 (570)
.|+..++..|..+
T Consensus 976 ~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 976 DFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHCCHH
T ss_pred HHHHHHHhCCChh
Confidence 6776666665544
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.48 E-value=0.71 Score=42.83 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEM 254 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 254 (570)
++..+...|+.++++..+..+... .+.+...|..+|.++...|+..+|++.|+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555555444444433 2334444555555555555555555554443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.44 E-value=9.1 Score=41.42 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914 265 TFTVIMDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILI 340 (570)
Q Consensus 265 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (570)
-|..++..+-+.+.++.+.++-...++.....+. ..|..+.+.+...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455555556666666666555555443211111 1345555666666666666665555544321 223344444
Q ss_pred HHHHhc------------CCHHHHHHHHHHHHh-C-CCCCChhhHHHHHHHHhhcCCHHHHHH-HHHHHHh
Q 038914 341 NGYCKT------------KDVEEGLNLYRKMLS-K-GIRPTVVTYHTLFLGLFEVHQVEHALK-LFDEMRR 396 (570)
Q Consensus 341 ~~~~~~------------~~~~~A~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 396 (570)
..++.. |..++..+++..-.. . .+...+.-|..|-.-+...|++..|-. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 433333 334444455433221 1 011112224444444556777765544 4455443
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.42 E-value=7.1 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=17.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914 297 DTSTYNTLIDGYCLTGKIDRARELFV 322 (570)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (570)
+......+...|.+.+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55566667777777777777766553
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.63 E-value=4.4 Score=30.64 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 470 MADVVTYNIMIHGLCNDGQM---DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD 542 (570)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 542 (570)
.|+..+--.+.+++.++.+. .+++.+++.....+-.-.......+..++.+.|++++|+++.+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 46666666777888877644 457777777776432123445566777888888888888888888864 565
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.28 E-value=5.2 Score=31.20 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhh
Q 038914 444 LIDGLCKHGRLEIAWELFSSLP 465 (570)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~ 465 (570)
+..+|.+.+++++|+.+++.+.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4455555555555555555543
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.11 E-value=9.5 Score=33.68 Aligned_cols=173 Identities=12% Similarity=0.116 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHH----HHHHHHhcCCCCCc
Q 038914 77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAA----LFTKLRVFGCEPDV 152 (570)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~ 152 (570)
.+.++..-|.+++++++|++++...... +. +.|+...|.. +.+-+.+.+.+++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~---------------ll-------~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALS---------------FL-------KAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH-------HTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HH-------HCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 3445556677788888888886554321 11 1123333333 34444455667777
Q ss_pred chHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914 153 FTYNTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY 231 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 231 (570)
.....++..+......+ .=.++++.+.+.....|.....|+..+..+...|.+.|++.+|+.-|-... ..+...+
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~ 168 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKY 168 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHH
Confidence 77777777665533211 123333333322111111123467788888889999999888887764211 1134555
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914 232 TSLICGFCYA---NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMI 290 (570)
Q Consensus 232 ~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 290 (570)
..++.-+... |...++- ... ...+--|.-.|+...|..+++...
T Consensus 169 a~~l~~w~~~~~~~~~~e~d--------------lf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVA--------------EFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHH--------------HHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHH--------------HHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5555444433 3322211 111 111223455678888888777654
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.77 E-value=1.6 Score=32.93 Aligned_cols=61 Identities=7% Similarity=-0.101 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI 115 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (570)
..+...++.+++.+.+..| .......+.++.++.+.|+|++|+++.+.+++. .|+......
T Consensus 55 ~~di~~GI~LLe~l~~~~~-~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA~~ 115 (144)
T 1y8m_A 55 VNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 3356789999999998877 456778889999999999999999999999998 776654333
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.66 E-value=1 Score=33.57 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038914 53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNIL 116 (570)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (570)
.+...++.+++.+.+.+| ......++-++.++.+.|++++|+++.+.+++. .|+......+
T Consensus 57 ~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~L 117 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 356789999999998776 445788899999999999999999999999987 7776544443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.12 E-value=3.7 Score=28.73 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914 456 IAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501 (570)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (570)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555544443
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.41 E-value=18 Score=33.34 Aligned_cols=172 Identities=12% Similarity=-0.003 Sum_probs=99.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH---hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNST-GLFPDL---YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD 151 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (570)
.+...++..|.+.|+.++..+++...... +..+-. .....++..+.... +..+.-.++..+.++.. ..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~------~~~~~~~~~~~~~~~~a-~~~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD------AGTGIEVQLCKDCIEWA-KQE 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHH-HHH
Confidence 34577899999999999999988876433 111222 23445566665543 34444455555444321 112
Q ss_pred cchH------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C
Q 038914 152 VFTY------NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE--N 223 (570)
Q Consensus 152 ~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~ 223 (570)
..+| ..++..|...|++.+|..++.++.+.-...+. ..--...+..-+..|...+++.++...+...... .
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 2233 25788888999999998888888764211000 0011345666677788888888888888766532 1
Q ss_pred CCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHH
Q 038914 224 INPNAVTYTSL----ICGFC-YANDWNEAKHLFIEMM 255 (570)
Q Consensus 224 ~~~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~ 255 (570)
+.+++..-..+ ...+. ..++|..|...|-+..
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22233222211 23345 6778888777765543
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.00 E-value=7 Score=27.36 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038914 384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLI 445 (570)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 445 (570)
.=+..+-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.+.... .....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33445555555555666666666666666666666766766666665432 22233454443
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.38 E-value=37 Score=33.54 Aligned_cols=44 Identities=7% Similarity=-0.105 Sum_probs=22.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccccc
Q 038914 516 LGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNS 562 (570)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 562 (570)
..+...|....|...+..+... .+......+.....+.|..+.+
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHH
Confidence 4455667777777666666542 2233333444444445554433
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.50 E-value=13 Score=27.76 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 389 KLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 430 (570)
+-++.+...++.|++.+....+.+|.+.+++..|.++|+-+.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.12 E-value=12 Score=35.19 Aligned_cols=63 Identities=11% Similarity=0.001 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 194 VTYTTIIDGLCKKGFVDKAKELFLKMKDE--NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
.+...++..|.+.|++++|.+.|.++... +...-...+..+++.+...++|..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46677888888888888888888887764 2222355667777778888888888877777643
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.97 E-value=23 Score=30.23 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=28.7
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914 378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL 432 (570)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 432 (570)
..+.|+.++++.....-++.. +.|...-..+++.+|-.|++++|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555444443 444555555555555556666665555555544
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.86 E-value=7.2 Score=37.10 Aligned_cols=68 Identities=9% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914 75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF 146 (570)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (570)
...++.+++.|...+.++.|..+..+.. .|.. ..-......+...|..+..+++|.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567888888888999999999988875 3322 223334445555566667778888888888887765
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.79 E-value=32 Score=31.64 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914 264 VTFTVIMDELCKNGKMDGASRLLELM 289 (570)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 289 (570)
.+...+...|.+.|+.++...++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666666666666554
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.46 E-value=14 Score=27.46 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914 421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG 482 (570)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (570)
+..+-++.+...+.-|++.+..+.+.+|.+.+++..|.++|+-+..+ ..+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34445555555556666666666666666666666666666665543 22334445555543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.21 E-value=29 Score=30.87 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=45.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID 411 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (570)
++.....+...|.+.+++.+|...|- . |-.+....+..++.-+...+.. ...+..+...++.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~--------------~e~dlfiaRaVL~ 196 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDES--------------HTAPLYCARAVLP 196 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCG--------------GGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHH
Confidence 66677778888888888888877762 2 2222334555554443333221 1223333333443
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 038914 412 GLCKNGYIVKAVELFRTLR 430 (570)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~ 430 (570)
|...++...|..+++...
T Consensus 197 -yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 -YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHhCCHHHHHHHHHHHH
Confidence 556678888887776654
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.46 E-value=31 Score=30.71 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=28.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914 400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH 451 (570)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (570)
.-++.....+...|.+.+++.+|...|- .+..++...+..++.-+...
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 4466677777788888888888877762 23233335555444444333
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.72 E-value=18 Score=33.95 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhh--HH
Q 038914 265 TFTVIMDELCKNGKMDGASRLLELMILRG--VKPDTSTYNTLIDGYCLTGKIDRARELFVSMES---NGCMHDVVS--YS 337 (570)
Q Consensus 265 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 337 (570)
+...++..|.+.|++++|.+.+.++...- ...-...+...++.+...+++..+...+.++.. .+..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666666666666666666665531 122234555566666667777776666666533 121111111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038914 338 ILINGYCKTKDVEEGLNLYRKMLS 361 (570)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~ 361 (570)
..+..+...+++..|-..|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456777777777766554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.59 E-value=14 Score=25.83 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF 496 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (570)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+..- .||...|..|. -.+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 355666666665554431 22222222334556666666666655543 45555554332 23455555555555
Q ss_pred HHHHHCC
Q 038914 497 LDMEAKG 503 (570)
Q Consensus 497 ~~~~~~~ 503 (570)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 4554443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.92 E-value=61 Score=32.05 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=23.6
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 379 FEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429 (570)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 429 (570)
.+.|+++.|...|..|.... .........+..++...|+.++|..+|..+
T Consensus 296 lr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555543321 112222333444455555555555555554
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.50 E-value=28 Score=28.16 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038914 206 KGFVDKAKELFLKMKDENINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP 261 (570)
Q Consensus 206 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 261 (570)
.+....+.++|..|...|+-- -...|......+-..|++.+|..+|+.-++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444668888888887776543 34566777777778888888888888888776666
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.92 E-value=13 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF 496 (570)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (570)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+..- .||...|..| +-.+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 355666666665555431 22222222334556666666666555443 4555555433 234556656555555
Q ss_pred HHHHHCC
Q 038914 497 LDMEAKG 503 (570)
Q Consensus 497 ~~~~~~~ 503 (570)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.70 E-value=15 Score=28.17 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 110 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 110 (570)
+++..+|..+...+-......-|...+..+-..|++++|.++|+..++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4689999999988776777888899999999999999999999999999777743
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.53 E-value=46 Score=27.03 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038914 436 LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLM 515 (570)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (570)
++..+-...+.++...|+.+ +...+..+.+ .++..+-...+.++...|+. ++...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 44444444445555555432 2333333332 34444444555555555543 34444444443 34555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914 516 LGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557 (570)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 557 (570)
.++.+.|. .++...+.++.+. ++..+-.....++.+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 55555554 4455555555532 44555555555555443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.38 E-value=51 Score=26.71 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914 451 HGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506 (570)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (570)
.++...+..+|..|...|+--.. ..|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33466777777777776654433 456666666777777777777777777766666
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.57 E-value=20 Score=27.97 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 110 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 110 (570)
+++..+|..+...+-......-|...+..+-..|++.+|.++|+..++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4688899999988776677788889999999999999999999999999877754
No 277
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=59.23 E-value=69 Score=25.83 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=45.5
Q ss_pred CHHhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914 74 PVTSFNILFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE 149 (570)
Q Consensus 74 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (570)
+.+.++.+++++ .|-.+.+.|+-++-+|+..| .|....-..++.+....| +....-...|...++.....|.+
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG--lAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG--LGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG--GGCHHHHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhCCC
Confidence 334455566665 45689999999999999998 665555555555555554 33333345566666666666644
No 278
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=58.67 E-value=73 Score=25.92 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCHHhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914 73 PPVTSFNILFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE 149 (570)
Q Consensus 73 ~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (570)
.+...++.+++++ .|-.+++.|+-++-+|++.|-.|....-..++.+.-..| +....-...|...++.....|.+
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG--lAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG--LADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG--GGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445666667666 456899999999999999987776655555666655554 33444456666677776666754
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.65 E-value=28 Score=28.77 Aligned_cols=53 Identities=4% Similarity=0.167 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 038914 56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP 108 (570)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 108 (570)
+++..+|..+...+-......-|...+..+-..|++++|.++|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 57778888888877766777778888999999999999999999999887676
No 280
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.50 E-value=83 Score=25.30 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=42.0
Q ss_pred HhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcC
Q 038914 76 TSFNILFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFG 147 (570)
Q Consensus 76 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (570)
+.++.+++++ .|-.+.+.|+-++-+|++.|-.|....-..++.+.-..| +....-...|...++.....|
T Consensus 5 d~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG--lAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 5 DRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG--NADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG--GGCTTHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHC
Confidence 3444555555 456899999999999999987775555555555554444 222333344444444444444
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.90 E-value=1.3e+02 Score=27.14 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCCc
Q 038914 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ--VEHALKLFDEMRRNHVAA 401 (570)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 401 (570)
...++.-|...++.++|...++++....+. .......+..++-+.++ .+....++..+...++-.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 455667777788888888888877532111 11222223333333222 345666666666655433
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.74 E-value=1.4e+02 Score=26.40 Aligned_cols=71 Identities=7% Similarity=-0.088 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCc
Q 038914 488 QMDKAHGLFLDMEAKGLEPNFV--IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLVKNEI 558 (570)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 558 (570)
+..+.+++-.-+..-.+.|... ++..-+....+.+++..|..+.+++++.+-.++ ..-...++..+.+.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMAS 258 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Confidence 3344555555555555666433 445666777888888888888888887653232 2334455555555443
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=47.82 E-value=69 Score=22.40 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914 381 VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWEL 460 (570)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (570)
....++|..+-+-+...+. ...+-..-+..+...|++++|..+.+... .||...|.+| +-.+.|-.+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 3456777777766665542 22222233345667888888877765433 6777777666 44678888888777
Q ss_pred HHhhhhCCCCCChhhH
Q 038914 461 FSSLPRVGLMADVVTY 476 (570)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (570)
+..+...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776655 3443333
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=46.68 E-value=72 Score=22.34 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914 381 VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWEL 460 (570)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (570)
....++|..+-+-+...+. ...+-..-+..+...|++++|..+.+... .||...|.+| +-.+.|-.+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 4456777777777666542 22222233345677888888887775443 6777777766 44677888887777
Q ss_pred HHhhhhCCCCCChhhH
Q 038914 461 FSSLPRVGLMADVVTY 476 (570)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (570)
+..+...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776655 3443333
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.47 E-value=1.7e+02 Score=30.81 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccC
Q 038914 509 VIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDA----STLSIVVDLLVKNE 557 (570)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 557 (570)
..|..++..+-+.+-++.+.++.+.+++.--..|. ..+..++++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788899999999999999999999864222232 25556666655443
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.38 E-value=1.1e+02 Score=23.75 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 038914 205 KKGFVDKAKELFLKMKDENINP--NAVTYTSLIC-G-----FCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 205 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 256 (570)
..|++-+|-++++.+-.....+ ....|..||. . ..+.|++..|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477888888887777654344 3445555555 2 2345677777777666544
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.43 E-value=1.5e+02 Score=25.05 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=7.2
Q ss_pred HHHhcCChHHHHHHH
Q 038914 84 CLAKTKHYDTVLSLF 98 (570)
Q Consensus 84 ~~~~~g~~~~A~~~~ 98 (570)
...+.|+.+....++
T Consensus 11 ~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 344556654444433
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.02 E-value=1.5e+02 Score=24.75 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914 340 INGYCKTKDVEEGLNLYRKMLSK--GIRP----TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL 413 (570)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (570)
+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34455556666666665554431 1111 111112222222222223333344444422 33455566666777
Q ss_pred HhcCCHHHHHHHHHHH
Q 038914 414 CKNGYIVKAVELFRTL 429 (570)
Q Consensus 414 ~~~~~~~~a~~~~~~~ 429 (570)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7788888887777554
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.22 E-value=1.2e+02 Score=23.18 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914 490 DKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS 544 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 544 (570)
+++..+|..|..+|+--. ...|......+...|++++|.++++.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 346777777777665443 4455666667777777777777777777666566433
No 290
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.08 E-value=1.5e+02 Score=23.99 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=28.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCC
Q 038914 275 KNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK-----IDRARELFVSMESNGCM 330 (570)
Q Consensus 275 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 330 (570)
+-.+++.|+-++.+|++.| .|....-..++.+.-..|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3466777777777777776 4444444444444444443 22334444444444533
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.94 E-value=1.7e+02 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=16.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 332 DVVSYSILINGYCKTKDVEEGLNLYRKML 360 (570)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (570)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444445555666666666666665443
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.39 E-value=1.6e+02 Score=23.78 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=17.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038914 275 KNGKMDGASRLLELMILRGVKPDTSTYNTLIDG 307 (570)
Q Consensus 275 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (570)
+-.+++.|+-++.+|++.|-.|....-..++.+
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345666666666666666544443333333333
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.88 E-value=1.4e+02 Score=23.20 Aligned_cols=51 Identities=6% Similarity=0.085 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 492 AHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD 542 (570)
Q Consensus 492 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 542 (570)
+..+|..|..+|+--. ...|...+..+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4444555554443322 33344444444555555555555555554444443
No 294
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.33 E-value=84 Score=30.01 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=59.7
Q ss_pred HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914 40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119 (570)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (570)
++....|........++.|...|..+....| .+...|+.++......|+.-+|+-.|-+.+... .|-......+...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVP--SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHH
Confidence 4444455444445678899999999999999 899999999999999999999998888887653 4555555555544
Q ss_pred HH
Q 038914 120 FL 121 (570)
Q Consensus 120 ~~ 121 (570)
+.
T Consensus 230 f~ 231 (497)
T 1ya0_A 230 LS 231 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.59 E-value=1.5e+02 Score=22.92 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 038914 483 LCNDGQMDKAHGLFLDMEAKGLEP--NFVIFNTLML------GFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.+.|++=+|-++|+..-...-.+ +...|..|+. ...+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344578888888887776653334 3445555555 22357888888888888763
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.47 E-value=1.9e+02 Score=23.91 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 490 DKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD 542 (570)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 542 (570)
+++..+|..|..+|+--. ...|......+...|++++|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455566666666655433 34455666666666777777777766665555554
No 297
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=35.18 E-value=1.3e+02 Score=21.82 Aligned_cols=76 Identities=13% Similarity=0.005 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914 453 RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA-KGLEPNFVIFNTLMLGFIRNNETSKVIELL 531 (570)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (570)
++.+|+.-+++.... ++|......++..+-.. ++.++++.+...+ .|+ .+.++...+....+.|-.++. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 456677777766553 34444555555544332 3445555444433 344 233344444444554544333 344
Q ss_pred HHHH
Q 038914 532 HRMD 535 (570)
Q Consensus 532 ~~~~ 535 (570)
.+|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.12 E-value=3.3e+02 Score=28.74 Aligned_cols=108 Identities=10% Similarity=0.025 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------
Q 038914 199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ------------------ 260 (570)
Q Consensus 199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 260 (570)
++..|...|.++-|.++...+ +.++..--.+..+|...|++++|...|+++-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 455555666665554433222 12333333455666666666666666655321 110
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 038914 261 -----PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTG 312 (570)
Q Consensus 261 -----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 312 (570)
....-|..++..+-+.+.++.+.++-+.+++.--..|. ..+..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01225778899999999999999999888875322233 25666666665543
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.88 E-value=1.7e+02 Score=25.83 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCc
Q 038914 493 HGLFLDMEAKGLEPNFV--IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAST---LSIVVDLLVKNEI 558 (570)
Q Consensus 493 ~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~ 558 (570)
+++-.-+..-.+.|... ++..-+....+.+++..|..+.+++++.+ |+... ...++..+.+.+.
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELG--PKPEVAQQTRKILSACEKNPT 249 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCC
Confidence 34444444444555433 44556677788888888888888888764 44333 4455555555443
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.67 E-value=80 Score=24.54 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcC
Q 038914 55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST--GLFPDLYAYNILINCFLQNG 124 (570)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 124 (570)
.+.++..+...++... -....--..++..+...+..-.|.++++.+.+. +...+..|.-..+..+...|
T Consensus 13 ~~~~~~~~~~~L~~~g-~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 13 YDVLLERFKKILRQGG-LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 4566666666665444 233445566777888888889999999999887 66677888777888888877
No 301
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.07 E-value=2e+02 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914 276 NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL 310 (570)
Q Consensus 276 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (570)
-.+++.|+-++.+|++.|-.|....-..++.+.-.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 45666666666666666654444433433333333
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.76 E-value=2.2e+02 Score=23.91 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=10.0
Q ss_pred HHHHHHhcCChhHHHHHH
Q 038914 269 IMDELCKNGKMDGASRLL 286 (570)
Q Consensus 269 l~~~~~~~g~~~~a~~~~ 286 (570)
.+...+..|+.+....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444556677765544444
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.71 E-value=3.1e+02 Score=25.63 Aligned_cols=29 Identities=17% Similarity=-0.027 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914 226 PNAVTYTSLICGFCYANDWNEAKHLFIEMMD 256 (570)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 256 (570)
.+......++.. ..|+..+++.+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 455555555544 46777777777776654
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.58 E-value=1.7e+02 Score=22.23 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333444445555555544433333333333344444444
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.17 E-value=2.1e+02 Score=23.20 Aligned_cols=18 Identities=6% Similarity=-0.046 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhHHHHHH
Q 038914 158 LINGLCRTGHTIVALNLF 175 (570)
Q Consensus 158 l~~~~~~~g~~~~A~~~~ 175 (570)
.+...+..|+.+-+.-++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 344445566664443333
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.96 E-value=1.7e+02 Score=22.03 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=18.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 236 CGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 236 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444445555555554443334444444444444444
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.94 E-value=1.1e+02 Score=20.00 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914 498 DMEAKGLEPNFVIFNTLMLGFIRNN-ETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL 560 (570)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 560 (570)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.|.+.|...
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 35566777766543 3444554443 45567788888877666677888888888988888765
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.87 E-value=1.6e+02 Score=21.70 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914 441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ--MDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518 (570)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (570)
...++.-|...|+.++|.+.++++..-.+ ....+...+..++-+.++ .+....++..+...|+-+...... +
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~----G- 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR----G- 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH----H-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH----H-
Confidence 46678888899999999999998753100 111233334444444332 345666777776655443322222 2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCccc
Q 038914 519 IRNNETSKVIELLHRMDMRNVMPDAS-TLSIVVDLLVKNEISL 560 (570)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 560 (570)
+......+.++.- + -|++. .+..++..+...|...
T Consensus 84 -----f~~v~~~l~Dl~l-D-iP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 84 -----YERIYNEIPDINL-D-VPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp -----HHHHHHHHHHHHH-H-STTHHHHHHHHHHHHHHTTCSC
T ss_pred -----HHHHHhhChHhhc-C-ccchHHHHHHHHHHHHHCCCCC
Confidence 2333444444442 2 35543 4455555555555544
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.73 E-value=1.6e+02 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 337 SILINGYCKTKDVEEGLNLYRKML 360 (570)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~ 360 (570)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344455555556666665555553
No 310
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.50 E-value=1.4e+02 Score=20.76 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 038914 491 KAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-----MRNVMPDASTLSIV 549 (570)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~l 549 (570)
.|.++.+++...|+.|+..+...++..|...+- + +.++.++.. ..|..|+...+..+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355566666666777777777777666665543 1 333222222 34666666655544
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.15 E-value=75 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLN 102 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (570)
+...+..+.+.|+|++|++..+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4466778889999999988777665
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.99 E-value=3.1e+02 Score=24.72 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 038914 300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKD--VEEGLNLYRKML 360 (570)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~ 360 (570)
....++.-|...++.++|...++.+..... .......++......++ -+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 456677788888899888888887643211 22333344443333332 233444555444
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.97 E-value=3.5e+02 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=15.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 038914 345 KTKDVEEGLNLYRKMLSKGIRPT 367 (570)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~ 367 (570)
+.++.+.|+.++.+|.+.|..|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHH
Confidence 34667777777777777665543
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.71 E-value=3.8e+02 Score=25.66 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh--hh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914 153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT--VT-YTTIIDGLCKKGFVDKAKELFLKMKDE 222 (570)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 222 (570)
..+|.+++.|...+.++.|..+..+..-... ..++. .. +..++..+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~-----~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHT-----DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT-----TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcc-----cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3577788888888888888888888742110 01111 11 233456667778888888888777654
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.62 E-value=3.6e+02 Score=25.36 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914 215 LFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV 294 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 294 (570)
.+.-....|++--...|..-.+.+...|++++|..+-....+ |+-.+..|.+.+-.+=...|+..-.+.+|..+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g- 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG- 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914 295 KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKM 359 (570)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (570)
..+..--..+++.-...|+.+-..+++.+ +--++..=+.-+.+..+..-|+.+|.+.
T Consensus 426 ~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 426 QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 316
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=29.41 E-value=98 Score=18.78 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 038914 52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVL 95 (570)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (570)
....++|..+.++...... .....-...+..+..+|+|++|+
T Consensus 19 ~HcH~EA~tIA~~L~~~~~--~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 19 HHCHQEAASIADWLAQEEC--MAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTCHHHHHHHHHHHHTSST--THHHHHHHHHHHHHHC-------
T ss_pred chHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHccchHhHhh
Confidence 3467899999998876543 12222223344677889998875
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.72 E-value=1.3e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 337 SILINGYCKTKDVEEGLNLYRKML 360 (570)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~ 360 (570)
..++.-|...++.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555566666666555553
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.49 E-value=2.9e+02 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914 301 YNTLIDGYCLTGKIDRARELFVSME 325 (570)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (570)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567778888899998888887774
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.90 E-value=3e+02 Score=23.50 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=3.5
Q ss_pred HhcCChhH
Q 038914 163 CRTGHTIV 170 (570)
Q Consensus 163 ~~~g~~~~ 170 (570)
+..|+.+-
T Consensus 70 ~~~g~~~~ 77 (285)
T 3kea_A 70 ATLEDTKI 77 (285)
T ss_dssp TTSSSCHH
T ss_pred HHcCCHHH
Confidence 34455433
No 320
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.88 E-value=4.8e+02 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038914 195 TYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY 240 (570)
Q Consensus 195 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (570)
.|. ++-.|.++|.+++|.++..+.... +.--...+...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 443 567788999999999999877543 11112345555555553
No 321
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.81 E-value=2.3e+02 Score=22.26 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=18.1
Q ss_pred CCCCCHHHHH--HHHHHHHccCcccccchhhh
Q 038914 538 NVMPDASTLS--IVVDLLVKNEISLNSIPQFK 567 (570)
Q Consensus 538 ~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~ 567 (570)
+.-|..-+|. .....+...|..++....|.
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~ 232 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFE 232 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence 4567665553 33344667788877766654
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.73 E-value=1.6e+02 Score=22.57 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 038914 155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF--VDKAKELFLKMKDENIN 225 (570)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 225 (570)
...++.-|...|+.++|...++++.... .....+...+..++-+.+. .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-------f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4456777777888888888888874211 1112233333334443222 34556666666655443
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.63 E-value=1.8e+02 Score=22.15 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=42.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccc
Q 038914 498 DMEAKGLEPNFVIFNTLMLGFIRNN-ETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLN 561 (570)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 561 (570)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|....++.|.+.|....
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 35566777665432 2334444444 556688888888877666678888888888888887653
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.61 E-value=1.9e+02 Score=22.42 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=26.1
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcC
Q 038914 257 QGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR--GVKPDTSTYNTLIDGYCLTG 312 (570)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 312 (570)
.|...+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444433 2233444445555555666666666554 43444444444444444444
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.33 E-value=1.9e+02 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 243 DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443333333333334444433
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.00 E-value=1.9e+02 Score=22.70 Aligned_cols=187 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHH
Q 038914 159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT--YTSLIC 236 (570)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 236 (570)
+...+..|+.+....++..-...- -..+...++.|..++.... .++++.+.+.|..++... -.+.+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~------~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQV------DEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYL 77 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCT------TCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCC------CCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914 237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDR 316 (570)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (570)
..+..|+.+-+..+++..... +......-...+...+..|+.+-+..+++.-...--..+..-.+.+..+.........
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC-TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HHHHcCCHHHHHHHHhccCcc-cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Q ss_pred HHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHH
Q 038914 317 ARELFVSMESNGCMHDVVSYS--ILINGYCKTKDVEEGLNLYR 357 (570)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~ 357 (570)
-.++++.+.+.|..++..... ..+......|+.+-+.-+++
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.75 E-value=1.6e+02 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 244 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444444433333333333333344333
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.29 E-value=1.5e+02 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=13.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914 202 GLCKKGFVDKAKELFLKMKDENINPN 227 (570)
Q Consensus 202 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 227 (570)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666665555444333
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.93 E-value=3.7e+02 Score=23.57 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 038914 301 YNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV--EEGLNLYRKML 360 (570)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~ 360 (570)
...++.-|...|+.++|...++++.... ........++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567778888888888888888764321 1222333344444444432 34445555554
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.75 E-value=1.6e+02 Score=24.55 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHH--hcCChhHHHHHHHHHH
Q 038914 235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVV-------TFTVIMDELC--KNGKMDGASRLLELMI 290 (570)
Q Consensus 235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~a~~~~~~~~ 290 (570)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344557788887777777666655544422 2233333322 4577666666665543
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.53 E-value=3.8e+02 Score=23.52 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 038914 196 YTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW--NEAKHLFIEMM 255 (570)
Q Consensus 196 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~ 255 (570)
...++.-|...|+.++|...++++..... .......++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45678888889999999999988643221 222233344444444432 23444555554
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.43 E-value=2e+02 Score=21.82 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914 243 DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277 (570)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (570)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554443334444444444444444
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.72 E-value=2.5e+02 Score=21.12 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=30.7
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038914 254 MMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312 (570)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (570)
+.+.|...+.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44455554432 23344445555556667777777766554445555444455554444
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.34 E-value=2.4e+02 Score=21.21 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914 76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG 124 (570)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (570)
.--..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 19 ~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33445556666666 7789999999998877778888888888888777
No 335
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.05 E-value=3.1e+02 Score=22.09 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=7.6
Q ss_pred HHhcCChhHHHHHHH
Q 038914 162 LCRTGHTIVALNLFE 176 (570)
Q Consensus 162 ~~~~g~~~~A~~~~~ 176 (570)
.++.|+.+....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 345666655444443
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.40 E-value=3.1e+02 Score=21.81 Aligned_cols=141 Identities=15% Similarity=0.077 Sum_probs=63.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914 151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT 230 (570)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 230 (570)
+..+-...+..+.+.|+. .+...+..+... ++...-...+.++...+..+ +...+..+.. .++..+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---------~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~v 97 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALKD---------EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWV 97 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---------SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---------CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHH
Confidence 444444455555555553 333444444331 34444455555555555432 3333333332 235555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914 231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL 310 (570)
Q Consensus 231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (570)
-...+.++...++.+ +...+..+.. .++...-...+.++...|..+ +...+..+.. .++..+-...+.++..
T Consensus 98 r~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 98 RQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp HHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 555555555555533 2333333332 234444455555555555432 3333333332 2344444444455544
Q ss_pred cCC
Q 038914 311 TGK 313 (570)
Q Consensus 311 ~~~ 313 (570)
.+.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 444
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.39 E-value=2.7e+02 Score=21.08 Aligned_cols=59 Identities=7% Similarity=0.082 Sum_probs=32.2
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914 254 MMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK 313 (570)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (570)
+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4455555433 2334455555556667777777777766555555555555555555543
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.16 E-value=1.1e+02 Score=18.94 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 038914 264 VTFTVIMDE 272 (570)
Q Consensus 264 ~~~~~l~~~ 272 (570)
.+|...++.
T Consensus 22 wsweqamr~ 30 (59)
T 2b7e_A 22 WSFSRIISE 30 (59)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 344443333
No 339
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.14 E-value=3.8e+02 Score=22.74 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 038914 490 DKAHGLFLDMEA---KGLEPNFVIFNTLML-----GFIRNNETSKVIELLHRMDM 536 (570)
Q Consensus 490 ~~A~~~~~~~~~---~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 536 (570)
+.|...|+.+.+ ..++|+.++...|+- -|--.++.++|..+.++..+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566665543 247887666555542 33457999999988877753
No 340
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.86 E-value=3.1e+02 Score=21.58 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=53.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----------------CHhhH
Q 038914 50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP----------------DLYAY 113 (570)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~ 113 (570)
.-.|.+..++-++... ....+..--.-++-+.+++..|+..++.++...+.. |..-+
T Consensus 44 yyngEY~R~Lf~L~~l-------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 44 YLNGEYTRALFHLHKL-------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp HHTTCHHHHHHHHHTC-------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred hhcchHhHHHHHHHhc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 3467888887766544 444555555668889999999999999999654431 23334
Q ss_pred HHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914 114 NILINCFLQNGSSLCVESRIMEAAALFTKLR 144 (570)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (570)
..++.-... +.|..++|+..+..--
T Consensus 117 y~l~a~llt------q~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 117 ESLLGDLCT------LSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHH------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HhcCHHHhhhHhhhhc
Confidence 444443333 2468888888886543
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.25 E-value=1.5e+02 Score=21.83 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccc
Q 038914 512 NTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLN 561 (570)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 561 (570)
..++..+...+..-.|.++++.+.+.+...+..|....++.|.+.|...+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
No 342
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.03 E-value=1e+02 Score=28.97 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh
Q 038914 78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFP--DLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRV 145 (570)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (570)
.+.+...|.+.|+..-+..++..+...+..| +...-...+.-....|..+..++++.+|.+.+.++..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4567789999999999999999887776532 3333344444455555566666777777777766554
Done!