BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038916
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 132 QLEVDLRGVEAMRSELLKVQADIK-ELTAVRQELTDLQ-QVPALKAEIENVKQELQRARA 189
+LEV L+ E R EL K++ ++ E + + +++ +LQ Q+ LKA++ ++ELQ A A
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Query: 190 AIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231
+E + + + +E + + +LE +A +EK
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 45 EMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYE 104
E+ E F G LP P + I L+ D L ++L AQ+
Sbjct: 446 EINEWIFKAG---LPSYAPQPTSNAFKVIDKQINQLVTDELTL--------EQLPTAQWT 494
Query: 105 LQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKEL 157
L +H+ ++ +D D Q DK+ L A LL V+AD KE+
Sbjct: 495 LHEWLHFINNLPVDLDHQRMVNLDKAFDLTNSSNAEIAHAWYLLSVRADYKEV 547
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 175 AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE 218
E++NV++E+ ++FDK GY E E V K I + E
Sbjct: 392 GELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEE 435
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 108 MVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL 167
++H ++FR K +Q R + + +Q+ D VEA A +K V E++DL
Sbjct: 205 IIHRRNTFRASKIMQARALSNPKIQVVWDSEVVEAYGGAGGGPLAGVKVKNLVTGEVSDL 264
Query: 168 Q 168
Q
Sbjct: 265 Q 265
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 151 QADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV-ME 209
Q D EL +EL ++ A + V+ E+ + A++FDK GY E E V M+
Sbjct: 375 QLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMD 434
Query: 210 KKLISMARELEK 221
+K + LE+
Sbjct: 435 RKTLLSRERLER 446
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 151 QADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV-ME 209
Q D EL +EL ++ A + V+ E+ + A++FDK GY E E V M+
Sbjct: 374 QLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMD 433
Query: 210 KKLISMARELEK 221
+K + LE+
Sbjct: 434 RKTLLSRERLER 445
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 151 QADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV-ME 209
Q D EL +EL ++ A + V+ E+ + A++FDK GY E E V M+
Sbjct: 351 QLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMD 410
Query: 210 KKLISMARELEK 221
+K + LE+
Sbjct: 411 RKTLLSRERLER 422
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 151 QADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEK 210
Q D EL +EL + A + V+ E+ + A++FDK GY E E V
Sbjct: 351 QLDRAELIEGYKELXRXKGQDASXLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAXD 410
Query: 211 KLISMARE 218
+ ++RE
Sbjct: 411 RKTLLSRE 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,369,589
Number of Sequences: 62578
Number of extensions: 386818
Number of successful extensions: 1067
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 44
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)