Query 038916
Match_columns 300
No_of_seqs 112 out of 123
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 97.5 0.058 1.3E-06 53.6 24.7 16 66-81 52-67 (428)
2 PRK09039 hypothetical protein; 97.4 0.008 1.7E-07 58.7 16.5 73 155-227 123-200 (343)
3 PRK11637 AmiB activator; Provi 97.3 0.14 3E-06 51.0 24.2 49 64-112 43-91 (428)
4 PF07888 CALCOCO1: Calcium bin 96.9 0.16 3.5E-06 52.8 20.7 46 64-109 139-184 (546)
5 COG4942 Membrane-bound metallo 96.9 0.29 6.2E-06 49.5 21.3 54 171-227 195-248 (420)
6 PF00038 Filament: Intermediat 96.7 0.35 7.6E-06 45.5 20.0 88 90-181 48-137 (312)
7 TIGR02168 SMC_prok_B chromosom 96.7 0.33 7.1E-06 52.3 21.5 12 66-77 703-714 (1179)
8 TIGR02169 SMC_prok_A chromosom 96.6 0.32 6.8E-06 52.8 21.3 44 66-109 292-335 (1164)
9 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.048 1E-06 46.2 10.9 88 145-234 3-90 (132)
10 TIGR02168 SMC_prok_B chromosom 96.4 0.6 1.3E-05 50.3 21.6 15 66-80 675-689 (1179)
11 KOG4807 F-actin binding protei 96.4 0.37 8E-06 48.7 18.3 166 65-230 353-539 (593)
12 PF04849 HAP1_N: HAP1 N-termin 96.3 0.32 7E-06 47.4 17.0 163 64-230 69-268 (306)
13 COG1579 Zn-ribbon protein, pos 96.3 0.35 7.5E-06 45.6 16.7 119 65-192 5-127 (239)
14 PF09726 Macoilin: Transmembra 96.2 0.13 2.7E-06 55.0 15.0 18 92-109 421-438 (697)
15 KOG1924 RhoA GTPase effector D 96.1 0.0058 1.3E-07 65.4 4.4 23 203-225 792-814 (1102)
16 PF08317 Spc7: Spc7 kinetochor 96.0 0.34 7.3E-06 46.8 15.4 106 126-233 182-292 (325)
17 PF07798 DUF1640: Protein of u 95.7 0.83 1.8E-05 40.5 15.8 21 80-100 31-51 (177)
18 COG4372 Uncharacterized protei 95.7 1.8 3.9E-05 43.8 19.4 88 71-165 105-192 (499)
19 PF08317 Spc7: Spc7 kinetochor 95.6 0.69 1.5E-05 44.7 16.1 59 173-231 207-265 (325)
20 KOG0933 Structural maintenance 95.6 0.47 1E-05 52.5 16.1 161 64-231 687-864 (1174)
21 PRK04863 mukB cell division pr 95.6 1 2.3E-05 52.0 19.6 141 87-227 856-1044(1486)
22 COG1196 Smc Chromosome segrega 95.4 2.5 5.5E-05 47.4 21.4 59 170-228 858-916 (1163)
23 PF05701 WEMBL: Weak chloropla 95.4 2.4 5.2E-05 43.7 19.8 24 169-192 338-361 (522)
24 TIGR00606 rad50 rad50. This fa 95.3 0.81 1.8E-05 51.8 17.7 62 170-231 845-909 (1311)
25 PF12128 DUF3584: Protein of u 95.3 2 4.3E-05 48.5 20.3 67 167-233 468-534 (1201)
26 KOG0977 Nuclear envelope prote 95.1 2.3 4.9E-05 44.6 18.8 143 83-225 47-230 (546)
27 PF04111 APG6: Autophagy prote 95.0 0.31 6.7E-06 47.2 11.6 121 93-224 13-134 (314)
28 TIGR00606 rad50 rad50. This fa 95.0 1.4 3E-05 50.0 18.2 29 198-227 1017-1045(1311)
29 PRK02224 chromosome segregatio 94.9 2.3 5E-05 45.6 18.8 23 170-192 379-401 (880)
30 COG3524 KpsE Capsule polysacch 94.9 0.95 2.1E-05 44.5 14.2 83 140-237 225-308 (372)
31 TIGR02680 conserved hypothetic 94.9 4.2 9.2E-05 46.6 21.6 38 67-104 741-778 (1353)
32 KOG0999 Microtubule-associated 94.8 3.4 7.4E-05 43.6 18.8 133 93-228 54-212 (772)
33 PF10174 Cast: RIM-binding pro 94.8 1.5 3.3E-05 47.6 17.0 90 70-160 55-164 (775)
34 smart00787 Spc7 Spc7 kinetocho 94.7 2.1 4.6E-05 41.6 16.3 63 169-231 219-285 (312)
35 KOG0161 Myosin class II heavy 94.6 3.3 7.3E-05 49.0 20.2 31 170-200 1099-1129(1930)
36 PF09726 Macoilin: Transmembra 94.6 8 0.00017 41.7 23.5 82 170-259 589-677 (697)
37 PF06818 Fez1: Fez1; InterPro 94.6 1.4 3E-05 40.7 13.9 23 209-231 130-152 (202)
38 KOG0161 Myosin class II heavy 94.6 3.2 6.9E-05 49.2 19.9 113 123-235 1008-1129(1930)
39 PF07888 CALCOCO1: Calcium bin 94.6 5.9 0.00013 41.6 20.0 38 74-111 156-193 (546)
40 smart00787 Spc7 Spc7 kinetocho 94.6 3.3 7.2E-05 40.3 17.3 84 143-231 177-260 (312)
41 PF12128 DUF3584: Protein of u 94.3 6 0.00013 44.8 21.0 23 166-188 769-791 (1201)
42 COG1579 Zn-ribbon protein, pos 94.3 3.8 8.3E-05 38.7 16.5 53 143-197 101-153 (239)
43 TIGR01000 bacteriocin_acc bact 94.3 5.2 0.00011 40.2 18.6 62 170-231 238-312 (457)
44 PF05701 WEMBL: Weak chloropla 94.2 4.4 9.6E-05 41.8 18.3 71 92-162 126-196 (522)
45 PF06160 EzrA: Septation ring 94.2 2.4 5.2E-05 44.1 16.5 138 87-227 243-403 (560)
46 PHA02562 46 endonuclease subun 94.2 7.3 0.00016 39.4 20.4 7 64-70 154-160 (562)
47 PRK02224 chromosome segregatio 94.1 6.8 0.00015 42.1 20.2 19 208-226 347-365 (880)
48 KOG4809 Rab6 GTPase-interactin 94.1 4.3 9.3E-05 42.7 17.6 92 74-165 330-455 (654)
49 PF05622 HOOK: HOOK protein; 94.0 0.015 3.3E-07 61.5 0.0 140 88-227 238-415 (713)
50 TIGR03007 pepcterm_ChnLen poly 93.9 5.3 0.00011 40.1 17.9 38 196-233 341-378 (498)
51 PF10473 CENP-F_leu_zip: Leuci 93.9 4 8.7E-05 35.6 16.9 99 82-194 17-116 (140)
52 PRK03918 chromosome segregatio 93.9 9.9 0.00021 40.7 20.7 14 94-107 198-211 (880)
53 COG1196 Smc Chromosome segrega 93.8 9.1 0.0002 43.1 21.1 35 199-233 880-914 (1163)
54 PRK04778 septation ring format 93.7 3.4 7.3E-05 42.9 16.5 142 88-232 248-419 (569)
55 PRK04863 mukB cell division pr 93.7 7.3 0.00016 45.3 20.4 55 178-232 1063-1117(1486)
56 PF13514 AAA_27: AAA domain 93.7 8 0.00017 43.3 20.3 64 75-138 160-228 (1111)
57 KOG4807 F-actin binding protei 93.7 3.8 8.2E-05 41.7 15.9 88 64-165 385-476 (593)
58 PF10186 Atg14: UV radiation r 93.6 5.8 0.00013 36.5 17.1 24 169-192 85-108 (302)
59 COG4372 Uncharacterized protei 93.6 8.6 0.00019 39.1 18.2 78 143-226 156-233 (499)
60 PRK09039 hypothetical protein; 93.6 2.5 5.5E-05 41.4 14.6 99 92-190 42-152 (343)
61 PRK04778 septation ring format 93.5 7.8 0.00017 40.3 18.7 161 64-230 168-337 (569)
62 KOG0250 DNA repair protein RAD 93.5 7.4 0.00016 43.7 19.2 149 66-224 293-464 (1074)
63 PF00038 Filament: Intermediat 93.5 6.7 0.00015 36.9 20.4 46 64-109 50-95 (312)
64 PF10174 Cast: RIM-binding pro 93.5 13 0.00027 40.7 20.6 55 64-118 290-344 (775)
65 PF09789 DUF2353: Uncharacteri 93.4 2.7 5.9E-05 41.2 14.2 142 82-228 79-228 (319)
66 KOG0977 Nuclear envelope prote 93.3 2.9 6.3E-05 43.8 15.0 26 170-195 319-344 (546)
67 TIGR01843 type_I_hlyD type I s 93.2 8.3 0.00018 37.1 19.6 25 207-231 243-267 (423)
68 PF07111 HCR: Alpha helical co 93.2 10 0.00023 40.9 19.1 26 210-235 190-215 (739)
69 KOG0971 Microtubule-associated 93.1 2.8 6E-05 46.4 14.8 40 79-118 372-411 (1243)
70 COG1322 Predicted nuclease of 93.0 7 0.00015 40.1 17.0 65 168-237 131-196 (448)
71 KOG1029 Endocytic adaptor prot 92.9 13 0.00027 41.0 19.2 109 87-195 435-558 (1118)
72 TIGR03017 EpsF chain length de 92.8 8.1 0.00018 38.1 16.9 39 148-186 257-300 (444)
73 KOG1924 RhoA GTPase effector D 92.7 0.2 4.4E-06 54.1 5.8 15 151-165 798-812 (1102)
74 TIGR02680 conserved hypothetic 92.4 17 0.00037 41.9 20.8 20 212-231 923-942 (1353)
75 PHA02562 46 endonuclease subun 92.3 14 0.00031 37.4 20.3 23 143-165 304-326 (562)
76 KOG0249 LAR-interacting protei 92.1 3.8 8.2E-05 44.3 14.1 52 64-122 94-145 (916)
77 PF07111 HCR: Alpha helical co 92.0 17 0.00038 39.3 18.8 52 68-119 66-117 (739)
78 PRK15178 Vi polysaccharide exp 91.9 5.2 0.00011 40.9 14.4 109 133-256 281-397 (434)
79 KOG0996 Structural maintenance 91.9 18 0.0004 41.2 19.5 19 169-187 522-540 (1293)
80 PF14735 HAUS4: HAUS augmin-li 91.6 12 0.00026 35.2 17.3 76 154-229 153-228 (238)
81 KOG3478 Prefoldin subunit 6, K 91.4 5.9 0.00013 33.7 11.9 49 180-231 63-111 (120)
82 TIGR03007 pepcterm_ChnLen poly 91.4 12 0.00026 37.6 16.5 22 166-187 273-294 (498)
83 KOG4674 Uncharacterized conser 91.4 13 0.00028 44.1 18.3 96 67-165 737-832 (1822)
84 PF07798 DUF1640: Protein of u 91.4 8.6 0.00019 34.0 13.7 34 123-156 75-109 (177)
85 PF14662 CCDC155: Coiled-coil 91.3 12 0.00025 34.5 19.5 32 199-230 154-185 (193)
86 PF15619 Lebercilin: Ciliary p 91.3 11 0.00025 34.2 18.4 152 65-227 16-188 (194)
87 KOG0612 Rho-associated, coiled 91.3 18 0.00038 41.4 18.6 15 211-225 675-689 (1317)
88 PF12325 TMF_TATA_bd: TATA ele 91.2 2.9 6.3E-05 35.5 10.1 42 175-216 68-109 (120)
89 PRK11546 zraP zinc resistance 90.9 3.9 8.3E-05 35.9 10.8 58 172-229 58-115 (143)
90 PF09787 Golgin_A5: Golgin sub 90.9 20 0.00043 36.9 17.7 22 207-228 359-380 (511)
91 PRK10361 DNA recombination pro 90.8 18 0.00038 37.5 17.1 55 171-228 143-197 (475)
92 PF08826 DMPK_coil: DMPK coile 90.6 1.9 4.2E-05 32.6 7.6 55 132-188 5-59 (61)
93 TIGR01005 eps_transp_fam exopo 90.5 21 0.00045 38.1 18.0 26 85-110 197-222 (754)
94 PRK10884 SH3 domain-containing 90.5 1.5 3.2E-05 40.4 8.3 31 202-232 138-168 (206)
95 PF13514 AAA_27: AAA domain 90.3 26 0.00057 39.3 19.3 23 87-109 748-770 (1111)
96 PF08172 CASP_C: CASP C termin 90.1 7.3 0.00016 36.8 12.8 50 170-233 81-132 (248)
97 PF09486 HrpB7: Bacterial type 90.0 13 0.00029 33.0 17.2 105 124-230 36-148 (158)
98 COG4942 Membrane-bound metallo 89.9 25 0.00054 35.9 21.4 28 203-230 217-244 (420)
99 KOG0612 Rho-associated, coiled 89.8 24 0.00052 40.4 18.1 102 64-165 437-549 (1317)
100 KOG0979 Structural maintenance 89.5 28 0.00062 39.1 18.1 93 70-165 176-282 (1072)
101 TIGR01843 type_I_hlyD type I s 89.4 21 0.00045 34.4 20.6 60 170-229 212-272 (423)
102 PRK11546 zraP zinc resistance 89.4 0.71 1.5E-05 40.4 5.0 53 140-194 63-115 (143)
103 PF04626 DEC-1_C: Dec-1 protei 89.4 0.24 5.2E-06 42.3 2.0 28 244-273 75-102 (132)
104 KOG2129 Uncharacterized conser 89.3 29 0.00063 35.8 20.2 56 171-226 249-305 (552)
105 PF12592 DUF3763: Protein of u 89.2 2.3 4.9E-05 31.8 6.9 56 169-224 1-56 (57)
106 PF12004 DUF3498: Domain of un 88.9 0.12 2.7E-06 53.1 0.0 81 75-168 376-470 (495)
107 PRK09841 cryptic autophosphory 88.9 13 0.00028 39.7 15.1 72 147-229 313-389 (726)
108 PF12325 TMF_TATA_bd: TATA ele 88.8 14 0.0003 31.4 12.7 22 88-109 22-43 (120)
109 KOG0980 Actin-binding protein 88.8 44 0.00095 37.2 20.2 48 168-215 494-541 (980)
110 KOG0250 DNA repair protein RAD 88.7 28 0.0006 39.4 17.5 25 203-227 394-418 (1074)
111 PLN03229 acetyl-coenzyme A car 88.6 18 0.0004 39.4 15.7 91 64-165 458-564 (762)
112 TIGR01010 BexC_CtrB_KpsE polys 88.4 25 0.00054 34.0 16.4 84 140-232 216-300 (362)
113 TIGR01005 eps_transp_fam exopo 88.4 38 0.00083 36.1 19.9 33 199-231 365-397 (754)
114 PF13851 GAS: Growth-arrest sp 88.3 11 0.00023 34.4 12.2 56 166-221 84-139 (201)
115 KOG0995 Centromere-associated 88.3 24 0.00051 37.4 15.9 103 123-226 244-362 (581)
116 PF10168 Nup88: Nuclear pore c 88.2 25 0.00054 38.1 16.6 30 206-235 635-664 (717)
117 KOG1029 Endocytic adaptor prot 88.2 22 0.00048 39.2 15.9 79 144-222 436-536 (1118)
118 PF08826 DMPK_coil: DMPK coile 88.1 3.2 6.9E-05 31.4 7.2 45 179-224 15-60 (61)
119 KOG0976 Rho/Rac1-interacting s 88.1 40 0.00086 37.5 17.7 90 69-165 327-434 (1265)
120 KOG0995 Centromere-associated 88.0 39 0.00086 35.8 18.0 111 66-190 226-354 (581)
121 PF09730 BicD: Microtubule-ass 88.0 8.4 0.00018 41.7 12.8 37 126-165 32-68 (717)
122 KOG1937 Uncharacterized conser 87.8 37 0.0008 35.2 17.3 28 207-234 492-519 (521)
123 PF05622 HOOK: HOOK protein; 87.8 0.16 3.5E-06 53.8 0.0 123 66-188 375-529 (713)
124 PF14662 CCDC155: Coiled-coil 87.7 23 0.00049 32.7 16.2 35 80-114 13-47 (193)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.5 16 0.00035 30.8 15.9 50 146-195 50-100 (132)
126 KOG0964 Structural maintenance 87.5 45 0.00097 37.7 17.9 97 69-165 693-812 (1200)
127 PF06160 EzrA: Septation ring 86.9 43 0.00092 35.0 18.6 161 64-230 164-333 (560)
128 KOG4643 Uncharacterized coiled 86.8 62 0.0013 36.7 19.1 77 147-232 469-545 (1195)
129 KOG1853 LIS1-interacting prote 86.7 27 0.00058 33.9 14.0 49 90-138 21-69 (333)
130 PF09755 DUF2046: Uncharacteri 86.5 35 0.00076 33.6 17.5 28 83-110 35-62 (310)
131 PF00769 ERM: Ezrin/radixin/mo 86.3 28 0.00061 32.7 14.0 31 205-235 98-128 (246)
132 COG2433 Uncharacterized conser 86.0 6.8 0.00015 41.7 10.6 88 141-230 418-508 (652)
133 KOG0996 Structural maintenance 86.0 50 0.0011 37.9 17.6 25 207-231 574-598 (1293)
134 PRK11519 tyrosine kinase; Prov 85.8 21 0.00045 38.2 14.5 31 199-229 359-389 (719)
135 PF05667 DUF812: Protein of un 85.5 15 0.00033 38.9 13.0 98 138-235 328-433 (594)
136 PF08614 ATG16: Autophagy prot 85.4 10 0.00022 34.0 10.2 25 64-88 70-94 (194)
137 PRK09343 prefoldin subunit bet 85.2 21 0.00046 29.9 13.2 22 205-226 87-108 (121)
138 PF07106 TBPIP: Tat binding pr 85.0 19 0.00042 31.3 11.6 49 141-189 82-130 (169)
139 PF05008 V-SNARE: Vesicle tran 85.0 9.8 0.00021 28.8 8.6 44 140-185 34-78 (79)
140 KOG0288 WD40 repeat protein Ti 84.6 17 0.00037 37.2 12.3 70 92-164 9-81 (459)
141 PF13870 DUF4201: Domain of un 84.2 28 0.00061 30.5 12.5 95 128-231 20-119 (177)
142 PF14197 Cep57_CLD_2: Centroso 83.9 12 0.00025 28.9 8.5 37 86-122 2-38 (69)
143 COG1340 Uncharacterized archae 83.7 46 0.00099 32.6 19.5 27 200-226 183-209 (294)
144 PF15619 Lebercilin: Ciliary p 83.6 35 0.00075 31.1 15.6 25 166-190 162-186 (194)
145 KOG4674 Uncharacterized conser 83.6 1.1E+02 0.0024 36.8 20.5 60 168-227 805-868 (1822)
146 PRK10884 SH3 domain-containing 83.6 25 0.00054 32.4 12.1 12 97-108 94-105 (206)
147 COG0419 SbcC ATPase involved i 83.5 75 0.0016 34.9 21.0 76 89-165 494-572 (908)
148 PF05483 SCP-1: Synaptonemal c 83.4 74 0.0016 34.7 19.1 138 86-229 538-687 (786)
149 PF04156 IncA: IncA protein; 83.4 30 0.00066 30.3 13.6 27 86-112 78-104 (191)
150 PF10168 Nup88: Nuclear pore c 83.4 73 0.0016 34.6 18.6 63 170-232 648-714 (717)
151 KOG0249 LAR-interacting protei 83.1 22 0.00048 38.8 12.8 23 208-230 235-257 (916)
152 KOG0288 WD40 repeat protein Ti 82.9 35 0.00077 35.0 13.7 84 140-229 29-112 (459)
153 PF10146 zf-C4H2: Zinc finger- 82.9 34 0.00075 32.0 12.9 67 149-225 36-103 (230)
154 PF04880 NUDE_C: NUDE protein, 82.9 0.8 1.7E-05 41.0 2.0 33 64-100 17-49 (166)
155 KOG0933 Structural maintenance 82.5 76 0.0016 36.1 16.9 19 87-105 739-757 (1174)
156 KOG3433 Protein involved in me 82.2 10 0.00022 34.9 8.8 58 172-229 85-142 (203)
157 PRK10246 exonuclease subunit S 81.9 89 0.0019 35.1 17.8 47 170-216 824-873 (1047)
158 PF05911 DUF869: Plant protein 81.7 88 0.0019 34.4 17.5 98 112-226 61-164 (769)
159 KOG2264 Exostosin EXT1L [Signa 81.5 5.2 0.00011 42.5 7.5 18 147-164 88-105 (907)
160 TIGR00634 recN DNA repair prot 81.2 36 0.00077 35.3 13.6 22 205-226 348-369 (563)
161 TIGR01000 bacteriocin_acc bact 81.0 64 0.0014 32.4 17.7 30 201-230 289-318 (457)
162 KOG0963 Transcription factor/C 80.9 85 0.0018 33.7 17.5 52 173-227 290-341 (629)
163 KOG0963 Transcription factor/C 80.8 76 0.0017 34.0 15.7 76 154-229 234-311 (629)
164 PF09730 BicD: Microtubule-ass 80.7 58 0.0013 35.5 15.2 35 75-109 48-82 (717)
165 PF10481 CENP-F_N: Cenp-F N-te 80.5 17 0.00036 35.4 10.0 25 204-228 103-127 (307)
166 COG2433 Uncharacterized conser 80.2 16 0.00034 39.1 10.5 80 126-209 427-514 (652)
167 KOG4603 TBP-1 interacting prot 80.2 48 0.001 30.4 13.0 92 125-226 83-178 (201)
168 KOG0971 Microtubule-associated 80.0 1.1E+02 0.0024 34.6 18.2 153 76-231 256-431 (1243)
169 PF15397 DUF4618: Domain of un 79.8 59 0.0013 31.2 16.3 19 93-111 92-110 (258)
170 PF10498 IFT57: Intra-flagella 79.7 62 0.0013 32.3 14.1 128 102-232 197-350 (359)
171 KOG0976 Rho/Rac1-interacting s 79.6 1.1E+02 0.0024 34.3 19.8 126 64-189 151-312 (1265)
172 PF15294 Leu_zip: Leucine zipp 79.2 53 0.0011 31.9 13.0 31 203-233 215-245 (278)
173 PF08702 Fib_alpha: Fibrinogen 79.1 43 0.00093 29.2 12.2 94 134-229 35-130 (146)
174 PF04156 IncA: IncA protein; 79.0 44 0.00095 29.3 12.7 17 199-215 171-187 (191)
175 PF11932 DUF3450: Protein of u 78.3 57 0.0012 30.2 13.7 8 220-227 134-141 (251)
176 PF03962 Mnd1: Mnd1 family; I 78.1 10 0.00022 34.2 7.5 23 172-194 73-95 (188)
177 KOG0979 Structural maintenance 78.0 1.1E+02 0.0024 34.7 16.4 15 177-191 313-327 (1072)
178 COG3206 GumC Uncharacterized p 77.6 64 0.0014 32.4 13.8 136 87-229 244-392 (458)
179 PRK06569 F0F1 ATP synthase sub 77.6 51 0.0011 29.3 14.8 93 128-235 41-135 (155)
180 PF05557 MAD: Mitotic checkpoi 77.5 17 0.00037 38.8 10.1 54 174-232 565-621 (722)
181 KOG4403 Cell surface glycoprot 77.3 36 0.00077 35.3 11.7 21 204-224 355-375 (575)
182 smart00503 SynN Syntaxin N-ter 77.3 34 0.00074 27.1 12.4 26 202-227 88-113 (117)
183 KOG0243 Kinesin-like protein [ 77.1 69 0.0015 36.3 14.7 98 138-237 455-552 (1041)
184 PF14817 HAUS5: HAUS augmin-li 77.1 78 0.0017 34.0 14.7 44 66-109 302-345 (632)
185 TIGR02971 heterocyst_DevB ABC 76.9 67 0.0015 30.3 16.4 21 207-227 183-203 (327)
186 cd00632 Prefoldin_beta Prefold 76.8 38 0.00082 27.3 10.5 21 145-165 20-40 (105)
187 TIGR02231 conserved hypothetic 76.5 43 0.00093 34.3 12.4 27 203-229 145-171 (525)
188 PF04111 APG6: Autophagy prote 76.4 40 0.00086 32.8 11.5 28 202-229 98-125 (314)
189 PLN03229 acetyl-coenzyme A car 76.3 96 0.0021 34.1 15.2 102 62-185 430-545 (762)
190 PF08614 ATG16: Autophagy prot 76.1 13 0.00028 33.3 7.6 33 202-234 136-168 (194)
191 PF10186 Atg14: UV radiation r 76.1 64 0.0014 29.6 17.7 57 170-226 93-149 (302)
192 PF09738 DUF2051: Double stran 75.2 31 0.00067 33.7 10.4 89 131-227 71-164 (302)
193 PF04100 Vps53_N: Vps53-like, 75.1 57 0.0012 32.6 12.5 18 148-165 88-105 (383)
194 PF15450 DUF4631: Domain of un 75.1 1.2E+02 0.0025 32.1 19.1 134 63-200 339-480 (531)
195 PF06785 UPF0242: Uncharacteri 74.9 83 0.0018 31.7 13.2 20 146-165 163-182 (401)
196 PF08647 BRE1: BRE1 E3 ubiquit 74.8 33 0.00071 27.6 8.9 30 171-200 20-49 (96)
197 PF15035 Rootletin: Ciliary ro 74.6 66 0.0014 29.1 14.2 96 123-227 59-176 (182)
198 TIGR03794 NHPM_micro_HlyD NHPM 74.5 93 0.002 30.7 14.6 24 204-227 228-251 (421)
199 PF03245 Phage_lysis: Bacterio 74.4 13 0.00028 31.5 6.7 28 208-235 40-67 (125)
200 PF06637 PV-1: PV-1 protein (P 74.3 83 0.0018 32.1 13.2 82 141-227 288-380 (442)
201 KOG0946 ER-Golgi vesicle-tethe 74.2 1.2E+02 0.0025 33.9 15.1 46 68-113 730-775 (970)
202 TIGR01010 BexC_CtrB_KpsE polys 73.6 71 0.0015 30.9 12.5 45 170-221 216-260 (362)
203 cd07648 F-BAR_FCHO The F-BAR ( 73.6 77 0.0017 29.4 15.8 61 155-215 137-201 (261)
204 PF06008 Laminin_I: Laminin Do 73.3 79 0.0017 29.4 16.8 63 119-187 137-204 (264)
205 COG0419 SbcC ATPase involved i 72.3 1.6E+02 0.0034 32.5 20.5 148 86-234 271-441 (908)
206 KOG1962 B-cell receptor-associ 72.3 53 0.0011 30.8 10.7 56 171-226 154-209 (216)
207 TIGR03185 DNA_S_dndD DNA sulfu 71.3 1.1E+02 0.0025 32.2 14.3 15 123-137 393-407 (650)
208 PF05911 DUF869: Plant protein 71.2 1.7E+02 0.0037 32.3 18.6 80 150-229 594-692 (769)
209 PF05557 MAD: Mitotic checkpoi 70.7 1.4 3E-05 47.0 0.0 32 198-229 252-283 (722)
210 PRK15178 Vi polysaccharide exp 70.5 1.1E+02 0.0024 31.4 13.5 59 169-227 280-338 (434)
211 TIGR02977 phageshock_pspA phag 70.0 84 0.0018 28.7 11.5 23 203-225 113-135 (219)
212 PF10146 zf-C4H2: Zinc finger- 69.9 70 0.0015 30.0 11.1 12 191-202 44-55 (230)
213 KOG4657 Uncharacterized conser 69.9 1E+02 0.0023 29.3 13.2 42 123-164 43-84 (246)
214 PRK11519 tyrosine kinase; Prov 69.7 1E+02 0.0022 33.1 13.7 20 204-223 378-397 (719)
215 PF14197 Cep57_CLD_2: Centroso 69.1 40 0.00086 25.9 7.8 18 171-188 50-67 (69)
216 PF05700 BCAS2: Breast carcino 68.9 61 0.0013 29.7 10.4 37 82-118 136-172 (221)
217 KOG0982 Centrosomal protein Nu 68.9 47 0.001 34.3 10.2 71 77-147 306-379 (502)
218 PRK10361 DNA recombination pro 68.9 1.5E+02 0.0031 31.0 14.0 24 207-230 137-160 (475)
219 KOG4809 Rab6 GTPase-interactin 68.7 1E+02 0.0022 33.0 12.8 64 96-159 331-408 (654)
220 PF10153 DUF2361: Uncharacteri 68.6 72 0.0016 27.0 11.0 37 70-106 2-38 (114)
221 PF08581 Tup_N: Tup N-terminal 68.6 42 0.00092 26.6 8.0 41 140-182 6-46 (79)
222 PRK10869 recombination and rep 68.4 1.4E+02 0.0029 31.3 13.9 23 203-225 348-370 (553)
223 PF05667 DUF812: Protein of un 68.3 1.7E+02 0.0037 31.2 17.9 42 65-106 318-359 (594)
224 PRK09841 cryptic autophosphory 68.2 1E+02 0.0022 33.1 13.3 53 92-146 277-329 (726)
225 KOG0980 Actin-binding protein 67.5 2.2E+02 0.0047 32.1 19.8 54 170-226 464-517 (980)
226 PF06248 Zw10: Centromere/kine 67.4 1.6E+02 0.0035 30.6 17.6 111 123-235 48-175 (593)
227 PRK00409 recombination and DNA 67.3 1.5E+02 0.0033 32.4 14.5 20 208-227 605-624 (782)
228 PF09787 Golgin_A5: Golgin sub 67.3 1.6E+02 0.0034 30.4 19.9 20 169-188 222-241 (511)
229 TIGR00634 recN DNA repair prot 67.1 1.6E+02 0.0035 30.5 16.8 27 201-227 337-363 (563)
230 KOG4687 Uncharacterized coiled 67.0 1.3E+02 0.0027 29.8 12.3 84 75-164 90-186 (389)
231 COG5185 HEC1 Protein involved 67.0 1.7E+02 0.0038 30.8 14.2 141 66-226 254-398 (622)
232 KOG4677 Golgi integral membran 66.8 1.7E+02 0.0037 30.6 13.9 61 124-184 234-318 (554)
233 KOG0999 Microtubule-associated 66.6 1.7E+02 0.0036 31.6 13.9 27 167-193 106-132 (772)
234 PF10234 Cluap1: Clusterin-ass 66.1 70 0.0015 30.8 10.4 22 119-140 142-163 (267)
235 PF11180 DUF2968: Protein of u 65.6 1.1E+02 0.0025 28.2 11.7 68 95-164 95-166 (192)
236 PRK11281 hypothetical protein; 65.6 1.7E+02 0.0038 33.5 14.9 19 208-226 232-250 (1113)
237 KOG3478 Prefoldin subunit 6, K 65.5 87 0.0019 26.8 12.0 87 125-227 23-114 (120)
238 TIGR03752 conj_TIGR03752 integ 65.3 75 0.0016 33.0 11.1 27 207-233 113-139 (472)
239 PF14257 DUF4349: Domain of un 65.1 28 0.00061 32.3 7.5 61 168-233 132-192 (262)
240 KOG0994 Extracellular matrix g 65.0 2E+02 0.0044 33.6 14.8 43 92-134 1460-1505(1758)
241 KOG0982 Centrosomal protein Nu 65.0 1.8E+02 0.0039 30.3 18.8 50 66-115 220-269 (502)
242 PRK13453 F0F1 ATP synthase sub 64.8 98 0.0021 27.2 12.1 29 184-218 116-144 (173)
243 COG1340 Uncharacterized archae 64.8 1.5E+02 0.0032 29.1 17.7 54 171-225 134-187 (294)
244 KOG4403 Cell surface glycoprot 64.7 40 0.00087 34.9 8.9 54 109-165 232-286 (575)
245 TIGR01069 mutS2 MutS2 family p 64.3 1.6E+02 0.0034 32.3 13.9 17 208-224 594-610 (771)
246 PF13747 DUF4164: Domain of un 64.3 74 0.0016 25.5 9.2 39 127-165 31-73 (89)
247 PF13094 CENP-Q: CENP-Q, a CEN 64.0 42 0.0009 29.0 7.9 48 169-223 35-82 (160)
248 TIGR00998 8a0101 efflux pump m 63.8 75 0.0016 29.8 10.2 14 218-231 187-200 (334)
249 PRK10476 multidrug resistance 63.8 1.4E+02 0.003 28.6 12.7 11 95-105 92-102 (346)
250 PF15070 GOLGA2L5: Putative go 63.7 2.1E+02 0.0046 30.7 15.3 20 207-226 199-218 (617)
251 KOG4643 Uncharacterized coiled 63.7 2.7E+02 0.0059 31.9 20.1 26 206-231 581-606 (1195)
252 TIGR02231 conserved hypothetic 63.7 87 0.0019 32.1 11.3 19 169-187 153-171 (525)
253 COG4985 ABC-type phosphate tra 63.5 53 0.0012 31.5 8.9 25 91-115 159-183 (289)
254 PF11559 ADIP: Afadin- and alp 63.0 95 0.0021 26.4 13.8 29 77-105 61-89 (151)
255 PRK11020 hypothetical protein; 63.0 25 0.00054 30.0 6.0 105 142-258 2-114 (118)
256 COG4477 EzrA Negative regulato 62.7 2.2E+02 0.0047 30.4 16.0 66 166-231 345-410 (570)
257 PF07106 TBPIP: Tat binding pr 62.2 69 0.0015 27.8 9.0 63 121-189 72-137 (169)
258 PRK12704 phosphodiesterase; Pr 62.1 2.1E+02 0.0045 29.9 17.4 11 228-238 185-195 (520)
259 cd00179 SynN Syntaxin N-termin 62.0 92 0.002 25.9 13.1 28 202-229 87-114 (151)
260 PF08647 BRE1: BRE1 E3 ubiquit 62.0 82 0.0018 25.3 10.7 50 168-221 45-94 (96)
261 PRK06975 bifunctional uroporph 61.9 2.3E+02 0.0049 30.4 15.4 70 93-165 343-412 (656)
262 PF07139 DUF1387: Protein of u 61.9 1.2E+02 0.0026 29.8 11.3 93 77-189 155-257 (302)
263 PF10211 Ax_dynein_light: Axon 61.7 1.1E+02 0.0024 27.5 10.5 81 147-227 86-187 (189)
264 PRK10246 exonuclease subunit S 61.7 2.8E+02 0.006 31.3 18.2 15 172-186 294-308 (1047)
265 PRK06231 F0F1 ATP synthase sub 61.6 1.3E+02 0.0028 27.4 12.7 32 182-219 144-175 (205)
266 PF05335 DUF745: Protein of un 61.4 1.3E+02 0.0028 27.4 13.4 98 132-231 71-172 (188)
267 KOG1666 V-SNARE [Intracellular 60.9 1.5E+02 0.0032 27.9 15.4 86 64-158 6-92 (220)
268 PF00261 Tropomyosin: Tropomyo 60.7 1.4E+02 0.003 27.5 15.9 21 214-234 173-193 (237)
269 PF05615 THOC7: Tho complex su 60.6 64 0.0014 27.2 8.3 25 207-231 85-109 (139)
270 PF13801 Metal_resist: Heavy-m 60.6 75 0.0016 24.5 8.2 53 140-194 61-113 (125)
271 COG3264 Small-conductance mech 60.2 1.5E+02 0.0032 33.0 12.7 96 118-219 86-183 (835)
272 COG5293 Predicted ATPase [Gene 60.1 1.4E+02 0.003 31.4 11.8 78 143-221 340-424 (591)
273 PF03954 Lectin_N: Hepatic lec 60.0 18 0.0004 31.6 4.9 75 131-217 58-133 (138)
274 PF08776 VASP_tetra: VASP tetr 60.0 25 0.00054 24.7 4.6 10 177-186 28-37 (40)
275 KOG0993 Rab5 GTPase effector R 59.8 2.2E+02 0.0048 29.6 18.4 143 80-223 304-489 (542)
276 PF03904 DUF334: Domain of unk 59.2 1.6E+02 0.0036 27.9 11.6 70 75-153 43-112 (230)
277 PRK00409 recombination and DNA 59.1 89 0.0019 34.2 10.9 10 218-227 608-617 (782)
278 PF03962 Mnd1: Mnd1 family; I 58.8 1.3E+02 0.0028 27.2 10.3 16 93-108 66-81 (188)
279 PF06156 DUF972: Protein of un 58.7 59 0.0013 27.1 7.5 38 124-164 4-41 (107)
280 KOG4603 TBP-1 interacting prot 58.7 1.1E+02 0.0023 28.2 9.6 20 145-164 79-98 (201)
281 PF15290 Syntaphilin: Golgi-lo 58.4 1.8E+02 0.0038 28.6 11.6 41 118-164 86-126 (305)
282 KOG4593 Mitotic checkpoint pro 58.4 2.8E+02 0.0061 30.4 20.2 20 66-85 113-132 (716)
283 PF13863 DUF4200: Domain of un 58.3 1E+02 0.0022 25.1 14.2 46 184-229 62-107 (126)
284 KOG1853 LIS1-interacting prote 58.3 1.9E+02 0.0041 28.3 16.0 44 119-165 82-125 (333)
285 PF05781 MRVI1: MRVI1 protein; 58.0 1.5E+02 0.0033 31.3 11.9 102 128-233 212-322 (538)
286 PF08776 VASP_tetra: VASP tetr 57.9 45 0.00097 23.5 5.5 16 170-185 13-28 (40)
287 PF07794 DUF1633: Protein of u 57.7 1.5E+02 0.0033 31.5 11.7 104 125-231 594-719 (790)
288 PF12252 SidE: Dot/Icm substra 57.5 2.9E+02 0.0063 32.0 14.3 132 92-226 1066-1223(1439)
289 TIGR03321 alt_F1F0_F0_B altern 57.5 1.6E+02 0.0035 27.3 11.6 14 186-199 105-118 (246)
290 TIGR00255 conserved hypothetic 57.3 1.9E+02 0.0041 28.0 12.5 73 144-230 219-291 (291)
291 PRK14159 heat shock protein Gr 57.2 28 0.00062 31.4 5.8 31 205-235 32-62 (176)
292 PRK13169 DNA replication intia 56.2 48 0.001 27.9 6.6 38 124-164 4-41 (110)
293 PF14182 YgaB: YgaB-like prote 55.9 71 0.0015 25.6 7.1 25 169-193 41-65 (79)
294 PF12718 Tropomyosin_1: Tropom 55.8 1.4E+02 0.0029 25.9 16.9 21 118-138 32-52 (143)
295 TIGR03319 YmdA_YtgF conserved 55.8 2.6E+02 0.0057 29.2 17.1 13 283-295 244-256 (514)
296 COG3851 UhpB Signal transducti 55.6 97 0.0021 31.8 9.7 37 113-149 277-316 (497)
297 PF04880 NUDE_C: NUDE protein, 55.3 13 0.00028 33.4 3.3 42 120-164 6-47 (166)
298 COG3206 GumC Uncharacterized p 55.3 2.3E+02 0.005 28.4 15.9 56 168-229 313-368 (458)
299 PF13851 GAS: Growth-arrest sp 55.0 1.7E+02 0.0036 26.7 18.0 102 123-227 57-167 (201)
300 COG5293 Predicted ATPase [Gene 54.9 2.8E+02 0.0061 29.3 13.9 49 143-194 384-432 (591)
301 KOG1962 B-cell receptor-associ 54.8 1.3E+02 0.0028 28.2 9.8 29 168-196 186-214 (216)
302 PF04949 Transcrip_act: Transc 54.7 1.6E+02 0.0035 26.4 13.1 84 141-224 52-147 (159)
303 KOG4360 Uncharacterized coiled 54.7 1.1E+02 0.0024 32.4 10.1 77 76-156 220-296 (596)
304 KOG0018 Structural maintenance 54.6 1.9E+02 0.0042 33.1 12.5 18 88-105 200-217 (1141)
305 PF15290 Syntaphilin: Golgi-lo 54.0 73 0.0016 31.2 8.3 50 68-117 82-138 (305)
306 CHL00118 atpG ATP synthase CF0 53.7 1.5E+02 0.0032 25.6 12.7 15 186-200 122-136 (156)
307 KOG4572 Predicted DNA-binding 53.3 1.8E+02 0.0039 32.8 11.7 34 175-212 1092-1125(1424)
308 PF10498 IFT57: Intra-flagella 52.8 2.5E+02 0.0054 28.0 14.8 52 170-222 296-347 (359)
309 TIGR03794 NHPM_micro_HlyD NHPM 52.5 2.4E+02 0.0053 27.8 16.5 25 209-233 226-250 (421)
310 PLN03184 chloroplast Hsp70; Pr 52.2 3.3E+02 0.0071 29.2 13.6 15 244-258 645-659 (673)
311 PF10234 Cluap1: Clusterin-ass 52.1 1.6E+02 0.0035 28.4 10.2 29 208-236 188-216 (267)
312 KOG4572 Predicted DNA-binding 52.0 4.1E+02 0.0088 30.2 15.9 15 213-227 1088-1102(1424)
313 PF15070 GOLGA2L5: Putative go 52.0 3.3E+02 0.0072 29.2 18.1 41 69-109 95-135 (617)
314 PF13870 DUF4201: Domain of un 51.9 1.6E+02 0.0036 25.7 18.5 93 136-233 75-168 (177)
315 TIGR01069 mutS2 MutS2 family p 51.9 2E+02 0.0043 31.6 12.1 23 171-193 535-557 (771)
316 PF05529 Bap31: B-cell recepto 51.8 1E+02 0.0022 27.3 8.4 15 172-186 158-172 (192)
317 PF11932 DUF3450: Protein of u 51.8 2E+02 0.0043 26.6 13.7 24 141-164 80-103 (251)
318 TIGR03185 DNA_S_dndD DNA sulfu 51.6 3.2E+02 0.0069 28.9 19.7 20 204-223 450-469 (650)
319 PRK11820 hypothetical protein; 51.5 2.4E+02 0.0051 27.3 13.1 74 143-230 215-288 (288)
320 PF02646 RmuC: RmuC family; I 51.4 53 0.0012 31.5 7.0 35 198-232 36-70 (304)
321 PRK03598 putative efflux pump 51.3 2.2E+02 0.0048 27.0 13.8 21 206-226 181-201 (331)
322 PF12761 End3: Actin cytoskele 51.0 93 0.002 28.7 8.1 18 92-109 99-116 (195)
323 PF10481 CENP-F_N: Cenp-F N-te 50.8 2.5E+02 0.0055 27.5 13.9 23 204-226 96-118 (307)
324 TIGR02971 heterocyst_DevB ABC 50.8 2.2E+02 0.0048 26.8 12.8 19 204-222 187-205 (327)
325 PF08581 Tup_N: Tup N-terminal 50.6 1.2E+02 0.0027 23.9 9.2 66 170-236 6-72 (79)
326 PF10226 DUF2216: Uncharacteri 50.2 1.6E+02 0.0035 27.3 9.4 93 69-178 49-142 (195)
327 PF00261 Tropomyosin: Tropomyo 50.1 2.1E+02 0.0045 26.4 17.5 21 127-147 91-111 (237)
328 PF09731 Mitofilin: Mitochondr 50.0 3.1E+02 0.0068 28.3 19.0 62 142-203 311-381 (582)
329 PRK10929 putative mechanosensi 49.9 4.6E+02 0.01 30.3 19.4 52 126-182 185-236 (1109)
330 PRK15422 septal ring assembly 49.7 1.3E+02 0.0029 24.0 8.0 25 140-164 27-51 (79)
331 PRK15422 septal ring assembly 49.5 1.4E+02 0.0029 24.0 8.4 44 194-237 30-73 (79)
332 KOG0994 Extracellular matrix g 49.0 5.2E+02 0.011 30.6 18.8 37 200-236 1707-1743(1758)
333 PRK03598 putative efflux pump 49.0 1.7E+02 0.0037 27.8 10.0 58 174-233 144-201 (331)
334 smart00502 BBC B-Box C-termina 48.9 1.3E+02 0.0028 23.6 12.1 29 205-233 74-102 (127)
335 PF07321 YscO: Type III secret 48.4 1.9E+02 0.0042 25.5 15.5 80 111-192 40-119 (152)
336 PF04728 LPP: Lipoprotein leuc 48.4 99 0.0021 23.2 6.5 41 147-189 5-45 (56)
337 KOG4005 Transcription factor X 48.4 1.2E+02 0.0027 29.2 8.7 26 118-143 94-119 (292)
338 KOG0774 Transcription factor P 48.3 2.8E+02 0.006 27.2 11.8 50 143-192 105-167 (334)
339 PF04012 PspA_IM30: PspA/IM30 48.0 2.1E+02 0.0045 25.7 17.9 75 64-138 26-101 (221)
340 PF04420 CHD5: CHD5-like prote 48.0 36 0.00079 29.8 4.9 58 168-227 40-97 (161)
341 PF04799 Fzo_mitofusin: fzo-li 47.8 1.5E+02 0.0032 26.9 8.7 28 125-152 124-151 (171)
342 KOG3809 Microtubule-binding pr 47.7 3.2E+02 0.0068 28.7 11.9 91 143-233 477-576 (583)
343 PF09969 DUF2203: Uncharacteri 47.3 67 0.0015 27.1 6.2 22 168-189 20-41 (120)
344 PRK13729 conjugal transfer pil 47.3 2.7E+02 0.0058 29.2 11.6 20 207-226 101-120 (475)
345 PRK11020 hypothetical protein; 47.0 92 0.002 26.7 6.8 24 123-146 33-56 (118)
346 PF08340 DUF1732: Domain of un 46.8 38 0.00083 27.5 4.4 75 143-230 13-87 (87)
347 KOG4673 Transcription factor T 46.6 4.5E+02 0.0098 29.2 19.5 24 213-236 533-556 (961)
348 PRK13729 conjugal transfer pil 46.4 3.6E+02 0.0079 28.2 12.3 26 208-233 95-120 (475)
349 PF13801 Metal_resist: Heavy-m 46.3 1.4E+02 0.0029 23.1 7.8 16 174-189 86-101 (125)
350 PF01576 Myosin_tail_1: Myosin 46.2 6.7 0.00014 43.0 0.0 53 179-231 578-630 (859)
351 PF06008 Laminin_I: Laminin Do 46.1 2.5E+02 0.0054 26.1 19.4 54 64-117 48-101 (264)
352 PF06705 SF-assemblin: SF-asse 45.8 2.5E+02 0.0054 26.0 17.3 17 179-195 125-141 (247)
353 COG4985 ABC-type phosphate tra 45.6 2.2E+02 0.0047 27.5 9.8 81 141-226 160-244 (289)
354 PF08232 Striatin: Striatin fa 45.3 39 0.00084 29.0 4.5 32 116-147 20-51 (134)
355 TIGR03755 conj_TIGR03755 integ 45.2 1.2E+02 0.0026 31.2 8.6 107 64-184 257-373 (418)
356 PF02183 HALZ: Homeobox associ 45.1 46 0.00099 23.6 4.1 25 207-231 16-40 (45)
357 PF12761 End3: Actin cytoskele 44.9 1.9E+02 0.0042 26.7 9.2 20 204-223 175-194 (195)
358 PF05837 CENP-H: Centromere pr 44.8 1.4E+02 0.0031 24.4 7.7 16 216-231 57-72 (106)
359 PLN02939 transferase, transfer 44.7 5.3E+02 0.011 29.5 15.8 49 64-112 197-249 (977)
360 KOG2180 Late Golgi protein sor 44.6 3.5E+02 0.0076 29.9 12.2 125 64-188 36-192 (793)
361 PRK06800 fliH flagellar assemb 44.5 90 0.0019 29.1 6.9 53 141-196 48-101 (228)
362 PF05384 DegS: Sensor protein 44.4 2.3E+02 0.005 25.2 13.0 78 157-234 29-115 (159)
363 PRK14474 F0F1 ATP synthase sub 44.3 2.8E+02 0.006 26.1 13.3 8 188-195 107-114 (250)
364 PF06818 Fez1: Fez1; InterPro 44.3 2.7E+02 0.0058 25.9 17.6 53 170-222 133-196 (202)
365 TIGR00618 sbcc exonuclease Sbc 44.3 5E+02 0.011 29.1 20.3 7 64-70 167-173 (1042)
366 KOG4677 Golgi integral membran 44.2 3.2E+02 0.0068 28.8 11.4 40 183-227 377-418 (554)
367 KOG4687 Uncharacterized coiled 43.9 3.3E+02 0.0073 26.9 15.6 44 75-118 37-80 (389)
368 PF04012 PspA_IM30: PspA/IM30 43.8 2.4E+02 0.0052 25.3 14.1 18 92-109 26-43 (221)
369 PF04728 LPP: Lipoprotein leuc 43.8 89 0.0019 23.5 5.6 42 74-115 9-50 (56)
370 PF07763 FEZ: FEZ-like protein 43.6 3E+02 0.0066 26.3 10.9 36 188-234 201-236 (244)
371 COG4396 Mu-like prophage host- 43.4 66 0.0014 28.6 5.7 55 167-221 17-72 (170)
372 PF12795 MscS_porin: Mechanose 43.3 2.7E+02 0.0057 25.6 14.3 38 80-117 29-66 (240)
373 PF12711 Kinesin-relat_1: Kine 43.1 1.1E+02 0.0023 24.9 6.4 25 167-191 43-67 (86)
374 PLN02281 chlorophyllide a oxyg 42.9 55 0.0012 34.5 6.0 35 166-200 119-153 (536)
375 KOG0964 Structural maintenance 42.5 5.9E+02 0.013 29.4 19.6 165 64-237 331-501 (1200)
376 PRK11281 hypothetical protein; 42.3 6E+02 0.013 29.4 19.0 10 64-73 124-133 (1113)
377 PRK06569 F0F1 ATP synthase sub 42.0 2.5E+02 0.0054 24.9 11.7 46 64-109 37-82 (155)
378 KOG4715 SWI/SNF-related matrix 42.0 1.3E+02 0.0028 30.1 8.0 26 207-232 280-305 (410)
379 PF01920 Prefoldin_2: Prefoldi 41.7 1.7E+02 0.0036 22.8 8.9 24 142-165 16-39 (106)
380 TIGR03752 conj_TIGR03752 integ 41.7 1.2E+02 0.0026 31.6 8.1 11 218-228 131-141 (472)
381 KOG0018 Structural maintenance 41.4 6.2E+02 0.013 29.3 15.1 10 203-212 324-333 (1141)
382 PF07544 Med9: RNA polymerase 41.1 1.5E+02 0.0032 23.3 6.9 25 169-193 22-46 (83)
383 PF12072 DUF3552: Domain of un 41.1 2.7E+02 0.0059 25.1 19.9 111 65-184 24-136 (201)
384 TIGR03319 YmdA_YtgF conserved 41.0 4.4E+02 0.0096 27.5 14.6 71 150-221 92-163 (514)
385 PF02841 GBP_C: Guanylate-bind 41.0 3.2E+02 0.007 25.9 11.5 15 208-222 282-296 (297)
386 smart00338 BRLZ basic region l 40.9 85 0.0018 23.0 5.3 19 146-164 27-45 (65)
387 PF04201 TPD52: Tumour protein 40.7 2.8E+02 0.006 25.0 9.8 17 93-109 33-49 (162)
388 PF10018 Med4: Vitamin-D-recep 40.7 1.8E+02 0.0039 25.9 8.3 20 169-188 44-63 (188)
389 PF10212 TTKRSYEDQ: Predicted 40.5 4.7E+02 0.01 27.7 12.8 96 120-223 419-514 (518)
390 PRK14156 heat shock protein Gr 40.4 53 0.0012 29.7 4.8 43 163-205 29-71 (177)
391 PF08397 IMD: IRSp53/MIM homol 40.0 2.9E+02 0.0062 25.1 15.1 84 142-227 113-206 (219)
392 PF12329 TMF_DNA_bd: TATA elem 39.9 1.7E+02 0.0038 22.5 7.8 61 117-182 8-68 (74)
393 PF03915 AIP3: Actin interacti 39.7 2.5E+02 0.0054 28.8 10.0 123 96-230 151-273 (424)
394 PF07324 DGCR6: DiGeorge syndr 39.6 3.1E+02 0.0068 25.4 10.7 62 64-125 63-126 (196)
395 PRK13824 replication initiatio 39.5 1.6E+02 0.0035 29.8 8.6 43 122-164 147-189 (404)
396 PF08606 Prp19: Prp19/Pso4-lik 39.2 1E+02 0.0022 24.1 5.6 43 141-186 18-68 (70)
397 PF05529 Bap31: B-cell recepto 39.1 1.4E+02 0.003 26.4 7.3 22 204-225 162-183 (192)
398 COG4913 Uncharacterized protei 38.9 6.1E+02 0.013 28.5 15.7 54 168-221 783-836 (1104)
399 PRK14473 F0F1 ATP synthase sub 38.8 2.5E+02 0.0055 24.1 12.7 30 184-219 106-135 (164)
400 PLN02769 Probable galacturonos 38.8 1.8E+02 0.004 31.4 9.1 89 140-235 183-278 (629)
401 PF03938 OmpH: Outer membrane 38.6 2.4E+02 0.0051 23.7 10.6 22 171-192 79-100 (158)
402 PRK14163 heat shock protein Gr 38.5 62 0.0013 30.2 5.1 39 168-206 47-85 (214)
403 PRK11578 macrolide transporter 38.2 3.8E+02 0.0082 25.9 11.7 16 214-229 162-177 (370)
404 PRK10869 recombination and rep 38.1 4.9E+02 0.011 27.2 15.0 127 95-232 243-370 (553)
405 PF07889 DUF1664: Protein of u 38.0 2.6E+02 0.0057 24.0 9.9 35 139-178 44-78 (126)
406 COG1566 EmrA Multidrug resista 38.0 2.9E+02 0.0062 27.6 9.9 12 94-105 89-100 (352)
407 KOG4593 Mitotic checkpoint pro 37.7 5.9E+02 0.013 28.0 16.7 20 169-188 276-295 (716)
408 COG1382 GimC Prefoldin, chaper 37.7 2.6E+02 0.0057 23.9 10.5 24 204-227 85-108 (119)
409 TIGR02449 conserved hypothetic 37.6 1.3E+02 0.0028 23.2 5.8 64 146-211 1-64 (65)
410 PF12718 Tropomyosin_1: Tropom 37.6 2.7E+02 0.0058 24.0 15.4 35 121-158 21-55 (143)
411 PF06005 DUF904: Protein of un 37.5 1.9E+02 0.0042 22.4 8.6 30 207-236 36-65 (72)
412 PF12795 MscS_porin: Mechanose 37.5 3.3E+02 0.0071 25.0 12.6 52 64-115 81-139 (240)
413 PRK14161 heat shock protein Gr 37.3 62 0.0014 29.2 4.8 17 170-186 28-44 (178)
414 smart00721 BAR BAR domain. 37.3 2.9E+02 0.0063 24.3 16.5 158 64-227 30-194 (239)
415 PF12252 SidE: Dot/Icm substra 37.3 7.4E+02 0.016 29.0 15.4 52 171-225 1095-1146(1439)
416 KOG0921 Dosage compensation co 37.3 50 0.0011 37.4 4.8 52 237-288 1230-1282(1282)
417 PF12709 Kinetocho_Slk19: Cent 37.1 63 0.0014 26.3 4.3 26 204-229 50-75 (87)
418 PF10482 CtIP_N: Tumour-suppre 37.1 2.7E+02 0.0059 23.9 12.2 45 180-226 75-119 (120)
419 KOG4637 Adaptor for phosphoino 37.0 3.7E+02 0.008 27.7 10.4 80 149-234 140-229 (464)
420 KOG2629 Peroxisomal membrane a 36.8 2.4E+02 0.0051 27.8 8.8 28 203-230 161-188 (300)
421 PRK10865 protein disaggregatio 36.8 2.6E+02 0.0057 30.9 10.3 21 172-192 443-463 (857)
422 PF14193 DUF4315: Domain of un 36.8 1.1E+02 0.0025 24.4 5.7 36 129-167 2-37 (83)
423 PF09311 Rab5-bind: Rabaptin-l 36.8 67 0.0015 28.6 4.9 66 65-132 12-77 (181)
424 PRK11578 macrolide transporter 36.8 1.9E+02 0.0041 28.0 8.4 29 207-237 162-190 (370)
425 TIGR03017 EpsF chain length de 36.7 4.2E+02 0.0092 26.0 16.5 105 123-233 256-365 (444)
426 PF03148 Tektin: Tektin family 36.7 4.4E+02 0.0095 26.2 16.3 47 181-227 235-289 (384)
427 PF12329 TMF_DNA_bd: TATA elem 36.5 2E+02 0.0043 22.2 7.7 28 66-93 3-30 (74)
428 PRK14151 heat shock protein Gr 36.4 72 0.0016 28.7 5.0 35 169-203 28-62 (176)
429 PF05008 V-SNARE: Vesicle tran 36.4 1.8E+02 0.004 21.8 8.5 50 175-226 28-77 (79)
430 PRK14157 heat shock protein Gr 36.3 68 0.0015 30.3 5.0 38 168-205 84-121 (227)
431 PF03961 DUF342: Protein of un 36.2 2.8E+02 0.006 28.0 9.7 29 200-228 372-400 (451)
432 PRK00888 ftsB cell division pr 35.4 63 0.0014 26.6 4.2 31 207-237 45-75 (105)
433 PF14988 DUF4515: Domain of un 35.3 3.6E+02 0.0077 24.8 14.1 62 66-138 41-102 (206)
434 PF09006 Surfac_D-trimer: Lung 35.2 63 0.0014 23.4 3.5 26 171-196 2-27 (46)
435 PF01544 CorA: CorA-like Mg2+ 35.1 3.4E+02 0.0073 24.5 9.9 7 245-251 253-259 (292)
436 COG1382 GimC Prefoldin, chaper 34.8 2.9E+02 0.0064 23.6 11.9 33 205-237 79-111 (119)
437 PRK05431 seryl-tRNA synthetase 34.7 3.8E+02 0.0082 27.1 10.3 26 201-226 71-96 (425)
438 PF00435 Spectrin: Spectrin re 34.7 1.8E+02 0.004 21.3 8.9 23 142-164 45-67 (105)
439 PRK14471 F0F1 ATP synthase sub 34.4 3E+02 0.0065 23.6 12.7 15 186-200 108-122 (164)
440 PF04420 CHD5: CHD5-like prote 34.4 74 0.0016 27.9 4.7 52 140-195 42-93 (161)
441 COG0497 RecN ATPase involved i 34.2 6.1E+02 0.013 27.1 12.3 10 69-78 189-198 (557)
442 PF11559 ADIP: Afadin- and alp 33.9 2.9E+02 0.0064 23.4 14.1 13 126-138 57-69 (151)
443 KOG4005 Transcription factor X 33.8 2.1E+02 0.0045 27.7 7.8 42 143-186 109-150 (292)
444 PF06698 DUF1192: Protein of u 33.8 1E+02 0.0022 23.2 4.7 22 206-227 24-45 (59)
445 PLN02718 Probable galacturonos 33.7 2.9E+02 0.0064 29.7 9.6 88 140-235 167-261 (603)
446 PF15463 ECM11: Extracellular 33.7 1.5E+02 0.0033 25.3 6.4 46 171-216 86-132 (139)
447 KOG3595 Dyneins, heavy chain [ 33.4 8.6E+02 0.019 28.6 20.4 66 170-235 929-994 (1395)
448 PF08657 DASH_Spc34: DASH comp 33.4 1.2E+02 0.0025 29.1 6.1 37 74-110 179-215 (259)
449 PF09744 Jnk-SapK_ap_N: JNK_SA 33.3 3.5E+02 0.0075 24.0 10.0 106 72-184 47-158 (158)
450 COG0497 RecN ATPase involved i 33.2 6.3E+02 0.014 27.0 15.6 54 170-227 320-373 (557)
451 PF14915 CCDC144C: CCDC144C pr 33.0 4.9E+02 0.011 25.7 19.0 43 64-106 2-48 (305)
452 PF14182 YgaB: YgaB-like prote 32.8 2.6E+02 0.0056 22.4 7.1 9 176-184 41-49 (79)
453 PF04799 Fzo_mitofusin: fzo-li 32.8 1.8E+02 0.0039 26.4 6.9 44 113-156 119-162 (171)
454 PRK14144 heat shock protein Gr 32.7 44 0.00095 30.8 3.1 24 208-231 57-80 (199)
455 PF00769 ERM: Ezrin/radixin/mo 32.7 4.2E+02 0.0091 24.8 14.2 23 207-229 93-115 (246)
456 PRK14148 heat shock protein Gr 32.5 1.2E+02 0.0025 28.0 5.7 36 169-204 48-83 (195)
457 KOG4571 Activating transcripti 32.4 1E+02 0.0022 30.2 5.6 22 125-146 266-287 (294)
458 TIGR00414 serS seryl-tRNA synt 32.1 3.6E+02 0.0077 27.2 9.7 27 200-226 73-99 (418)
459 PF14942 Muted: Organelle biog 32.1 3.5E+02 0.0075 23.7 13.8 63 102-164 20-85 (145)
460 PF05465 Halo_GVPC: Halobacter 32.0 73 0.0016 21.1 3.2 23 170-192 1-23 (32)
461 KOG3612 PHD Zn-finger protein 32.0 1.3E+02 0.0027 32.1 6.5 21 216-236 511-531 (588)
462 PF14362 DUF4407: Domain of un 31.5 4.5E+02 0.0097 24.8 16.1 7 65-71 105-111 (301)
463 PRK10803 tol-pal system protei 31.4 1.5E+02 0.0032 28.0 6.5 22 168-189 61-82 (263)
464 COG4717 Uncharacterized conser 31.3 8.3E+02 0.018 27.8 14.7 150 66-227 625-798 (984)
465 PRK07352 F0F1 ATP synthase sub 31.2 3.6E+02 0.0077 23.5 13.2 27 186-218 119-145 (174)
466 PRK13922 rod shape-determining 31.0 1.4E+02 0.0031 27.7 6.3 16 178-193 96-111 (276)
467 cd07595 BAR_RhoGAP_Rich-like T 30.9 4.6E+02 0.0099 24.7 18.3 95 111-208 92-199 (244)
468 PRK14164 heat shock protein Gr 30.6 83 0.0018 29.4 4.6 30 166-195 75-104 (218)
469 PF00430 ATP-synt_B: ATP synth 30.5 2.9E+02 0.0063 22.2 8.7 21 132-152 34-54 (132)
470 KOG4673 Transcription factor T 30.4 8.1E+02 0.017 27.4 19.4 58 169-226 698-762 (961)
471 PF10267 Tmemb_cc2: Predicted 30.3 5.7E+02 0.012 26.0 10.7 59 154-223 260-318 (395)
472 PRK00106 hypothetical protein; 30.3 6.8E+02 0.015 26.5 17.9 14 282-295 264-277 (535)
473 PF06637 PV-1: PV-1 protein (P 30.3 6.3E+02 0.014 26.1 13.3 16 171-186 352-367 (442)
474 PF07851 TMPIT: TMPIT-like pro 30.2 3.9E+02 0.0085 26.6 9.4 27 75-101 4-30 (330)
475 PRK14155 heat shock protein Gr 30.2 94 0.002 28.8 4.8 20 274-293 186-206 (208)
476 KOG2391 Vacuolar sorting prote 30.2 1.8E+02 0.0039 29.3 7.0 36 192-227 279-314 (365)
477 PF06156 DUF972: Protein of un 30.1 2.7E+02 0.0058 23.1 7.1 8 261-268 81-88 (107)
478 PF10473 CENP-F_leu_zip: Leuci 30.1 3.8E+02 0.0082 23.4 17.1 68 141-211 48-116 (140)
479 PF15397 DUF4618: Domain of un 30.1 5.1E+02 0.011 25.0 17.9 13 214-226 204-216 (258)
480 PF12711 Kinesin-relat_1: Kine 30.1 2.9E+02 0.0063 22.4 7.0 55 171-225 27-85 (86)
481 PF10018 Med4: Vitamin-D-recep 29.9 4E+02 0.0087 23.7 10.0 35 124-164 25-59 (188)
482 PF15066 CAGE1: Cancer-associa 29.8 6.9E+02 0.015 26.4 17.4 62 148-212 456-519 (527)
483 cd07672 F-BAR_PSTPIP2 The F-BA 29.7 4.7E+02 0.01 24.4 14.6 49 169-221 155-204 (240)
484 PF07851 TMPIT: TMPIT-like pro 29.7 2.9E+02 0.0063 27.5 8.4 23 142-164 8-30 (330)
485 PRK07353 F0F1 ATP synthase sub 29.7 3.2E+02 0.007 22.6 13.1 15 186-200 105-119 (140)
486 PRK14139 heat shock protein Gr 29.7 94 0.002 28.3 4.7 13 219-231 55-67 (185)
487 PF15035 Rootletin: Ciliary ro 29.6 4.2E+02 0.0092 23.9 14.7 85 143-227 62-158 (182)
488 PF10243 MIP-T3: Microtubule-b 29.4 18 0.00039 37.4 0.0 90 140-229 430-528 (539)
489 PF14282 FlxA: FlxA-like prote 29.2 2.3E+02 0.005 23.2 6.5 59 168-231 19-79 (106)
490 PF04977 DivIC: Septum formati 29.2 1.2E+02 0.0026 22.4 4.5 39 190-228 11-49 (80)
491 PF05278 PEARLI-4: Arabidopsis 29.2 5.4E+02 0.012 25.0 11.1 94 97-193 160-253 (269)
492 PF06273 eIF-4B: Plant specifi 29.2 1.1E+02 0.0023 32.0 5.5 72 148-227 349-420 (492)
493 PF05700 BCAS2: Breast carcino 29.1 4.5E+02 0.0098 24.1 16.0 120 90-231 98-217 (221)
494 KOG0245 Kinesin-like protein [ 29.1 6.2E+02 0.013 29.4 11.4 132 30-213 563-699 (1221)
495 PF13747 DUF4164: Domain of un 29.1 3E+02 0.0065 22.0 8.7 67 120-186 7-74 (89)
496 PF12777 MT: Microtubule-bindi 29.1 3.6E+02 0.0078 26.3 8.9 81 149-229 2-83 (344)
497 PF14257 DUF4349: Domain of un 29.0 1.8E+02 0.004 26.9 6.6 70 121-193 125-194 (262)
498 KOG4196 bZIP transcription fac 29.0 1E+02 0.0022 26.9 4.5 35 156-192 78-112 (135)
499 PF04949 Transcrip_act: Transc 28.9 4.3E+02 0.0093 23.7 14.1 120 102-223 25-146 (159)
500 PF04645 DUF603: Protein of un 28.8 2.1E+02 0.0046 26.2 6.6 58 175-232 75-134 (181)
No 1
>PRK11637 AmiB activator; Provisional
Probab=97.54 E-value=0.058 Score=53.58 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHhhh
Q 038916 66 IEEHLAAQHQDIQGLL 81 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~ 81 (300)
++.+|.....+|..+-
T Consensus 52 l~~qi~~~~~~i~~~~ 67 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQ 67 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556655555555333
No 2
>PRK09039 hypothetical protein; Validated
Probab=97.42 E-value=0.008 Score=58.70 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=59.4
Q ss_pred HHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH----HHHHHHHHHHHH
Q 038916 155 KELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM----ARELEKLRAEIA 227 (300)
Q Consensus 155 q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM----arEvekLRael~ 227 (300)
++|...+++.+ ...+|..|+++|++||..|...-++++.-++...+.-+|+..+++.|... .+|++++|.+|-
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35555566665 35679999999999999999999999988888888889999999998877 567888888873
No 3
>PRK11637 AmiB activator; Provisional
Probab=97.32 E-value=0.14 Score=50.95 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYA 112 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i 112 (300)
+-++++|.....+|..+-.+-.-+-.....+.++|.....+|..+..-+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888887777766554444445555555444444444333
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.93 E-value=0.16 Score=52.83 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
.+|+.+++.-..|-..|+..|..|-..-..|+.++...+.+|....
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ 184 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE 184 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776677788888888887777777777776666665554
No 5
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.29 Score=49.53 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.+-++.|+-+++|-+...+.++.++..-.. ....+..|=.++.++|.+++++++
T Consensus 195 ~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~---~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 195 RAQQAKLAQLLEERKKTLAQLNSELSADQK---KLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666644333 344455555666777777776665
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.73 E-value=0.35 Score=45.51 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH--HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQ--MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL 167 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq--~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~ 167 (300)
....++.+|....+.|..+. ..+.+++-|+. ..++-+--.|+|.+......+..++..++.++......|.+|.
T Consensus 48 ~~~~ye~el~~lr~~id~~~--~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le-- 123 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLS--KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLE-- 123 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccchhhHHHHhHHhhhhHH--HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHH--
Confidence 44455666666666666555 33333333333 4444555567777777777888888888888888888888882
Q ss_pred cccHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVK 181 (300)
Q Consensus 168 qQv~al~aEl~~lR 181 (300)
.+|..|..||+-++
T Consensus 124 ~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 124 NQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23444444444433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.66 E-value=0.33 Score=52.31 Aligned_cols=12 Identities=8% Similarity=0.412 Sum_probs=4.6
Q ss_pred HHHHHHHhHHHH
Q 038916 66 IEEHLAAQHQDI 77 (300)
Q Consensus 66 lEe~la~Q~~Ei 77 (300)
++..+.....++
T Consensus 703 ~~~~l~~l~~~~ 714 (1179)
T TIGR02168 703 LRKELEELEEEL 714 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 344443333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.64 E-value=0.32 Score=52.76 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
++.++.....+|..+-.....+-.....+++++.....++..+.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 335 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444444444444444444444444443
No 9
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.43 E-value=0.048 Score=46.16 Aligned_cols=88 Identities=22% Similarity=0.328 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 145 SELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 145 ~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
.++..+.++++.+...-.+. ..++..++.+|.....-...+-.-|+.|...++++++.+..+++.+..+..++..|++
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~--~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDA--EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555444 2467788888999999899999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHH
Q 038916 225 EIANSEKRAR 234 (300)
Q Consensus 225 el~n~ekR~r 234 (300)
++..++....
T Consensus 81 ~~~~a~~~l~ 90 (132)
T PF07926_consen 81 EAESAKAELE 90 (132)
T ss_pred HHHHHHHHHH
Confidence 9988877543
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.41 E-value=0.6 Score=50.35 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=6.0
Q ss_pred HHHHHHHhHHHHHhh
Q 038916 66 IEEHLAAQHQDIQGL 80 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L 80 (300)
++.+++....++..+
T Consensus 675 l~~e~~~l~~~~~~l 689 (1179)
T TIGR02168 675 RRREIEELEEKIEEL 689 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444333333333
No 11
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=96.39 E-value=0.37 Score=48.72 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=88.2
Q ss_pred HHHHHHHHhHHHHHhhhhhccch-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRL-----AATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG 139 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRL-----a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra 139 (300)
.+|+.---..+|+++|--+--|| |+|..+++.=..+-+.||.+=+.--.++..+-|.=.+-..+...-+..||..
T Consensus 353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeV 432 (593)
T KOG4807|consen 353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEV 432 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 34443334446788887777776 4667777776677777776655333344433333344444444444444443
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHhH----hhcccHHHHHHHH-HHHHHHHHHHHHhhhhhhchhhhhh----------
Q 038916 140 VEA-MRSELLKVQADIKELTAVRQELT----DLQQVPALKAEIE-NVKQELQRARAAIEFDKKGYAENYE---------- 203 (300)
Q Consensus 140 ~e~-lr~El~ql~aE~q~L~a~RqEL~----d~qQv~al~aEl~-~lRqEl~r~R~a~e~Ekk~~~e~~e---------- 203 (300)
+-. ..++..-.-.=+|.|++-|+-|- ++|-+.+-.+||. .|-.||.+.|.-++-+--++-.-+-
T Consensus 433 LSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEV 512 (593)
T KOG4807|consen 433 LSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEV 512 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHH
Confidence 211 22222222222333333333332 3333444444443 3455666666655544333222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~e 230 (300)
=+.+-|.+|.-+++||..|+-||..+-
T Consensus 513 LLRVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 513 LLRVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678899999999999999998763
No 12
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.31 E-value=0.32 Score=47.35 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=98.0
Q ss_pred HHHHHHHH--HhHHHH-HhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------------------
Q 038916 64 AIIEEHLA--AQHQDI-QGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD---------------------- 118 (300)
Q Consensus 64 ~~lEe~la--~Q~~Ei-~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---------------------- 118 (300)
.+||++-- .-.+.| |.|+..|+-|......|.++|..+...|..|.+ -=++|.|
T Consensus 69 ~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrH-eL~~kdeLL~~ys~~~ee~~~~~~~~~~~ 147 (306)
T PF04849_consen 69 RLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRH-ELSMKDELLQIYSNDDEESEPESSESTPL 147 (306)
T ss_pred HHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcHhhhcccccCCCccc
Confidence 57777631 112346 899999999998889999999999999988873 2233332
Q ss_pred ----------hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--hhcccHHHHHHHHHHHHHHHH
Q 038916 119 ----------KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--DLQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 119 ----------~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~--d~qQv~al~aEl~~lRqEl~r 186 (300)
+=++...|-.|+.-+|.|.. .||.|..++..|.-.++.--|.|. -++|+....++|..|.+||.+
T Consensus 148 ~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~---~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~ 224 (306)
T PF04849_consen 148 RRNESSLSSQKCIQLEALQEKLKSLEEENE---QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELAR 224 (306)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 01334445555555554433 444455555444444444444444 345555556666666666665
Q ss_pred HHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 187 ARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 187 ~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
..-.+..-..--...+-|+-.+++.+-...-|-|+|+.-|..++
T Consensus 225 k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 225 KTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 54444443334455666677777777777777777777766553
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.29 E-value=0.35 Score=45.61 Aligned_cols=119 Identities=20% Similarity=0.341 Sum_probs=64.2
Q ss_pred HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHH
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR 144 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr 144 (300)
.++.-+..| .|-..+-||.+-....+.+|..++-|+-+++..+. +.++.+.++-....++|.|+++++.=.
T Consensus 5 ~~~~L~~iq-----~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~----~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 5 NLKSLLAIQ-----KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALE----ALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 46667778888888888888888888877764333 344445556666667777766554422
Q ss_pred HH---HHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 145 SE---LLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 145 ~E---l~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
+. .+..-.+.+.+.++-.|++ -..++..+..||..+..++......++
T Consensus 76 ~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 76 KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122233344444444443 122334444444444444444333333
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.22 E-value=0.13 Score=55.04 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYELQRMV 109 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~ 109 (300)
..|+.|+...+-|||.+.
T Consensus 421 ~rLE~dvkkLraeLq~~R 438 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSR 438 (697)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 456666666666666655
No 15
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.11 E-value=0.0058 Score=65.39 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRae 225 (300)
||+..++-.|+++.---|.+|+.
T Consensus 792 e~vnniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 792 EQVNNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred HHHhhcChHHHHHHHHHHHHHhh
Confidence 56666777777777666666654
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.95 E-value=0.34 Score=46.83 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=72.8
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh
Q 038916 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH 204 (300)
Q Consensus 126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ 204 (300)
+..+-..|+.++..++.+..++.. .|..+|..+|++|++. .+|.+.+++|+.++.|+......++-=.....+..++
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e~~~--~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEEIES--CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666677766666666332 4556888888888743 4577888888888888888888777666556666666
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHhHHHHH
Q 038916 205 GQVMEKKLIS----MARELEKLRAEIANSEKRA 233 (300)
Q Consensus 205 ~qaMeknlis----MarEvekLRael~n~ekR~ 233 (300)
+...++-+.. =..||.+|++.+..-++..
T Consensus 260 I~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 260 IAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6666655542 3568888888887777653
No 17
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.74 E-value=0.83 Score=40.46 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=9.9
Q ss_pred hhhhccchhhhHHHHHHHHHH
Q 038916 80 LLADNQRLAATHVALKQELEV 100 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeLaa 100 (300)
++.+|-.......+-+.++..
T Consensus 31 ~l~~~~~~~~~~~vtk~d~e~ 51 (177)
T PF07798_consen 31 VLNDSLEKVAQDLVTKSDLEN 51 (177)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 444444444444455555544
No 18
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.71 E-value=1.8 Score=43.80 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=56.6
Q ss_pred HHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHH
Q 038916 71 AAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKV 150 (300)
Q Consensus 71 a~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql 150 (300)
..-..|++.-..|-+-.-.....+++++..+++|+.++.....+++. + +-.+.+...|+|++.+++- .+-.+|
T Consensus 105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqt--r--l~~l~~qr~ql~aq~qsl~---a~~k~L 177 (499)
T COG4372 105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT--R--LKTLAEQRRQLEAQAQSLQ---ASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33345667666666666666778999999999999999855554443 2 3456777788888888644 333344
Q ss_pred HHHHHHHHHHHHHhH
Q 038916 151 QADIKELTAVRQELT 165 (300)
Q Consensus 151 ~aE~q~L~a~RqEL~ 165 (300)
.+-+-+|..-+.+|.
T Consensus 178 Q~s~~Qlk~~~~~L~ 192 (499)
T COG4372 178 QASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.63 E-value=0.69 Score=44.69 Aligned_cols=59 Identities=36% Similarity=0.434 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
+..+|..+|+||......++.-++.-.+.-.|++.++..+..+..+.++|.++|..+++
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888899999999999999999999999999887
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.47 Score=52.47 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=97.9
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH----HHHHHHHHHHhHHhhh-
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ----MREMYDKSVQLEVDLR- 138 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq----~r~l~~k~~K~EaElr- 138 (300)
...+.+|+.-..||+.|=. .+.-.--|+++|....+|+--+. .++.....-+ +-++.+.+-.++.++.
T Consensus 687 ~~~q~el~~le~eL~~le~----~~~kf~~l~~ql~l~~~~l~l~~---~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 687 RAIQKELEALERELKSLEA----QSQKFRDLKQQLELKLHELALLE---KRLEQNEFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHhcChHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777775543 34445678999999999885543 2222211100 1222222223333332
Q ss_pred ---hhHHHHHHHHHHHHHHHH--------HHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhH
Q 038916 139 ---GVEAMRSELLKVQADIKE--------LTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ 206 (300)
Q Consensus 139 ---a~e~lr~El~ql~aE~q~--------L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~q 206 (300)
++...-+++..++.+.+. |..+-.||. -.+++.+-..+++.-++|.++....+|..++....+=.|+.
T Consensus 760 ~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 760 KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233334433332 222333332 23456777777888888888888888888877777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
.+++++.++..|+..|++.|.++++
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999998887765
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.58 E-value=1 Score=51.98 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh-h--------------------hHHHHHHHHHHHHHhHHhhhhhHHHHH
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRM-D--------------------KDVQMREMYDKSVQLEVDLRGVEAMRS 145 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~-e--------------------~Elq~r~l~~k~~K~EaElra~e~lr~ 145 (300)
+-.++...++.+..++.-|+.|...++.+.+ . .+-....+...+.++|.++..+..--+
T Consensus 856 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~ 935 (1486)
T PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE 935 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4556667777777778888777777766655 1 111133334444444444443333233
Q ss_pred HHHHHHHHHHHHHHHHHHhH-------------------h--------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhch
Q 038916 146 ELLKVQADIKELTAVRQELT-------------------D--------LQQVPALKAEIENVKQELQRARAAIEFDKKGY 198 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL~-------------------d--------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~ 198 (300)
+..+++.+.+......+.+. | ..-.+.++++|..+.++...++..+..-++.+
T Consensus 936 ~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~ 1015 (1486)
T PRK04863 936 QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQL 1015 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433 1 11256677777777777777777777766666
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
...-+.+..+++++....++++.+..+|.
T Consensus 1016 ~q~~q~l~slksslq~~~e~L~E~eqe~~ 1044 (1486)
T PRK04863 1016 AQYNQVLASLKSSYDAKRQMLQELKQELQ 1044 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777777777766664
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.37 E-value=2.5 Score=47.44 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
+..+..+++.++.++...-..+..-+....+.-.++..++.++..+..++++++..+..
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554444444555556666666666666666666666654
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.36 E-value=2.4 Score=43.71 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e 192 (300)
.|..|..+|..++.||..++....
T Consensus 338 ~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 338 EVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhhc
Confidence 477788888888888876655543
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=0.81 Score=51.85 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHH---HHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 170 VPALKAEIENVKQELQRA---RAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~---R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
+..+..+.+.+..+|..+ ...+.-++-.....+++.+.++..|..+..|++.++.+|...++
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555 44455556566667888889999999999999999998877665
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.29 E-value=2 Score=48.52 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=41.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 167 LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
.+++....++++..+++...+.++...-+....+.-.+...-+..+....++++++++.++..+..+
T Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566666665555555555544444444444555556677777788888888887766654
No 26
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.14 E-value=2.3 Score=44.56 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=86.4
Q ss_pred hccchhhhHH---HHHHHHHHHHHHHHHHHhhh----hhhh--hhhHHH-HHHHHHHH----HHhHHhhhhhHHHHHHHH
Q 038916 83 DNQRLAATHV---ALKQELEVAQYELQRMVHYA----DSFR--MDKDVQ-MREMYDKS----VQLEVDLRGVEAMRSELL 148 (300)
Q Consensus 83 dNqRLa~~h~---aLrqeLaa~~~Elq~L~~~i----~~~r--~e~Elq-~r~l~~k~----~K~EaElra~e~lr~El~ 148 (300)
=|-|||.... -|+.+=-....||..|.... .+++ .|.|+- .+.+++.+ .|+|.|+..+..=-+++.
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr 126 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELR 126 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4778887764 45556556666665554322 2222 255555 44444444 445544443322112211
Q ss_pred HHHHHH-HHHHHHHHHhHh----------------------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 149 KVQADI-KELTAVRQELTD----------------------LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 149 ql~aE~-q~L~a~RqEL~d----------------------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
+...+. +.+...|.++.+ .-.+.-|++|+..|+.+|.++|..++.|--...+.--++
T Consensus 127 ~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~ 206 (546)
T KOG0977|consen 127 KKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRV 206 (546)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 111111 122233333320 123677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HHHHHHHHH
Q 038916 206 QVMEKKLISMA----RELEKLRAE 225 (300)
Q Consensus 206 qaMeknlisMa----rEvekLRae 225 (300)
|.+..+|.-|. +||.-+|.-
T Consensus 207 q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 207 QTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998 666655543
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.05 E-value=0.31 Score=47.21 Aligned_cols=121 Identities=20% Similarity=0.327 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccH
Q 038916 93 ALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVP 171 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~ 171 (300)
.|+.++..+..|......+...++.+... -.....++.+++ .+..|-..+..++++|+..+.+|. +..++.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-----~~~~~~~~~el~---~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEESDS-----EEDIEELEEELE---KLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp ----------------------------------HH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----chHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778877777666666621111 111222332222 344444555556666666666553 123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
.-..+|+....++-+....+..++ .+..+..+.++..+..+...+++||.
T Consensus 85 ~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 85 EELEELDEEEEEYWREYNELQLEL---IEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555555555 44445555666666666666666654
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.00 E-value=1.4 Score=50.01 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=13.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 198 YAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 198 ~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
..+++..++ .+.++..+..+|..|..+++
T Consensus 1017 l~dnL~~~~-~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 1017 LQDNLTLRK-RENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 333333333 34455555555555554444
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=94.89 E-value=2.3 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 038916 170 VPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e 192 (300)
+..+..+|..++.|+...+.+++
T Consensus 379 l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 379 VEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555554
No 30
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=94.85 E-value=0.95 Score=44.49 Aligned_cols=83 Identities=30% Similarity=0.422 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-HhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQEL-TDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE 218 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL-~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE 218 (300)
+-.+-+||.++++++.. ++.-+ .++-||+.|+++++++|+||.+.++++--.-+.- .+...+-|
T Consensus 225 vs~Le~eL~~iqaqL~t---vks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~------------sl~~qaAe 289 (372)
T COG3524 225 VSKLEDELIVIQAQLDT---VKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQ------------SLSNQAAE 289 (372)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcc------------chhHHHHH
Confidence 34566777788885444 44444 3679999999999999999999999987654321 56777888
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 038916 219 LEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 219 vekLRael~n~ekR~ra~~ 237 (300)
.|+|=-|-..|+|-..|+.
T Consensus 290 fq~l~lE~~fAekay~AAl 308 (372)
T COG3524 290 FQRLYLENTFAEKAYAAAL 308 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777887555543
No 31
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.85 E-value=4.2 Score=46.61 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHH
Q 038916 67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYE 104 (300)
Q Consensus 67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~E 104 (300)
+.+|+.-..+|..|-.....+......|.+.+.....|
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333334444444444444433333
No 32
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=3.4 Score=43.58 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh------------------hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 038916 93 ALKQELEVAQYELQRMVHYADSFRMD------------------KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADI 154 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~~~i~~~r~e------------------~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~ 154 (300)
-|+-++..+.+||..+..+.+..+.. .=..-.....++++||.||+ .++.+|..++.|.
T Consensus 54 Eleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK---q~r~el~~~q~E~ 130 (772)
T KOG0999|consen 54 ELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK---QLRQELTNVQEEN 130 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34555566666666666555554441 11112345678999999988 5667788888888
Q ss_pred HHHHHHHHHhHhhcc-----cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH---HHHHHHHHHHHHHHH
Q 038916 155 KELTAVRQELTDLQQ-----VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK---LISMARELEKLRAEI 226 (300)
Q Consensus 155 q~L~a~RqEL~d~qQ-----v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn---lisMarEvekLRael 226 (300)
..|...-+++-+..+ =.-|++||-..+-==+|.-+-+.-=---|+..-.|+..+..+ +++++.||-+|-.++
T Consensus 131 erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 131 ERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEET 210 (772)
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 888888887763221 233555555443322333333221111234444455555443 667777777776666
Q ss_pred Hh
Q 038916 227 AN 228 (300)
Q Consensus 227 ~n 228 (300)
+.
T Consensus 211 el 212 (772)
T KOG0999|consen 211 EL 212 (772)
T ss_pred HH
Confidence 53
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.77 E-value=1.5 Score=47.58 Aligned_cols=90 Identities=23% Similarity=0.274 Sum_probs=63.4
Q ss_pred HHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--------------------hhhHHHHHHHHHH
Q 038916 70 LAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR--------------------MDKDVQMREMYDK 129 (300)
Q Consensus 70 la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r--------------------~e~Elq~r~l~~k 129 (300)
+..-..+.+.+-.+|+++..+...|+.+| -++.|+.+|..-..+.. +|+|-..+++..-
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l 133 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL 133 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788889999999999999999999 99999999986533332 3555555555544
Q ss_pred HHHhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 130 SVQLEVDLRGVEAMRSELLKVQADIKELTAV 160 (300)
Q Consensus 130 ~~K~EaElra~e~lr~El~ql~aE~q~L~a~ 160 (300)
.-++|.=--.++.++.++.....++.+|...
T Consensus 134 r~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 134 RKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432233667777777777777777664
No 34
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.70 E-value=2.1 Score=41.65 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHhHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM----ARELEKLRAEIANSEK 231 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM----arEvekLRael~n~ek 231 (300)
++...+.+|+.+++++......|+.-++...+..++++..++-+..- ..||.+|++.+..-++
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444444444444444444433221 3445555555444443
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.62 E-value=3.3 Score=49.04 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
|..|.+.|..+.++|...|++..-..+...+
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333333
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.59 E-value=8 Score=41.67 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCC
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENY-------EHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAVGNP 242 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~-------eQ~qaMeknlisMarEvekLRael~n~ekR~ra~~a~~~p 242 (300)
+..|...|..|+.+-+++-..+-.|-+-..+.. -|+...+..|..=-+||.-|++-|+ .+-+--|
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~--------~~~av~p 660 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA--------QLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCC
Confidence 344444444555555555555555544433333 3444455555555556666665553 2222235
Q ss_pred CCCcccCCCCCCCCCCC
Q 038916 243 GASFNTNYGTPEAGYPS 259 (300)
Q Consensus 243 ~~~y~~~~gnp~~~y~~ 259 (300)
...|+.+.+.+...|..
T Consensus 661 ~~~~~~~~~~~~~~~~~ 677 (697)
T PF09726_consen 661 SDSYCSAITPPTPHYSS 677 (697)
T ss_pred ccccccCCCCCCccchh
Confidence 55676555555555554
No 37
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.59 E-value=1.4 Score=40.71 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 038916 209 EKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 209 eknlisMarEvekLRael~n~ek 231 (300)
...+.++.+||++||++|..+..
T Consensus 130 ~~~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 130 EDELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 34588889999999999886544
No 38
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.58 E-value=3.2 Score=49.21 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIK----ELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q----~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
.-.+.....|+|.++..++..-++=.+.++|+. +|..--+.+. -..++..+..++....-||...-+-++.
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344455555666666555443333333333333 2222111111 1345666667777777788888888888
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 194 DKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 194 Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+.......-.+++-++..+.-+..+++..|+..+.++|..+.
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777888888888888888888888888888775443
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.58 E-value=5.9 Score=41.59 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 038916 74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHY 111 (300)
Q Consensus 74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~ 111 (300)
..+...|=.++.-|-.....|+.+|...+.+...|...
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555566666666555555443
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.55 E-value=3.3 Score=40.28 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
+++....+..|+..|.....|+.+. +..||+.+|.+|...-..++.-++...+.-+|++.++..|.....+.+.+
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~-----d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDC-----DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554211 13456666666666666666666667777889999999999999999999
Q ss_pred HHHHHhHHH
Q 038916 223 RAEIANSEK 231 (300)
Q Consensus 223 Rael~n~ek 231 (300)
+.+|..+++
T Consensus 252 ~~~I~~ae~ 260 (312)
T smart00787 252 NTEIAEAEK 260 (312)
T ss_pred HHHHHHHHH
Confidence 999998888
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.32 E-value=6 Score=44.76 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=13.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHH
Q 038916 166 DLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R 188 (300)
|...|..++.+|..+.++|....
T Consensus 769 D~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 769 DPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665543
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.29 E-value=3.8 Score=38.70 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG 197 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~ 197 (300)
+++++..++.++..|.-...+|+ .++..++..+..++.++.-.++.++.+.+.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~--~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLE--KEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444442 245556666666666666666666665533
No 43
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.27 E-value=5.2 Score=40.17 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhh-------------hhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFD-------------KKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~E-------------kk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
+..+..+|+.++.++..+++.+.-- .+...-.-+.......+|.....++..++++++.++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666555431 1111111112234556666666666666666665554
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.23 E-value=4.4 Score=41.82 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQ 162 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~Rq 162 (300)
...-.+|..+++||+.+..-.++..-++..=.-..-+-...++.-.+.++.|..||..+...+..+.....
T Consensus 126 ~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 126 ASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777655555544444444444444445555556666777776666666665544333
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.23 E-value=2.4 Score=44.07 Aligned_cols=138 Identities=17% Similarity=0.352 Sum_probs=93.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh------hHH--HHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRMD------KDV--QMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELT 158 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e------~El--q~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~ 158 (300)
..=.|..+..++...+..|..+...+.++.++ .++ ++..+|+ .||.|+.|-..|...+..+...+..+.
T Consensus 243 y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~le~E~~Ak~~V~~~~~~l~~~l~~~~ 319 (560)
T PF06160_consen 243 YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---ILEKEVEAKKYVEKNLKELYEYLEHAK 319 (560)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445677777888888887777777777664 122 1344443 467777776667766666666555555
Q ss_pred HHHHHhH---------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 159 AVRQELT---------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 159 a~RqEL~---------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
..-.+|. +...+..+..+|..+...+......++..+..|....+.+..+.++|..+..+...+.
T Consensus 320 ~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~ 399 (560)
T PF06160_consen 320 EQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN 399 (560)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444 5667888889999999999999999998888888777777777666666665555555
Q ss_pred HHHH
Q 038916 224 AEIA 227 (300)
Q Consensus 224 ael~ 227 (300)
..|.
T Consensus 400 ~~l~ 403 (560)
T PF06160_consen 400 ESLQ 403 (560)
T ss_pred HHHH
Confidence 5554
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.15 E-value=7.3 Score=39.43 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 038916 64 AIIEEHL 70 (300)
Q Consensus 64 ~~lEe~l 70 (300)
.+|++-+
T Consensus 154 ~il~~l~ 160 (562)
T PHA02562 154 KLVEDLL 160 (562)
T ss_pred HHHHHHh
Confidence 4555544
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=94.11 E-value=6.8 Score=42.12 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKLRAEI 226 (300)
Q Consensus 208 MeknlisMarEvekLRael 226 (300)
+.+.+..+..++..++.++
T Consensus 347 ~~~~~~~le~~~~~l~~~~ 365 (880)
T PRK02224 347 LREDADDLEERAEELREEA 365 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 48
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=4.3 Score=42.67 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=65.1
Q ss_pred HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHHH-----HHHHHHHHHHhHHhhhhh---
Q 038916 74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR-----MDKDVQ-----MREMYDKSVQLEVDLRGV--- 140 (300)
Q Consensus 74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r-----~e~Elq-----~r~l~~k~~K~EaElra~--- 140 (300)
..||..+-.||++|+....+|+.+|.....-+--|..+..++. .+++|. +..-.+++.|||++|...
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999887765554444443433333 344444 444457888888887532
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 141 ---------------------EAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 141 ---------------------e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
..+++++.++++++..|..+-.|..
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355678889999999888888876
No 49
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.00 E-value=0.015 Score=61.47 Aligned_cols=140 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 88 AATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 88 a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
+.....|+..+...++|+.++-....+.+.+ .|..+.+|-.++.-+-++.+....+|+|+.-++..+.++..+-.++
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334556666666666666665444444432 2233455555555666666666677777666665555555544444
Q ss_pred H-----------------------------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHH
Q 038916 165 T-----------------------------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVME 209 (300)
Q Consensus 165 ~-----------------------------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMe 209 (300)
. +++.+.+++..|+.+++++....+.+.-+.+...........++
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 23446666666666666666666666666655555555666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 210 KKLISMARELEKLRAEIA 227 (300)
Q Consensus 210 knlisMarEvekLRael~ 227 (300)
..+.++..|.++|..+.+
T Consensus 398 ek~~~l~~eke~l~~e~~ 415 (713)
T PF05622_consen 398 EKLEALEEEKERLQEERD 415 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655554
No 50
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.94 E-value=5.3 Score=40.14 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=27.5
Q ss_pred hchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 196 KGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 196 k~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
......+.+....+.++..+.||++-.+.-+...-+|.
T Consensus 341 ~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 341 ERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667778888899999988888887665554
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.91 E-value=4 Score=35.60 Aligned_cols=99 Identities=21% Similarity=0.336 Sum_probs=58.9
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVR 161 (300)
Q Consensus 82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~R 161 (300)
.++--|-++..+|+.+|...+.+...+-.-..+.+.+- -.|+.+ +..|..++.+++.|+..|..-+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~ei-----------e~L~~e---l~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEI-----------ETLEEE---LEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666777777777777765553333322221 123333 3355666667777777777666
Q ss_pred HHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 162 QELT-DLQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 162 qEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
.+|+ .+|+...-+.||+.+.-.+.+.-.-.+.|
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6665 45555566667777776666666666666
No 52
>PRK03918 chromosome segregation protein; Provisional
Probab=93.86 E-value=9.9 Score=40.75 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 038916 94 LKQELEVAQYELQR 107 (300)
Q Consensus 94 LrqeLaa~~~Elq~ 107 (300)
|++++.....+|..
T Consensus 198 l~~~~~~l~~ei~~ 211 (880)
T PRK03918 198 KEKELEEVLREINE 211 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.82 E-value=9.1 Score=43.14 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=18.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
...-++...++++|..+..++.+++.++.....+.
T Consensus 880 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 880 KELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555666665555554444
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.74 E-value=3.4 Score=42.95 Aligned_cols=142 Identities=15% Similarity=0.326 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------HH--HHHHHHHHHHHhHHhhhhhHHHHHH-------HHHHHH
Q 038916 88 AATHVALKQELEVAQYELQRMVHYADSFRMDK------DV--QMREMYDKSVQLEVDLRGVEAMRSE-------LLKVQA 152 (300)
Q Consensus 88 a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~------El--q~r~l~~k~~K~EaElra~e~lr~E-------l~ql~a 152 (300)
.=+|..+..++...+..|......+.++.++. ++ ++-.+++ .||.|+.|-..+... +.+++.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd---~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD---ILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33445666677777777766666666666641 11 1333333 233444433333333 333333
Q ss_pred HHHHHHHHHHHhH--------hhcccHHHHHHHHHHHHHHHHHHHHhhhh-------hhchhhhhhhhHHHHHHHHHHHH
Q 038916 153 DIKELTAVRQELT--------DLQQVPALKAEIENVKQELQRARAAIEFD-------KKGYAENYEHGQVMEKKLISMAR 217 (300)
Q Consensus 153 E~q~L~a~RqEL~--------d~qQv~al~aEl~~lRqEl~r~R~a~e~E-------kk~~~e~~eQ~qaMeknlisMar 217 (300)
..+.|...-..|. +...+..+..+|..+..++......++.- ++...+..+++..++++...+..
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222222 33446667777776666666554444433 34445566667777777788888
Q ss_pred HHHHHHHHHHhHHHH
Q 038916 218 ELEKLRAEIANSEKR 232 (300)
Q Consensus 218 EvekLRael~n~ekR 232 (300)
.|+.||.+...++++
T Consensus 405 ~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 405 MLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877766553
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.70 E-value=7.3 Score=45.34 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 178 ENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 178 ~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+.|.+.|...|+..++=.|.....-..+..++++|....+++..+|.+|.+++++
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888877777666667777889999999999999999999999999885
No 56
>PF13514 AAA_27: AAA domain
Probab=93.70 E-value=8 Score=43.28 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=38.2
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hHHHHHHHHHHHHHhHHhhh
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD-----KDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e-----~Elq~r~l~~k~~K~EaElr 138 (300)
.|+++=+.+..--+.+...|++++..++++++.|..-+.+++.+ +=.+...++.+...+++++.
T Consensus 160 ~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~ 228 (1111)
T PF13514_consen 160 KELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELA 228 (1111)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444555556666777777777777777777666666553 33445555666666655554
No 57
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.67 E-value=3.8 Score=41.73 Aligned_cols=88 Identities=27% Similarity=0.306 Sum_probs=57.1
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQ----ELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG 139 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrq----eLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra 139 (300)
..+|-.--+...||.|=+.--|-+..+..+||. +|.+.++||+.|+..- . .|.+..-.=.++
T Consensus 385 SAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQY----------S----QKCLEnahLaqa 450 (593)
T KOG4807|consen 385 SAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQY----------S----QKCLENAHLAQA 450 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HHHHHHHHHHHH
Confidence 455666667788999999999999999999984 6788888888876221 1 122222222233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+++-+.-|.|-.-|.|.|.+..|||.
T Consensus 451 lEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 451 LEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44444455566667777777777774
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.62 E-value=5.8 Score=36.46 Aligned_cols=24 Identities=13% Similarity=0.465 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e 192 (300)
+|...+.+|+.++++|...+..+.
T Consensus 85 ~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 85 RIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777776666665
No 59
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.61 E-value=8.6 Score=39.11 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
|-.+-.|+.+++|+|-+.+.+| | +-...|+.-+++|..--..||++-+-.+..-+++++.+++|-+.+.-.+.+
T Consensus 156 l~~qr~ql~aq~qsl~a~~k~L---Q---~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~ 229 (499)
T COG4372 156 LAEQRRQLEAQAQSLQASQKQL---Q---ASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT 229 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666 2 223334444444443334466666555556666666666666655544444
Q ss_pred HHHH
Q 038916 223 RAEI 226 (300)
Q Consensus 223 Rael 226 (300)
-.+|
T Consensus 230 ~q~i 233 (499)
T COG4372 230 AQAI 233 (499)
T ss_pred HHHH
Confidence 4444
No 60
>PRK09039 hypothetical protein; Validated
Probab=93.60 E-value=2.5 Score=41.39 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh--hhHHH-HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHH--------HHHHHHH
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRM--DKDVQ-MREMYDKSVQLEVDLRGVEAMRSELLKVQAD--------IKELTAV 160 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~--e~Elq-~r~l~~k~~K~EaElra~e~lr~El~ql~aE--------~q~L~a~ 160 (300)
.-|.+++...++||..|...|..+-- .-|.. ...+-+++..+.+++.+.+..|+++...-+. -.++..+
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l 121 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGEL 121 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Confidence 35677777777777777666655321 11111 3334444455555555555555444432211 1223333
Q ss_pred HHHhHhh-cccHHHHHHHHHHHHHHHHHHHH
Q 038916 161 RQELTDL-QQVPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 161 RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a 190 (300)
..+|++. ........++..|++||...|.+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444322 22344455555566665555554
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.53 E-value=7.8 Score=40.31 Aligned_cols=161 Identities=14% Similarity=0.211 Sum_probs=101.3
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhh-hh----hhHH--HHHHHHHHHHHhHHh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF-RM----DKDV--QMREMYDKSVQLEVD 136 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~-r~----e~El--q~r~l~~k~~K~EaE 136 (300)
..||++|+.=..++..|-.= --+.+|+.-+.-|...+.++..|...+..+ .+ ..++ |+.+|.++..+|..+
T Consensus 168 ~~le~~l~~~e~~f~~f~~l--~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVEL--TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 56888887777666665322 234566666777777777777777766666 22 3433 466666666666654
Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916 137 LRGVE--AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS 214 (300)
Q Consensus 137 lra~e--~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis 214 (300)
-=.++ .+-.++.+++..+......=..| .+....+.++.+..+|...-..|+.|.++...--...+.+.+.|..
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l----~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~ 321 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEEL----DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEH 321 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333 24556666666666655555555 5666667777777777777777777777776666666666666666
Q ss_pred HHHHHHHHHHHHHhHH
Q 038916 215 MARELEKLRAEIANSE 230 (300)
Q Consensus 215 MarEvekLRael~n~e 230 (300)
+..+.+.|..+|+...
T Consensus 322 ~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 322 AKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665443
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.52 E-value=7.4 Score=43.68 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=71.1
Q ss_pred HHHHHHHhHHHHHhhhhhccchh-------hhHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hHHHHHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLA-------ATHVALKQELEVAQYELQRMVHYADSFRMD----------KDVQMREMYD 128 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa-------~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e----------~Elq~r~l~~ 128 (300)
+|++...-+.+|.....-+..+- +....++.+..++..||..+...+++.+.+ .+-.|+.+..
T Consensus 293 ~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 293 KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK 372 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444333 444566777777777777777666666663 2222333333
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhHh-----hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916 129 KSVQLEVDLRGVEAMRSELLKVQADI-KELTAVRQELTD-----LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY 202 (300)
Q Consensus 129 k~~K~EaElra~e~lr~El~ql~aE~-q~L~a~RqEL~d-----~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~ 202 (300)
.. +.++..+..++.+. +.+...+.|+.+ .++|..+...+..|++|++-....+.-+........
T Consensus 373 ~~----------d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~ 442 (1074)
T KOG0250|consen 373 EV----------DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIE 442 (1074)
T ss_pred HH----------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33 23333344444444 444444444431 133455555555555555555555544433322222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRa 224 (300)
.-+-.+.+.+..+..+|+.|.+
T Consensus 443 ~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 443 GEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2333344444444444444443
No 63
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.51 E-value=6.7 Score=36.88 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
.++|..|..-+..|..+..++.+|-.....|+.++...+..+....
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998888888877777777666554443
No 64
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.45 E-value=13 Score=40.71 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e 118 (300)
..++-.|.--..||..|-..+.-+...+..+++.|.+.+.+|.........++++
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd 344 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD 344 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667778888888888888888777888877777777766666666654
No 65
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.36 E-value=2.7 Score=41.23 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=96.3
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK-DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAV 160 (300)
Q Consensus 82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~-Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~ 160 (300)
..|..|..+...|+|+|..++-|+.-|...+..+|... ++..+... -.=|.-+..++.++....+++-|+|.+.-.
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998888888853 22233222 122334555788999999999999999999
Q ss_pred HHHhHhhcccHHHHHHHHHHHHHHHHHHHHh-------hhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 161 RQELTDLQQVPALKAEIENVKQELQRARAAI-------EFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 161 RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~-------e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
++||. ..-.+.+-..+.|-+||...-..- +-=.--|.=.-|+++..+.+...+.+=|-|-...++.
T Consensus 156 keEl~--~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 156 KEELV--TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99993 122233444445555554433221 1000012223467778888888888888888888765
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.28 E-value=2.9 Score=43.78 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
-..|-+.|+.|+-+|..-+..|+..+
T Consensus 319 n~~L~~~I~dL~~ql~e~~r~~e~~L 344 (546)
T KOG0977|consen 319 NSALEKRIEDLEYQLDEDQRSFEQAL 344 (546)
T ss_pred ChhHHHHHHHHHhhhhhhhhhhhhhh
Confidence 35666667777766666666666654
No 67
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.24 E-value=8.3 Score=37.09 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
..+..+..+..++.++++.+..++.
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666655444
No 68
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.21 E-value=10 Score=40.86 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 210 KKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 210 knlisMarEvekLRael~n~ekR~ra 235 (300)
|+|-...+|.+-||..|........+
T Consensus 190 ~~La~~q~e~d~L~~qLsk~~~~le~ 215 (739)
T PF07111_consen 190 KELAEAQREADLLREQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555556677777777655554433
No 69
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.08 E-value=2.8 Score=46.44 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=28.8
Q ss_pred hhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916 79 GLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118 (300)
Q Consensus 79 ~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e 118 (300)
+|=-.|.||-++-|-||+=.+..+++.|.+..-....+.|
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 4445688888888888888888888888877444444443
No 70
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=93.01 E-value=7 Score=40.06 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=48.4
Q ss_pred cccHHHHH-HHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916 168 QQVPALKA-EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 168 qQv~al~a-El~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~~ 237 (300)
+++-.... .++++++ ...+-+..+-+.....++++..+--++-+|++|+-.|-+.|.+ ++.++.|
T Consensus 131 ~~Ll~~~~~~~e~f~e---~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~--~ktrG~w 196 (448)
T COG1322 131 KQLLKPLREVLEKFRE---QLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG--NKTRGNW 196 (448)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCccccH
Confidence 44444443 4455555 3445577778889999999999999999999999999999999 4444443
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=13 Score=41.00 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT- 165 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~- 165 (300)
|-+....|.++|.....-+|.|..-+-++|+..--+-.++-.-.-..|..+-.+..+.++|.-+..-+++|...+|+|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455556666666666666766666666666533333333333334455555567777778888888888888888887
Q ss_pred -----------hhc---ccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 166 -----------DLQ---QVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 166 -----------d~q---Qv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
+.+ ++.+...+-+.+||-|.-+.-.++-|+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 245555555566665555555554444
No 72
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.80 E-value=8.1 Score=38.06 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHH
Q 038916 148 LKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 148 ~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r 186 (300)
..++.++..+..-.++|. +.-.|..++++|+.+++.|..
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 345555555555555553 344566777777777766644
No 73
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.69 E-value=0.2 Score=54.12 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhH
Q 038916 151 QADIKELTAVRQELT 165 (300)
Q Consensus 151 ~aE~q~L~a~RqEL~ 165 (300)
.-|+-.+.+++.||-
T Consensus 798 KP~i~avt~ACEE~r 812 (1102)
T KOG1924|consen 798 KPDIVAVTAACEELR 812 (1102)
T ss_pred ChHHHHHHHHHHHHH
Confidence 345555566666654
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.39 E-value=17 Score=41.92 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 038916 212 LISMARELEKLRAEIANSEK 231 (300)
Q Consensus 212 lisMarEvekLRael~n~ek 231 (300)
+..+.++|+.+|.+|+...+
T Consensus 923 ~eel~a~L~e~r~rL~~l~~ 942 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGR 942 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555544443
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.28 E-value=14 Score=37.36 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 038916 143 MRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+.+++..++.++..+.....++.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 76
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.07 E-value=3.8 Score=44.34 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ 122 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq 122 (300)
+-||+.|+-+.+++..+..-|. .|...|+.+..+++.......---+|.|++
T Consensus 94 dklE~~Lankda~lrq~eekn~-------slqerLelaE~~l~qs~rae~lpeveael~ 145 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNR-------SLQERLELAEPKLQQSLRAETLPEVEAELA 145 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhh-------hhhHHHHHhhHhhHhHHhhhhhhhhHHHHH
Confidence 7899999999988886666554 455666666666655544333333344444
No 77
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.96 E-value=17 Score=39.27 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 038916 68 EHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK 119 (300)
Q Consensus 68 e~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~ 119 (300)
+.|+-|-.||+||=.+-+-|-.+-.-=+-.|.++--||..|......-++|.
T Consensus 66 elis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEa 117 (739)
T PF07111_consen 66 ELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEA 117 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4567777999999888876666654445567888889999987777777764
No 78
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.88 E-value=5.2 Score=40.86 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=67.7
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 133 LEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 133 ~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
.++-+.-+-.|..++..+++++..| +.-++ +.-||+.++.+|..|+++|...|+.+.-.. +. . .
T Consensus 281 a~~~~~lI~~Le~qLa~~~aeL~~L---~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~-g~-~----------~ 345 (434)
T PRK15178 281 ITAIYQLIAGFETQLAEAKAEYAQL---MVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKL-GS-Q----------G 345 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----------c
Confidence 3333333444445555666644433 22233 668999999999999999999998886432 11 0 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhh-------CCCCCCcccCCCCCCCC
Q 038916 212 LISMARELEKLRAEIANSEKRARAAAAV-------GNPGASFNTNYGTPEAG 256 (300)
Q Consensus 212 lisMarEvekLRael~n~ekR~ra~~a~-------~~p~~~y~~~~gnp~~~ 256 (300)
+-...-|+|.|..+.+.|+|...++.++ ++.-.-|=..+-+|..+
T Consensus 346 la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL~~iv~P~lP 397 (434)
T PRK15178 346 SSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAE 397 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeCCCCC
Confidence 3456778888888888888855444332 12223566667777654
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.87 E-value=18 Score=41.18 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=7.7
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRA 187 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~ 187 (300)
++..++..|..+...+...
T Consensus 522 ~~e~lk~~L~~~~~~~~e~ 540 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEK 540 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 80
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=91.60 E-value=12 Score=35.22 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 154 IKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 154 ~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
..||-....+|-.----|.-..=+..+|.+|..++...+.++......++--+++-..+.++++|+-+|+.+|+|-
T Consensus 153 ~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k 228 (238)
T PF14735_consen 153 ILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIENK 228 (238)
T ss_pred HHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHH
Confidence 3455555555542222344444455688888888888888888888888888899999999999999999999754
No 81
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=5.9 Score=33.67 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 180 VKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 180 lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
++|||.-+|+.+.-=. --.---++-.|++|..|.+|.+|-|.+|.+..+
T Consensus 63 vkqel~EAr~nV~kRl---efI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 63 VKQELEEARTNVGKRL---EFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred hHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543211 111123556788888889999999999876654
No 82
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.42 E-value=12 Score=37.57 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=14.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHH
Q 038916 166 DLQQVPALKAEIENVKQELQRA 187 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~ 187 (300)
+.-+|-.++++|+.+++.+...
T Consensus 273 ~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 273 KHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred cChHHHHHHHHHHHHHHHHHhh
Confidence 3445677777777777766553
No 83
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.36 E-value=13 Score=44.07 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=72.4
Q ss_pred HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHH
Q 038916 67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSE 146 (300)
Q Consensus 67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~E 146 (300)
.++++.-..|+..|-.+|.-|-.+-..|.+++..-..|.++|.....++++-++..-+.......++|.. ++.|-.+
T Consensus 737 ~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~---i~eL~~e 813 (1822)
T KOG4674|consen 737 NEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR---IKELERE 813 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3456677788889999999999999999999999999999999888999888777777777777777743 3455556
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 038916 147 LLKVQADIKELTAVRQELT 165 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~ 165 (300)
|..+..++++-..-.-+|+
T Consensus 814 l~~lk~klq~~~~~~r~l~ 832 (1822)
T KOG4674|consen 814 LQKLKKKLQEKSSDLRELT 832 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555544444444
No 84
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.35 E-value=8.6 Score=34.04 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHhhhhhHH-HHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEA-MRSELLKVQADIKE 156 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~-lr~El~ql~aE~q~ 156 (300)
+-.+.....++..|+..++. |++|+.++++|++-
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~kl 109 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKL 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677777777755 77778888877763
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.33 E-value=12 Score=34.50 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
.+.-.|+..+.+-++..+.=++-||++|..-+
T Consensus 154 ~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 154 SERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777788888876544
No 86
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.28 E-value=11 Score=34.25 Aligned_cols=152 Identities=19% Similarity=0.364 Sum_probs=80.5
Q ss_pred HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHH-----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELE-----VAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG 139 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLa-----a~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra 139 (300)
-|...+..-+.+|+.|..||+-|=.-- .||+-+ ...-||-.| -.-|.-.+|.+-++..+.....++
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq--~Rq~kAL~k~e~~e~~Lpql-------l~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQ--KRQEKALQKYEDTEAELPQL-------LQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888889999999998764322 222222 222233222 233444455555555554444443
Q ss_pred hHH----HHHHHHHHHHHHHHHHHH--------HHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh----
Q 038916 140 VEA----MRSELLKVQADIKELTAV--------RQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYE---- 203 (300)
Q Consensus 140 ~e~----lr~El~ql~aE~q~L~a~--------RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e---- 203 (300)
++. .-+++.++..+++.|.-+ |.+| .+++..+.++++..-..++.....++...+.+.-.+.
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL--~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k 164 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL--QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK 164 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 321 222455555555544332 3444 2345556666665555555555555555444433332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~ 227 (300)
-...+..++.++..||++|..-|.
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556667777777777777664
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.25 E-value=18 Score=41.41 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 211 KLISMARELEKLRAE 225 (300)
Q Consensus 211 nlisMarEvekLRae 225 (300)
.+...-.|+|++++|
T Consensus 675 ~lk~~q~~~eq~~~E 689 (1317)
T KOG0612|consen 675 KLKMLQNELEQENAE 689 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 88
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.20 E-value=2.9 Score=35.51 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHH
Q 038916 175 AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMA 216 (300)
Q Consensus 175 aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMa 216 (300)
+++..+++|+.....-++.=+.-+-+..|++..++.++.-|+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444555555555555444
No 89
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.94 E-value=3.9 Score=35.91 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
.-.++...||++|...|..+.........|-+-+.++.++|..+...+..+|..+..+
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888888888888888888888888888888888887777777766543
No 90
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.89 E-value=20 Score=36.94 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 038916 207 VMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n 228 (300)
.+.-.+..--.|++|||.++.+
T Consensus 359 ~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 359 PLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456788888888764
No 91
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.83 E-value=18 Score=37.54 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
.-++..|+..++.+. ..+..+.+.+...-+|++.|..--..|.+|..+|-.+|-.
T Consensus 143 ~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 143 SPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555555555322 3444577788888889998888889999999999888843
No 92
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.57 E-value=1.9 Score=32.61 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=35.2
Q ss_pred HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916 132 QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 132 K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R 188 (300)
-||+|||+=..+.+||.++++....+..--+|- -++...|.++|+.|+.|+--.|
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqea--E~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEA--EKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 367888877888888888887666655544443 1345566666666666654443
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.54 E-value=21 Score=38.08 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=18.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHh
Q 038916 85 QRLAATHVALKQELEVAQYELQRMVH 110 (300)
Q Consensus 85 qRLa~~h~aLrqeLaa~~~Elq~L~~ 110 (300)
+-|...-..|+++|..+..+|+....
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566788888888888777653
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.53 E-value=1.5 Score=40.40 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
-++-+.+.+++.....|++.|+++++..++.
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666777777777776655553
No 95
>PF13514 AAA_27: AAA domain
Probab=90.26 E-value=26 Score=39.26 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 038916 87 LAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~ 109 (300)
+......+++++..-.+++..|.
T Consensus 748 ~~~ri~~~~~~~~~f~~~~~~L~ 770 (1111)
T PF13514_consen 748 LRRRIEQMEADLAAFEEQVAALA 770 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 96
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.11 E-value=7.3 Score=36.84 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--hHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA--NSEKRA 233 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~--n~ekR~ 233 (300)
+|.+.+..|-.|+ ++.+.=+++.....++..+.+||++||++=. |+|.|=
T Consensus 81 LpIVtsQRDRFR~--------------Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 81 LPIVTSQRDRFRQ--------------RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 5666667778888899999999999999843 566563
No 97
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=90.03 E-value=13 Score=33.00 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=52.5
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 124 REMYDKSVQLEVDLRGVEAMRSELLKVQA--------DIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~lr~El~ql~a--------E~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
.++.+...+.|+....+.....-|..|-+ ++..+...+..|. -++..+.+++..+++.+..+...+..=.
T Consensus 36 a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~--~~~~~~e~~~a~l~~~l~~~~~~ia~~~ 113 (158)
T PF09486_consen 36 AELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLE--ERVRAAEAELAALRQALRAAEDEIAATR 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333 3333444444442 2344555555555555555555444444
Q ss_pred hchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 196 KGYAENYEHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 196 k~~~e~~eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
.+-.-|--|+....+.+..|.+-+|..+.+...+|
T Consensus 114 raIarn~a~id~~~er~~~l~r~~ea~~eda~DEE 148 (158)
T PF09486_consen 114 RAIARNDARIDVCRERIDRLRRAAEAAAEDAQDEE 148 (158)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcchH
Confidence 34444555666667777777777776666655443
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.88 E-value=25 Score=35.91 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
.++.+-++.+..++..-..|+.+|+.++
T Consensus 217 ~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 217 SELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666777788888888888888888
No 99
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.82 E-value=24 Score=40.44 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=58.8
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchh---hhHHHHHHHHHH---HHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLA---ATHVALKQELEV---AQYELQR-MVHYADSFRMDKDVQMREMYDKSVQLEVD 136 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa---~~h~aLrqeLaa---~~~Elq~-L~~~i~~~r~e~Elq~r~l~~k~~K~EaE 136 (300)
.+||+.+.--..++..|...++.++ ..+.-|++.+.- ...|+++ -.+....-..+.+-++.+..++..+++++
T Consensus 437 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~ 516 (1317)
T KOG0612|consen 437 QILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL 516 (1317)
T ss_pred hhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777678888888888877 455556644333 3344443 00011111123444466666666677776
Q ss_pred hhhhH----HHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 137 LRGVE----AMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 137 lra~e----~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
++..+ .+.++..++.-..+++.+.|++|.
T Consensus 517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66442 234455666666777777777776
No 100
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.45 E-value=28 Score=39.11 Aligned_cols=93 Identities=20% Similarity=0.317 Sum_probs=51.5
Q ss_pred HHHhHHHHHhhhhhccchhhh-------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH-------HhHH
Q 038916 70 LAAQHQDIQGLLADNQRLAAT-------HVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSV-------QLEV 135 (300)
Q Consensus 70 la~Q~~Ei~~L~~dNqRLa~~-------h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~-------K~Ea 135 (300)
|-.+|.|+..|-.|-+.|-.+ ..-|+++......++.++. ...+.-..+++.+..-+.+ +..+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r---er~~~~~~Ie~l~~k~~~v~y~~~~~ey~~ 252 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR---ERERKKSKIELLEKKKKWVEYKKHDREYNA 252 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccchHhhhHHHHH
Confidence 455677777777777776543 4556666666666665554 3333334555544433333 3444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 136 DLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 136 Elra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
...+.+-+|.++-.+.-+++.+...+.||.
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe 282 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELE 282 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 444455555555555555555555555554
No 101
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.45 E-value=21 Score=34.35 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGY-AENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~-~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
+....++|..++.++...+..+...+... .+..+++..++.++..+..+++.++..+.+.
T Consensus 212 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 212 LGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555555555444444333222 2233456778888888888888888887643
No 102
>PRK11546 zraP zinc resistance protein; Provisional
Probab=89.40 E-value=0.71 Score=40.45 Aligned_cols=53 Identities=23% Similarity=0.376 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
+.+||+++.--++|++.|. -..=.|-+.|.++..||..||+.|.-.|..+.-+
T Consensus 63 t~~LRqqL~aKr~ELnALl--~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALL--TANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566555555555441 1122277889999999999999888877655443
No 103
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=89.36 E-value=0.24 Score=42.28 Aligned_cols=28 Identities=46% Similarity=0.748 Sum_probs=22.3
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCcccc
Q 038916 244 ASFNTNYGTPEAGYPSNPYPVSYSMNPVQA 273 (300)
Q Consensus 244 ~~y~~~~gnp~~~y~~~~y~d~Y~~~~~~~ 273 (300)
..||.+|| +.||++|+|+++|+.|.|+.
T Consensus 75 ~sYgtsYg--~ggyGsnaYG~~~~~n~yqs 102 (132)
T PF04626_consen 75 QSYGTSYG--GGGYGSNAYGVQRSVNSYQS 102 (132)
T ss_pred cccceeec--CCcccccccCCCcCcccccc
Confidence 37888887 45899999999999887763
No 104
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.28 E-value=29 Score=35.78 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS-MARELEKLRAEI 226 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis-MarEvekLRael 226 (300)
.+++.-|+.|+-|+-|.|..+.--.|-+.+.+.|..+=|+.+.+ ..|+-.||--++
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777776665432 233333443333
No 105
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=89.19 E-value=2.3 Score=31.77 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
|.....++|+.+.++|...|+.|..-..=+.-+-+=...||..|..+...|+.+|.
T Consensus 1 ~~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 1 QPEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999998874
No 106
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=88.89 E-value=0.12 Score=53.12 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHhhhhhccchhhhHHHH---HHHHHHHHHHHHHHHhh-----------hhhhhhhhHHHHHHHHHHHHHhHHhhhhh
Q 038916 75 QDIQGLLADNQRLAATHVAL---KQELEVAQYELQRMVHY-----------ADSFRMDKDVQMREMYDKSVQLEVDLRGV 140 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aL---rqeLaa~~~Elq~L~~~-----------i~~~r~e~Elq~r~l~~k~~K~EaElra~ 140 (300)
+||..|= .||-..+-.| +.+|..+.+..+.|+.. +..++.|+|.+|++++.+.+-+|.|||
T Consensus 376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr-- 450 (495)
T PF12004_consen 376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR-- 450 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh--
Confidence 4776554 4555555444 45777777777777432 347778999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTDLQ 168 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d~q 168 (300)
+=++|.+.+...||-|-|.|
T Consensus 451 --------re~~~m~~~~~~kqrii~aQ 470 (495)
T PF12004_consen 451 --------REHAEMQAVLDHKQRIIDAQ 470 (495)
T ss_dssp ----------------------------
T ss_pred --------hhHHHHhcccccchHHHHHh
Confidence 55667778888888886554
No 107
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.89 E-value=13 Score=39.74 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 147 LLKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+..+++.+..+.....+|. +.-.|..+++.+..+++++.. ....+.+.+..++++..+.||++-
T Consensus 313 ~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~-----------l~~~~~~~p~~e~~~~~L~R~~~~ 381 (726)
T PRK09841 313 IVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKR-----------LNKRVSAMPSTQQEVLRLSRDVEA 381 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHH-----------HHHHHHhccHHHHHHHHHHHHHHH
Confidence 3334444444444444443 233455555555555554443 345667888999999999999999
Q ss_pred HHHHHHhH
Q 038916 222 LRAEIANS 229 (300)
Q Consensus 222 LRael~n~ 229 (300)
.|.-+...
T Consensus 382 ~~~lY~~l 389 (726)
T PRK09841 382 GRAVYLQL 389 (726)
T ss_pred HHHHHHHH
Confidence 99988754
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.78 E-value=14 Score=31.43 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 038916 88 AATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 88 a~~h~aLrqeLaa~~~Elq~L~ 109 (300)
.++.-.++-|+...+++|.+|.
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555554444
No 109
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.77 E-value=44 Score=37.24 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=25.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM 215 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM 215 (300)
..+..+++|+..+.-|+..+--.+..-...++..++|+-..+++=+..
T Consensus 494 ~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 494 KALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566666666665555555444444444555555555555554443
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.73 E-value=28 Score=39.37 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~ 227 (300)
.+..-++.++..+.+||+|+...+.
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666443
No 111
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.64 E-value=18 Score=39.37 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh--H
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV--E 141 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~--e 141 (300)
.+|-|+|+--..||..=+ .=|.-...|++.|...+.|+..-+ +...+-...|.+|+.|+..|+..- +
T Consensus 458 ~~L~e~IeKLk~E~d~e~----S~A~~~~gLk~kL~~Lr~E~sKa~-------~~~~~~~~~L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEY----TEAVIAMGLQERLENLREEFSKAN-------SQDQLMHPVLMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred hHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHhcc-------cccccccHHHHHHHHHHHHHHHHhhhc
Confidence 356666665555554211 124445667777777766664321 222222334566666666655321 2
Q ss_pred -----HHHHHHHHHHHHHH---------HHHHHHHHhH
Q 038916 142 -----AMRSELLKVQADIK---------ELTAVRQELT 165 (300)
Q Consensus 142 -----~lr~El~ql~aE~q---------~L~a~RqEL~ 165 (300)
.|+.++.-|+++.+ +...+.+||-
T Consensus 527 a~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~ 564 (762)
T PLN03229 527 APNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEIN 564 (762)
T ss_pred ccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHH
Confidence 46666666666665 3445566663
No 112
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.44 E-value=25 Score=34.01 Aligned_cols=84 Identities=17% Similarity=0.283 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHh-hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTD-LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE 218 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d-~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE 218 (300)
+..++.++..+++++. .+++-..+ .-+|..++++++.+++.|...+..+.-... ........++..+.+|
T Consensus 216 i~~L~~~l~~~~~~l~---~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re 286 (362)
T TIGR01010 216 ISTLEGELIRVQAQLA---QLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQ 286 (362)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHH
Confidence 4555555556665433 23333334 678999999999999988887766654321 1344455567777777
Q ss_pred HHHHHHHHHhHHHH
Q 038916 219 LEKLRAEIANSEKR 232 (300)
Q Consensus 219 vekLRael~n~ekR 232 (300)
++=.+.-+..+-+|
T Consensus 287 ~~~a~~~y~~~l~r 300 (362)
T TIGR01010 287 NELAQQQLKAALTS 300 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666655443
No 113
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.40 E-value=38 Score=36.08 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=21.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
...+.+.+.-+.++..+.||++-.|.-+...-.
T Consensus 365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777888888877777764433
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.33 E-value=11 Score=34.43 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=37.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
|.+.+..+++-+..+.++|....-..+.=..++....+....+...+.++-+||+.
T Consensus 84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665555555555566666677788888888888865
No 115
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=24 Score=37.39 Aligned_cols=103 Identities=22% Similarity=0.333 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc------------cHHHHHHHHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQ------------VPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQ------------v~al~aEl~~lRqEl~r~R~a 190 (300)
-+++.+++.-.|++=...+.++++-..|+.|+++..+.-..+.+..| +..-..|++.++++...++..
T Consensus 244 n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 244 NRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666677888888888888888887777763322 344445556677777777777
Q ss_pred hhhhhhchhhhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 038916 191 IEFDKKGYAENYEHG----QVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 191 ~e~Ekk~~~e~~eQ~----qaMeknlisMarEvekLRael 226 (300)
++.- .-+.++++++ ..+..++.-|..|+++|+.++
T Consensus 324 Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 324 IELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 3555666554 234455555555555555444
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.23 E-value=25 Score=38.10 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+.|.++|+.|..+++.|++.|+..++|..-
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999888876643
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=22 Score=39.18 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH------------------h-hcccHHHHHHHHHHHHHHHH---HHHHhhhhhhchhhh
Q 038916 144 RSELLKVQADIKELTAVRQELT------------------D-LQQVPALKAEIENVKQELQR---ARAAIEFDKKGYAEN 201 (300)
Q Consensus 144 r~El~ql~aE~q~L~a~RqEL~------------------d-~qQv~al~aEl~~lRqEl~r---~R~a~e~Ekk~~~e~ 201 (300)
++...|++-|+..|.--.|+|+ . .+|..-.+.||+.+.++|+- .-..+..||+.-.+.
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344555555555555555555 1 24566677777777765544 444556688777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 038916 202 YEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekL 222 (300)
+.|+|.--+.-.+-..+++++
T Consensus 516 lkq~q~a~~~~~~~~s~L~aa 536 (1118)
T KOG1029|consen 516 LKQKQSAHKETTQRKSELEAA 536 (1118)
T ss_pred HHHhhhhccCcchHHHHHHHH
Confidence 777776544333333333333
No 118
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.11 E-value=3.2 Score=31.44 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHH-hhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 179 NVKQELQRARAA-IEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 179 ~lRqEl~r~R~a-~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
.+..||...+++ +..+. +--+--.+.+.++.+|..+..|++.+|+
T Consensus 15 ~~~eEL~kvk~~n~~~e~-kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFES-KLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555554433 22222 2223334555666666666666666664
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.10 E-value=40 Score=37.54 Aligned_cols=90 Identities=26% Similarity=0.336 Sum_probs=52.2
Q ss_pred HHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHH------------------HHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 038916 69 HLAAQHQDIQGLLADNQRLAATHVALKQELEVAQY------------------ELQRMVHYADSFRMDKDVQMREMYDKS 130 (300)
Q Consensus 69 ~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~------------------Elq~L~~~i~~~r~e~Elq~r~l~~k~ 130 (300)
++-.|..+||--+.+-+|=+.....+++||.-.+. |+|+|+ ...++.+-||.++..++
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~----~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL----ELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 45666677776666766666555555555544333 333332 33345666677777777
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 131 VQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 131 ~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
..+|-=-+.-+++|.||+...- +|..+..+|+
T Consensus 403 f~~e~~~~dhe~~kneL~~a~e---kld~mgthl~ 434 (1265)
T KOG0976|consen 403 FRLEQGKKDHEAAKNELQEALE---KLDLMGTHLS 434 (1265)
T ss_pred hhhhhccchhHHHHHHHHHHHH---HHHHHhHHHH
Confidence 7777655555677777766655 4444445554
No 120
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.01 E-value=39 Score=35.79 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=64.7
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhH----------HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATH----------VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEV 135 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h----------~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~Ea 135 (300)
|++....+--||..|=..|+.|-.-. ..||...+..+.|++...+ .+..+..+..+|+
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-----------y~~~~~~k~~~~~- 293 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-----------YVSQMKSKKQHME- 293 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-----------HHHHHHhhhHHHH-
Confidence 33444445556666666666654332 3444455555555544432 2445556666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhH---hhcc-----cHHHHHHHHHHHHHHHHHHHH
Q 038916 136 DLRGVEAMRSELLKVQADIKELTAVRQELT---DLQQ-----VPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 136 Elra~e~lr~El~ql~aE~q~L~a~RqEL~---d~qQ-----v~al~aEl~~lRqEl~r~R~a 190 (300)
..++-|+.|+...+.|++.|.....+|- ++|. |.-+..|...+.++|-..-..
T Consensus 294 --~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~ 354 (581)
T KOG0995|consen 294 --KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE 354 (581)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888899999999998888888886 3333 444555555555554443333
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.01 E-value=8.4 Score=41.73 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=19.6
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+..++..+|.|++ .+|.++..+.+|...|..+-+||.
T Consensus 32 ~~~~i~~l~~elk---~~~~~~~~~~~e~~rl~~~~~~~~ 68 (717)
T PF09730_consen 32 LQQRILELENELK---QLRQELSNVQAENERLSQLNQELR 68 (717)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 345555555555555555555553
No 122
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.80 E-value=37 Score=35.23 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~r 234 (300)
.--++|+-+...++++|-+.+--.++-|
T Consensus 492 ~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 492 QYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566666666666555444443
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.76 E-value=0.16 Score=53.84 Aligned_cols=123 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhhHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR----------------------MDKDVQM 123 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r----------------------~e~Elq~ 123 (300)
|+.++.....++.+|.-+|.+|-....+|..+......|...|...+..++ +..|+..
T Consensus 375 Le~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~ 454 (713)
T PF05622_consen 375 LEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNP 454 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccc
Confidence 445555555556666666666666655554444333333333322111111 1245555
Q ss_pred HHHHHHHHHhHHhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHH
Q 038916 124 REMYDKSVQLEVDLRGVEAM-----RSELLKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~l-----r~El~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R 188 (300)
.++..++.+||.|.+.+..- .+.+..+...+......+.+|. ..+++..+.++|+.+++.++...
T Consensus 455 ~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~ 529 (713)
T PF05622_consen 455 AELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQG 529 (713)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777776654211 1122334444444444444443 22445555555555555554433
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.73 E-value=23 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=21.2
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 80 LLADNQRLAATHVALKQELEVAQYELQRMVHYADS 114 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~ 114 (300)
|=..|++|++....|+..+....+.=.+|..-+.+
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~ 47 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITD 47 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777777777776666666665555533333
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.52 E-value=16 Score=30.80 Aligned_cols=50 Identities=48% Similarity=0.637 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 146 ELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
|+++=-.+++.|..+|.++.++ .++..++++++.++.+|.......+.+|
T Consensus 50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 50 ELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445555677777777777533 2355566666666666655555555544
No 126
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.49 E-value=45 Score=37.71 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=50.3
Q ss_pred HHHHhHHHHHhhhhhccch-------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHh--
Q 038916 69 HLAAQHQDIQGLLADNQRL-------AATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVD-- 136 (300)
Q Consensus 69 ~la~Q~~Ei~~L~~dNqRL-------a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaE-- 136 (300)
++..+..+|..|..+-|++ -..|-.|++++.....|.+++...+.-...+ -.+.+..+-+..--.|+|
T Consensus 693 ~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~ 772 (1200)
T KOG0964|consen 693 EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELG 772 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 3445555555566655554 4556777777777777776665433322221 111122222222222222
Q ss_pred -----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 137 -----------LRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 137 -----------lra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
...+..+..|+.++.-++..+..-|.+|+
T Consensus 773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~ 812 (1200)
T KOG0964|consen 773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE 812 (1200)
T ss_pred HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23355566666666666666666666654
No 127
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.91 E-value=43 Score=34.98 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=104.7
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHH-------HhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRM-------VHYADSFRMDKDVQMREMYDKSVQLEVD 136 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L-------~~~i~~~r~e~Elq~r~l~~k~~K~EaE 136 (300)
..||++|+.=..++..|-.= --..+|..-++-|...+.++..| =.....++.+=--|+.+|.+...+|..+
T Consensus 164 ~~Le~~L~~ie~~F~~f~~l--t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEEL--TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 56888877666665554221 11233444444444444444444 4444444444445677777888888776
Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916 137 LRGVE--AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS 214 (300)
Q Consensus 137 lra~e--~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis 214 (300)
-=.+. .+-.++.+++..+.++...=.+| .+......++.+..+|...-..++.|.++...--+..+.+...|..
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l----~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEALALLKNL----ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44343 36777888888766666666666 7778888888888888888888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHhHH
Q 038916 215 MARELEKLRAEIANSE 230 (300)
Q Consensus 215 MarEvekLRael~n~e 230 (300)
+......|..+++...
T Consensus 318 ~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 318 AKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777765443
No 128
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.76 E-value=62 Score=36.72 Aligned_cols=77 Identities=26% Similarity=0.275 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 147 LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+.|+-....++...-.|| .++|..+..-|.+-.+|+.+.-+-|+.+| +|.+.|--.+.-...-+|.|+..+
T Consensus 469 ~~q~ls~~~Q~~~et~el--~~~iknlnk~L~~r~~elsrl~a~~~elk-------eQ~kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 469 LDQLLSLQDQLEAETEEL--LNQIKNLNKSLNNRDLELSRLHALKNELK-------EQYKTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333 34477778888888889988888887776 777778777777778888888888
Q ss_pred HhHHHH
Q 038916 227 ANSEKR 232 (300)
Q Consensus 227 ~n~ekR 232 (300)
-|.|++
T Consensus 540 ~~lE~E 545 (1195)
T KOG4643|consen 540 GNLEEE 545 (1195)
T ss_pred hhHHHH
Confidence 777664
No 129
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.68 E-value=27 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElr 138 (300)
-|..++|.....+.|+..+..--..+.++-|-|...+-.+..+++++.+
T Consensus 21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq 69 (333)
T KOG1853|consen 21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ 69 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777666643344444444445555556666666555
No 130
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.48 E-value=35 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=14.3
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHh
Q 038916 83 DNQRLAATHVALKQELEVAQYELQRMVH 110 (300)
Q Consensus 83 dNqRLa~~h~aLrqeLaa~~~Elq~L~~ 110 (300)
+|.-|=..-..++.+-...+.|+..|..
T Consensus 35 en~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 35 ENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555553
No 131
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.34 E-value=28 Score=32.65 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+..-+++-..+..+++..|..+..++.++..
T Consensus 98 ~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 98 SERKEEEAEELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666777666666666543
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.02 E-value=6.8 Score=41.66 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhh---hhhhHHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAEN---YEHGQVMEKKLISMAR 217 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~---~eQ~qaMeknlisMar 217 (300)
.....++..++.-+++|....++|. --+..++.+|+.|+.+|.+.+.-+..+.....+- -.-+-.++++|..=..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~--~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELK--RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666652 2356777888888888888888877665443331 1234566677777777
Q ss_pred HHHHHHHHHHhHH
Q 038916 218 ELEKLRAEIANSE 230 (300)
Q Consensus 218 EvekLRael~n~e 230 (300)
+++.|...|+..+
T Consensus 496 ~ve~L~~~l~~l~ 508 (652)
T COG2433 496 RVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776665
No 133
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.99 E-value=50 Score=37.90 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
.|.+++-..+++++-+++.+.....
T Consensus 574 ~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 574 NLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555555544433
No 134
>PRK11519 tyrosine kinase; Provisional
Probab=85.83 E-value=21 Score=38.18 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
...+..++..+.++..+.||++-.+.-+...
T Consensus 359 ~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 359 NGRVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999888877644
No 135
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.50 E-value=15 Score=38.86 Aligned_cols=98 Identities=24% Similarity=0.399 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcc----cHHHHHHHHHHHHHHHHHHHHhhh--hhhchhhhhh-hhHHHH
Q 038916 138 RGVEAMRSELLKVQADIKELTAVRQELT-DLQQ----VPALKAEIENVKQELQRARAAIEF--DKKGYAENYE-HGQVME 209 (300)
Q Consensus 138 ra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQ----v~al~aEl~~lRqEl~r~R~a~e~--Ekk~~~e~~e-Q~qaMe 209 (300)
+.++.|.++|..+..++..+......|+ ..+| +....+++..+.+|+.-...+++. +...|.+.|+ .+.+=+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3355666666666666666666555554 2222 233344444444554444444433 2223333332 344557
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 210 KKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 210 knlisMarEvekLRael~n~ekR~ra 235 (300)
.+|+.++++-|+-|+.|..+-.+++.
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88999999999999999866665554
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.41 E-value=10 Score=33.97 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLA 88 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa 88 (300)
.-+++++.....|+..+...+..|+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~ 94 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELA 94 (194)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 3445555555444444444444333
No 137
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.16 E-value=21 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael 226 (300)
++.+|++...+...+++++..|
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444444443
No 138
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.03 E-value=19 Score=31.31 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~ 189 (300)
..+++++..+..+++.|.+.-..|...--...+..+|..+.+|+.....
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666555554444443111223444444444444444333
No 139
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=84.98 E-value=9.8 Score=28.82 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHhHhhcccHHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELT-AVRQELTDLQQVPALKAEIENVKQELQ 185 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~-a~RqEL~d~qQv~al~aEl~~lRqEl~ 185 (300)
++.+.+-|.||..|++.+. +.|..+ ..+|...+.+|+.++++|.
T Consensus 34 l~ea~~~l~qMe~E~~~~p~s~r~~~--~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 34 LDEAEELLKQMELEVRSLPPSERNQY--KSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 4567777889999999987 677777 4568888888888888875
No 140
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.63 E-value=17 Score=37.18 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
..+.|+|+.+.++|+---.....+.++ -+...+.+..+..+.|.+|+ .|++|..|+..|.=...+...-|
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666664333322222222 22234455555555555544 45555555555544433333333
No 141
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.21 E-value=28 Score=30.50 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHHHhHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916 128 DKSVQLEVDLRGVEAMRS-----ELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY 202 (300)
Q Consensus 128 ~k~~K~EaElra~e~lr~-----El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~ 202 (300)
....+++..++..+.+-+ +-.|+..|.+.|. .+|..=..||..|+.-.....+.++.-|..-....
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~---------~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLN---------EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443 2334444444443 24455566777777777777777777777777778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
.....|+.+|.....++.++|.++..++.
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~ 119 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKK 119 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888876655
No 142
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.88 E-value=12 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=22.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 038916 86 RLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ 122 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq 122 (300)
+|-+...+|+.+|..+.+.+...-.....++.|+|.-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~ 38 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSA 38 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777655554455555555443
No 143
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.72 E-value=46 Score=32.56 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+..+|.|.....|+.+-++++.+|.+.
T Consensus 183 ~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 183 ELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 144
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.65 E-value=35 Score=31.12 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=11.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHH
Q 038916 166 DLQQVPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a 190 (300)
+...+..+..++..+..|+.+..+.
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555444433
No 145
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.63 E-value=1.1e+02 Score=36.83 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhh---hhhhchhhhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIE---FDKKGYAENY-EHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e---~Ekk~~~e~~-eQ~qaMeknlisMarEvekLRael~ 227 (300)
++|-.|.-+|..++.+++..+.-|. -++.....++ -++-+|++++.+.-.++-.++..|+
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556555555555443332 2222222222 2455555555555555544444443
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.59 E-value=25 Score=32.38 Aligned_cols=12 Identities=0% Similarity=0.155 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 038916 97 ELEVAQYELQRM 108 (300)
Q Consensus 97 eLaa~~~Elq~L 108 (300)
.|...++||..|
T Consensus 94 rlp~le~el~~l 105 (206)
T PRK10884 94 RVPDLENQVKTL 105 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 147
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.53 E-value=75 Score=34.91 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHhHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHhH
Q 038916 89 ATHVALKQELEVAQYELQRMVHYADSFRM-DKDVQMREMYDKSVQLEVDLRGVEAMRSE--LLKVQADIKELTAVRQELT 165 (300)
Q Consensus 89 ~~h~aLrqeLaa~~~Elq~L~~~i~~~r~-e~Elq~r~l~~k~~K~EaElra~e~lr~E--l~ql~aE~q~L~a~RqEL~ 165 (300)
.....|++++.....+++.+.... .... ..+.....+..+.-+++..+.....+..+ +.++..+++.+....++|.
T Consensus 494 ~~~~~l~~e~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~ 572 (908)
T COG0419 494 KEEAELREEIEELEKELRELEEEL-IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK 572 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666665555333 1112 22222334444555555555555555555 4555555555555555543
No 148
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.42 E-value=74 Score=34.72 Aligned_cols=138 Identities=19% Similarity=0.306 Sum_probs=83.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHH----HHHHHHHHHHHHHHHHH--
Q 038916 86 RLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEA----MRSELLKVQADIKELTA-- 159 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~----lr~El~ql~aE~q~L~a-- 159 (300)
.|-.+-..||-+|.....|+..-..-+..---..|.-.|.+.-...+.+..+..++. +|. |++.-...+..
T Consensus 538 ~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK---qvEnk~K~ieeLq 614 (786)
T PF05483_consen 538 NLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK---QVENKNKNIEELQ 614 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHhHHHHHH
Confidence 344444445555555555554433211211123444555555555555555543322 222 12222222222
Q ss_pred -----HHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 160 -----VRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 160 -----~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
++..++ +..|+..+--.|..++-|+..+...++-+-..+..+++--.+.+.+|. -||+|++...+-|
T Consensus 615 qeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k~~a~EA 687 (786)
T PF05483_consen 615 QENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHH
Confidence 222333 667888888888999999999999999999999999998888887765 5899999877655
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.37 E-value=30 Score=30.25 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=14.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916 86 RLAATHVALKQELEVAQYELQRMVHYA 112 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~Elq~L~~~i 112 (300)
++...-..+++.+...++|+..+...+
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666665554333
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.36 E-value=73 Score=34.61 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhch----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGY----AENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~----~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+..+++-|+.++.-+..++..++..++.. .=.-.|++.+...|-.+..+|..+-.+|-+-+|.
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677777766666666665443322 2234688999999999999999999998776654
No 151
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.06 E-value=22 Score=38.82 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 038916 208 MEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~e 230 (300)
|.+.=+.+...+|+||.+++--+
T Consensus 235 ~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 235 MRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333344445566666665444
No 152
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.93 E-value=35 Score=34.97 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAREL 219 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEv 219 (300)
...+.+++..++++.+.+.+.-++.+ --+..|+.|...++.|..+.+++.++ +..++.+....+--+..=-+|+
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E--~~l~~Lq~e~~~l~e~~v~~~a~~~~----~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKE--LELNRLQEENTQLNEERVREEATEKT----LTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444332 12445566666666666665554443 2333333333333333333444
Q ss_pred HHHHHHHHhH
Q 038916 220 EKLRAEIANS 229 (300)
Q Consensus 220 ekLRael~n~ 229 (300)
.+-++++.|+
T Consensus 103 ~~q~~e~~n~ 112 (459)
T KOG0288|consen 103 REQKAEFENA 112 (459)
T ss_pred HHhhhhhccc
Confidence 4444444443
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.90 E-value=34 Score=32.05 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 149 KVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 149 ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae 225 (300)
..+.|...|...|...+ +++||-.++-.|+++=++....|..+... +.-+..++.-+..||.++|.+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~----------i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK----------IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443 44666666666666555444433332222 223334555666666666666
No 154
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=82.86 E-value=0.8 Score=41.00 Aligned_cols=33 Identities=39% Similarity=0.473 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEV 100 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa 100 (300)
++||++| .|-..|..++|||-+.---|+|||.+
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V 49 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQELIV 49 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH----------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889888 67788999999998877777777733
No 155
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.52 E-value=76 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 038916 87 LAATHVALKQELEVAQYEL 105 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~El 105 (300)
+.++...|+.++.-.+++|
T Consensus 739 ~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 156
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.16 E-value=10 Score=34.87 Aligned_cols=58 Identities=31% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
.|.++|+.++|-+-..+..|+..|..+.+-=+---.+.+.+.++..+++-+|.++++-
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888889999887665544444489999999999999999998754
No 157
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.91 E-value=89 Score=35.12 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh---hhhhhchhhhhhhhHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAI---EFDKKGYAENYEHGQVMEKKLISMA 216 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~---e~Ekk~~~e~~eQ~qaMeknlisMa 216 (300)
+..+.+.+..+++++..++..+ ....+...+...+...+.+.+....
T Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 873 (1047)
T PRK10246 824 VEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQAT 873 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555544433 2233333444444444444444444
No 158
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.69 E-value=88 Score=34.40 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=46.5
Q ss_pred hhhhhhhhHHHHHHHHHHH------HHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHH
Q 038916 112 ADSFRMDKDVQMREMYDKS------VQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ 185 (300)
Q Consensus 112 i~~~r~e~Elq~r~l~~k~------~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~ 185 (300)
+..+|-|+|..+.+.+.+. .|+|=|.+ +..+..+|..+.+|.-.|...- .+-+.+=.||.
T Consensus 61 lr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~-l~e~~~~l~~~~~e~~~l~~~l-------------~~~~~~i~~l~ 126 (769)
T PF05911_consen 61 LRQVREEQEQKIHEAVAKKSKEWEKIKSELEAK-LAELSKRLAESAAENSALSKAL-------------QEKEKLIAELS 126 (769)
T ss_pred HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHHHHHH
Confidence 4455567777766655543 22222222 3444445555555544444322 33334444455
Q ss_pred HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
..++..+.|. ......+.++||+.-+++-|+.-+--||
T Consensus 127 ~~~~~~e~~~---~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 127 EEKSQAEAEI---EDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554 2223334455555555555555544444
No 159
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.53 E-value=5.2 Score=42.50 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038916 147 LLKVQADIKELTAVRQEL 164 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL 164 (300)
+.-+.-|+.+|++-||||
T Consensus 88 ~~sVs~EL~ele~krqel 105 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQEL 105 (907)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555566666666
No 160
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.22 E-value=36 Score=35.32 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael 226 (300)
+..+++.+.....++.++-.+|
T Consensus 348 le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 161
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.04 E-value=64 Score=32.40 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 201 NYEHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 201 ~~eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
-.+++...+.++.....++++++..+.+..
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 344455555566666666666666554443
No 162
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.87 E-value=85 Score=33.69 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.-.+|.-|-.++++.+++..-|. .....|++++|+.+.+-..|+++|+..+.
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~---e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEER---EKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666665555 45566888888888888888888877663
No 163
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.79 E-value=76 Score=34.03 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 154 IKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH-GQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 154 ~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ-~qaMeknlisMarEvekLRael~n~ 229 (300)
.-.+..+-.||. +.+.|..+..|.+.++++++.+-.-...+|.-..+.+.+ .--|++.+--+..+|+++++.+.++
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666 445688999999999999988766666653222221111 1124555555555555555555443
No 164
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.68 E-value=58 Score=35.52 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=17.4
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
.++-+-..||-||...+..|+.+......+..+|.
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr 82 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLR 82 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444444444
No 165
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.55 E-value=17 Score=35.43 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 204 HGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n 228 (300)
|+..-++.|+.+.+||-+|+.+|+.
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777777777763
No 166
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=16 Score=39.06 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=48.0
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------DLQQVPALKAEIENVKQELQRARAAIEFDKKG 197 (300)
Q Consensus 126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~--------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~ 197 (300)
+-.+.-+++.|.+ .|+.++.++..++.+|.+-..++. -...+.++..+|+.|+.+|+.....++. +++
T Consensus 427 ~~~~ve~l~~e~~---~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~-L~~ 502 (652)
T COG2433 427 LEETVERLEEENS---ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE-LER 502 (652)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3333444444433 455566666666555555444443 2234788888888899888887777663 445
Q ss_pred hhhhhhhhHHHH
Q 038916 198 YAENYEHGQVME 209 (300)
Q Consensus 198 ~~e~~eQ~qaMe 209 (300)
....+.+++.||
T Consensus 503 ~l~~l~k~~~lE 514 (652)
T COG2433 503 KLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHhhh
Confidence 555566666665
No 167
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=80.16 E-value=48 Score=30.40 Aligned_cols=92 Identities=25% Similarity=0.294 Sum_probs=57.7
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc----hhh
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG----YAE 200 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~----~~e 200 (300)
.|-.++.++++-+| ++.+++.-|+||++.|.++ | -++.+..+|..|+.|...-|--+..=|.+ ..+
T Consensus 83 ~ld~~i~~l~ek~q---~l~~t~s~veaEik~L~s~---L----t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe 152 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQ---SLQQTCSYVEAEIKELSSA---L----TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE 152 (201)
T ss_pred HHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---c----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 34556677776555 6777888888888877664 2 44455555555555444333333322222 246
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 201 NYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 201 ~~eQ~qaMeknlisMarEvekLRael 226 (300)
+.+|+.-|-....+|=+...+.-.+|
T Consensus 153 dk~~v~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 153 DKEQVYREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887776665
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.00 E-value=1.1e+02 Score=34.56 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=72.9
Q ss_pred HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH-----Hhh---------hhhH
Q 038916 76 DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLE-----VDL---------RGVE 141 (300)
Q Consensus 76 Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~E-----aEl---------ra~e 141 (300)
|+.+.-..|.-|-.-..-|-+..+..++||++-.........-+|-..+++.|-.--|| .|+ ..++
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve 335 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE 335 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555555444444444445544554444332222 221 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----hh-----cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHH
Q 038916 142 AMRSELLKVQADIKELTAVRQELT----DL-----QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL 212 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~----d~-----qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknl 212 (300)
.+++.+.-|+.| |+-+|.|+. |. -|+--|-..-+.|+.=|.|.|-....||.-......-+-....++
T Consensus 336 ~lkEr~deletd---lEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 336 ALKERVDELETD---LEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 444444444443 344555555 11 123334444456677777777777777744443333333333444
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 038916 213 ISMARELEKLRAEIANSEK 231 (300)
Q Consensus 213 isMarEvekLRael~n~ek 231 (300)
..+.+--|+|-.+++++|.
T Consensus 413 ~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 413 EELRRQKERLSRELDQAES 431 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666654
No 169
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.80 E-value=59 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038916 93 ALKQELEVAQYELQRMVHY 111 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~~~ 111 (300)
.|..++..++.||+-|++|
T Consensus 92 ~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 92 QLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 170
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.68 E-value=62 Score=32.26 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=70.9
Q ss_pred HHHHHHHHhhhh-hhhhhhHHHHHHHHHHHHHhHHhhhhh-HHHHHHHHHHHHHHHHHH----HHHHHhHhhcccHH---
Q 038916 102 QYELQRMVHYAD-SFRMDKDVQMREMYDKSVQLEVDLRGV-EAMRSELLKVQADIKELT----AVRQELTDLQQVPA--- 172 (300)
Q Consensus 102 ~~Elq~L~~~i~-~~r~e~Elq~r~l~~k~~K~EaElra~-e~lr~El~ql~aE~q~L~----a~RqEL~d~qQv~a--- 172 (300)
+.|+.|+.-... .++++. =.-|.+++...++...+.+. ..++..|.+++.|+.+-. +--+=| +.|+.-
T Consensus 197 klEvERV~PqLKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i--N~qle~l~~ 273 (359)
T PF10498_consen 197 KLEVERVLPQLKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI--NNQLEPLIQ 273 (359)
T ss_pred HHHHHHHhhhheeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHH
Confidence 345555543332 223332 22667777777777776655 447777777777665421 111111 223333
Q ss_pred ----HHHHHH---HHHHHHHHHHHHhhhhhhchhhhhhhhHH-HHH---------HHHHHHHHHHHHHHHHHhHHHH
Q 038916 173 ----LKAEIE---NVKQELQRARAAIEFDKKGYAENYEHGQV-MEK---------KLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 173 ----l~aEl~---~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qa-Mek---------nlisMarEvekLRael~n~ekR 232 (300)
.+.+|. .-.++++..++..+.+++.-.+.++|++. |+. -|+.+++=|.||+.||..-+-|
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333 33334445555666677777777777764 332 3778888888888888765544
No 171
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.62 E-value=1.1e+02 Score=34.27 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=62.2
Q ss_pred HHHHHHHHHhHHHHHhhhhhccc----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh---h--------hHHH--HHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQR----LAATHVALKQELEVAQYELQRMVHYADSFRM---D--------KDVQ--MREM 126 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqR----La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~---e--------~Elq--~r~l 126 (300)
..||+.|.+...||+++..|-+- |..-..-+.+.|+.+-.|=..|-.-....+- + ++.+ .+.+
T Consensus 151 h~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~v 230 (1265)
T KOG0976|consen 151 HKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKV 230 (1265)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 45777777777777776655433 3333333333333333222211100111110 0 1112 4556
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH---------------hhcc----cHHHHHHHHHHHHHHHHH
Q 038916 127 YDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT---------------DLQQ----VPALKAEIENVKQELQRA 187 (300)
Q Consensus 127 ~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~---------------d~qQ----v~al~aEl~~lRqEl~r~ 187 (300)
..+.++|-...+-++++|..+..++--..-|.+.-.||. ++.| |..+..||+.++|=-.++
T Consensus 231 l~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a 310 (1265)
T KOG0976|consen 231 LKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA 310 (1265)
T ss_pred HHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666665555555555555555444 1222 666777777777754444
Q ss_pred HH
Q 038916 188 RA 189 (300)
Q Consensus 188 R~ 189 (300)
-.
T Consensus 311 ~g 312 (1265)
T KOG0976|consen 311 DG 312 (1265)
T ss_pred hc
Confidence 33
No 172
>PF15294 Leu_zip: Leucine zipper
Probab=79.17 E-value=53 Score=31.88 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
.+.++|+.++.+...||-+....+..++|=+
T Consensus 215 ~~~k~L~e~L~~~KhelL~~QeqL~~aekeL 245 (278)
T PF15294_consen 215 SQQKALEETLQSCKHELLRVQEQLSLAEKEL 245 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhcchhhH
Confidence 3788888888888888888888887776643
No 173
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=79.12 E-value=43 Score=29.20 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=56.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh-hcccHHHHHHHH-HHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 134 EVDLRGVEAMRSELLKVQADIKELTAVRQELTD-LQQVPALKAEIE-NVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 134 EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d-~qQv~al~aEl~-~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
..+|..++..-.++.+...++..+...=++.-. .+........+. ....+|.+.. .+-+|+ ......++++.+...
T Consensus 35 ~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~-~~~~e~-~i~~~~~~I~~Lq~~ 112 (146)
T PF08702_consen 35 DKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI-IYILET-KIINQPSNIRVLQNI 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH-HHHHHH-HHhhhHhHHHHHHHH
Confidence 344455555556667777777776655555421 111101111121 2233333322 445554 778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 038916 212 LISMARELEKLRAEIANS 229 (300)
Q Consensus 212 lisMarEvekLRael~n~ 229 (300)
+.+..++|+||-..|+.-
T Consensus 113 ~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 113 LRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998743
No 174
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.03 E-value=44 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=7.5
Q ss_pred hhhhhhhHHHHHHHHHH
Q 038916 199 AENYEHGQVMEKKLISM 215 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisM 215 (300)
.+++++...|.++..++
T Consensus 171 ~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 171 QENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 175
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.30 E-value=57 Score=30.19 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 038916 220 EKLRAEIA 227 (300)
Q Consensus 220 ekLRael~ 227 (300)
++||+.++
T Consensus 134 ~~L~~~l~ 141 (251)
T PF11932_consen 134 ARLRAMLD 141 (251)
T ss_pred HHHHHhhh
Confidence 44444443
No 176
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.11 E-value=10 Score=34.24 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038916 172 ALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~E 194 (300)
.+.++++.++.++......++..
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 177
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.03 E-value=1.1e+02 Score=34.70 Aligned_cols=15 Identities=7% Similarity=0.490 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 038916 177 IENVKQELQRARAAI 191 (300)
Q Consensus 177 l~~lRqEl~r~R~a~ 191 (300)
|..+++++..+..+.
T Consensus 313 ~~~~~~~v~~~~~~l 327 (1072)
T KOG0979|consen 313 LKEIEDEVEEKKNKL 327 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 178
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.60 E-value=64 Score=32.37 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=72.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhHHH-HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRM------DKDVQ-MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTA 159 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~------e~Elq-~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a 159 (300)
+...-...+.+.+.+..-+..+.....+.+. .-+-. +..|..+...+...+. .+..++.-.+..+..+.+
T Consensus 244 ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~---~l~~~~~~~~p~~~~~~~ 320 (458)
T COG3206 244 LNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIA---DLSTELGAKHPQLVALEA 320 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHH---HHHHhhcccChHHHhHHH
Confidence 5555666677777777777777776666662 12222 4444444444433333 222222222333333333
Q ss_pred HHHHhH-----hhcc-cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 160 VRQELT-----DLQQ-VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 160 ~RqEL~-----d~qQ-v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
...++. +.++ +.....+++.++ ...++++.+++.....+......+.+|..+.||++-.|.-++..
T Consensus 321 q~~~~~~~~~~e~~~~~~~~~~~~~~l~----~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 321 QLAELRQQIAAELRQILASLPNELALLE----QQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETL 392 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHH----HHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333331 1122 122233333333 34456666666667777777888888888888888888877644
No 179
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.55 E-value=51 Score=29.26 Aligned_cols=93 Identities=14% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHhHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhHhhcccHHHHHH-HHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 128 DKSVQLEVDLRGVEAMRSELLKVQADIKE-LTAVRQELTDLQQVPALKAE-IENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 128 ~k~~K~EaElra~e~lr~El~ql~aE~q~-L~a~RqEL~d~qQv~al~aE-l~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
++..+++.++.+.+..++|+..+.++.++ |..+|+|. ..+++| .+.+..|.-..|.+++.+++.
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA------~~I~~e~~~~~~a~~~~~~~~~ea~L~~-------- 106 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEI------DRLKKEKIDSLESEFLIKKKNLEQDLKN-------- 106 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34455666666666666666666555432 33444444 233344 555666666667777776643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
.++.|+..|-..++++|.+..-+=+....
T Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 135 (155)
T PRK06569 107 -SINQNIEDINLAAKQFRTNKSEAIIKLAV 135 (155)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45556666666666666666554444433
No 180
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.45 E-value=17 Score=38.84 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 174 KAEIENVKQELQRARAAI---EFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 174 ~aEl~~lRqEl~r~R~a~---e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+++|+.|+.|....++.+ +-..... ..-++ -..+..+.+|+..|+++|+.++||
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~---~~~~p--~~~~~~~~~e~~~l~~~~~~~ekr 621 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQP---VDAVP--TSSLESQEKEIAELKAELASAEKR 621 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC---ccccc--chhhhhhHHHHHHHHHHHHHHHHH
Confidence 577888888888888777 2222111 11111 244667777888888888888773
No 181
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.29 E-value=36 Score=35.30 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRa 224 (300)
+.|.-||.|..-+-++|||+.
T Consensus 355 krqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 355 KRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 456677777777777777763
No 182
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=77.26 E-value=34 Score=27.09 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.-|...+.++|...-.+.+++...+.
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888888887765
No 183
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.11 E-value=69 Score=36.33 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHH
Q 038916 138 RGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAR 217 (300)
Q Consensus 138 ra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMar 217 (300)
..++.++.++.++..........+++|. .....++.+|+.--+||-..-..+..=+..-.+.-+=++.|++.-....+
T Consensus 455 ~el~~~~~~l~~~~e~~~~~~~~~~~l~--~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~ 532 (1041)
T KOG0243|consen 455 EELENLEKQLKDLTELYMNQLEIKELLK--EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVD 532 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666662 23455555555555555543333322221111111224444555444444
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 038916 218 ELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 218 EvekLRael~n~ekR~ra~~ 237 (300)
-..+||..++.+.+....-+
T Consensus 533 ~a~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 533 RATKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766544
No 184
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=77.05 E-value=78 Score=34.03 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
+...|..+.++.+.|+..-..|-..+..|.++|...-+|+....
T Consensus 302 v~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~ 345 (632)
T PF14817_consen 302 VHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRL 345 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444556666666666666666666666666666665553
No 185
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=76.94 E-value=67 Score=30.27 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 207 aMeknlisMarEvekLRael~ 227 (300)
..+.++......++.....+.
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 186
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.80 E-value=38 Score=27.33 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 038916 145 SELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 145 ~El~ql~aE~q~L~a~RqEL~ 165 (300)
..+.++.+++.....+..||+
T Consensus 20 ~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 20 VQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.48 E-value=43 Score=34.28 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
.+....+..+..+.+++++|+.+|...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666666666777776666533
No 188
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.38 E-value=40 Score=32.76 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
....-....++..+..|.+.+-+.+.+.
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 189
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=76.32 E-value=96 Score=34.08 Aligned_cols=102 Identities=13% Similarity=0.212 Sum_probs=55.8
Q ss_pred chHHHHHHHHHhHHHHHhh-hhhccchhhhHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916 62 HPAIIEEHLAAQHQDIQGL-LADNQRLAATHVALKQELEVAQYELQR-MVHYADSFRMDKDVQMREMYDKSVQLEVDLRG 139 (300)
Q Consensus 62 p~~~lEe~la~Q~~Ei~~L-~~dNqRLa~~h~aLrqeLaa~~~Elq~-L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra 139 (300)
|..=||++++.-..||-.- =..| -..|.+|.+.+.-.++|+.. ++.+.....+.. |.
T Consensus 430 ~~~~Le~elekLk~eilKAk~s~~---~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~---------kL--------- 488 (762)
T PLN03229 430 PVRELEGEVEKLKEQILKAKESSS---KPSELALNEMIEKLKKEIDLEYTEAVIAMGLQE---------RL--------- 488 (762)
T ss_pred CCccHHHHHHHHHHHHHhcccccC---CCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHH---------HH---------
Confidence 3366888888888777654 2233 34567777777777777732 332222222222 22
Q ss_pred hHHHHHHHHHHHH-------HH-HHHHHHHHHhH----hhcccHHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQA-------DI-KELTAVRQELT----DLQQVPALKAEIENVKQELQ 185 (300)
Q Consensus 140 ~e~lr~El~ql~a-------E~-q~L~a~RqEL~----d~qQv~al~aEl~~lRqEl~ 185 (300)
+-||.|+.++.+ .+ .++..+++|+. +.---|.|+..++.|+.+..
T Consensus 489 -~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 489 -ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred -HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 222333333222 11 13566666663 33334678999999988773
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.15 E-value=13 Score=33.32 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael~n~ekR~r 234 (300)
-+.++.+.+.+..+.-|+.-|..++.-.++|.+
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677766666665555443
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.07 E-value=64 Score=29.59 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+..+++.|...+..|......++...+...+....+...+..+..+...+.+-|..+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 93 LEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555522222222222222222333334444444455555544444
No 192
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.18 E-value=31 Score=33.67 Aligned_cols=89 Identities=17% Similarity=0.309 Sum_probs=66.3
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh-----hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 131 VQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTD-----LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 131 ~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d-----~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
.-++.+- +++.||.+|..++.-.++....-+-|.+ +.||.-|+.+|+.+...+.-.+..|. ||.+- .
T Consensus 71 sS~dse~-s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~-eK~~e------l 142 (302)
T PF09738_consen 71 SSVDSEA-SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR-EKIRE------L 142 (302)
T ss_pred ccccccc-cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------H
Confidence 3444444 5667788888888877777777777752 46799999999999998888777774 45332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~ 227 (300)
..++..+..+..|+.-||.+|.
T Consensus 143 Er~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999985
No 193
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=75.14 E-value=57 Score=32.56 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 038916 148 LKVQADIKELTAVRQELT 165 (300)
Q Consensus 148 ~ql~aE~q~L~a~RqEL~ 165 (300)
..+-.|+++|.-++.-||
T Consensus 88 ~~it~dIk~LD~AKrNLT 105 (383)
T PF04100_consen 88 QEITRDIKQLDNAKRNLT 105 (383)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666666
No 194
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=75.07 E-value=1.2e+02 Score=32.10 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh-H
Q 038916 63 PAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV-E 141 (300)
Q Consensus 63 ~~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~-e 141 (300)
..+|+++..+-..=+..|..+-.-|-+..++|..+|..+.+.| ..-+.+++.|.+=-.+...+++.....|+.+- .
T Consensus 339 ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL---~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~ 415 (531)
T PF15450_consen 339 LDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTL---NLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLK 415 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888877777777788888888888899999998887776 44477778888888888999988887777643 6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhHhhc---ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 142 AMRSELLKVQADIKELTAV----RQELTDLQ---QVPALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~----RqEL~d~q---Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
.|++.+.++-.+|..|..- +-++ |.+ -..+..-+|..+|+||...-+.+-+-|-.+..
T Consensus 416 ~v~eKVd~LpqqI~~vs~Kc~~~Ksd~-d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 416 EVQEKVDSLPQQIEEVSDKCDLHKSDS-DTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 6777777777776665432 2222 111 13566778899999999988888887666555
No 195
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.93 E-value=83 Score=31.68 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 038916 146 ELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL~ 165 (300)
|.+++.-|+.+-.+..|+|.
T Consensus 163 esq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 163 ESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666665
No 196
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=74.81 E-value=33 Score=27.64 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
.....++..+.+-+.+.-+-++.+.+.|.+
T Consensus 20 ~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa 49 (96)
T PF08647_consen 20 DKKVKELTILEQKKLRLEAEKAKADQKYFA 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 197
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.62 E-value=66 Score=29.07 Aligned_cols=96 Identities=17% Similarity=0.326 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhHHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHH--------
Q 038916 123 MREMYDKSVQLEVDLRGVEA-------MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRA-------- 187 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~-------lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~-------- 187 (300)
+-+|-+-+.+||.|-+-.+. +|+.+.+++...+.| ..|| ..+..++..+++||...
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L---~~dl------~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEAL---QEDL------QKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555577788888777777 555555555433333 2333 22333333333333333
Q ss_pred ---HHHhhhhhhchhhhhhhhHHHHHHHHHHHHH----HHHHHHHHH
Q 038916 188 ---RAAIEFDKKGYAENYEHGQVMEKKLISMARE----LEKLRAEIA 227 (300)
Q Consensus 188 ---R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE----vekLRael~ 227 (300)
-.-|.-|-++....-.|+.++...+-.|+.. +.++|+||+
T Consensus 130 ~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 130 ENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333344444555556666666666665543 334555553
No 198
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=74.50 E-value=93 Score=30.75 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~ 227 (300)
++...+.++.....++.+++..+.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778889999999999999986
No 199
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=74.40 E-value=13 Score=31.51 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ekR~ra 235 (300)
-.++|..-..|+.+||+.|..-.||++-
T Consensus 40 ~tkEL~~Ak~e~~~Lr~dl~aG~~RL~v 67 (125)
T PF03245_consen 40 YTKELADAKAEIDRLRADLAAGNKRLRV 67 (125)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCceEEE
Confidence 3467788889999999999999998873
No 200
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=74.27 E-value=83 Score=32.12 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHH-----------HHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAE-----------IENVKQELQRARAAIEFDKKGYAENYEHGQVME 209 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aE-----------l~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMe 209 (300)
+.||..+.++..|.-.|...+-|++- -+.+-... -..++-|-.++-+-.=.|| +..-....+++
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~e~--~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK---aaLrkerd~L~ 362 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEAEQ--GLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK---AALRKERDSLA 362 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45666666666666666666666641 11111111 1134444444444444444 44445566778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 210 KKLISMARELEKLRAEIA 227 (300)
Q Consensus 210 knlisMarEvekLRael~ 227 (300)
|+|+.-.||+|.|+.+++
T Consensus 363 keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 363 KELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887775
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.17 E-value=1.2e+02 Score=33.93 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 68 EHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYAD 113 (300)
Q Consensus 68 e~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~ 113 (300)
|....|..|+.+++.+|++|-..-.-|..+|.--...++-+.+...
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 4445666777777777777776666677777666666666654444
No 202
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.60 E-value=71 Score=30.89 Aligned_cols=45 Identities=16% Similarity=0.343 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+..+.+++..++.+|...++ .+.++.=+++.++..+.++.+.|++
T Consensus 216 i~~L~~~l~~~~~~l~~l~~-------~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRS-------ITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hCCCCCCchHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 3334344444444444444444433
No 203
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.59 E-value=77 Score=29.36 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchh----hhhhhhHHHHHHHHHH
Q 038916 155 KELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYA----ENYEHGQVMEKKLISM 215 (300)
Q Consensus 155 q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~----e~~eQ~qaMeknlisM 215 (300)
+.+..++++....+++..+...++..++++..+...++.-...+. .-+++.|.||.+=+..
T Consensus 137 ~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~ 201 (261)
T cd07648 137 LELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQ 201 (261)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433345667777777777888777777765444433 3445667777664433
No 204
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.34 E-value=79 Score=29.42 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHH----HHHHHHHHHHHHHH-HHHHHHhHhhcccHHHHHHHHHHHHHHHHH
Q 038916 119 KDVQMREMYDKSVQLEVDLRGVEAM----RSELLKVQADIKEL-TAVRQELTDLQQVPALKAEIENVKQELQRA 187 (300)
Q Consensus 119 ~Elq~r~l~~k~~K~EaElra~e~l----r~El~ql~aE~q~L-~a~RqEL~d~qQv~al~aEl~~lRqEl~r~ 187 (300)
.||+.|.+...-...|.|+++.+.+ ++.+..-+.+.+.| ..++..| ..-..+|..+|.=|..+
T Consensus 137 ~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L------~~~~~kL~Dl~~~l~eA 204 (264)
T PF06008_consen 137 EEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDL------NDYNAKLQDLRDLLNEA 204 (264)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 4555455455555555555555443 33333334444444 3334333 33344444555444443
No 205
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.34 E-value=1.6e+02 Score=32.45 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=80.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 86 RLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.+......+...+...+..+++|.....++.-....... .......++..+..+..+.+.+..+..++..+.....+|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 349 (908)
T COG0419 271 IREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349 (908)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777666655544333322 3344444444444444444555555554444444444442
Q ss_pred h-------h---------cccHHHH-------HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 166 D-------L---------QQVPALK-------AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 166 d-------~---------qQv~al~-------aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
+ . .++..+. .-+..+..+++...+....-..+..+..++....++++....++++++
T Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 429 (908)
T COG0419 350 EEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEEL 429 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0011111 222234444445555555555566666777777778888888888888
Q ss_pred HHHHHhHHHHHH
Q 038916 223 RAEIANSEKRAR 234 (300)
Q Consensus 223 Rael~n~ekR~r 234 (300)
+..+.+.+....
T Consensus 430 ~~~~~~~~~~~~ 441 (908)
T COG0419 430 EEEIKKLEEQIN 441 (908)
T ss_pred HHHHHHHHHHHH
Confidence 888776655443
No 206
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.28 E-value=53 Score=30.79 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
..+.++++.++.|+...-..++-..+...+.-.|....-++++-+.-|.++||..|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34455555555555554444443333333333333333333344444444444443
No 207
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.31 E-value=1.1e+02 Score=32.19 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHhh
Q 038916 123 MREMYDKSVQLEVDL 137 (300)
Q Consensus 123 ~r~l~~k~~K~EaEl 137 (300)
+-.+..+..++|.++
T Consensus 393 ~~~~~~~~~~~e~el 407 (650)
T TIGR03185 393 KSQLLKELRELEEEL 407 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 208
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.15 E-value=1.7e+02 Score=32.29 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHH--------------HH
Q 038916 150 VQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVM--------------EK 210 (300)
Q Consensus 150 l~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaM--------------ek 210 (300)
+..++.++.+.+.+|. -.+++..++..|..+.+-|...+..++.=++.+..--.|+++| +.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444443 1245555555555555555555555555555555555566666 78
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 038916 211 KLISMARELEKLRAEIANS 229 (300)
Q Consensus 211 nlisMarEvekLRael~n~ 229 (300)
++..+..-|..|-.+|..+
T Consensus 674 E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888755
No 209
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.69 E-value=1.4 Score=46.96 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 198 YAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 198 ~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
..+.+.+++.||+....+..|+.+||.-..|.
T Consensus 252 l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~ 283 (722)
T PF05557_consen 252 LKEQLAHIRELEKENRRLREELKHLRQSQENV 283 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566777788888888888888888765544
No 210
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.54 E-value=1.1e+02 Score=31.42 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
++.+...=|..|+.||...++.+..=+.....+-=|++.++..|.++.++|.+.|+.+.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666666665555543333466778999999999999999999998885
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.02 E-value=84 Score=28.66 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRae 225 (300)
.++..++..|..|.+.|+.+++.
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 212
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.92 E-value=70 Score=30.01 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=4.5
Q ss_pred hhhhhhchhhhh
Q 038916 191 IEFDKKGYAENY 202 (300)
Q Consensus 191 ~e~Ekk~~~e~~ 202 (300)
+..|+..+.+.|
T Consensus 44 L~~Er~~h~eeL 55 (230)
T PF10146_consen 44 LLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.87 E-value=1e+02 Score=29.32 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
++++.+-+.++=.+..+.+.+.+.+.+-+.++++...+.+|=
T Consensus 43 ~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek 84 (246)
T KOG4657|consen 43 MNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEK 84 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555665566666666666666666666666655554
No 214
>PRK11519 tyrosine kinase; Provisional
Probab=69.68 E-value=1e+02 Score=33.07 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLR 223 (300)
+..+-++.+..+-+=.+.++
T Consensus 378 e~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 378 DVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555554444444
No 215
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.09 E-value=40 Score=25.94 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRAR 188 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R 188 (300)
..|++|++.+++||.+.|
T Consensus 50 ~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 50 NKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455666666666665544
No 216
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.94 E-value=61 Score=29.73 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.3
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916 82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118 (300)
Q Consensus 82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e 118 (300)
.-|..|-.....|+.+|...+++|+.++..-...+.+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~ 172 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777778888888888887777555444443
No 217
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.92 E-value=47 Score=34.34 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=47.4
Q ss_pred HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHH-HHHHHHHHHHhHHhhhhhHHHHHHH
Q 038916 77 IQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD--KDVQ-MREMYDKSVQLEVDLRGVEAMRSEL 147 (300)
Q Consensus 77 i~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e--~Elq-~r~l~~k~~K~EaElra~e~lr~El 147 (300)
+|.|-.+|.+|-....-|+--..-...|.|+++..+..+++. -|++ .+.+.++.++.+.|-.+...|-.|+
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieel 379 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEEL 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666777777777777777777777888888777777763 2222 4446777777777777665555543
No 218
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.87 E-value=1.5e+02 Score=30.99 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~e 230 (300)
.|+.=|.=++..|++.+..|....
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444445556667777777776443
No 219
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.66 E-value=1e+02 Score=32.95 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh--------hHHH--HHHHHHHHHHhHHhhhhh----HHHHHHHHHHHHHHHHHHH
Q 038916 96 QELEVAQYELQRMVHYADSFRMD--------KDVQ--MREMYDKSVQLEVDLRGV----EAMRSELLKVQADIKELTA 159 (300)
Q Consensus 96 qeLaa~~~Elq~L~~~i~~~r~e--------~Elq--~r~l~~k~~K~EaElra~----e~lr~El~ql~aE~q~L~a 159 (300)
+++..-..|.+.|...|..++.+ .+++ +..|...+.|...+|..+ +.-++|+.+|++++.+...
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888874 3333 667777888888877754 4557788888887766443
No 220
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=68.63 E-value=72 Score=26.98 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=29.2
Q ss_pred HHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHH
Q 038916 70 LAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQ 106 (300)
Q Consensus 70 la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq 106 (300)
|-.|..+|+|||.-+.--+...+.++++|.+-+.++.
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~ 38 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELE 38 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4467789999997774446667899999999998883
No 221
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=68.62 E-value=42 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.380 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQ 182 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRq 182 (300)
++.||.|...+-.|+..+...+.|+. .+|..=.+|++.+|+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e--~ki~~Qi~Em~~ir~ 46 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYE--HKINSQIQEMQQIRQ 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHH
Confidence 46677777777777766666666663 124444555555554
No 222
>PRK10869 recombination and repair protein; Provisional
Probab=68.39 E-value=1.4e+02 Score=31.32 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRae 225 (300)
+++..+++++...+.++-+.|-.
T Consensus 348 ~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 348 LAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 223
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.28 E-value=1.7e+02 Score=31.20 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHH
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQ 106 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq 106 (300)
-.+++...+..|++.|-..-+.|......++.++..-.-++.
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~ 359 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLK 359 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665554444444444444444444443333
No 224
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.24 E-value=1e+02 Score=33.09 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHH
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSE 146 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~E 146 (300)
..|+++|..++..|+....--.-+-. +.+...+++++..+++++..++...++
T Consensus 277 ~~l~~~L~~aE~~l~~fr~~~~~~d~--~~ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 277 PEVRSELDQAEEKLNVYRQQRDSVDL--NLEAKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555421111111 233445566667777666555444443
No 225
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=67.47 E-value=2.2e+02 Score=32.11 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+.....+|+..=.|+++++..++- .+-++......|+.++.....|+++|--.+
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~---K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAET---KTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444555554444321 122333444455555555555555554443
No 226
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=67.44 E-value=1.6e+02 Score=30.65 Aligned_cols=111 Identities=13% Similarity=0.271 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHHhhhhh-HH-HHH-HHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchh
Q 038916 123 MREMYDKSVQLEVDLRGV-EA-MRS-ELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYA 199 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~-e~-lr~-El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~ 199 (300)
...++.++..+..|+..+ .. +-+ -..+++.-..++..+++||..+..+-.+...|..+.+-|...+.+++.. .+.
T Consensus 48 ~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~--~~~ 125 (593)
T PF06248_consen 48 AKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEG--NYL 125 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHH
Confidence 334455555566555222 11 111 1233444445566667777666666666666666666666555554432 233
Q ss_pred hhhhhhHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 200 ENYEHGQVMEKK--------------LISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 200 e~~eQ~qaMekn--------------lisMarEvekLRael~n~ekR~ra 235 (300)
+-.+.+..+++- +-.+..|+..+|..|.+.=-..|-
T Consensus 126 ~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~ 175 (593)
T PF06248_consen 126 DAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWE 175 (593)
T ss_pred HHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 345677888888888766544444
No 227
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.34 E-value=1.5e+02 Score=32.40 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 208 MeknlisMarEvekLRael~ 227 (300)
-++.+....+++.+++..+.
T Consensus 605 ~~~~~~~~~~~l~~~~~~~~ 624 (782)
T PRK00409 605 KAHELIEARKRLNKANEKKE 624 (782)
T ss_pred hHHHHHHHHHHHHHhhhhhh
Confidence 45556666666777666543
No 228
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=67.32 E-value=1.6e+02 Score=30.44 Aligned_cols=20 Identities=45% Similarity=0.458 Sum_probs=10.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R 188 (300)
++..++.++...++|+.--+
T Consensus 222 ~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 222 QLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34555555555555554433
No 229
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.13 E-value=1.6e+02 Score=30.53 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 201 NYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 201 ~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.++.....+.++..+..|+++++.++.
T Consensus 337 eL~~l~~~~~~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 337 ELDQLDDSDESLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 333444444455566666666666664
No 230
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.03 E-value=1.3e+02 Score=29.80 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=60.9
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh-------------hhHHHHHHHHHHHHHhHHhhhhhH
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRM-------------DKDVQMREMYDKSVQLEVDLRGVE 141 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~-------------e~Elq~r~l~~k~~K~EaElra~e 141 (300)
++|+.--.+|+.|..+..+|++.++..+-+..-+...+..... +.|+|-| .+++-+++ +.+
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwr--rdeanfic----~~E 163 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWR--RDEANFIC----AHE 163 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhh--HHHHHHHH----HHH
Confidence 4555666789999999999999999999988888766655443 4677743 13333333 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038916 142 AMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL 164 (300)
.+++...++..|++.+.-.+.||
T Consensus 164 gLkak~a~LafDLkamideKEEL 186 (389)
T KOG4687|consen 164 GLKAKCAGLAFDLKAMIDEKEEL 186 (389)
T ss_pred HHHHHhhhhhhHHHHHhchHHHH
Confidence 78888888888888888777777
No 231
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=66.99 E-value=1.7e+02 Score=30.82 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRS 145 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~ 145 (300)
+|++|... |---|+-+-....+|+.++.....-|+.-. -+....-+-+-.-|.|.....|.++-+.+|+.=++
T Consensus 254 ~e~Elk~~------f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 254 SEQELKLG------FEKFVHIINTDIANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred hHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred H----HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 146 E----LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 146 E----l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+ +.||..|+-..+ -+|.+|++.+|.|+..+..++-..+.=++-+.+ .-.+-+||.-|.-+.++
T Consensus 327 ~~~g~l~kl~~eie~kE---------eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E----re~L~reL~~i~~~~~~ 393 (622)
T COG5185 327 EWPGKLEKLKSEIELKE---------EEIKALQSNIDELHKQLRKQGISTEQFELMNQE----REKLTRELDKINIQSDK 393 (622)
T ss_pred hcchHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHhcchHHH
Q ss_pred HHHHH
Q 038916 222 LRAEI 226 (300)
Q Consensus 222 LRael 226 (300)
|+.++
T Consensus 394 L~k~V 398 (622)
T COG5185 394 LTKSV 398 (622)
T ss_pred HHHHH
No 232
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=66.77 E-value=1.7e+02 Score=30.63 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHhhhhhHHH-----------HHHHH--HHHHHHHHHHHHHHHhHhh-----------cccHHHHHHHHH
Q 038916 124 REMYDKSVQLEVDLRGVEAM-----------RSELL--KVQADIKELTAVRQELTDL-----------QQVPALKAEIEN 179 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~l-----------r~El~--ql~aE~q~L~a~RqEL~d~-----------qQv~al~aEl~~ 179 (300)
.....++.++|-|.|++-.+ ++|+. |...++=++...++||.+. ..+-++++|++.
T Consensus 234 ~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee 313 (554)
T KOG4677|consen 234 LIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEE 313 (554)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHH
Confidence 34556666777777743222 22332 3344444488888888832 235666677766
Q ss_pred HHHHH
Q 038916 180 VKQEL 184 (300)
Q Consensus 180 lRqEl 184 (300)
+|-|+
T Consensus 314 ~rve~ 318 (554)
T KOG4677|consen 314 TRVEL 318 (554)
T ss_pred HHhcc
Confidence 66543
No 233
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.60 E-value=1.7e+02 Score=31.56 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 167 LQQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
+++|-.|..||..+|+||...+.-.+-
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~er 132 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENER 132 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888877665443
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.07 E-value=70 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhhh
Q 038916 119 KDVQMREMYDKSVQLEVDLRGV 140 (300)
Q Consensus 119 ~Elq~r~l~~k~~K~EaElra~ 140 (300)
+|+..|+...+++.---|+..+
T Consensus 142 kE~~lr~~R~~a~~r~~e~~~i 163 (267)
T PF10234_consen 142 KEVELREERQRALARPLELNEI 163 (267)
T ss_pred chHhHHHHHHHHHcCCcCHHHH
Confidence 5555555555544444444434
No 235
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=65.59 E-value=1.1e+02 Score=28.17 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHHh
Q 038916 95 KQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAM----RSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 95 rqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~l----r~El~ql~aE~q~L~a~RqEL 164 (300)
+|-..-+.-||++.. ...+++--|=.+-.--++...|.+|+.-...- -..-.+++.|++.|..-|++.
T Consensus 95 ~Qt~~LA~~eirR~~--LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 95 QQTARLADVEIRRAQ--LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666665 22222222222333334444555555533332 223345556666666555555
No 236
>PRK11281 hypothetical protein; Provisional
Probab=65.58 E-value=1.7e+02 Score=33.53 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKLRAEI 226 (300)
Q Consensus 208 MeknlisMarEvekLRael 226 (300)
..+.+.-..++++.|...|
T Consensus 232 ~~~~~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555544
No 237
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.53 E-value=87 Score=26.78 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=52.4
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHH-----HHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchh
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKEL-----TAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYA 199 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L-----~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~ 199 (300)
..+....|||..|....-|.+|+..|..|..-- +.++|||++... -...-|+=+-.||.| .-
T Consensus 23 k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--nV~kRlefI~~Eikr-----------~e 89 (120)
T KOG3478|consen 23 KYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--NVGKRLEFISKEIKR-----------LE 89 (120)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--hHHHHHHHHHHHHHH-----------HH
Confidence 445556678888887777888887777765432 345566643211 112233333344443 32
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
. |+..|++++.-++-.|-|+-.++.
T Consensus 90 ~---~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 90 N---QIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 556788888888888888877765
No 238
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.32 E-value=75 Score=33.03 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~ 233 (300)
.+.++...++.|++++...|..-..|+
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666555555
No 239
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=65.07 E-value=28 Score=32.26 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
.+.-.+.+.|.+++.+..|.+.-++ | +++++.+-++|..|.....|||.+...+.+-++|.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~--k---a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLE--K---AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788889999999999888887 3 33777788999999999999999999998888775
No 240
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=65.01 E-value=2e+02 Score=33.63 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHhH
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMDKD---VQMREMYDKSVQLE 134 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~E---lq~r~l~~k~~K~E 134 (300)
-+-++.+....+|++-|-..|.+...... -+|+++.++.++||
T Consensus 1460 ~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~ 1505 (1758)
T KOG0994|consen 1460 NASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALE 1505 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 34556677777888888777777666422 23677777777666
No 241
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.99 E-value=1.8e+02 Score=30.25 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF 115 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~ 115 (300)
+++++.--..+.+.|..|----.+-+..|+||-.+..+=.+.|-.....+
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~req 269 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQ 269 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555556666655544444556788888877777555554434433
No 242
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=64.78 E-value=98 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916 184 LQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE 218 (300)
Q Consensus 184 l~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE 218 (300)
+..++..++.|++.... .+++++.+++-+
T Consensus 116 ~~~A~~~I~~ek~~a~~------~l~~ei~~lA~~ 144 (173)
T PRK13453 116 IETAQSEINSQKERAIA------DINNQVSELSVL 144 (173)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 33677777777766655 444444444444
No 243
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.78 E-value=1.5e+02 Score=29.14 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae 225 (300)
+.+...|..|+++|+....+.++-. ...+.+.++..+.+...+...+|++|.-+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~-~~~el~aei~~lk~~~~e~~eki~~la~e 187 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENE-KLKELKAEIDELKKKAREIHEKIQELANE 187 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655555433 22344444444444444444444444433
No 244
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=64.70 E-value=40 Score=34.93 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=36.3
Q ss_pred HhhhhhhhhhhHHH-HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 109 VHYADSFRMDKDVQ-MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 109 ~~~i~~~r~e~Elq-~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.++..|..+..-+. |..=++....+| ++++.|-++|.+.+.|-+.+...++.|.
T Consensus 232 ~ay~Qnk~akehv~km~kdle~Lq~aE---qsl~dlQk~Lekar~e~rnvavek~~le 286 (575)
T KOG4403|consen 232 FAYRQNKKAKEHVNKMMKDLEGLQRAE---QSLEDLQKRLEKAREEQRNVAVEKLDLE 286 (575)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhchhhhhhhHH
Confidence 34555555543333 555555666666 5566788888889999888888888886
No 245
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.31 E-value=1.6e+02 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKLRA 224 (300)
Q Consensus 208 MeknlisMarEvekLRa 224 (300)
-++++....+++.+++.
T Consensus 594 ~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 594 HKAKEIKSIEDLVKLKE 610 (771)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 246
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=64.25 E-value=74 Score=25.52 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHhHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHhH
Q 038916 127 YDKSVQLEVDLRGVEA----MRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 127 ~~k~~K~EaElra~e~----lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
..+...+|.+++.+.. |-++|.+..+.+.+|.....|++
T Consensus 31 ~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 31 DRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333555555555543 55678888888888888888884
No 247
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.96 E-value=42 Score=28.99 Aligned_cols=48 Identities=31% Similarity=0.403 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
|+.+...-|+.|+.|+.+...+++. ++++++.|++|+....+|+++..
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~-------d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALER-------DYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444433 44667777777777776666543
No 248
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=63.85 E-value=75 Score=29.84 Aligned_cols=14 Identities=0% Similarity=0.102 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHHH
Q 038916 218 ELEKLRAEIANSEK 231 (300)
Q Consensus 218 EvekLRael~n~ek 231 (300)
++..+++.++.++.
T Consensus 187 ~i~~~~~~l~~a~~ 200 (334)
T TIGR00998 187 AVQEAKERLKTAWL 200 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666655444
No 249
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=63.77 E-value=1.4e+02 Score=28.57 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 038916 95 KQELEVAQYEL 105 (300)
Q Consensus 95 rqeLaa~~~El 105 (300)
+.++..++.++
T Consensus 92 ~a~l~~a~a~l 102 (346)
T PRK10476 92 QADLALADAQI 102 (346)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 250
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=63.72 E-value=2.1e+02 Score=30.65 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 207 aMeknlisMarEvekLRael 226 (300)
.|.++|-.+..++..++..|
T Consensus 199 eL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444
No 251
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.70 E-value=2.7e+02 Score=31.92 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~ek 231 (300)
+-|-+.|.+++++-++|+-+|-|-.+
T Consensus 581 kk~idaL~alrrhke~LE~e~mnQql 606 (1195)
T KOG4643|consen 581 KKYIDALNALRRHKEKLEEEIMNQQL 606 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44566778999999999999855444
No 252
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.68 E-value=87 Score=32.09 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=10.5
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRA 187 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~ 187 (300)
++..+..+|+.+++||...
T Consensus 153 ~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 153 RIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445556666666665443
No 253
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=63.54 E-value=53 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 91 HVALKQELEVAQYELQRMVHYADSF 115 (300)
Q Consensus 91 h~aLrqeLaa~~~Elq~L~~~i~~~ 115 (300)
-..|+++|.-...+++.|...+.++
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~q~~k~ 183 (289)
T COG4985 159 GDPLERELQKRLLEVETLRDQVDKM 183 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777776666544444
No 254
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.99 E-value=95 Score=26.38 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=12.2
Q ss_pred HHhhhhhccchhhhHHHHHHHHHHHHHHH
Q 038916 77 IQGLLADNQRLAATHVALKQELEVAQYEL 105 (300)
Q Consensus 77 i~~L~~dNqRLa~~h~aLrqeLaa~~~El 105 (300)
++++-.|+.+|-.....|+.+++..++|+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 255
>PRK11020 hypothetical protein; Provisional
Probab=62.95 E-value=25 Score=30.03 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH
Q 038916 142 AMRSELLKVQADIKELTAVRQELT------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM 215 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM 215 (300)
.+++||++++. .|...|--|. |.--|.....|++.+-.||.+.+..-++++..-...+..++ -
T Consensus 2 ~~K~Eiq~L~d---rLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lp--------F 70 (118)
T PRK11020 2 VEKNEIKRLSD---RLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLP--------F 70 (118)
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------c
Confidence 35667777766 4444454444 44457778888888888888888887777644443333222 2
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHhhCCCCCCcccCCCCCCC-CCC
Q 038916 216 ARELEKL-RAEIANSEKRARAAAAVGNPGASFNTNYGTPEA-GYP 258 (300)
Q Consensus 216 arEvekL-Rael~n~ekR~ra~~a~~~p~~~y~~~~gnp~~-~y~ 258 (300)
.|+|-|. -|+.-.-+|-.|+-+ +-.|-.+-|.-+|--++ ||+
T Consensus 71 ~R~iTK~EQADMGkLKKSVrGLV-VVHPMTaLGrEmgLk~mTGfA 114 (118)
T PRK11020 71 SRAITKKEQADMGKLKKSVRGLV-VVHPMTALGREMGLKEMTGFA 114 (118)
T ss_pred chhccHHHHHhHHHHhhccccee-EecCchHHHHHcCcceecccC
Confidence 3444432 233444455554432 12333344444444432 444
No 256
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=62.67 E-value=2.2e+02 Score=30.37 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=49.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
|+..+.+..++|+.+++-+...-..++....+|.....-++.+++-|.....|.++.+..|..-.|
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566688888888888888888888888888888887777777777777777777777666644333
No 257
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.23 E-value=69 Score=27.81 Aligned_cols=63 Identities=22% Similarity=0.459 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--h-hcccHHHHHHHHHHHHHHHHHHH
Q 038916 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--D-LQQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 121 lq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~--d-~qQv~al~aEl~~lRqEl~r~R~ 189 (300)
-.+..+-..+..+..++. .++.++..+++++..|.+ .+| + ..+|..+.+|+..+...|...+.
T Consensus 72 eel~~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~---~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELA---ELKKEVKSLEAELASLSS---EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666665544 677777788886665544 333 1 35677888888888888887776
No 258
>PRK12704 phosphodiesterase; Provisional
Probab=62.10 E-value=2.1e+02 Score=29.94 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=6.3
Q ss_pred hHHHHHHHHHh
Q 038916 228 NSEKRARAAAA 238 (300)
Q Consensus 228 n~ekR~ra~~a 238 (300)
+++++++--.+
T Consensus 185 ~a~~~a~~i~~ 195 (520)
T PRK12704 185 EADKKAKEILA 195 (520)
T ss_pred HHHHHHHHHHH
Confidence 56666665444
No 259
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=62.03 E-value=92 Score=25.89 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
--|..++.++|...-.+.+++...+...
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677789999999999999999988644
No 260
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.96 E-value=82 Score=25.31 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
|..-+.....+++..|+..++..++ .+.+..+|++-+|+++++.-.++||
T Consensus 45 qkyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 45 QKYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445556666666666665554 4567777888899999888777765
No 261
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=61.92 E-value=2.3e+02 Score=30.38 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 93 ALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.++|++...++||.++....+.+..|.....+.+.+...++++.+-.+ -.++.......+.|...-++|+
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~l---e~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQL---DGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666554444444443323333333333333333222 2233334444445555555554
No 262
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=61.86 E-value=1.2e+02 Score=29.81 Aligned_cols=93 Identities=20% Similarity=0.359 Sum_probs=50.6
Q ss_pred HHhhhhhccc----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 038916 77 IQGLLADNQR----LAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQA 152 (300)
Q Consensus 77 i~~L~~dNqR----La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~a 152 (300)
|.+-+-|-|| |+-..+.|++|+.+.-..|..-- .||+.- -|+.|+ +|..|+.++.+
T Consensus 155 IEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F---------~~l~~c-------L~dREv----aLl~EmdkVK~ 214 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTF---------AELQSC-------LMDREV----ALLAEMDKVKA 214 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---------HHHHHH-------HHHHHH----HHHHHHHHHHH
Confidence 5566666666 66677888888888766664332 344332 233332 25556666666
Q ss_pred HHHHHHHHHHHhH-hhcc-----cHHHHHHHHHHHHHHHHHHH
Q 038916 153 DIKELTAVRQELT-DLQQ-----VPALKAEIENVKQELQRARA 189 (300)
Q Consensus 153 E~q~L~a~RqEL~-d~qQ-----v~al~aEl~~lRqEl~r~R~ 189 (300)
|+-.+...||.=. +++. +.+--.+|..||-||-+-++
T Consensus 215 EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs 257 (302)
T PF07139_consen 215 EAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVS 257 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Confidence 6666666666543 1111 22223345555555555443
No 263
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.74 E-value=1.1e+02 Score=27.55 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhH--------------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh-h
Q 038916 147 LLKVQADIKELTAVRQELT--------------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH-G 205 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~--------------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ-~ 205 (300)
|.+++-+.+.+.+.=+.|. =..++..|..++..|..++...+.-++.-.+.+.+..+. .
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~ 227 (300)
+....++.-+.+..++|++.|.
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 264
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=61.67 E-value=2.8e+02 Score=31.32 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 172 ALKAEIENVKQELQR 186 (300)
Q Consensus 172 al~aEl~~lRqEl~r 186 (300)
....++..+++++..
T Consensus 294 ~~~~~~~~~~~~~~~ 308 (1047)
T PRK10246 294 PHWERIQEQSAALAH 308 (1047)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333444444444443
No 265
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=61.62 E-value=1.3e+02 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHH
Q 038916 182 QELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAREL 219 (300)
Q Consensus 182 qEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEv 219 (300)
+.+..++..++.|++.... .+.+++..++-++
T Consensus 144 ~ii~~A~~~Ie~Ek~~a~~------~Lk~ei~~lAv~i 175 (205)
T PRK06231 144 LIIFQARQEIEKERRELKE------QLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 4444677777777765554 5556666665554
No 266
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=61.35 E-value=1.3e+02 Score=27.44 Aligned_cols=98 Identities=26% Similarity=0.342 Sum_probs=50.5
Q ss_pred HhHHhhhhhHHHHH----HHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHH
Q 038916 132 QLEVDLRGVEAMRS----ELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV 207 (300)
Q Consensus 132 K~EaElra~e~lr~----El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qa 207 (300)
+||.|++..+.+-+ .|...+.-++......++. -+++..|..=|...+.-+.......+.=..-..+.-+=+.+
T Consensus 71 qLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A--~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 71 QLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQA--QQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444322 2334433333333322222 23456666666666665555555544433222333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ek 231 (300)
-++.++.+.+.+...|.+|++.++
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777788888888776665
No 267
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=1.5e+02 Score=27.95 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATH-VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEA 142 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h-~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~ 142 (300)
.-.|+.....++||..=++.-..++..- -.+=+++....+|+..|. .+-|+.+|.+--.. +-==..+ ++.
T Consensus 6 e~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell-------~qMdlEvr~lp~~~-Rs~~~~K-lR~ 76 (220)
T KOG1666|consen 6 EGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELL-------DQMDLEVRELPPNF-RSSYLSK-LRE 76 (220)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHhCCchh-hhHHHHH-HHH
Confidence 3467778888889988888877777332 235567777778887776 34444444432222 1111123 667
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELT 158 (300)
Q Consensus 143 lr~El~ql~aE~q~L~ 158 (300)
-+.++.+++.|++...
T Consensus 77 yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 77 YKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888999999998887
No 268
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.73 E-value=1.4e+02 Score=27.53 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 038916 214 SMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 214 sMarEvekLRael~n~ekR~r 234 (300)
.+...|..|...|..++.|+-
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae 193 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAE 193 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555543
No 269
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=60.65 E-value=64 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
.++.++.++..+|+.|+.+|..++.
T Consensus 85 ~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 85 EIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777766544
No 270
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=60.64 E-value=75 Score=24.55 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
++.++.++...+.++..+.. ++=-|..+|.++..++..++.++...+...-.+
T Consensus 61 ~~~~r~~~~~~r~~l~~ll~--~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~ 113 (125)
T PF13801_consen 61 MRALRQELRAARQELRALLA--APPPDEAAIEALLEEIREAQAELRQERLEHLLE 113 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666566555533221 111155667777777777777777766555444
No 271
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=60.20 E-value=1.5e+02 Score=33.02 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc--cHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 118 DKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQ--VPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 118 e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQ--v~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
..|+++.++.+...+.++.++ +-+..++..+.......+.+-.... -+.-..++...|+.|+..++.+...-
T Consensus 86 ~dd~~l~~l~~ql~q~~r~i~------eq~~~lr~sL~l~~~~~~q~~~lP~~~~~~e~~~v~~eR~~L~~e~~~in~~~ 159 (835)
T COG3264 86 SDDRQLANLLLQLLQSSRTIR------EQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALE 159 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHH------HHHHHhcchHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHhhhHHHHHHHh
Confidence 355566666666655554433 4445555544444444444421100 11233455555666666555555443
Q ss_pred hchhhhhhhhHHHHHHHHHHHHHH
Q 038916 196 KGYAENYEHGQVMEKKLISMAREL 219 (300)
Q Consensus 196 k~~~e~~eQ~qaMeknlisMarEv 219 (300)
......-...+.+=..+..|+||+
T Consensus 160 ~~~e~ls~~~~~~ld~I~~~RReL 183 (835)
T COG3264 160 GQAEQLTAEVRDILDQILDTRREL 183 (835)
T ss_pred cchhhhCHHHHHHHHHHHHHHHHH
Confidence 333233334455556666666664
No 272
>COG5293 Predicted ATPase [General function prediction only]
Probab=60.10 E-value=1.4e+02 Score=31.39 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH-------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELT-------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM 215 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~-------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM 215 (300)
+++|+.++++|++++.+-.++|+ ..-.-.....++..+..|+.+.|..+. |.....+.|.|.-++...|-.+
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~ela-e~~~rie~l~k~~~~~~~i~~l 418 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELA-ELEYRIEPLRKLHALDQYIGTL 418 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHH-HHHHhhhHHHHHHHHHHHHHHH
Confidence 55566666666666666666665 111222223444445555444444432 2333455566666666666666
Q ss_pred HHHHHH
Q 038916 216 ARELEK 221 (300)
Q Consensus 216 arEvek 221 (300)
..|+=.
T Consensus 419 khe~l~ 424 (591)
T COG5293 419 KHECLD 424 (591)
T ss_pred HHHHHH
Confidence 665543
No 273
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=60.02 E-value=18 Score=31.63 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=46.9
Q ss_pred HHhHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHH
Q 038916 131 VQLEVDLRGVEA-MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVME 209 (300)
Q Consensus 131 ~K~EaElra~e~-lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMe 209 (300)
.+++.|++.+++ .-.=.....+|+|.|.+.--.+ ...|..+.++++.-+|||+.. +.+.+.++|-.-
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl--~~kVtSLea~lEkqqQeLkAd----------hS~lllhvk~~~ 125 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSL--QDKVTSLEAKLEKQQQELKAD----------HSTLLLHVKQFP 125 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccH--HhHcccHHHHHHHHHHHHhhh----------HHHHHHHHHHHH
Confidence 466666664432 2222336677777777766555 346888899999999988763 344555666666
Q ss_pred HHHHHHHH
Q 038916 210 KKLISMAR 217 (300)
Q Consensus 210 knlisMar 217 (300)
++|-++.-
T Consensus 126 ~DLr~LsC 133 (138)
T PF03954_consen 126 KDLRSLSC 133 (138)
T ss_pred HHHhhhhh
Confidence 66655543
No 274
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=59.98 E-value=25 Score=24.73 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 038916 177 IENVKQELQR 186 (300)
Q Consensus 177 l~~lRqEl~r 186 (300)
|++++|||.+
T Consensus 28 IeA~~~eL~r 37 (40)
T PF08776_consen 28 IEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3445555544
No 275
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.82 E-value=2.2e+02 Score=29.57 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh--------HHHHHHHHHHH
Q 038916 80 LLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV--------EAMRSELLKVQ 151 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~--------e~lr~El~ql~ 151 (300)
|-.|---+..+...|+.-+...+.|+-...+.+-..+.-.|...+.+...+-++..|++.. +-+.+|+.+++
T Consensus 304 lqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~ 383 (542)
T KOG0993|consen 304 LQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLR 383 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666555555666655554444445556777777777777666666532 23444444444
Q ss_pred HHHHHHHHHHHHhH-hhcc-----c---------------HHHHHHHH-------HHHHHHHHHHHHhhhhhhc------
Q 038916 152 ADIKELTAVRQELT-DLQQ-----V---------------PALKAEIE-------NVKQELQRARAAIEFDKKG------ 197 (300)
Q Consensus 152 aE~q~L~a~RqEL~-d~qQ-----v---------------~al~aEl~-------~lRqEl~r~R~a~e~Ekk~------ 197 (300)
-+.+.|.+ .++|+ .+|| + ..++++|+ .++.|++..+-+++-|...
T Consensus 384 q~nd~l~~-~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ 462 (542)
T KOG0993|consen 384 QINDLLTT-VGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEW 462 (542)
T ss_pred HHHHhhhh-ccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322 12222 1111 0 12222222 3444455555454444332
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 198 -YAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 198 -~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
--.+++|-...+..|-+++-|.+++.
T Consensus 463 ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 463 QLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 24567788888899999999999986
No 276
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=59.20 E-value=1.6e+02 Score=27.87 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHH
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQAD 153 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE 153 (300)
+|++.|=.+|.-+.-....+.+.+.....+++.+.. ++ +--.....++.-+.-.|.. +.++++|.++..|
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s---sL----~eTtkdf~~~~~k~~~dF~--~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS---SL----EETTKDFIDKTEKVHNDFQ--DILQDELKDVDTD 112 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhchH
Confidence 388888888888888888888888888888876652 11 1112445555556555553 6788888888776
No 277
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.06 E-value=89 Score=34.18 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 038916 218 ELEKLRAEIA 227 (300)
Q Consensus 218 EvekLRael~ 227 (300)
++++.+.++.
T Consensus 608 ~~~~~~~~l~ 617 (782)
T PRK00409 608 ELIEARKRLN 617 (782)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 278
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.85 E-value=1.3e+02 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 93 ALKQELEVAQYELQRM 108 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L 108 (300)
.++..+...+.++..+
T Consensus 66 ~~~~~~~~l~~~~~~~ 81 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEEL 81 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 279
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.75 E-value=59 Score=27.07 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 124 REMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
+++++.+..||..+. .+.+++..+...+..|..--++|
T Consensus 4 ~~l~~~l~~le~~l~---~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 4 KELFDRLDQLEQQLG---QLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777775444 44445544444444444433333
No 280
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.74 E-value=1.1e+02 Score=28.20 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038916 145 SELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 145 ~El~ql~aE~q~L~a~RqEL 164 (300)
+|+++|..+++.|.+-.|+|
T Consensus 79 eel~~ld~~i~~l~ek~q~l 98 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSL 98 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 46788888888888887777
No 281
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.45 E-value=1.8e+02 Score=28.64 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 118 DKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 118 e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
|+|-+|.+|.-...+|..| =+-+|..+++|.+ .|-.+|+|+
T Consensus 86 dRetEI~eLksQL~RMrED-----WIEEECHRVEAQL-ALKEARkEI 126 (305)
T PF15290_consen 86 DRETEIDELKSQLARMRED-----WIEEECHRVEAQL-ALKEARKEI 126 (305)
T ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566666666666655533 2456666666654 455556666
No 282
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.42 E-value=2.8e+02 Score=30.36 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHHhhhhhcc
Q 038916 66 IEEHLAAQHQDIQGLLADNQ 85 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNq 85 (300)
+++.+..|+..+|..+..|+
T Consensus 113 ~q~a~~~~e~~lq~q~e~~~ 132 (716)
T KOG4593|consen 113 LQEALKGQEEKLQEQLERNR 132 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444443
No 283
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=58.31 E-value=1e+02 Score=25.13 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 184 LQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 184 l~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
..++..-++.|.+.....-..+..+..+|..|..++.++-..|..-
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366667777777777766677777777777777777777666533
No 284
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=58.31 E-value=1.9e+02 Score=28.28 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 119 KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 119 ~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.|.|....|...-.||.|+-...++++ |++-=|++|+-.--+|.
T Consensus 82 ~e~q~~q~y~q~s~Leddlsqt~aike---ql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 82 QEDQRVQFYQQESQLEDDLSQTHAIKE---QLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHH
Confidence 444555556666667766665555554 34455666665555553
No 285
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=58.02 E-value=1.5e+02 Score=31.32 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=64.7
Q ss_pred HHHHHhHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHH-hHhhcccHHHHHHHHHHHHHHHHHHH------Hhhhhhhch
Q 038916 128 DKSVQLEVDLRGV--EAMRSELLKVQADIKELTAVRQE-LTDLQQVPALKAEIENVKQELQRARA------AIEFDKKGY 198 (300)
Q Consensus 128 ~k~~K~EaElra~--e~lr~El~ql~aE~q~L~a~RqE-L~d~qQv~al~aEl~~lRqEl~r~R~------a~e~Ekk~~ 198 (300)
++..++|.--|.+ +.++.||......++.|..++-| ..-.--|..|..-|+.|.+=..|.-. |+-+|+.-.
T Consensus 212 e~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvss~AE~lGAv~QE~R~S 291 (538)
T PF05781_consen 212 EKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCATRVSSRAEMLGAVHQESRVS 291 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4555555544544 55888888999888888888543 31111245555566655554443322 344555333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 199 AENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
.. +.+|-.-++.++|=++|.+|||+..+|-+
T Consensus 292 kA----vevM~qhvenLkr~~~kehaeL~E~k~~l 322 (538)
T PF05781_consen 292 KA----VEVMIQHVENLKRMYEKEHAELEELKKLL 322 (538)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 45788888999999999999999887743
No 286
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=57.88 E-value=45 Score=23.50 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=7.2
Q ss_pred cHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQ 185 (300)
Q Consensus 170 v~al~aEl~~lRqEl~ 185 (300)
+..++.||..+++|+.
T Consensus 13 L~EvrkEl~K~K~EII 28 (40)
T PF08776_consen 13 LEEVRKELQKVKEEII 28 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 287
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=57.74 E-value=1.5e+02 Score=31.47 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH----h-------h-cccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT----D-------L-QQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~----d-------~-qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
...+|+--||-|+. .++.+.+-.+.-+-.|+..|.||+ | . +-|..-+.||...---|-.+...-=
T Consensus 594 G~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKw 670 (790)
T PF07794_consen 594 GYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKW 670 (790)
T ss_pred hhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776655 667777788888889999999997 1 1 1233333444332222222222212
Q ss_pred hhhhchhhhhhhhHHHHHHH----------HHHHHHHHHHHHHHHhHHH
Q 038916 193 FDKKGYAENYEHGQVMEKKL----------ISMARELEKLRAEIANSEK 231 (300)
Q Consensus 193 ~Ekk~~~e~~eQ~qaMeknl----------isMarEvekLRael~n~ek 231 (300)
.-||-+....-|-+.+|.|+ |.+.-|--+|-|+|...+.
T Consensus 671 v~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea 719 (790)
T PF07794_consen 671 VAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEA 719 (790)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHh
Confidence 23444444444555555444 4444555566666665544
No 288
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=57.52 E-value=2.9e+02 Score=32.04 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhhh-------hHHHHHHHHHHHHHhHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYELQRMVH-YADSFRMD-------KDVQMREMYDKSVQLEVDLR-GVEAMRSELLKVQADIKELTAVRQ 162 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~-~i~~~r~e-------~Elq~r~l~~k~~K~EaElr-a~e~lr~El~ql~aE~q~L~a~Rq 162 (300)
..||..+...+|||--|.. +...+-.+ -|.-+..+..++.-+|..-. .+..+++.+..+..=-|.|..+|.
T Consensus 1066 ~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRn 1145 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRN 1145 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777655542 22222221 12223444445555553322 124444444444433333333333
Q ss_pred HhH---------hhcccHHHHHHHH--------HHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 163 ELT---------DLQQVPALKAEIE--------NVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 163 EL~---------d~qQv~al~aEl~--------~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae 225 (300)
|=. |-.-|.+|-..|. ...-|+....++++-||-.+.. -++.|.+.+-..--|||.||.|
T Consensus 1146 EK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnlt---dvK~missf~d~laeiE~LrnE 1222 (1439)
T PF12252_consen 1146 EKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLT---DVKSMISSFNDRLAEIEFLRNE 1222 (1439)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchh---hHHHHHHHHHhhhhHHHHHHHH
Confidence 332 2222333333332 5567788888888877754444 6789999999999999999876
Q ss_pred H
Q 038916 226 I 226 (300)
Q Consensus 226 l 226 (300)
-
T Consensus 1223 r 1223 (1439)
T PF12252_consen 1223 R 1223 (1439)
T ss_pred H
Confidence 4
No 289
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.47 E-value=1.6e+02 Score=27.25 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=6.5
Q ss_pred HHHHHhhhhhhchh
Q 038916 186 RARAAIEFDKKGYA 199 (300)
Q Consensus 186 r~R~a~e~Ekk~~~ 199 (300)
.++..++.|++...
T Consensus 105 ~a~~~ie~E~~~a~ 118 (246)
T TIGR03321 105 KWQEALRREQAALS 118 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544433
No 290
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=57.26 E-value=1.9e+02 Score=28.01 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 144 RSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 144 r~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
.+|+.++++-++++.. -|. .=...=..||=|=||+.|-..++-. |.+.. .+-.-.+.|+-||||+|
T Consensus 219 ~EEl~RL~sHl~~f~~---~L~---~~~~vGrkLDFL~QEmnRE~NTigS--Ks~d~------~is~~vVe~K~eiEkiR 284 (291)
T TIGR00255 219 AEEIDRLDSHVKEFYN---ILK---KGEAVGRKLDFMMQELNRESNTLAS--KAIDA------DITNLAVEMKVLIEKIK 284 (291)
T ss_pred HHHHHHHHHHHHHHHH---HHh---cCCCcCcchhHHHHHHhHHHHHHHH--ccCcH------HHHHHHHHHHHHHHHHH
Confidence 3456666665554432 231 1112245688889999997777753 23222 35566789999999999
Q ss_pred HHHHhHH
Q 038916 224 AEIANSE 230 (300)
Q Consensus 224 ael~n~e 230 (300)
..+.|-|
T Consensus 285 EQVQNIE 291 (291)
T TIGR00255 285 EQIQNIE 291 (291)
T ss_pred HHHhcCC
Confidence 9998853
No 291
>PRK14159 heat shock protein GrpE; Provisional
Probab=57.15 E-value=28 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+..+++++..+...+.++.|+++|.+||..-
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~r 62 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEK 62 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777775544
No 292
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=56.20 E-value=48 Score=27.86 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 124 REMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
++++++..+||..+. .+.+++..+..++..|..--++|
T Consensus 4 ~elfd~l~~le~~l~---~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 4 KEIFDALDDLEQNLG---VLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777774443 45555555555444444444443
No 293
>PF14182 YgaB: YgaB-like protein
Probab=55.94 E-value=71 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
.+..++.||..++++|.-....|+.
T Consensus 41 ~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 41 ELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777666666653
No 294
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.82 E-value=1.4e+02 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHhHHhhh
Q 038916 118 DKDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 118 e~Elq~r~l~~k~~K~EaElr 138 (300)
+.|-+|.+|-.++..+|.|+.
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665554
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.80 E-value=2.6e+02 Score=29.15 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=7.7
Q ss_pred CCCCCCCCCcchh
Q 038916 283 PGPGSWGAYDMQR 295 (300)
Q Consensus 283 ~g~~~~g~yd~~~ 295 (300)
|++..-.+||+=|
T Consensus 244 p~~v~ls~fdp~r 256 (514)
T TIGR03319 244 PEAVILSGFDPVR 256 (514)
T ss_pred CCeEEecCCchHH
Confidence 5555666667644
No 296
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=55.62 E-value=97 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=27.3
Q ss_pred hhhhhhhHHH-HHHHHHHHHHhHHhhhhh--HHHHHHHHH
Q 038916 113 DSFRMDKDVQ-MREMYDKSVQLEVDLRGV--EAMRSELLK 149 (300)
Q Consensus 113 ~~~r~e~Elq-~r~l~~k~~K~EaElra~--e~lr~El~q 149 (300)
=|+++++|+. -|.+.++...-|.++|.- +++.+|+-|
T Consensus 277 lnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQ 316 (497)
T COG3851 277 LNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQ 316 (497)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3678888887 788888888888888853 556666554
No 297
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=55.30 E-value=13 Score=33.35 Aligned_cols=42 Identities=21% Similarity=0.541 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
|..+-..+++.+=||.||..-+.|+.++++|+-|++. +||||
T Consensus 6 EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RD---LKqEl 47 (166)
T PF04880_consen 6 ESKLNQAIERNALLESELDEKENLREEVQRLKDELRD---LKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 5557778899999999998888888888888776653 45666
No 298
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=55.29 E-value=2.3e+02 Score=28.41 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
.++..+.+++..+++.+...-..+....+.. .++.++...++.+++..+++.+.+.
T Consensus 313 p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~------~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 313 PQLVALEAQLAELRQQIAAELRQILASLPNE------LALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777766665555444444333332 4455666666666666666665544
No 299
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.96 E-value=1.7e+02 Score=26.67 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhhh---ch
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDKK---GY 198 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ekk---~~ 198 (300)
-+.+.+-..+++.| ++.++.++.+-..|-..|..++.-+..+ +++..++-|-+.+.|-+.......+-=.. ..
T Consensus 57 N~~L~epL~~a~~e---~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 57 NKRLSEPLKKAEEE---VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 3355556666666666666666555421 22333333333333322221111111111 22
Q ss_pred hhhhhhhH-----HHHHHHHHHHHHHHHHHHHHH
Q 038916 199 AENYEHGQ-----VMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 199 ~e~~eQ~q-----aMeknlisMarEvekLRael~ 227 (300)
..+++|.- .+|+.|..|...+|+--++|.
T Consensus 134 i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 134 IQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 467778888888888777775
No 300
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.87 E-value=2.8e+02 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
|-+|....++|+-.+.--+.+| .|..++.+-|..+++|+-+.-..+--|
T Consensus 384 l~ee~~~~~~elae~~~rie~l---~k~~~~~~~i~~lkhe~l~~~~r~y~e 432 (591)
T COG5293 384 LCEEIIALRGELAELEYRIEPL---RKLHALDQYIGTLKHECLDLEERIYTE 432 (591)
T ss_pred HHHHHHHHhhhHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444555444444444444 788888888888888877654444333
No 301
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.81 E-value=1.3e+02 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKK 196 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk 196 (300)
+|+..+..|.|.+-.|.++.+.+++-+-|
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 56777778888888888888887776543
No 302
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=54.73 E-value=1.6e+02 Score=26.39 Aligned_cols=84 Identities=27% Similarity=0.457 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---h--hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhH-------HH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT---D--LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ-------VM 208 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~---d--~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~q-------aM 208 (300)
+.+-..|-+++-+-+.|.-+|.||. | -+-|..++..||.+-.||..+.+.|-.-.+-|-+-+++.- .+
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~L 131 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQL 131 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777888888876 1 2457888889999999998888887655544444444432 33
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 209 EKKLISMARELEKLRA 224 (300)
Q Consensus 209 eknlisMarEvekLRa 224 (300)
-..|..+..|-|++|-
T Consensus 132 v~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 132 VTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456677777777774
No 303
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.72 E-value=1.1e+02 Score=32.43 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=43.0
Q ss_pred HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 038916 76 DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIK 155 (300)
Q Consensus 76 Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q 155 (300)
||+.+..+|-|+-.....|--.|+..++++..+. -.+-|-+...-...+.-..|++|++.++.-++|++++-.|.+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~----~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR----HEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443332 001122333455567777899999999998899888877765
Q ss_pred H
Q 038916 156 E 156 (300)
Q Consensus 156 ~ 156 (300)
+
T Consensus 296 e 296 (596)
T KOG4360|consen 296 E 296 (596)
T ss_pred H
Confidence 3
No 304
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.57 E-value=1.9e+02 Score=33.13 Aligned_cols=18 Identities=39% Similarity=0.193 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 038916 88 AATHVALKQELEVAQYEL 105 (300)
Q Consensus 88 a~~h~aLrqeLaa~~~El 105 (300)
+..+..|+.++..++.|.
T Consensus 200 aeky~~lkde~~~~q~e~ 217 (1141)
T KOG0018|consen 200 AEKYQRLKDEKGKAQKEQ 217 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666655554
No 305
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.01 E-value=73 Score=31.19 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHhhhhhccchhhhH-------HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038916 68 EHLAAQHQDIQGLLADNQRLAATH-------VALKQELEVAQYELQRMVHYADSFRM 117 (300)
Q Consensus 68 e~la~Q~~Ei~~L~~dNqRLa~~h-------~aLrqeLaa~~~Elq~L~~~i~~~r~ 117 (300)
++|.....||..|-..--|+-.+- |--+=-|--|..||+.|.++|+.+|.
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555655555555544321 22222233455666666666665554
No 306
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=53.72 E-value=1.5e+02 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=8.3
Q ss_pred HHHHHhhhhhhchhh
Q 038916 186 RARAAIEFDKKGYAE 200 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e 200 (300)
.++..++.|++....
T Consensus 122 ~a~~~i~~ek~~a~~ 136 (156)
T CHL00118 122 EATKQLEAQKEKALK 136 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666654444
No 307
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=53.32 E-value=1.8e+02 Score=32.85 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHH
Q 038916 175 AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL 212 (300)
Q Consensus 175 aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknl 212 (300)
.|+++||-|+...+..| |-+.+.++=+++.+..+
T Consensus 1092 helenLrnEieklndkI----kdnne~~QVglae~nsl 1125 (1424)
T KOG4572|consen 1092 HELENLRNEIEKLNDKI----KDNNEGDQVGLAEENSL 1125 (1424)
T ss_pred HHHHHHHHHHHHHHHHh----hcCCCcchHHHHHhccC
Confidence 44555555554444433 34455555555555444
No 308
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.80 E-value=2.5e+02 Score=28.04 Aligned_cols=52 Identities=13% Similarity=0.313 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
|..+..+|..+-.||....+.++ ||-....+--.+.-+++-|..|+.||..+
T Consensus 296 V~~~t~~L~~IseeLe~vK~eme-erg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEME-ERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443 45555666667777788888888888765
No 309
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=52.47 E-value=2.4e+02 Score=27.82 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 209 EKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 209 eknlisMarEvekLRael~n~ekR~ 233 (300)
+.++.....++..++++++.++...
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776654
No 310
>PLN03184 chloroplast Hsp70; Provisional
Probab=52.16 E-value=3.3e+02 Score=29.20 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=8.3
Q ss_pred CCcccCCCCCCCCCC
Q 038916 244 ASFNTNYGTPEAGYP 258 (300)
Q Consensus 244 ~~y~~~~gnp~~~y~ 258 (300)
+..|+..|||...-.
T Consensus 645 ~~~~~~~~~~~~~~~ 659 (673)
T PLN03184 645 PAPGGEAGSSSSSSS 659 (673)
T ss_pred CCcccccCCCCCCCC
Confidence 355566666655443
No 311
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.07 E-value=1.6e+02 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ekR~ra~ 236 (300)
+.++--++..-|+|-++|++-.+||+.+-
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555899999999999998764
No 312
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=52.01 E-value=4.1e+02 Score=30.24 Aligned_cols=15 Identities=53% Similarity=0.647 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 213 ISMARELEKLRAEIA 227 (300)
Q Consensus 213 isMarEvekLRael~ 227 (300)
+-..+|+|.||.|++
T Consensus 1088 ~L~ehelenLrnEie 1102 (1424)
T KOG4572|consen 1088 ILKEHELENLRNEIE 1102 (1424)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334567777777765
No 313
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=52.00 E-value=3.3e+02 Score=29.23 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 69 HLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 69 ~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
+++.-...++....+|+.|..-....++.|......++++.
T Consensus 95 ElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 95 ELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555666665555555566665555555554
No 314
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=51.92 E-value=1.6e+02 Score=25.66 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916 136 DLRGVEAMRSELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS 214 (300)
Q Consensus 136 Elra~e~lr~El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis 214 (300)
.++.+..+|+.+.-+.. .+..++++|.+. ..+..++.+|..+..|....+....- .+....++ ..+++-.+++.
T Consensus 75 ~v~~L~h~keKl~~~~~---~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~-l~~~~~~~-~~P~ll~Dy~~ 149 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSE---ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK-LRQQGGLL-GVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCC-CCcHHHHHHHH
Confidence 34444445554444444 333344444321 22444445555555544444444332 22333333 45777777888
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 038916 215 MARELEKLRAEIANSEKRA 233 (300)
Q Consensus 215 MarEvekLRael~n~ekR~ 233 (300)
...+++.||..|.+-+.+.
T Consensus 150 ~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887665543
No 315
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.89 E-value=2e+02 Score=31.56 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038916 171 PALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
..+++|++.++++|......++.
T Consensus 535 ~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 535 EKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333
No 316
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.79 E-value=1e+02 Score=27.32 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 172 ALKAEIENVKQELQR 186 (300)
Q Consensus 172 al~aEl~~lRqEl~r 186 (300)
.+..|++.+++||..
T Consensus 158 ~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK 172 (192)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555554444
No 317
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.78 E-value=2e+02 Score=26.59 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 141 EAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
....+++..+..++..+...+++|
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555
No 318
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.61 E-value=3.2e+02 Score=28.91 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLR 223 (300)
++...++++..+.+++++++
T Consensus 450 ~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 450 QLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 319
>PRK11820 hypothetical protein; Provisional
Probab=51.50 E-value=2.4e+02 Score=27.34 Aligned_cols=74 Identities=19% Similarity=0.347 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
+.+|+.++++-+.++..+ |. .=...=..||=|=||+.|-..++-. |.+.. .+-.-.+.|+-||||+
T Consensus 215 I~EEi~RL~sHl~~f~~~---L~---~~~~vGrkLDFL~QEm~RE~NTigS--Ks~~~------~is~~vVe~K~elEki 280 (288)
T PRK11820 215 IAEELDRLKSHLKEFREI---LK---KGGPVGRKLDFLMQELNREANTLGS--KSNDA------EITNLVVELKVLIEQM 280 (288)
T ss_pred hHHHHHHHHHHHHHHHHH---Hh---cCCCCCcchhHHHHHHhHHHHHHHH--ccCcH------HHHHHHHHHHHHHHHH
Confidence 445677777755554333 31 1112345688889999997777753 23322 4566688999999999
Q ss_pred HHHHHhHH
Q 038916 223 RAEIANSE 230 (300)
Q Consensus 223 Rael~n~e 230 (300)
|..+.|.|
T Consensus 281 REQVQNIE 288 (288)
T PRK11820 281 REQVQNIE 288 (288)
T ss_pred HHHHhcCC
Confidence 99998853
No 320
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=51.43 E-value=53 Score=31.55 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 198 YAENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 198 ~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
-.+.+.++...-++|..|..++..|...|.+.+.|
T Consensus 36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~r 70 (304)
T PF02646_consen 36 LKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTR 70 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCch
Confidence 34445566666677899999999999999855544
No 321
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=51.34 E-value=2.2e+02 Score=26.98 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 206 qaMeknlisMarEvekLRael 226 (300)
...+..+.....++++++..+
T Consensus 181 ~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 181 AQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 322
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.04 E-value=93 Score=28.75 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYELQRMV 109 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~ 109 (300)
|.|+.||+.....|....
T Consensus 99 vrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666665554443
No 323
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.80 E-value=2.5e+02 Score=27.54 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael 226 (300)
|+.-+|..|.+-+.-|++|-.+|
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555
No 324
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=50.77 E-value=2.2e+02 Score=26.79 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKL 222 (300)
Q Consensus 204 Q~qaMeknlisMarEvekL 222 (300)
+++..++++......++++
T Consensus 187 ~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 187 EVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555543
No 325
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.58 E-value=1.2e+02 Score=23.91 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHHH-HhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARA-AIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~-a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~ 236 (300)
+.++++|++.+-+|+...+. .-+||.| ....+.-++.|...+-.|-+.-.|++...+.+=.|++..
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~k-i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHK-INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766554 3455655 556666666666666666555555555544444444443
No 326
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=50.21 E-value=1.6e+02 Score=27.26 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHH
Q 038916 69 HLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELL 148 (300)
Q Consensus 69 ~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ 148 (300)
+|..+-.||+.|-..||+|-.+..-||.-.--..+|= -..-++.+|-|.-.-|. ...|++|+.
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddR------qKgrklarEWQrFGryt-----------a~vmr~eV~ 111 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDR------QKGRKLAREWQRFGRYT-----------ASVMRQEVA 111 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhH------HHhHHHhHHHHHhhhHH-----------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhH-hhcccHHHHHHHH
Q 038916 149 KVQADIKELTAVRQELT-DLQQVPALKAEIE 178 (300)
Q Consensus 149 ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~ 178 (300)
.-...++.|+.-.++|. ++.-+..+--=||
T Consensus 112 ~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 112 QYQQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
No 327
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=50.14 E-value=2.1e+02 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=9.8
Q ss_pred HHHHHHhHHhhhhhHHHHHHH
Q 038916 127 YDKSVQLEVDLRGVEAMRSEL 147 (300)
Q Consensus 127 ~~k~~K~EaElra~e~lr~El 147 (300)
-+++-.+|..+..+...-+++
T Consensus 91 eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444443
No 328
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.97 E-value=3.1e+02 Score=28.33 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhHh--hcccHHHHHHHHHHHHHHHHH-----HHHhhhhhhchhhhhh
Q 038916 142 AMRSELLKVQADIKEL--TAVRQELTD--LQQVPALKAEIENVKQELQRA-----RAAIEFDKKGYAENYE 203 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L--~a~RqEL~d--~qQv~al~aEl~~lRqEl~r~-----R~a~e~Ekk~~~e~~e 203 (300)
.++.+..+.+.++++. ..+++||.- -.....+..+|...+.|+++. ...++.|+.++...|+
T Consensus 311 ~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~ 381 (582)
T PF09731_consen 311 ELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLA 381 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 344444431 111234555555555555333 4556667655554443
No 329
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.90 E-value=4.6e+02 Score=30.27 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHH
Q 038916 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQ 182 (300)
Q Consensus 126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRq 182 (300)
+-.+...+|.|+. .-.-+.|+.+++-|.-+..-.+.|- ++..|...|..-|+
T Consensus 185 l~~~~~~l~~~l~-s~~~~~~L~~~q~dl~~~~~~~l~~----~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 185 LKALVDELELAQL-SANNRQELARLRSELAKKRSQQLDA----YLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3334444444444 3444555555555554444333333 44444444444333
No 330
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.69 E-value=1.3e+02 Score=24.03 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 140 VEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
++.+|++-.++.-+++.+.+.|.+|
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L 51 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREEL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4566666666666666666666666
No 331
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.53 E-value=1.4e+02 Score=24.01 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=31.4
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916 194 DKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 194 Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~~ 237 (300)
-|..|....+..+....+=..+.+|.++|+.+-.+=..|.|+-.
T Consensus 30 LKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 30 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666777788888999999888888888753
No 332
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.01 E-value=5.2e+02 Score=30.58 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=24.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~ 236 (300)
+.++-++.||-.+.+-.+-|+..-++|+--+||.+-.
T Consensus 1707 ~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1707 EKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 3444455555555566677778888888888887654
No 333
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=48.97 E-value=1.7e+02 Score=27.76 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 174 KAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 174 ~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
+.+++..+.++..+++.++.-+........ .....++.....+++.+++.+..++...
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQDKLSQYRE--GNRPQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666676666666655554422221110 1123566777777788888887776654
No 334
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.86 E-value=1.3e+02 Score=23.57 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
...+..++..+...+.+++..+.+++...
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888887765
No 335
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=48.40 E-value=1.9e+02 Score=25.46 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHH
Q 038916 111 YADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 111 ~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a 190 (300)
...+.+....-...-+|+++..---+++.++.++.++.-++.-...|...-.+. ..++..-..-+...+++++.++.+
T Consensus 40 ~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a--~~~~~~e~~~l~~a~~~~~~a~r~ 117 (152)
T PF07321_consen 40 ELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEA--EEQLEQERQALEEARKQLQQARRQ 117 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556677766666677777777777777777666666655555 245666667777777777777665
Q ss_pred hh
Q 038916 191 IE 192 (300)
Q Consensus 191 ~e 192 (300)
.+
T Consensus 118 ~e 119 (152)
T PF07321_consen 118 QE 119 (152)
T ss_pred HH
Confidence 43
No 336
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.40 E-value=99 Score=23.20 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHH
Q 038916 147 LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~ 189 (300)
+.+|..||+.|..-=..|+ ..|.+++.++...+.|-.|+-.
T Consensus 5 id~Ls~dVq~L~~kvdqLs--~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLS--SDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544443322221 1234445555555555555443
No 337
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.37 E-value=1.2e+02 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.319 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhhHHH
Q 038916 118 DKDVQMREMYDKSVQLEVDLRGVEAM 143 (300)
Q Consensus 118 e~Elq~r~l~~k~~K~EaElra~e~l 143 (300)
|-|-+|++|.++..+|..|-..++..
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777666644443
No 338
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=48.28 E-value=2.8e+02 Score=27.24 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=30.9
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHhH----hh-----cccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 143 MRSELLKV----QADIKELTAVRQELT----DL-----QQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 143 lr~El~ql----~aE~q~L~a~RqEL~----d~-----qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
.|++|.|+ +.|+.+.+-.+.|.+ ++ .--|..-+|++.+++=+.+.=..+-
T Consensus 105 YR~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq 167 (334)
T KOG0774|consen 105 YRAKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSRTRPIMPKEIERMVQIISKKFSHIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555554 467888888888887 21 1135666777777776665444433
No 339
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.02 E-value=2.1e+02 Score=25.70 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHhHHhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHY-ADSFRMDKDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~-i~~~r~e~Elq~r~l~~k~~K~EaElr 138 (300)
.+|+..|.--..+|..+-..--+..+....|++++.....++..+... ...++.-.|-=.+....+...++..+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 677777766666666666666666666677777777777777666532 222233333334555555555554443
No 340
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.01 E-value=36 Score=29.84 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.+...+++|+..+++|+...-++=||- +++..=-++-.++++|..+..++.+-++.+.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFA--kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFA--KWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888887754444444 3444333444444444444444444444443
No 341
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.77 E-value=1.5e+02 Score=26.94 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQA 152 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~a 152 (300)
+|-+.+.+|+.++..++.+-.++..++.
T Consensus 124 eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433333
No 342
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=47.66 E-value=3.2e+02 Score=28.73 Aligned_cols=91 Identities=21% Similarity=0.321 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH---h--hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchh----hhhhhhHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELT---D--LQQVPALKAEIENVKQELQRARAAIEFDKKGYA----ENYEHGQVMEKKLI 213 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~---d--~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~----e~~eQ~qaMeknli 213 (300)
-|.++.+|+.-+|.|...--=|- | .--|.++..||+--|-|..+.-+++-.|+..-. -.+.+++.+++.|-
T Consensus 477 ~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~ 556 (583)
T KOG3809|consen 477 EREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEIN 556 (583)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHH
Confidence 34455566655555543322221 1 122445555555555544444444445554333 24557777888888
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 038916 214 SMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 214 sMarEvekLRael~n~ekR~ 233 (300)
.-.-+|-+.|+-|.|-++|-
T Consensus 557 d~~e~i~~~r~~IL~Ne~rI 576 (583)
T KOG3809|consen 557 DTKEEISKARGRILNNEKRI 576 (583)
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 88889999999998877774
No 343
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=47.35 E-value=67 Score=27.14 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~ 189 (300)
.++..+++++..+.++|+-...
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~ 41 (120)
T PF09969_consen 20 EEIRELKAELEELEERLQELED 41 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3444555555555555544333
No 344
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.30 E-value=2.7e+02 Score=29.16 Aligned_cols=20 Identities=5% Similarity=0.230 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 207 aMeknlisMarEvekLRael 226 (300)
.++..|..+..|++.|++.+
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777776
No 345
>PRK11020 hypothetical protein; Provisional
Probab=46.98 E-value=92 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSE 146 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~E 146 (300)
+..+.+.+.+++++|..+...+..
T Consensus 33 i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 33 YAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555554443
No 346
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=46.77 E-value=38 Score=27.47 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
+.+|+.++++-++++.. -|..-. ...=..||=+-||+.|-..++..-- + -..+-+-.+.|+.||||+
T Consensus 13 I~EEl~RL~sH~~~f~~---~l~~~~--~~vGrkLdFl~QEm~RE~NTigSKs--~------~~~i~~~vv~~K~~iEki 79 (87)
T PF08340_consen 13 ISEELVRLKSHLKQFRE---LLESEG--EPVGRKLDFLLQEMNREINTIGSKS--N------DAEISNLVVEMKTEIEKI 79 (87)
T ss_pred hHHHHHHHHHHHHHHHH---HHhcCC--CCCCCCCccchhhhccHHHHHHHhh--c------hHHHHHHHHHHHHHHHHH
Confidence 56788888887666543 341101 1334567888899998877776432 1 235677789999999999
Q ss_pred HHHHHhHH
Q 038916 223 RAEIANSE 230 (300)
Q Consensus 223 Rael~n~e 230 (300)
|..+.|.|
T Consensus 80 REQvqNiE 87 (87)
T PF08340_consen 80 REQVQNIE 87 (87)
T ss_pred HHHHHcCC
Confidence 99998853
No 347
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.65 E-value=4.5e+02 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.065 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 213 ISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 213 isMarEvekLRael~n~ekR~ra~ 236 (300)
.....++-.+|+.++--+-|++|.
T Consensus 533 ~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 533 TRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 334444445555555444555544
No 348
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.39 E-value=3.6e+02 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ekR~ 233 (300)
|.+....+.+.|++|-+|+..-+++.
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555444444
No 349
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=46.31 E-value=1.4e+02 Score=23.08 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 174 KAEIENVKQELQRARA 189 (300)
Q Consensus 174 ~aEl~~lRqEl~r~R~ 189 (300)
...|+.+.+|+..+++
T Consensus 86 ~~~i~a~~~~~~~~~~ 101 (125)
T PF13801_consen 86 EAAIEALLEEIREAQA 101 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344443333333
No 350
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=46.20 E-value=6.7 Score=43.03 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 179 NVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 179 ~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
.++..|.-....++-.....-+...+...+++.+..|..|++.|+.+++.+++
T Consensus 578 k~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r 630 (859)
T PF01576_consen 578 KLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAER 630 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555566677788899999999999999999999998876
No 351
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.07 E-value=2.5e+02 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRM 117 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~ 117 (300)
..+|..+..-..|+..|...-+........+..+........+-|...|.++..
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777666666666666666666666666666666555555443
No 352
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.80 E-value=2.5e+02 Score=25.95 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 038916 179 NVKQELQRARAAIEFDK 195 (300)
Q Consensus 179 ~lRqEl~r~R~a~e~Ek 195 (300)
.+..+|..+..+|+.|+
T Consensus 125 ~l~~~l~~l~~~~~~Er 141 (247)
T PF06705_consen 125 ELVRELNELQEAFENER 141 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555666555
No 353
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=45.57 E-value=2.2e+02 Score=27.51 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--hhcccHHHHHHHHHHHHHHHHHHHHhhhhh--hchhhhhhhhHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT--DLQQVPALKAEIENVKQELQRARAAIEFDK--KGYAENYEHGQVMEKKLISMA 216 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~--d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek--k~~~e~~eQ~qaMeknlisMa 216 (300)
+++..||+|-=-++ .+++..+. ..+||..+...++.||=|=.+ -+++-.+ +.-...+-....+++.+..+.
T Consensus 160 d~l~~eLqkr~~~v---~~l~~q~~k~~~~qv~~in~qlErLRL~krr--lQl~g~Ld~~~q~~~~ae~seLq~r~~~l~ 234 (289)
T COG4985 160 DPLERELQKRLLEV---ETLRDQVDKMVEQQVRVINSQLERLRLEKRR--LQLNGQLDDEFQQHYVAEKSELQKRLAQLQ 234 (289)
T ss_pred cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443333 33333333 337788888888888754433 3443322 122222233344555566666
Q ss_pred HHHHHHHHHH
Q 038916 217 RELEKLRAEI 226 (300)
Q Consensus 217 rEvekLRael 226 (300)
-|+.-||+|+
T Consensus 235 ~~L~~L~~e~ 244 (289)
T COG4985 235 TELDALRAEL 244 (289)
T ss_pred HHHHHHhhhh
Confidence 6666666665
No 354
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=45.34 E-value=39 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHH
Q 038916 116 RMDKDVQMREMYDKSVQLEVDLRGVEAMRSEL 147 (300)
Q Consensus 116 r~e~Elq~r~l~~k~~K~EaElra~e~lr~El 147 (300)
|..-|++.-+|..+++.||.|.++.+.++.+|
T Consensus 20 R~~WeiERaEmkarIa~LEGE~r~~e~l~~dL 51 (134)
T PF08232_consen 20 RNQWEIERAEMKARIAFLEGERRGQENLKKDL 51 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888888888777777764
No 355
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=45.19 E-value=1.2e+02 Score=31.17 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHH----------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALK----------QELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQL 133 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLr----------qeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~ 133 (300)
.+||++...-...++.|+.-...+ |...|. ..+..+-++.- -+.+-..|+..|+=+-..++|++-|
T Consensus 257 P~ieee~~~~~~~L~~Lv~~~~~~--t~enL~k~sa~~l~ITrgVIeALr~~P--dq~~l~~RLA~EiA~a~~~ekALl~ 332 (418)
T TIGR03755 257 PLIEEEYDSNLEALQKLVSGATPP--TQENLAKASSPSLPITRGVIEALREDP--DQSLLVQRLASEIALADTLEKALLM 332 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC--CHHHHHHhcCCCccccHHHHHHHHhCh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988889999999887654 222222 22222222221 2234556777888888888888887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHH
Q 038916 134 EVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQEL 184 (300)
Q Consensus 134 EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl 184 (300)
..-|.+.. -+-++.....++.|++ +.+..|..||++|+-|+
T Consensus 333 RR~L~tG~--------~ePnva~~~~A~~~~~--~~i~~LDrEI~~Lk~E~ 373 (418)
T TIGR03755 333 RRMLLTGL--------QEPNVAANKPAQQEVD--KAIDKLDREINNLKTEL 373 (418)
T ss_pred HHHHHhcc--------cCcccccCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 76655321 1233444444555551 33455555555555544
No 356
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.09 E-value=46 Score=23.62 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
++..+..++.+|.++|++++..-..
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888865443
No 357
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.91 E-value=1.9e+02 Score=26.69 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLR 223 (300)
|+..+|.=|.+=.+|++.||
T Consensus 175 QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 175 QVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55566666666666666664
No 358
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.78 E-value=1.4e+02 Score=24.37 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhHHH
Q 038916 216 ARELEKLRAEIANSEK 231 (300)
Q Consensus 216 arEvekLRael~n~ek 231 (300)
..+|+++.+++.++..
T Consensus 57 ~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 57 SEKLEKLEKELKKSRQ 72 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 359
>PLN02939 transferase, transferring glycosyl groups
Probab=44.70 E-value=5.3e+02 Score=29.45 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHHHHHhhhhhc----cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADN----QRLAATHVALKQELEVAQYELQRMVHYA 112 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dN----qRLa~~h~aLrqeLaa~~~Elq~L~~~i 112 (300)
.+||+.|+.-..||-.=..+- ..|...-..|+.|-...+.+|+.|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 197 EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred hhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566666555444432211111 1133344455555555555555555433
No 360
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.58 E-value=3.5e+02 Score=29.90 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=64.1
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhh----HHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAAT----HVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVD 136 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~----h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaE 136 (300)
.=+++-+..-..||+++-..-+-..-+ -..-++.|+.++.=|..|.+.|..+|.- .|..+.++...+-+|+=-
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~A 115 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFA 115 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 345555555556666543222221111 1223445555555555555555555542 444555555555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhH-------------------------hhcccHHHHHHHHHHHHHHHHHH
Q 038916 137 LRGVEAMRSELLKVQADIKELTAVRQELT-------------------------DLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 137 lra~e~lr~El~ql~aE~q~L~a~RqEL~-------------------------d~qQv~al~aEl~~lRqEl~r~R 188 (300)
=|.+..---=|.+|++=+-.++.++.-++ ++-+|..|...|+.+++.|..+.
T Consensus 116 KkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi 192 (793)
T KOG2180|consen 116 KKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQI 192 (793)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322334455554444333333332 56678888999999999887754
No 361
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.52 E-value=90 Score=29.07 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKK 196 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk 196 (300)
.+|..++.+++-+-|+|...|+-|- |..|+..++.+-. +++...|++|+.||.
T Consensus 48 ~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~---~~~e~~r~~fekekq 101 (228)
T PRK06800 48 KSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQM---KEIEAARQQFQKEQQ 101 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
No 362
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=44.41 E-value=2.3e+02 Score=25.22 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=50.4
Q ss_pred HHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHh---h-----hhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 157 LTAVRQELTDL-QQVPALKAEIENVKQELQRARAAI---E-----FDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 157 L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~---e-----~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
...+++||.++ .+|....++.|.|.+....+|.-+ . |..+--.+-|++...+..+|..++.+-..||.--+
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD 108 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRD 108 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455433 235666677777777766666655 1 12222345688888888999999998888888776
Q ss_pred hHHHHHH
Q 038916 228 NSEKRAR 234 (300)
Q Consensus 228 n~ekR~r 234 (300)
.-+.|.+
T Consensus 109 ~LErrl~ 115 (159)
T PF05384_consen 109 ELERRLR 115 (159)
T ss_pred HHHHHHH
Confidence 6666554
No 363
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=44.34 E-value=2.8e+02 Score=26.08 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.0
Q ss_pred HHHhhhhh
Q 038916 188 RAAIEFDK 195 (300)
Q Consensus 188 R~a~e~Ek 195 (300)
+..++.|+
T Consensus 107 ~~~ie~Ek 114 (250)
T PRK14474 107 LEQLEREK 114 (250)
T ss_pred HHHHHHHH
Confidence 33333333
No 364
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.26 E-value=2.7e+02 Score=25.92 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHH-------HHHHHhhhhhhchhhhhhhh----HHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQ-------RARAAIEFDKKGYAENYEHG----QVMEKKLISMARELEKL 222 (300)
Q Consensus 170 v~al~aEl~~lRqEl~-------r~R~a~e~Ekk~~~e~~eQ~----qaMeknlisMarEvekL 222 (300)
+..|+.+++.|+.||. ..+..|+.|...-.+.=+.| +-+..|++.|=+=-+.|
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~L 196 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQAL 196 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666665 45568888887766655544 34556777775543333
No 365
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.25 E-value=5e+02 Score=29.10 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 038916 64 AIIEEHL 70 (300)
Q Consensus 64 ~~lEe~l 70 (300)
.+|++-+
T Consensus 167 ~il~~l~ 173 (1042)
T TIGR00618 167 ELLMNLF 173 (1042)
T ss_pred HHHHHHh
Confidence 4554433
No 366
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=44.20 E-value=3.2e+02 Score=28.77 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhhh--chhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 183 ELQRARAAIEFDKK--GYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 183 El~r~R~a~e~Ekk--~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
++.+.+.-++|++. ....+-.|.+..+|+ -||.||++.+-
T Consensus 377 ~~ec~~~e~e~~~~~~~r~~~~~qski~dk~-----~el~kl~~~l~ 418 (554)
T KOG4677|consen 377 FYECFYHETEAEGTFSSRVNLKKQSKIPDKQ-----YELTKLAARLK 418 (554)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhccCcchH-----HHHHHHHHHHH
Confidence 33444455555542 123334455555554 47788888763
No 367
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=43.95 E-value=3.3e+02 Score=26.95 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=28.6
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e 118 (300)
+|+..+-.+-..|++....|+-.+.+.+.|++-|..-.-+.+.+
T Consensus 37 QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e 80 (389)
T KOG4687|consen 37 QDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIE 80 (389)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhh
Confidence 34445555556677777778888888888887776544444444
No 368
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.83 E-value=2.4e+02 Score=25.27 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYELQRMV 109 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~ 109 (300)
..|+|-|.....+|..+.
T Consensus 26 ~~l~q~ird~e~~l~~a~ 43 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKAR 43 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555544444444444
No 369
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.76 E-value=89 Score=23.46 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF 115 (300)
Q Consensus 74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~ 115 (300)
-.+|+.|-..-..|..+..+|+.++.+++.|..|-+.-++|+
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777888888888888888999887776655554
No 370
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=43.58 E-value=3e+02 Score=26.33 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=28.9
Q ss_pred HHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916 188 RAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 188 R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~r 234 (300)
|--++||| .++..+||.==+||-=|-+..+..||.+
T Consensus 201 RDELefEK-----------EvKN~FIS~Ll~VQnrqre~r~~~kkk~ 236 (244)
T PF07763_consen 201 RDELEFEK-----------EVKNTFISLLLEVQNRQREQRELAKKKR 236 (244)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66678888 8888999999999998888866655543
No 371
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=43.42 E-value=66 Score=28.60 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=42.7
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh-hhhHHHHHHHHHHHHHHHH
Q 038916 167 LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY-EHGQVMEKKLISMARELEK 221 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~-eQ~qaMeknlisMarEvek 221 (300)
.-+|.+.+.+|..|+.|..|+-+.+.-++..-.+.| -|...|.++|.++..-|+-
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~ 72 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQA 72 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 356778888899999999999888887776666655 4788888888888776653
No 372
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=43.28 E-value=2.7e+02 Score=25.59 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=26.3
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038916 80 LLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRM 117 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~ 117 (300)
++.+-...-..-..|++.+..+=.++..+..-+.+.+.
T Consensus 29 ~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 29 FLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 55566666666777777777777777777766666644
No 373
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.09 E-value=1.1e+02 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=13.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHh
Q 038916 167 LQQVPALKAEIENVKQELQRARAAI 191 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~ 191 (300)
+..|.--..|.-.|+.|+.+.+.-+
T Consensus 43 nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 43 NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666655433
No 374
>PLN02281 chlorophyllide a oxygenase
Probab=42.93 E-value=55 Score=34.51 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=27.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
|.+.|..++.||..|++||..+-+++-..-.+-..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (536)
T PLN02281 119 EYKSIGTVKKELAGLQEELSKAHQQVHISEARVST 153 (536)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 44899999999999999999988877665544433
No 375
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.46 E-value=5.9e+02 Score=29.39 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHh-hhhhhh----hhhHHHHHHHHHHHHHhHHhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVH-YADSFR----MDKDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~-~i~~~r----~e~Elq~r~l~~k~~K~EaElr 138 (300)
.-+++++.--..|+-.+.-.=.-|..+-..++.+|+..++..+-|.+ ...--+ .|+|--+|.-+.+....=.+..
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~k 410 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTK 410 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555666666666666666666677777777777777777666652 111111 2455555555555444433333
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHH
Q 038916 139 GVEA-MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAR 217 (300)
Q Consensus 139 a~e~-lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMar 217 (300)
..+. +..|+..++++..+...--++| ...|...+-++.-.-+-++..|...-+.+.-.+.+=.+=-.+..
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l---------~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~ 481 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKEL---------ESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS 481 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 4445555555555544444444 23333333222222222222333333333333333333344555
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 038916 218 ELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 218 EvekLRael~n~ekR~ra~~ 237 (300)
.++.++.+|..+++.+++..
T Consensus 482 ~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 482 LIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66677777777777777753
No 376
>PRK11281 hypothetical protein; Provisional
Probab=42.33 E-value=6e+02 Score=29.39 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=5.0
Q ss_pred HHHHHHHHHh
Q 038916 64 AIIEEHLAAQ 73 (300)
Q Consensus 64 ~~lEe~la~Q 73 (300)
.-||.+|+.-
T Consensus 124 ~qLEq~L~q~ 133 (1113)
T PRK11281 124 RQLESRLAQT 133 (1113)
T ss_pred HHHHHHHHHH
Confidence 3366655433
No 377
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.03 E-value=2.5e+02 Score=24.94 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
.+|++|-..-..+|..--....-...-....+++|..++.|.+.+.
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~ 82 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLK 82 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444433333222333333334445555555555555554
No 378
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=42.00 E-value=1.3e+02 Score=30.14 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR 232 (300)
.|||-...|++-.+++|..++--+|.
T Consensus 280 d~eK~~~~i~q~eeq~rkr~eE~~k~ 305 (410)
T KOG4715|consen 280 DMEKMAAEIAQAEEQARKRQEEREKE 305 (410)
T ss_pred cHHHHHHHHHHHHHHHHHhHhHHHhh
Confidence 46666666777777777766544443
No 379
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.73 E-value=1.7e+02 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 142 AMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.+...+.++..+++.+..+..||+
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666665
No 380
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.66 E-value=1.2e+02 Score=31.56 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 038916 218 ELEKLRAEIAN 228 (300)
Q Consensus 218 EvekLRael~n 228 (300)
.++.|-..|++
T Consensus 131 ~l~~l~~~l~~ 141 (472)
T TIGR03752 131 LIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHhh
Confidence 33334334433
No 381
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.45 E-value=6.2e+02 Score=29.32 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=3.9
Q ss_pred hhhHHHHHHH
Q 038916 203 EHGQVMEKKL 212 (300)
Q Consensus 203 eQ~qaMeknl 212 (300)
+.++.++++|
T Consensus 324 ~~ie~~ek~l 333 (1141)
T KOG0018|consen 324 ETIERLEKEL 333 (1141)
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 382
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.11 E-value=1.5e+02 Score=23.26 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
....+-+++..+|.=|+.+|+++..
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888899999999988765
No 383
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=41.09 E-value=2.7e+02 Score=25.07 Aligned_cols=111 Identities=20% Similarity=0.290 Sum_probs=51.4
Q ss_pred HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh-HHH
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV-EAM 143 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~-e~l 143 (300)
....++..-..+...++.+-++=|.+.. ++-+..+++|+..+.. .+|.|+ ..--....++|..+..- +.|
T Consensus 24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~--ke~~~eakee~~~~r~-----~~E~E~--~~~~~el~~~E~rl~~rE~~L 94 (201)
T PF12072_consen 24 INRKKLEQAEKEAEQILEEAEREAEAIK--KEAELEAKEEAQKLRQ-----ELEREL--KERRKELQRLEKRLQQREEQL 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455445555556666555443332 4445555555544441 122332 33333444455544433 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHH
Q 038916 144 RSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQEL 184 (300)
Q Consensus 144 r~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl 184 (300)
..+...+...-+.|....++|. ....+.....+++.+.++.
T Consensus 95 ~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 95 DRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554 1223444455555444433
No 384
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=41.00 E-value=4.4e+02 Score=27.50 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhHh-hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 150 VQADIKELTAVRQELTD-LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 150 l~aE~q~L~a~RqEL~d-~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+.-....|..-.++|.. .+.+....++|+.+.+|+...+.....++ -....|-+-+|-+.=|..+..|+.+
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~l-e~~a~lt~~eak~~l~~~~~~~~~~ 163 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL-ERISGLTQEEAKEILLEEVEEEARH 163 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 33333344444444432 23355666666666666666555554443 2233344444444445555444443
No 385
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.99 E-value=3.2e+02 Score=25.92 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKL 222 (300)
Q Consensus 208 MeknlisMarEvekL 222 (300)
...++..|..||+.|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 455667777777766
No 386
>smart00338 BRLZ basic region leucin zipper.
Probab=40.88 E-value=85 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 146 ELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL 164 (300)
.+..|+.+++.|...-.+|
T Consensus 27 ~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 27 EIEELERKVEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444
No 387
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=40.73 E-value=2.8e+02 Score=25.05 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038916 93 ALKQELEVAQYELQRMV 109 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~ 109 (300)
.||.||.-...||+.|.
T Consensus 33 eLr~EL~KvEeEI~TLr 49 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLR 49 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 388
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.71 E-value=1.8e+02 Score=25.92 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R 188 (300)
+|..+..+|..++++|...-
T Consensus 44 ~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 44 QIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777776654
No 389
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.54 E-value=4.7e+02 Score=27.70 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchh
Q 038916 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYA 199 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~ 199 (300)
+-++-+|......++.-.. .+.+|..-+.--+...+..|+-+ ..++......+..|..||.-.|.-+|--. .
T Consensus 419 ~~RI~eLt~qlQ~adSKa~---~f~~Ec~aL~~rL~~aE~ek~~l--~eeL~~a~~~i~~LqDEL~TTr~NYE~QL---s 490 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAV---HFYAECRALQKRLESAEKEKESL--EEELKEANQNISRLQDELETTRRNYEEQL---S 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHH---H
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLR 223 (300)
.--||+-.|-.+|..-.-||+.|+
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 390
>PRK14156 heat shock protein GrpE; Provisional
Probab=40.39 E-value=53 Score=29.69 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=34.5
Q ss_pred HhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 163 ELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 163 EL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
|....+++..+.++++.++..+.|+.+-|+.=+|+.....++.
T Consensus 29 ~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~ 71 (177)
T PRK14156 29 ETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL 71 (177)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335678889999999999999999998888888877766663
No 391
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=40.01 E-value=2.9e+02 Score=25.07 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHH
Q 038916 142 AMRSELLKVQADIKELTAVRQ--------ELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL 212 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~Rq--------EL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknl 212 (300)
..+++|.+..+|+.+|..-.+ ++. .++.|.....||+...+ +..|.++..|+++|--.++....+=+..
T Consensus 113 ~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~--~~~r~al~EERrRyc~lv~~~~~~~~~~ 190 (219)
T PF08397_consen 113 RKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEK--QSLREALLEERRRYCFLVEKHCSVVKSE 190 (219)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555565554432211 221 12456666777776555 3667999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHH
Q 038916 213 ISMARE-LEKLRAEIA 227 (300)
Q Consensus 213 isMarE-vekLRael~ 227 (300)
.+|-.| ++.|..-+.
T Consensus 191 ~~~~~~~~~~L~~~~~ 206 (219)
T PF08397_consen 191 LAFHNEAVEHLQEKLD 206 (219)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 999999 888888775
No 392
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.92 E-value=1.7e+02 Score=22.53 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHH
Q 038916 117 MDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQ 182 (300)
Q Consensus 117 ~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRq 182 (300)
.|+|-+|-.|++..-+|....- ....-+.+|++.+..+.....+|. .++..+.++++.++.
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el---~~~~~IKKLr~~~~e~e~~~~~l~--~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKEL---KLNNTIKKLRAKIKELEKQIKELK--KKLEELEKELESLEE 68 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5677777777777766663322 233334555665555555544442 234444445555444
No 393
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.69 E-value=2.5e+02 Score=28.83 Aligned_cols=123 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHH
Q 038916 96 QELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKA 175 (300)
Q Consensus 96 qeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~a 175 (300)
.++....+||..|.+.-.+...+--.-|..+..++.++-. .-.--..-..=..|...-.+|......| +.+|..|..
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~~sd~L--l~kVdDLQD 227 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSEESDRL--LTKVDDLQD 227 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 176 EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 176 El~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
=++.||+.... .+..-...|+.+|.++|.....+|.++-.-|..++
T Consensus 228 ~VE~LRkDV~~---------RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 228 LVEDLRKDVVQ---------RGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHHHH---------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 394
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=39.64 E-value=3.1e+02 Score=25.37 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=45.8
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQR--MVHYADSFRMDKDVQMRE 125 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~--L~~~i~~~r~e~Elq~r~ 125 (300)
.+..+..+.||..=+.|+..-.+|-..|.+.++++..-+.|-+. .-+.+..++.+++-+.++
T Consensus 63 eiV~~L~eiQ~~~Ek~L~~qR~~L~~~h~~e~~~l~~k~~~~~~~~~~h~l~~lk~~~~~e~~~ 126 (196)
T PF07324_consen 63 EIVKGLLEIQHLTEKNLLQQRLKLLNEHKIEKQELRQKHKEEQQACKPHNLPLLKTKHEKELEE 126 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhcchhhHHHHHHHHHHHHHH
Confidence 67777888888888888888889999999999999887776654 333445555555555554
No 395
>PRK13824 replication initiation protein RepC; Provisional
Probab=39.51 E-value=1.6e+02 Score=29.81 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 122 QMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 122 q~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
+..++..-+.++++|.+.+..+|+++.-++-|+.++...-.|.
T Consensus 147 R~~El~~~A~~~~ae~~~~r~lr~~it~~rRdi~~li~~a~~~ 189 (404)
T PRK13824 147 RAEEFEALAEQVAAERKALRRLRERLTLCRRDIAKLIEAAIEE 189 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777778888888888999999999999998888665543
No 396
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=39.21 E-value=1e+02 Score=24.11 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH------h--hcccHHHHHHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT------D--LQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~------d--~qQv~al~aEl~~lRqEl~r 186 (300)
+++.-|.-+++- +|...||||+ | ..-|.-+..|.+.+|++|..
T Consensus 18 Da~mLE~f~LRk---~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 18 DALMLENFTLRK---QLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 445555555554 6777888887 2 23466677777877777653
No 397
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.15 E-value=1.4e+02 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRae 225 (300)
.++.++++|..-..|++.|+..
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 398
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.92 E-value=6.1e+02 Score=28.55 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
++|.+..++|-.++.||...-.-+-.+-+++..+|.--.+---|++.|-+++.+
T Consensus 783 krIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~ 836 (1104)
T COG4913 783 KRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTE 836 (1104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhh
Confidence 457888888888888888877766666666666655444444455555444443
No 399
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=38.85 E-value=2.5e+02 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHH
Q 038916 184 LQRARAAIEFDKKGYAENYEHGQVMEKKLISMAREL 219 (300)
Q Consensus 184 l~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEv 219 (300)
+..++..++.|++.... .+++++.+++-++
T Consensus 106 ~~~a~~~I~~ek~~a~~------~L~~~i~~la~~~ 135 (164)
T PRK14473 106 KEEARAQAEQERQRMLS------ELKSQIADLVTLT 135 (164)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 33677777777765555 4445555555443
No 400
>PLN02769 Probable galacturonosyltransferase
Probab=38.78 E-value=1.8e+02 Score=31.36 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAREL 219 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEv 219 (300)
++-||+.|-.+++=+-.+...+... .+..||..-=||++|.-....-+...-..-.+-+++|+..|...++-.
T Consensus 183 ~~~l~Dql~~Ak~y~~~iak~~~~~-------~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~ 255 (629)
T PLN02769 183 VKRLKDQLFVARAYYPSIAKLPGQE-------KLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCP 255 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcH-------HHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhc
Confidence 4456666666665443443333333 334444444456666655555554444445567778877777666665
Q ss_pred -------HHHHHHHHhHHHHHHH
Q 038916 220 -------EKLRAEIANSEKRARA 235 (300)
Q Consensus 220 -------ekLRael~n~ekR~ra 235 (300)
-|||+-|...|.++++
T Consensus 256 ~dc~~~~~klr~~l~~~E~~~~~ 278 (629)
T PLN02769 256 VDCNNVDRKLRQILDMTEDEAHF 278 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888776664
No 401
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=38.63 E-value=2.4e+02 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038916 171 PALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e 192 (300)
.....+|....++|+...+.+.
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~ 100 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQ 100 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444443
No 402
>PRK14163 heat shock protein GrpE; Provisional
Probab=38.53 E-value=62 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ 206 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~q 206 (300)
+++..+.++++.++..+.|+.+-|+.=+|+...+.+...
T Consensus 47 ~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 85 (214)
T PRK14163 47 AQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVK 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777777766666544
No 403
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.21 E-value=3.8e+02 Score=25.89 Aligned_cols=16 Identities=6% Similarity=0.349 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhH
Q 038916 214 SMARELEKLRAEIANS 229 (300)
Q Consensus 214 sMarEvekLRael~n~ 229 (300)
++..++..+++.++++
T Consensus 162 ~~~~~l~~~~~~l~~~ 177 (370)
T PRK11578 162 TIDAQIKRNQASLDTA 177 (370)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=38.07 E-value=4.9e+02 Score=27.22 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHH
Q 038916 95 KQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV-EAMRSELLKVQADIKELTAVRQELTDLQQVPAL 173 (300)
Q Consensus 95 rqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~-e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al 173 (300)
-..|..+.+.|..+..+...+ .++.+....+-.++..+ +.++..+..+..|-..|..+-.-| ..+..|
T Consensus 243 ~~~l~~~~~~l~~~~~~d~~~--------~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl---~~l~~L 311 (553)
T PRK10869 243 LSQLYSAKQLLSELIGMDSKL--------SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRL---SKQISL 311 (553)
T ss_pred HHHHHHHHHHHHHHhhhCHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH---HHHHHH
Confidence 345666666666664332222 23333333333333322 233344444455555555555555 222222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 174 KAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 174 ~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+..-..-=.|+...+..+..|++.....-+.+..+++.+..+..++.++...|....|+
T Consensus 312 ~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 312 ARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222333333333333344557788888888888888888888755444
No 405
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.00 E-value=2.6e+02 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHH
Q 038916 139 GVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIE 178 (300)
Q Consensus 139 a~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~ 178 (300)
++..|-+.|.|+.. .|.+.|.+|+ |+|..+-..||
T Consensus 44 A~~~v~kql~~vs~---~l~~tKkhLs--qRId~vd~klD 78 (126)
T PF07889_consen 44 AVASVSKQLEQVSE---SLSSTKKHLS--QRIDRVDDKLD 78 (126)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHhhHH
Confidence 44555556666666 5666777774 33444433333
No 406
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=37.95 E-value=2.9e+02 Score=27.61 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 038916 94 LKQELEVAQYEL 105 (300)
Q Consensus 94 LrqeLaa~~~El 105 (300)
.+..|+.++-.|
T Consensus 89 y~~al~qAea~l 100 (352)
T COG1566 89 YRAALEQAEAAL 100 (352)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 407
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.66 E-value=5.9e+02 Score=28.01 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R 188 (300)
-|+-+..|++.++-++-+++
T Consensus 276 tv~~LqeE~e~Lqskl~~~~ 295 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLE 295 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 36777777777777666544
No 408
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=2.6e+02 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~ 227 (300)
.+.++++....+..++++|+++|-
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777777763
No 409
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.58 E-value=1.3e+02 Score=23.16 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 146 ELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
++.++..-+..|....++| ...=..|++++.++..|=...+...+.-..+--.-+...++||.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L--~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERL--KSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQH 64 (65)
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
No 410
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.57 E-value=2.7e+02 Score=24.03 Aligned_cols=35 Identities=9% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELT 158 (300)
Q Consensus 121 lq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~ 158 (300)
-++..+-+...+.|-+|. +|...+.+++.|+.++.
T Consensus 21 ~~~K~le~~~~~~E~EI~---sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEIT---SLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 334444444455554443 33344444444444333
No 411
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.49 E-value=1.9e+02 Score=22.36 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~ra~ 236 (300)
++..+-..+..|.++|+.+-.....|.++-
T Consensus 36 ~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 36 ELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788888888888888777777764
No 412
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=37.46 E-value=3.3e+02 Score=24.98 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHHHHhhh----hhccc---hhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLL----ADNQR---LAATHVALKQELEVAQYELQRMVHYADSF 115 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~----~dNqR---La~~h~aLrqeLaa~~~Elq~L~~~i~~~ 115 (300)
.-||.+|.....++..+- ..|-. +-..+..+++.|..+.+.++-+.....+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678888766555544322 22222 33445666777777777776666555544
No 413
>PRK14161 heat shock protein GrpE; Provisional
Probab=37.33 E-value=62 Score=29.18 Aligned_cols=17 Identities=59% Similarity=0.808 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQR 186 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r 186 (300)
+..+.++++.++..+.|
T Consensus 28 i~~l~~e~~elkd~~lR 44 (178)
T PRK14161 28 ITALKAEIEELKDKLIR 44 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 414
>smart00721 BAR BAR domain.
Probab=37.33 E-value=2.9e+02 Score=24.33 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADS----FRMDKDVQMREMYDKSVQLEVDLRG 139 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~----~r~e~Elq~r~l~~k~~K~EaElra 139 (300)
.-+|.++...+..+++|..+=........+++..+.+...=...+...... --...+..+...+++.-....+
T Consensus 30 ~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 106 (239)
T smart00721 30 EELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKK--- 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHH---
Confidence 678888888888888888777766633345555544443211122111111 1111111122222221111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-HhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc--hhhhhhhhHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQEL-TDLQQVPALKAEIENVKQELQRARAAIEFDKKG--YAENYEHGQVMEKKLISMA 216 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL-~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~--~~e~~eQ~qaMeknlisMa 216 (300)
+-.++.++.+ .+-.-+..++..+ ++...+...+..++..+.++.+++.-++.=++. ... .+.+...+.+|..-.
T Consensus 107 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~-~~kl~~~e~el~~ak 183 (239)
T smart00721 107 LLQVEESLSQ--VKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKK-DEKLAKAEEELRKAK 183 (239)
T ss_pred HHhhHHHHHH--HHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh-hhhhhhHHHHHHHHH
Confidence 1122222211 1112233333333 134566666666666666666666655432221 111 124555566666666
Q ss_pred HHHHHHHHHHH
Q 038916 217 RELEKLRAEIA 227 (300)
Q Consensus 217 rEvekLRael~ 227 (300)
.+.+.++.++.
T Consensus 184 ~~fe~~~~~l~ 194 (239)
T smart00721 184 QEFEESNAQLV 194 (239)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 415
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=37.32 E-value=7.4e+02 Score=29.02 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae 225 (300)
...+.--+.|-.++.+..+.+|-.+ ..++.+++---.+|..|.+||.=||.|
T Consensus 1095 eKvr~rYe~LI~~iTKrIt~LEk~k---~~~l~~ikK~ia~lnnlqqElklLRnE 1146 (1439)
T PF12252_consen 1095 EKVRVRYETLITDITKRITDLEKAK---LDNLDSIKKAIANLNNLQQELKLLRNE 1146 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444445566666666666666554 566667777777777777777777754
No 416
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=37.30 E-value=50 Score=37.36 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhhCCCCCCcccCCCCCCCCCCC-CCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 038916 237 AAVGNPGASFNTNYGTPEAGYPS-NPYPVSYSMNPVQAGAETYPHYGPGPGSW 288 (300)
Q Consensus 237 ~a~~~p~~~y~~~~gnp~~~y~~-~~y~d~Y~~~~~~~~~~~~~~y~~g~~~~ 288 (300)
+..|+=+..=|+.|+||+.||.| +-+++|-|.+.+-+|.-++..-|.+.+.|
T Consensus 1230 vsrgGfrnnggGdyrnpgggyrgsGGfgrgggrgagggGgfg~G~~Gg~~~n~ 1282 (1282)
T KOG0921|consen 1230 VSRGGFRNNGGGDYRNPGGGYRGSGGFGRGGGRGAGGGGGFGGGGRGGNASNW 1282 (1282)
T ss_pred ccCCccccCCCCCCCCCCCCccCCCCcCCCCCCCCCCCCCCCCCCccccccCC
No 417
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.10 E-value=63 Score=26.26 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~ 229 (300)
++..++..+.+..+|++.|+..|+++
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888899999999999988754
No 418
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=37.10 E-value=2.7e+02 Score=23.92 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 180 VKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 180 lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+-||+.+.++. |+|. ...-+++.+-.+..++.++..|-.+|..|+
T Consensus 75 VtqE~akK~qq-efe~-s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 75 VTQELAKKKQQ-EFES-SHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHH-HHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33444443332 3332 334567777788888888888888888876
No 419
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=37.02 E-value=3.7e+02 Score=27.66 Aligned_cols=80 Identities=26% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHH----HHHHHHHHHHH------
Q 038916 149 KVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV----MEKKLISMARE------ 218 (300)
Q Consensus 149 ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qa----MeknlisMarE------ 218 (300)
+++-..+.|...-+|+ .-+..+.+..+||||.+|.+++.=...-...-+|.+. |+..++...+|
T Consensus 140 ~~~~~~q~lq~~~~~~------er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 140 KLREYHQQLQEKSLEY------ERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred HHHHHHHHHhHHHHHH
Q 038916 219 LEKLRAEIANSEKRAR 234 (300)
Q Consensus 219 vekLRael~n~ekR~r 234 (300)
-||+-+.|++-..+.+
T Consensus 214 ~e~~~~~~a~N~~~~k 229 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLK 229 (464)
T ss_pred hHHHHHHHHhhhHHHH
No 420
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=2.4e+02 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~n~e 230 (300)
+++-.++.+++++.+-++|++.+|.+-+
T Consensus 161 ~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 161 RALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444566677788888889998887765
No 421
>PRK10865 protein disaggregation chaperone; Provisional
Probab=36.85 E-value=2.6e+02 Score=30.89 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038916 172 ALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e 192 (300)
.++.+++.+++|+...+..+.
T Consensus 443 ~l~~~l~~lq~e~~~L~eq~k 463 (857)
T PRK10865 443 MLNEELSDKERQYSELEEEWK 463 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333
No 422
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.84 E-value=1.1e+02 Score=24.41 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 038916 129 KSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL 167 (300)
Q Consensus 129 k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~ 167 (300)
|+-|+.+|+.. .++++..+.+-++.|...++|+.+.
T Consensus 2 KleKi~~eieK---~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 2 KLEKIRAEIEK---TKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666653 4456666667777777777777643
No 423
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=36.82 E-value=67 Score=28.61 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 038916 65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQ 132 (300)
Q Consensus 65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K 132 (300)
.+.+.|..-..|=++|-.+-+||-.....|+.++..+++.+|.-- -..+.++.|..-...+.-..+
T Consensus 12 ~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se--~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESE--QEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcCcchHHHHHHHHHhcc
Confidence 345556666666677777888888888888888888888886555 445556655554333333333
No 424
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=36.81 E-value=1.9e+02 Score=27.98 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~ra~~ 237 (300)
.+++.+......++.++..+++. +.+|++
T Consensus 162 ~~~~~l~~~~~~l~~~~~~l~~~--~I~AP~ 190 (370)
T PRK11578 162 TIDAQIKRNQASLDTAKTNLDYT--RIVAPM 190 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--EEECCC
Confidence 44445555566666666666543 344543
No 425
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.73 E-value=4.2e+02 Score=26.05 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHH----HHHHHHHHHHHHHHH-HHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRS----ELLKVQADIKELTAV-RQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG 197 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~----El~ql~aE~q~L~a~-RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~ 197 (300)
+..+..+...+|.++..+..-.. ++..+++.+..+... .+|+. +-+..+..++..+++.+...++.++ .
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~--~~~~~~~~~~~~~~~~~~~l~~~l~----~ 329 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIK--KVTSSVGTNSRILKQREAELREALE----N 329 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 45566677777777665543222 244555543333322 12220 1123344455555555555555444 2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 198 YAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 198 ~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
....+..+...+.++..+.||++-.+.-+...-+|.
T Consensus 330 ~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 330 QKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888899999988888876554443
No 426
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.70 E-value=4.4e+02 Score=26.23 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhhhchhhh--------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 181 KQELQRARAAIEFDKKGYAEN--------YEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 181 RqEl~r~R~a~e~Ekk~~~e~--------~eQ~qaMeknlisMarEvekLRael~ 227 (300)
...|..+..+.++-....+.. =-|...+.++|-.|-++|+.|+.+|.
T Consensus 235 ~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 235 ANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333332 23445566666666666666666664
No 427
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.46 E-value=2e+02 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=15.7
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVA 93 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~a 93 (300)
|+..|+.-...|..|+.+-+.|..+...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~ 30 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELK 30 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666665555544433
No 428
>PRK14151 heat shock protein GrpE; Provisional
Probab=36.41 E-value=72 Score=28.72 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYE 203 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e 203 (300)
++..+.++++.++..+.|+.+-|+.=+|+.....+
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e 62 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVE 62 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666656555555544433
No 429
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.39 E-value=1.8e+02 Score=21.75 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 175 AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 175 aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
.+++..=.|..-....++.|.... .......|...|.+.+.++.+|+.+|
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~--p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSL--PPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444556677776533 44666777777777888887777766
No 430
>PRK14157 heat shock protein GrpE; Provisional
Probab=36.34 E-value=68 Score=30.25 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
.++..+++|++.++..+.|+.+-|+.=+|+.....+..
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999998888888887777777766655543
No 431
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.15 E-value=2.8e+02 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
+..++.+.+.+.+..+.+++++|..++..
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555543
No 432
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.44 E-value=63 Score=26.57 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~ra~~ 237 (300)
.++..-..+.+||+.|+..-++.|+++|...
T Consensus 45 ~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 45 KLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
Confidence 4455556677777777776678888888764
No 433
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.32 E-value=3.6e+02 Score=24.78 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElr 138 (300)
|..+-+.+..+++.-+.+. +.+++..+++|+.|. -+..++...|-.|..|-....+++++..
T Consensus 41 l~s~y~~q~~~Lq~qLlq~----------~k~~~~l~~eLq~l~-~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 41 LVSRYAKQTSELQDQLLQK----------EKEQAKLQQELQALK-EFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666544443 233444444454444 3444555555555555555555554444
No 434
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=35.23 E-value=63 Score=23.40 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKK 196 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk 196 (300)
.+|++.++.|+.+++++..+|..=||
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666665555555443
No 435
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=35.13 E-value=3.4e+02 Score=24.46 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=4.8
Q ss_pred CcccCCC
Q 038916 245 SFNTNYG 251 (300)
Q Consensus 245 ~y~~~~g 251 (300)
-||+|+.
T Consensus 253 ~fGMN~~ 259 (292)
T PF01544_consen 253 IFGMNFK 259 (292)
T ss_dssp STTS-SS
T ss_pred HhhCCcc
Confidence 6888887
No 436
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.80 E-value=2.9e+02 Score=23.63 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEKRARAAA 237 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ekR~ra~~ 237 (300)
.-.+|..+.++.+-.++++..|..-+.......
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447888888888888888888877766666543
No 437
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.68 E-value=3.8e+02 Score=27.13 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 201 NYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 201 ~~eQ~qaMeknlisMarEvekLRael 226 (300)
..++++.+.++|..+..++..+..++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 438
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=34.67 E-value=1.8e+02 Score=21.26 Aligned_cols=23 Identities=22% Similarity=0.344 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038916 142 AMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL 164 (300)
.+..++......+..|...-+.|
T Consensus 45 ~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 45 ELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343333333
No 439
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=34.40 E-value=3e+02 Score=23.64 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhchhh
Q 038916 186 RARAAIEFDKKGYAE 200 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e 200 (300)
.++..++.|++....
T Consensus 108 ~a~~~i~~ek~~a~~ 122 (164)
T PRK14471 108 QAKASIESEKNAAMA 122 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666655444
No 440
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.36 E-value=74 Score=27.90 Aligned_cols=52 Identities=17% Similarity=0.480 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
...++.|+.+++.|+..+.+ .-|- .+=..++-+++.+..||.........++
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~-qDeF---AkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISA-QDEF---AKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-T-TTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCc-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544422 1122 2333445555555555555444444444
No 441
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.24 E-value=6.1e+02 Score=27.12 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=4.3
Q ss_pred HHHHhHHHHH
Q 038916 69 HLAAQHQDIQ 78 (300)
Q Consensus 69 ~la~Q~~Ei~ 78 (300)
.|.-|-.||.
T Consensus 189 ~L~fq~~Ele 198 (557)
T COG0497 189 LLQFQLEELE 198 (557)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 442
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.85 E-value=2.9e+02 Score=23.36 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.3
Q ss_pred HHHHHHHhHHhhh
Q 038916 126 MYDKSVQLEVDLR 138 (300)
Q Consensus 126 l~~k~~K~EaElr 138 (300)
+.++..++++|+.
T Consensus 57 l~~~~~~l~~d~~ 69 (151)
T PF11559_consen 57 LSDKLRRLRSDIE 69 (151)
T ss_pred HHHHHHHHHhHHH
Confidence 3344444444433
No 443
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=33.80 E-value=2.1e+02 Score=27.67 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHH
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r 186 (300)
|..|-..|++-...|.+--+|| .+-+..+++||..+.|.-++
T Consensus 109 L~~en~~Lr~~n~~L~~~n~el--~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 109 LQNENDSLRAINESLLAKNHEL--DSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHhhHHHHHH
Confidence 3333444444444444444444 12233444444444443333
No 444
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.79 E-value=1e+02 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~ 227 (300)
-.++.-|..|..||.+++++++
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667778888888888885
No 445
>PLN02718 Probable galacturonosyltransferase
Probab=33.75 E-value=2.9e+02 Score=29.71 Aligned_cols=88 Identities=26% Similarity=0.292 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHH------
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLI------ 213 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknli------ 213 (300)
++-||+.|-.+++=+ .+...+.-. .+..||..-=||++|.-....-+...-..-.+-+++|+..|.
T Consensus 167 v~~~~dql~~ak~y~-~~a~~~~~~-------~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~ 238 (603)
T PLN02718 167 VKEIRDKIIQAKAYL-NLAPPGSNS-------QLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVF 238 (603)
T ss_pred HHHHHHHHHHHHHHH-HHhccCCcH-------HHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhcc
Confidence 556777777766655 444444333 455555555578888887777777766777788889988887
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHH
Q 038916 214 -SMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 214 -sMarEvekLRael~n~ekR~ra 235 (300)
...-=+-|||+-+...|.++++
T Consensus 239 ~d~~~~~~klr~~~~~~e~~~~~ 261 (603)
T PLN02718 239 PNCPAIATKLRAMTYNTEEQVRA 261 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667999998887776555
No 446
>PF15463 ECM11: Extracellular mutant protein 11
Probab=33.67 E-value=1.5e+02 Score=25.27 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh-hhHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYE-HGQVMEKKLISMA 216 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e-Q~qaMeknlisMa 216 (300)
..+...|...|+++-...+.||.|-+.+++.|+ |...+...|..|+
T Consensus 86 ~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk 132 (139)
T PF15463_consen 86 SELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMK 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666777777777766443 3334444444443
No 447
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=33.43 E-value=8.6e+02 Score=28.64 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+.-.++++..+..++..+.+.++...+.-.+..+.++.|...++.+..|.+.+..+++..+.|...
T Consensus 929 v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 994 (1395)
T KOG3595|consen 929 VEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLR 994 (1395)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888899999999999999999999999877665433
No 448
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.40 E-value=1.2e+02 Score=29.08 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHh
Q 038916 74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVH 110 (300)
Q Consensus 74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~ 110 (300)
..-|..|....+.|..+...|+.+++.++..|+.++.
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777788888888888888888888888874
No 449
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.28 E-value=3.5e+02 Score=24.02 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhH----HHHHHH
Q 038916 72 AQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVE----AMRSEL 147 (300)
Q Consensus 72 ~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e----~lr~El 147 (300)
....|+..|-.||.+|-..--.-++.--.+..++-.+- -.-+-..+++..++.+++++.+.+. ++.+.+
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E-------d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELE-------DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHhH--hhcccHHHHHHHHHHHHHH
Q 038916 148 LKVQADIKELTAVRQELT--DLQQVPALKAEIENVKQEL 184 (300)
Q Consensus 148 ~ql~aE~q~L~a~RqEL~--d~qQv~al~aEl~~lRqEl 184 (300)
..+...-..|-.--..|. +.+-+..++.-++..|-|+
T Consensus 120 ~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 120 SRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 450
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.15 E-value=6.3e+02 Score=26.99 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
+..+.+-.+.+..||......-+-. ...=++++.+..++...++.+-+.|...+
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~~~----~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEESL----EALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554433222111 11122344444455555555555555443
No 451
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=33.01 E-value=4.9e+02 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhccc----hhhhHHHHHHHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQR----LAATHVALKQELEVAQYELQ 106 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqR----La~~h~aLrqeLaa~~~Elq 106 (300)
.+|.++|+.-..||..+-.+||. ...+.-++++..+..+..|.
T Consensus 2 ~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lK 48 (305)
T PF14915_consen 2 HMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLK 48 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36888888888888888888875 56666777777776666663
No 452
>PF14182 YgaB: YgaB-like protein
Probab=32.82 E-value=2.6e+02 Score=22.43 Aligned_cols=9 Identities=22% Similarity=0.756 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038916 176 EIENVKQEL 184 (300)
Q Consensus 176 El~~lRqEl 184 (300)
++.++++|+
T Consensus 41 ~l~~i~~EI 49 (79)
T PF14182_consen 41 ELHSIQEEI 49 (79)
T ss_pred hHHHHHHHH
Confidence 333333333
No 453
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=32.80 E-value=1.8e+02 Score=26.41 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=21.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 038916 113 DSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKE 156 (300)
Q Consensus 113 ~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~ 156 (300)
+..+.|=|-++..+-.++.++|.=......+|.+...++.|+..
T Consensus 119 d~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 119 DQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555555555555555555554443
No 454
>PRK14144 heat shock protein GrpE; Provisional
Probab=32.75 E-value=44 Score=30.83 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ek 231 (300)
+++++..+.-.+.++.|+++|.+|
T Consensus 57 le~e~~elkdk~lR~~AefeN~RK 80 (199)
T PRK14144 57 AEQKAHENWEKSVRALAELENVRR 80 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444
No 455
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.68 E-value=4.2e+02 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 038916 207 VMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ 229 (300)
.|+.....-..|..+|+.++..+
T Consensus 93 ~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 93 RLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555444
No 456
>PRK14148 heat shock protein GrpE; Provisional
Probab=32.45 E-value=1.2e+02 Score=27.96 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH 204 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ 204 (300)
.+..+.++++.++..+.|+.+-|+.=+|+...+.++
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~ 83 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSN 83 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677776766666666666555554444
No 457
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.36 E-value=1e+02 Score=30.24 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHhhhhhHHHHHH
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSE 146 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~E 146 (300)
+|.+++-.||.||+-++-+--|
T Consensus 266 ~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 266 ELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443333
No 458
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.11 E-value=3.6e+02 Score=27.23 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+..++++.+.++|..+..++..+..++
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666665555555
No 459
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=32.09 E-value=3.5e+02 Score=23.68 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhhhhhhHHH-HHHHHHHHHHhHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 102 QYELQRMVHYADSFRMDKDVQ-MREMYDKSVQLEVDL--RGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 102 ~~Elq~L~~~i~~~r~e~Elq-~r~l~~k~~K~EaEl--ra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
+-||..+..-...-|.++|++ ...+...+.-+...+ +-...+.+.|.++...++.+......|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l 85 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERLQAANSMCSRL 85 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333344455555 222222222222222 323444555555555555555555555
No 460
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=31.99 E-value=73 Score=21.12 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 038916 170 VPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e 192 (300)
|..|.++|+.+|+|+.--+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887777775
No 461
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.98 E-value=1.3e+02 Score=32.12 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 038916 216 ARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 216 arEvekLRael~n~ekR~ra~ 236 (300)
+++.++.--+|+-+|||-|-.
T Consensus 511 kkl~~~~qr~l~etKkKQWC~ 531 (588)
T KOG3612|consen 511 KKLAEEHQRALAETKKKQWCY 531 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566666676653
No 462
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.45 E-value=4.5e+02 Score=24.76 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038916 65 IIEEHLA 71 (300)
Q Consensus 65 ~lEe~la 71 (300)
+++.+|.
T Consensus 105 iF~~eI~ 111 (301)
T PF14362_consen 105 IFEKEID 111 (301)
T ss_pred HHHHHHH
Confidence 3344333
No 463
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.38 E-value=1.5e+02 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=11.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~ 189 (300)
+||..|..||..||..+.....
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~ 82 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQY 82 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555544333
No 464
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=31.34 E-value=8.3e+02 Score=27.82 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRS 145 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~ 145 (300)
+.++.+--.-...+|.-+-.-+-..-+.|=+.+.++--+|--+. .....+.+.|.+.. +..-.++.+..+-.
T Consensus 625 ~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~-~~~r~~~~~e~~~E-------e~r~~le~~~~~t~ 696 (984)
T COG4717 625 LMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLF-CVQRLRVAAELQKE-------EARLALEGNIERTK 696 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHH-HHHHHHHHHHHhhH-------HHHHHHhhhHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHhH-------------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh---
Q 038916 146 ELL-KVQADIKELTAVRQELT-------------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY--- 202 (300)
Q Consensus 146 El~-ql~aE~q~L~a~RqEL~-------------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~--- 202 (300)
|+. .|++|++.. +.|++ +.||.......+..+-+-|.+. ..-.||+.....+-
T Consensus 697 El~~~L~ae~~~~---~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v-~~~~~eL~~~~~~~~~~ 772 (984)
T COG4717 697 ELNDELRAELELH---RKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGV-AAEAYELSASLDQRELK 772 (984)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHhhhhhhhhhhh
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 203 -EHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 203 -eQ~qaMeknlisMarEvekLRael~ 227 (300)
++..-+|+-++..-+|++.+++.++
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~ 798 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVA 798 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.20 E-value=3.6e+02 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916 186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARE 218 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE 218 (300)
.++..++.|++.... .+.+++++++-+
T Consensus 119 ~a~~~i~~e~~~a~~------~l~~qi~~la~~ 145 (174)
T PRK07352 119 TAAADLSAEQERVIA------QLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 666777777655555 344444444444
No 466
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.96 E-value=1.4e+02 Score=27.72 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 038916 178 ENVKQELQRARAAIEF 193 (300)
Q Consensus 178 ~~lRqEl~r~R~a~e~ 193 (300)
+.+++|..+.|..++.
T Consensus 96 ~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 96 EQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3444444444444443
No 467
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=30.86 E-value=4.6e+02 Score=24.66 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=49.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHH--HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh----------hcccHHHHHHHH
Q 038916 111 YADSFRMDKDVQMREMYDKSV--QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTD----------LQQVPALKAEIE 178 (300)
Q Consensus 111 ~i~~~r~e~Elq~r~l~~k~~--K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d----------~qQv~al~aEl~ 178 (300)
-|+..+.+.|..+-.-+-.-+ -+|.|+..+-..|..|.+.+-| +.+.|.-+.. ..+++.++.|++
T Consensus 92 ~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd---~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e 168 (244)
T cd07595 92 TLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLD---MDSARSRYNAAHKSSGGQGAAAKVDALKDEYE 168 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHhccccccccccccccchHHHHHH
Confidence 345556666665443333322 3566777666666666666663 3444444421 123456666666
Q ss_pred HHHHHHHHHHHHhhhhhhchhhh-hhhhHHH
Q 038916 179 NVKQELQRARAAIEFDKKGYAEN-YEHGQVM 208 (300)
Q Consensus 179 ~lRqEl~r~R~a~e~Ekk~~~e~-~eQ~qaM 208 (300)
.+.-++..++-.+..+-.-..++ .+++.-|
T Consensus 169 ~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l 199 (244)
T cd07595 169 EAELKLEQCRDALATDMYEFLAKEAEIASYL 199 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 66666666665555554444444 4444433
No 468
>PRK14164 heat shock protein GrpE; Provisional
Probab=30.58 E-value=83 Score=29.40 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 166 DLQQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
+..++..+.++|..++..|.|+.+-|+.=+
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~R 104 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANYR 104 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336788888888888888877665555444
No 469
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=30.49 E-value=2.9e+02 Score=22.24 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=8.1
Q ss_pred HhHHhhhhhHHHHHHHHHHHH
Q 038916 132 QLEVDLRGVEAMRSELLKVQA 152 (300)
Q Consensus 132 K~EaElra~e~lr~El~ql~a 152 (300)
++..++...+..+.++.++..
T Consensus 34 ~I~~~~~~a~~~~~ea~~~~~ 54 (132)
T PF00430_consen 34 KIQSELEEAEELKEEAEQLLA 54 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 333333333334443333333
No 470
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=30.43 E-value=8.1e+02 Score=27.38 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHH-------HHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEK-------KLISMARELEKLRAEI 226 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMek-------nlisMarEvekLRael 226 (300)
+++...-.+.-||+|--+.++.++-|+.+..++-++.-+..- .+..+-.|+.+++...
T Consensus 698 ~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 698 SLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666778888888889999998888887766555444 4455555555555543
No 471
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.32 E-value=5.7e+02 Score=26.05 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 154 IKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 154 ~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
...|+..=-|++|++ ..||.+|+|||..--.-++|- .+|..+.+..+|++..-=|.||-
T Consensus 260 ~erLEeqlNd~~elH-----q~Ei~~LKqeLa~~EEK~~Yq------s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 260 YERLEEQLNDLTELH-----QNEIYNLKQELASMEEKMAYQ------SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 334555555554444 468888888886654444442 23444455555555555555554
No 472
>PRK00106 hypothetical protein; Provisional
Probab=30.30 E-value=6.8e+02 Score=26.50 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.7
Q ss_pred CCCCCCCCCCcchh
Q 038916 282 GPGPGSWGAYDMQR 295 (300)
Q Consensus 282 ~~g~~~~g~yd~~~ 295 (300)
-|++....+||+=|
T Consensus 264 tp~~v~lS~fdpvR 277 (535)
T PRK00106 264 TPEVVVLSGFDPIR 277 (535)
T ss_pred CCCeEEEeCCChHH
Confidence 34555566666544
No 473
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.29 E-value=6.3e+02 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQR 186 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r 186 (300)
.+|+.|-|+|-+||.-
T Consensus 352 aaLrkerd~L~keLee 367 (442)
T PF06637_consen 352 AALRKERDSLAKELEE 367 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666665543
No 474
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.25 E-value=3.9e+02 Score=26.60 Aligned_cols=27 Identities=33% Similarity=0.387 Sum_probs=16.4
Q ss_pred HHHHhhhhhccchhhhHHHHHHHHHHH
Q 038916 75 QDIQGLLADNQRLAATHVALKQELEVA 101 (300)
Q Consensus 75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~ 101 (300)
.|...|-.|-+.|-++|...++.+...
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666667777776666665443
No 475
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.23 E-value=94 Score=28.79 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=11.9
Q ss_pred CCCCCCCCCC-CCCCCCCCcc
Q 038916 274 GAETYPHYGP-GPGSWGAYDM 293 (300)
Q Consensus 274 ~~~~~~~y~~-g~~~~g~yd~ 293 (300)
++...+.||. |-+|.|+||.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~ 206 (208)
T PRK14155 186 GANPYASAAADGDGSGGSFDT 206 (208)
T ss_pred cCCCCCCccccCCCCCCcccC
Confidence 3344566654 3377788874
No 476
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.22 E-value=1.8e+02 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=15.5
Q ss_pred hhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 192 EFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 192 e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
..||..+.++.-==-+.+...---+++++..=-+++
T Consensus 279 al~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~a 314 (365)
T KOG2391|consen 279 ALEKAENLEALDIDEAIECTAPLYKQILECYALDLA 314 (365)
T ss_pred HHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhH
Confidence 344544444333223333333344555555444444
No 477
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.09 E-value=2.7e+02 Score=23.14 Aligned_cols=8 Identities=13% Similarity=0.467 Sum_probs=4.6
Q ss_pred CCCCCCCC
Q 038916 261 PYPVSYSM 268 (300)
Q Consensus 261 ~y~d~Y~~ 268 (300)
-|.+||-+
T Consensus 81 LY~EGFHI 88 (107)
T PF06156_consen 81 LYQEGFHI 88 (107)
T ss_pred HHhcCeee
Confidence 46666653
No 478
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.09 E-value=3.8e+02 Score=23.44 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
+.-++++..+..++..+..-+..|. |+.-+...+.+|+..-|+.+..+..++. .+.+....++..|..
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~---~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES---LNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHH
Confidence 3445555555555555555555443 2233333333333333333333333332 223333444444444
No 479
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.08 E-value=5.1e+02 Score=24.95 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 038916 214 SMARELEKLRAEI 226 (300)
Q Consensus 214 sMarEvekLRael 226 (300)
.|..||.+||+|+
T Consensus 204 el~e~I~~L~~eV 216 (258)
T PF15397_consen 204 ELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555554
No 480
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=30.07 E-value=2.9e+02 Score=22.36 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhhhhhhchhhhhhhhHHHHH--HHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQR--ARAAIEFDKKGYAENYEHGQVMEK--KLISMARELEKLRAE 225 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r--~R~a~e~Ekk~~~e~~eQ~qaMek--nlisMarEvekLRae 225 (300)
.+|+.||..||.-+-+ -.+-|.-|...-.+.+...+.+.. .-+.|..||..||..
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5556666666543332 233344555555566666555553 466777777777653
No 481
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.92 E-value=4e+02 Score=23.71 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 124 REMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 124 r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
..+..++.+|++++.+++. +++.=+.+|..++.+|
T Consensus 25 q~~~~~I~~L~~e~~~ld~------~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDE------QIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3344455555555554332 3444444555555555
No 482
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.78 E-value=6.9e+02 Score=26.40 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhHhh--cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHH
Q 038916 148 LKVQADIKELTAVRQELTDL--QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL 212 (300)
Q Consensus 148 ~ql~aE~q~L~a~RqEL~d~--qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknl 212 (300)
.+-+.||..|.-+|.||... .-+.-|+.|-+...||+.....-|..=+ .++++-.|-++..+
T Consensus 456 skKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e---kenl~ERqkLKs~l 519 (527)
T PF15066_consen 456 SKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE---KENLEERQKLKSRL 519 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHH
Confidence 34445555555566555411 1233455566666666665544443222 33444444444433
No 483
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=29.72 E-value=4.7e+02 Score=24.42 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh-HHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG-QVMEKKLISMARELEK 221 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~-qaMeknlisMarEvek 221 (300)
++..+.+.|+..+++++..+..+.. +.+.|+.. ..-+.++.++-+..|.
T Consensus 155 e~~K~~~Kl~K~~~~~~k~~~~Y~~----~v~~l~~~~~~w~~~~~~~c~~fq~ 204 (240)
T cd07672 155 QQEKLFAKLAQSKQNAEDADRLYMQ----NISVLDKIREDWQKEHVKACEFFEK 204 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655554433322 13333333 3345555555555543
No 484
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.71 E-value=2.9e+02 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038916 142 AMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL 164 (300)
.+.+|-.+++...+....--.|+
T Consensus 8 eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333
No 485
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.70 E-value=3.2e+02 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=9.3
Q ss_pred HHHHHhhhhhhchhh
Q 038916 186 RARAAIEFDKKGYAE 200 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e 200 (300)
.++..++.|++....
T Consensus 105 ~a~~~i~~e~~~a~~ 119 (140)
T PRK07353 105 KARREIEQQKQAALA 119 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667777655544
No 486
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.68 E-value=94 Score=28.30 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=5.3
Q ss_pred HHHHHHHHHhHHH
Q 038916 219 LEKLRAEIANSEK 231 (300)
Q Consensus 219 vekLRael~n~ek 231 (300)
+-++.|+++|.+|
T Consensus 55 ~lR~~AefeN~rK 67 (185)
T PRK14139 55 FLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 487
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.58 E-value=4.2e+02 Score=23.89 Aligned_cols=85 Identities=20% Similarity=0.372 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHhHh-hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh----hhhHHHHH
Q 038916 143 MRSELLKVQADIKELTA-------VRQELTD-LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY----EHGQVMEK 210 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a-------~RqEL~d-~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~----eQ~qaMek 210 (300)
|..=+.+|+.|-+.... +|..|.. ...-.+|..+|..+.+++.+++..++..-......- ..+.+=.+
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~ 141 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33346667776666666 6666642 233467777777888888877777765322211111 11112233
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038916 211 KLISMARELEKLRAEIA 227 (300)
Q Consensus 211 nlisMarEvekLRael~ 227 (300)
.|.++=+||..+|.-++
T Consensus 142 rll~LWr~v~~lRr~f~ 158 (182)
T PF15035_consen 142 RLLSLWREVVALRRQFA 158 (182)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666664
No 488
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=29.37 E-value=18 Score=37.40 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH---hhcc--cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh----hhhHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELT---DLQQ--VPALKAEIENVKQELQRARAAIEFDKKGYAENY----EHGQVMEK 210 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~---d~qQ--v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~----eQ~qaMek 210 (300)
.+.+..|+.+|+.-||.|.-.-.=|- |.-| |.+|..||+--|.|......++..|++...+.+ .|+..++.
T Consensus 430 ~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~ 509 (539)
T PF10243_consen 430 RESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQ 509 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34456677777777777665544442 2222 566666666666666666667777776555444 46777777
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 038916 211 KLISMARELEKLRAEIANS 229 (300)
Q Consensus 211 nlisMarEvekLRael~n~ 229 (300)
+|.-+.-.|--+||.|.+=
T Consensus 510 ~I~~~~~~i~~~ka~Il~N 528 (539)
T PF10243_consen 510 QIKDQQDKICAVKANILKN 528 (539)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777777888877533
No 489
>PF14282 FlxA: FlxA-like protein
Probab=29.25 E-value=2.3e+02 Score=23.16 Aligned_cols=59 Identities=14% Similarity=0.381 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH--hhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAA--IEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a--~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
.+|..|...|..|.++|...-.. ++-| ..-+|++.+...|..+-..|..|..+.....+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-----~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAE-----QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888877765442 1222 22477888888888888888888888765543
No 490
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.23 E-value=1.2e+02 Score=22.38 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred HhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 190 AIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 190 a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
.+.+........-.|+..+++.+..+..|.++|..++..
T Consensus 11 ~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 11 FGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.22 E-value=5.4e+02 Score=24.99 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHH
Q 038916 97 ELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAE 176 (300)
Q Consensus 97 eLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aE 176 (300)
+|..++=++.-|......+.-..+..-..-.-...|-+.+-. ++..+.|+..+..|+.+....-+|+ .++|.+.++.
T Consensus 160 DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~-l~~~~~ELe~~~EeL~~~Eke~~e~--~~~i~e~~~r 236 (269)
T PF05278_consen 160 DLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRK-LELKKEELEELEEELKQKEKEVKEI--KERITEMKGR 236 (269)
T ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038916 177 IENVKQELQRARAAIEF 193 (300)
Q Consensus 177 l~~lRqEl~r~R~a~e~ 193 (300)
|..+..|..+.-..+.+
T Consensus 237 l~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 237 LGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHH
No 492
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=29.21 E-value=1.1e+02 Score=32.04 Aligned_cols=72 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 148 LKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 148 ~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.++..++..-...|.|- ..-..|+.||..|+.+|...-...++.+.-..+ +.+...|..|-+|+++|-.+|+
T Consensus 349 ~~~d~~le~~~~~r~e~---~~ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~-----~~~~e~i~~kE~eLe~L~~elD 420 (492)
T PF06273_consen 349 RKIDLELEHRAVDRPET---EEEKFLKEEINALKERLEEEEASSEKSKGSGEE-----ESLREEISQKEKELEKLTRELD 420 (492)
T ss_pred HHHHHHhhccccccccc---ccchhhhhhHHHHHHHHHhhhhhhhhccccccc-----hhHHHHHHHHHHHHHHHHHHhh
No 493
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.15 E-value=4.5e+02 Score=24.05 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQ 169 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQ 169 (300)
+..+.+.-|.-+.-=+.++..-+.|+.+=..--.-.-......||+.+. .+..++..++.+++.+...|+-- |
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~---~le~~l~~~k~~ie~vN~~RK~~----Q 170 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLK---RLEKELAKLKKEIEEVNRERKRR----Q 170 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek 231 (300)
+. ...+|..|.+ ...+.+...-.+|.....|..||..||..-...+.
T Consensus 171 ~~-~~~~L~~Le~--------------~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 171 EE-AGEELRYLEQ--------------RWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HH-hHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 494
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.07 E-value=6.2e+02 Score=29.38 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCCCCCCCchhhHHhhhhccCCCCCCCCCCchHHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 30 GRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 30 grg~~p~pPhp~~~~~~r~~~~~~~~~~l~p~p~~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
+|.+.|.+|- ||+| +.=+.+.+. -|-..-.-|++|++..++|+
T Consensus 563 ~r~~~~~~~~-------------------~~~p---vD~~~Aq~E-----------lL~kQ~i~lk~eme~~~~e~---- 605 (1221)
T KOG0245|consen 563 ERERTPPAPT-------------------PPEP---VDWKFAQRE-----------LLEKQGIDLKAEMEKRLQEA---- 605 (1221)
T ss_pred hcccCCCCCC-------------------CCCC---ccHHHHHHH-----------HHHHhhhhHHHHHHHHHHHH----
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH----HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHH
Q 038916 110 HYADSFRMDKDVQMREMYDKSV----QLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQEL 184 (300)
Q Consensus 110 ~~i~~~r~e~Elq~r~l~~k~~----K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl 184 (300)
....+-|++..-..+..+.. ++|.+++ |+..+.......+.|+. .+++...-.......++
T Consensus 606 --e~qy~~er~~a~~~~eqq~~~~~s~lE~~~k----------q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~-- 671 (1221)
T KOG0245|consen 606 --ENQYRQEREEADLLLEQQRLDYESKLESEQK----------QLETELREISEEEEEVQWTVKECELALWAKRKAKR-- 671 (1221)
T ss_pred --HHHHHHHHHHhhhhHHHhhHHHHHHHHHHHH----------HHhhhcccccchhhhhhhhhhhhhhhHHHHHHHHH--
Q ss_pred HHHHHHhhhhhhchhhhhhhhHHHHHHHH
Q 038916 185 QRARAAIEFDKKGYAENYEHGQVMEKKLI 213 (300)
Q Consensus 185 ~r~R~a~e~Ekk~~~e~~eQ~qaMeknli 213 (300)
+.-+-+--.+-.+...+.-..+|+-.+.
T Consensus 672 -~~~~s~~~~~~~~~~~l~~~~a~~~e~~ 699 (1221)
T KOG0245|consen 672 -HQEQSLRDLLEGNAIFLAAAAALEVELK 699 (1221)
T ss_pred -HHHHHHHhhhhhhhHHHHHHHHHHHHhc
No 495
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.06 E-value=3e+02 Score=22.00 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHH
Q 038916 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r 186 (300)
|--...|-.++-+||..+...-..-.....+..+++.|.+-|..|. ++-+..+=-..|+....|+.+
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 496
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.06 E-value=3.6e+02 Score=26.25 Aligned_cols=81 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcc-cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 149 KVQADIKELTAVRQELTDLQQ-VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 149 ql~aE~q~L~a~RqEL~d~qQ-v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
++..=+.+|....+++.+++. +...+.+|+...+|....-..+..++......-..+...++.+...+.|+.+...+..
T Consensus 2 rl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~ 81 (344)
T PF12777_consen 2 RLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAE 81 (344)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hH
Q 038916 228 NS 229 (300)
Q Consensus 228 n~ 229 (300)
..
T Consensus 82 ~~ 83 (344)
T PF12777_consen 82 EE 83 (344)
T ss_dssp HH
T ss_pred HH
No 497
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.97 E-value=1.8e+02 Score=26.87 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 121 lq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
+...++.+...-+|+.++..+..++.+..+-....++..+-.== +++...+.||+.++.++......++|
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie---~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIE---RELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhce
No 498
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.96 E-value=1e+02 Score=26.95 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 156 ELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 156 ~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
.|++.+.+| .|||..|+.|+..++.|+.-.+.-|+
T Consensus 78 eLE~~k~~L--~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 78 ELEKEKAEL--QQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.88 E-value=4.3e+02 Score=23.74 Aligned_cols=120 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhH-hhcccHHHHHHHHH
Q 038916 102 QYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELT-AVRQELT-DLQQVPALKAEIEN 179 (300)
Q Consensus 102 ~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~-a~RqEL~-d~qQv~al~aEl~~ 179 (300)
.+|+-+.. +..+++-.|.==+-=++-.-|..+.+--++.....|.+++-++..+. .+|+|++ --+.|....-||..
T Consensus 25 ~e~~s~sa--ls~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 25 DEEMSRSA--LSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred HHHhhHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 180 VKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 180 lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
+.+=.+..-.-+..=+.++.+.-.---.+-..|..+..|-|++|
T Consensus 103 l~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=28.82 E-value=2.1e+02 Score=26.17 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 175 AEIENVKQELQRARAAIEFDKKGYAENYE--HGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 175 aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e--Q~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+++..++-|+...|..++-+-=....+|- .+.+|.+++..+..+|.+|+.++.+.++|
T Consensus 75 ~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~ 134 (181)
T PF04645_consen 75 AEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKK 134 (181)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Done!