Query 038916
Match_columns 300
No_of_seqs 112 out of 123
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 96.5 0.12 4.2E-06 61.5 20.5 159 64-232 1906-2071(3245)
2 1c1g_A Tropomyosin; contractIl 96.3 0.43 1.5E-05 40.2 21.8 41 67-107 82-122 (284)
3 2dfs_A Myosin-5A; myosin-V, in 96.1 0.096 3.3E-06 56.7 15.4 14 85-98 924-937 (1080)
4 3na7_A HP0958; flagellar bioge 95.4 1.5 5.1E-05 39.5 18.8 126 66-193 7-143 (256)
5 3ghg_A Fibrinogen alpha chain; 95.3 0.18 6.3E-06 50.8 12.7 81 145-227 74-155 (562)
6 3na7_A HP0958; flagellar bioge 95.3 1.2 4E-05 40.1 17.1 36 76-111 12-47 (256)
7 1i84_S Smooth muscle myosin he 94.9 0.057 1.9E-06 58.6 8.5 8 41-48 781-788 (1184)
8 1i84_S Smooth muscle myosin he 94.8 0.054 1.9E-06 58.8 8.1 13 93-105 882-894 (1184)
9 3oja_B Anopheles plasmodium-re 94.8 0.2 6.8E-06 49.1 11.4 29 204-232 552-580 (597)
10 3ol1_A Vimentin; structural ge 94.8 0.75 2.6E-05 37.4 13.0 95 64-195 16-110 (119)
11 2dfs_A Myosin-5A; myosin-V, in 94.5 0.89 3E-05 49.3 16.4 20 172-191 1020-1039(1080)
12 3lay_A Zinc resistance-associa 94.2 0.27 9.4E-06 42.8 9.8 50 173-229 90-139 (175)
13 3oja_B Anopheles plasmodium-re 93.7 0.62 2.1E-05 45.6 12.2 52 182-233 523-574 (597)
14 3o0z_A RHO-associated protein 93.3 2.8 9.5E-05 36.5 14.3 54 171-224 58-111 (168)
15 3ghg_A Fibrinogen alpha chain; 92.3 1.5 5E-05 44.4 12.6 73 117-192 81-155 (562)
16 3vkg_A Dynein heavy chain, cyt 90.6 5.7 0.00019 47.9 17.0 27 129-155 1995-2024(3245)
17 3swk_A Vimentin; cytoskeleton, 90.3 2 6.7E-05 33.2 9.0 50 130-181 34-83 (86)
18 1x79_B RAB GTPase binding effe 89.6 2.3 7.7E-05 34.8 9.2 84 141-227 9-101 (112)
19 1deq_A Fibrinogen (alpha chain 89.1 3.7 0.00013 39.9 11.7 26 168-193 134-159 (390)
20 3lay_A Zinc resistance-associa 88.8 1.5 5E-05 38.2 8.0 52 141-194 88-139 (175)
21 2v71_A Nuclear distribution pr 87.8 12 0.00041 33.0 13.3 39 66-104 47-85 (189)
22 2v71_A Nuclear distribution pr 87.6 7.5 0.00026 34.3 11.9 53 169-224 57-109 (189)
23 3i00_A HIP-I, huntingtin-inter 86.9 1.8 6E-05 35.6 7.0 42 101-142 20-61 (120)
24 3tnu_B Keratin, type II cytosk 85.9 8.8 0.0003 31.1 10.7 12 98-109 31-42 (129)
25 1wt6_A Myotonin-protein kinase 85.8 2.9 9.9E-05 32.4 7.2 28 132-159 18-45 (81)
26 3q8t_A Beclin-1; autophagy, AT 85.3 12 0.0004 29.3 12.5 84 132-223 8-94 (96)
27 3tnu_A Keratin, type I cytoske 84.6 8.5 0.00029 31.4 10.1 18 184-201 110-127 (131)
28 3i00_A HIP-I, huntingtin-inter 84.2 3.8 0.00013 33.6 7.7 11 142-152 19-29 (120)
29 2ocy_A RAB guanine nucleotide 82.6 22 0.00074 30.4 12.1 85 126-226 11-95 (154)
30 3hnw_A Uncharacterized protein 82.2 20 0.0007 29.7 11.9 80 121-209 39-123 (138)
31 2jee_A YIIU; FTSZ, septum, coi 81.7 11 0.00038 29.1 9.0 44 193-236 31-74 (81)
32 1s94_A S-syntaxin; three helix 81.3 14 0.00049 31.0 10.6 105 121-227 36-150 (180)
33 3onj_A T-snare VTI1; helix, HA 80.4 18 0.00063 28.0 11.8 86 92-188 4-93 (97)
34 1ez3_A Syntaxin-1A; three heli 80.1 18 0.00062 28.3 10.2 25 202-226 94-118 (127)
35 3tnu_A Keratin, type I cytoske 80.1 22 0.00077 28.8 11.0 20 146-165 92-111 (131)
36 3tnu_B Keratin, type II cytosk 79.8 21 0.00072 28.9 10.7 15 95-109 35-49 (129)
37 3o0z_A RHO-associated protein 79.5 30 0.001 30.0 17.0 105 118-228 45-154 (168)
38 2e7s_A RAB guanine nucleotide 74.3 13 0.00044 31.2 8.0 72 142-226 12-83 (135)
39 3m91_A Proteasome-associated A 74.2 6.6 0.00023 27.8 5.3 43 67-109 8-50 (51)
40 1m1j_C Fibrinogen gamma chain; 74.2 49 0.0017 32.2 13.2 93 133-232 36-134 (409)
41 2qyw_A Vesicle transport throu 73.0 32 0.0011 26.9 9.8 85 90-184 16-101 (102)
42 1m1j_A Fibrinogen alpha subuni 72.3 23 0.00079 35.3 10.4 43 186-228 115-157 (491)
43 1vcs_A Vesicle transport throu 72.2 14 0.00048 28.9 7.4 86 94-190 10-96 (102)
44 3mq9_A Bone marrow stromal ant 71.9 35 0.0012 32.4 11.5 33 194-227 435-467 (471)
45 2v0o_A FCHO2, FCH domain only 71.8 49 0.0017 28.7 15.9 45 168-212 163-211 (276)
46 2ke4_A CDC42-interacting prote 70.1 13 0.00044 29.4 6.7 60 169-228 16-80 (98)
47 1deq_A Fibrinogen (alpha chain 69.6 85 0.0029 30.5 14.6 26 133-158 129-154 (390)
48 3oja_A Leucine-rich immune mol 68.6 81 0.0028 29.9 14.6 35 171-205 413-447 (487)
49 2v4h_A NF-kappa-B essential mo 68.3 47 0.0016 27.0 10.1 22 168-189 62-83 (110)
50 3ol1_A Vimentin; structural ge 67.7 46 0.0016 26.7 11.4 16 208-223 88-103 (119)
51 2i1j_A Moesin; FERM, coiled-co 67.3 11 0.00038 37.9 7.2 39 89-129 297-335 (575)
52 1use_A VAsp, vasodilator-stimu 67.2 14 0.0005 25.5 5.6 9 177-185 32-40 (45)
53 1m1j_B Fibrinogen beta chain; 64.7 86 0.0029 31.1 12.8 25 203-227 168-192 (464)
54 1t3j_A Mitofusin 1; coiled coi 63.5 43 0.0015 26.5 8.5 20 86-105 33-52 (96)
55 4dzn_A Coiled-coil peptide CC- 63.2 10 0.00036 24.1 3.9 20 90-109 3-22 (33)
56 3iox_A AGI/II, PA; alpha helix 63.0 76 0.0026 31.8 12.1 56 171-226 44-99 (497)
57 3mov_A Lamin-B1; LMNB1, B-type 62.7 22 0.00076 27.8 6.7 13 129-141 20-32 (95)
58 1go4_E MAD1 (mitotic arrest de 61.4 32 0.0011 27.4 7.5 21 208-228 73-93 (100)
59 2w6b_A RHO guanine nucleotide 61.0 18 0.00062 26.1 5.3 32 169-200 11-42 (56)
60 1x79_B RAB GTPase binding effe 60.9 65 0.0022 26.1 11.4 90 90-181 14-104 (112)
61 1go4_E MAD1 (mitotic arrest de 60.6 26 0.0009 27.9 6.8 38 197-235 56-93 (100)
62 3trt_A Vimentin; cytoskeleton, 60.5 46 0.0016 24.2 8.0 25 157-181 51-76 (77)
63 2efk_A CDC42-interacting prote 59.2 92 0.0032 27.3 16.9 19 80-98 74-92 (301)
64 2fxo_A Myosin heavy chain, car 58.8 70 0.0024 25.8 14.9 18 176-193 66-83 (129)
65 2j69_A Bacterial dynamin-like 58.6 1.3E+02 0.0046 30.5 13.4 42 170-211 632-673 (695)
66 1fxk_A Prefoldin; archaeal pro 56.9 61 0.0021 24.5 12.0 24 142-165 19-42 (107)
67 4dk0_A Putative MACA; alpha-ha 56.6 68 0.0023 29.0 10.0 22 210-231 129-150 (369)
68 2q12_A DIP13 alpha, DCC-intera 56.4 1E+02 0.0035 26.9 12.8 26 206-231 220-245 (265)
69 2i1j_A Moesin; FERM, coiled-co 55.5 12 0.0004 37.7 4.9 23 211-233 434-456 (575)
70 2pih_A Protein YMCA; regulate 55.0 76 0.0026 26.2 9.2 55 123-188 6-60 (151)
71 2a3d_A Protein (de novo three- 54.8 39 0.0013 24.8 6.3 20 169-188 52-71 (73)
72 4emc_A Monopolin complex subun 54.4 34 0.0012 30.2 7.1 46 64-109 9-54 (190)
73 1use_A VAsp, vasodilator-stimu 54.1 17 0.00056 25.2 4.0 16 170-185 17-32 (45)
74 2lf0_A Uncharacterized protein 54.0 28 0.00096 28.7 6.0 55 143-200 8-68 (123)
75 1g6u_A Domain swapped dimer; d 53.3 33 0.0011 23.4 5.3 18 205-222 29-46 (48)
76 2eqb_B RAB guanine nucleotide 52.4 66 0.0023 25.5 7.8 17 140-156 7-23 (97)
77 3iox_A AGI/II, PA; alpha helix 52.2 1.9E+02 0.0067 28.9 13.4 51 91-141 4-54 (497)
78 3sjb_C Golgi to ER traffic pro 51.5 24 0.00081 27.9 5.1 28 167-194 55-82 (93)
79 3m9b_A Proteasome-associated A 51.4 15 0.00052 33.7 4.5 43 67-109 53-95 (251)
80 4gkw_A Spindle assembly abnorm 50.7 1.1E+02 0.0039 25.7 11.7 94 90-190 61-162 (167)
81 2d1l_A Metastasis suppressor p 50.0 1.5E+02 0.0051 26.9 15.9 59 168-228 174-232 (253)
82 1fio_A SSO1 protein; four heli 49.9 1.1E+02 0.0038 25.4 12.4 91 140-230 11-111 (196)
83 3a7p_A Autophagy protein 16; c 49.4 1.2E+02 0.0042 25.8 10.1 47 137-185 67-113 (152)
84 3swk_A Vimentin; cytoskeleton, 49.0 35 0.0012 26.0 5.6 17 204-220 43-59 (86)
85 2lw1_A ABC transporter ATP-bin 48.9 43 0.0015 25.3 6.1 18 169-186 57-74 (89)
86 3s9g_A Protein hexim1; cyclin 48.1 76 0.0026 25.4 7.5 21 168-188 65-85 (104)
87 1gk4_A Vimentin; intermediate 48.1 85 0.0029 23.5 9.9 19 120-138 25-43 (84)
88 3s84_A Apolipoprotein A-IV; fo 47.9 1.6E+02 0.0055 26.7 18.7 21 171-191 201-221 (273)
89 3iv1_A Tumor susceptibility ge 47.8 80 0.0027 24.1 7.4 25 141-165 14-38 (78)
90 4fla_A Regulation of nuclear P 47.8 1.2E+02 0.004 25.5 9.2 34 82-116 32-65 (152)
91 4dci_A Uncharacterized protein 47.7 78 0.0027 26.8 8.1 63 143-205 41-103 (150)
92 3m9b_A Proteasome-associated A 47.0 20 0.00068 33.0 4.6 24 204-227 69-92 (251)
93 2fxo_A Myosin heavy chain, car 46.7 1.1E+02 0.0038 24.5 13.5 19 146-164 21-39 (129)
94 3brv_B NF-kappa-B essential mo 45.7 79 0.0027 23.7 6.9 48 77-127 10-57 (70)
95 1deb_A APC protein, adenomatou 45.6 52 0.0018 23.4 5.5 18 168-185 10-27 (54)
96 1f5n_A Interferon-induced guan 45.4 2.5E+02 0.0087 28.2 15.3 17 209-225 566-582 (592)
97 2wt7_A Proto-oncogene protein 43.5 79 0.0027 22.4 6.5 19 146-164 24-42 (63)
98 2v4h_A NF-kappa-B essential mo 43.3 1.3E+02 0.0045 24.3 10.8 10 94-103 29-38 (110)
99 2xnx_M M protein, M1-BC1; cell 42.9 23 0.00077 30.1 4.0 23 143-165 85-107 (146)
100 1gk4_A Vimentin; intermediate 42.8 1E+02 0.0035 23.0 9.6 9 190-198 65-73 (84)
101 4b6x_A AVRRPS4, avirulence pro 42.8 88 0.003 24.2 6.9 17 177-193 38-54 (90)
102 4emc_A Monopolin complex subun 42.6 62 0.0021 28.6 6.9 24 168-191 34-57 (190)
103 1t2k_D Cyclic-AMP-dependent tr 42.3 86 0.0029 22.0 6.5 19 146-164 23-41 (61)
104 3u1c_A Tropomyosin alpha-1 cha 41.7 1.2E+02 0.0041 23.5 12.6 45 170-221 53-97 (101)
105 2xnx_M M protein, M1-BC1; cell 41.6 1.6E+02 0.0054 25.0 8.9 24 203-226 108-131 (146)
106 1y1u_A Signal transducer and a 41.4 75 0.0026 32.4 8.2 34 114-147 12-45 (585)
107 1t3j_A Mitofusin 1; coiled coi 41.0 73 0.0025 25.2 6.4 30 123-152 49-78 (96)
108 1qvr_A CLPB protein; coiled co 40.8 2.4E+02 0.0083 29.0 12.2 26 169-194 431-456 (854)
109 1ic2_A Tropomyosin alpha chain 40.7 1.1E+02 0.0037 22.7 8.3 28 204-231 42-69 (81)
110 1joc_A EEA1, early endosomal a 40.6 64 0.0022 25.9 6.3 39 123-164 6-44 (125)
111 2v66_B Nuclear distribution pr 40.4 91 0.0031 25.2 7.1 53 182-234 6-59 (111)
112 3mq9_A Bone marrow stromal ant 40.0 2.4E+02 0.0082 26.4 13.8 26 168-193 443-468 (471)
113 3a2a_A Voltage-gated hydrogen 39.9 38 0.0013 24.5 4.2 32 195-226 17-48 (58)
114 3u1c_A Tropomyosin alpha-1 cha 39.8 1.3E+02 0.0044 23.3 8.3 16 140-155 4-19 (101)
115 1ik9_A DNA repair protein XRCC 39.7 2E+02 0.0067 25.4 11.7 73 123-203 123-195 (213)
116 3abh_A Pacsin2, protein kinase 39.4 2E+02 0.007 25.4 10.7 21 170-190 159-179 (312)
117 2zuo_A MVP, major vault protei 38.8 3.9E+02 0.013 28.5 14.1 28 131-159 691-718 (861)
118 3fpp_A Macrolide-specific effl 38.5 2.1E+02 0.0072 25.4 10.6 21 211-231 129-149 (341)
119 2qyw_A Vesicle transport throu 38.4 1.4E+02 0.0047 23.2 10.0 52 173-226 50-101 (102)
120 1ci6_A Transcription factor AT 38.2 1.1E+02 0.0037 21.9 6.5 20 145-164 23-42 (63)
121 3mq7_A Bone marrow stromal ant 37.8 1.7E+02 0.0058 24.0 10.6 10 218-227 93-102 (121)
122 1wt6_A Myotonin-protein kinase 37.6 88 0.003 24.1 6.2 18 209-226 51-68 (81)
123 3r4h_A Coiled coil helix CC-TE 37.6 55 0.0019 20.9 4.2 8 157-164 4-11 (34)
124 3ghg_B Fibrinogen beta chain; 37.4 2.9E+02 0.01 27.3 11.5 33 200-232 160-192 (461)
125 3mov_A Lamin-B1; LMNB1, B-type 36.3 78 0.0027 24.6 5.9 19 120-138 36-54 (95)
126 1zww_A SH3-containing GRB2-lik 36.0 2.2E+02 0.0076 24.9 14.0 94 113-215 125-221 (256)
127 1l8d_A DNA double-strand break 35.2 1.5E+02 0.0051 22.6 11.0 24 204-227 79-102 (112)
128 3l4f_A RHO guanine nucleotide 35.2 78 0.0027 23.1 5.3 28 170-197 9-36 (61)
129 1jnm_A Proto-oncogene C-JUN; B 34.6 32 0.0011 24.4 3.1 19 146-164 23-41 (62)
130 3vmx_A Voltage-gated hydrogen 34.4 47 0.0016 23.3 3.8 30 197-226 12-41 (48)
131 2f1m_A Acriflavine resistance 34.4 1.5E+02 0.0052 25.5 8.3 25 207-231 102-126 (277)
132 3oja_A Leucine-rich immune mol 34.0 3E+02 0.01 25.9 17.2 26 207-232 453-478 (487)
133 1sjj_A Actinin; 3-helix bundle 34.0 3.9E+02 0.013 27.1 14.9 31 87-117 409-439 (863)
134 4ani_A Protein GRPE; chaperone 33.8 50 0.0017 29.4 5.0 34 169-202 67-100 (213)
135 3jsv_C NF-kappa-B essential mo 33.8 1.7E+02 0.0059 23.0 8.5 11 142-152 27-37 (94)
136 1cxz_B Protein (PKN); protein- 33.6 1.6E+02 0.0056 22.7 8.5 36 117-152 34-70 (86)
137 2w83_C C-JUN-amino-terminal ki 33.5 1.6E+02 0.0054 22.4 7.5 52 141-192 5-61 (77)
138 1m1j_A Fibrinogen alpha subuni 33.4 3.8E+02 0.013 26.8 14.3 72 119-193 84-157 (491)
139 3mq7_A Bone marrow stromal ant 33.2 2E+02 0.0069 23.6 11.5 19 209-227 91-109 (121)
140 3gee_A MNME, tRNA modification 32.8 74 0.0025 30.9 6.4 56 172-227 168-225 (476)
141 2no2_A HIP-I, huntingtin-inter 32.7 1.8E+02 0.0063 22.9 12.8 15 132-146 48-62 (107)
142 1ses_A Seryl-tRNA synthetase; 32.5 2.7E+02 0.0091 26.7 10.3 24 203-226 71-94 (421)
143 1e52_A Excinuclease ABC subuni 32.5 87 0.003 22.7 5.2 40 172-213 21-60 (63)
144 2q6q_A Spindle POLE BODY compo 31.5 1.2E+02 0.004 22.8 5.8 45 92-140 6-50 (74)
145 1m1j_B Fibrinogen beta chain; 31.4 3.9E+02 0.013 26.3 14.4 62 123-187 123-187 (464)
146 2a3d_A Protein (de novo three- 30.7 67 0.0023 23.5 4.3 16 93-108 6-21 (73)
147 1cii_A Colicin IA; bacteriocin 30.3 3.3E+02 0.011 27.4 10.5 75 140-215 358-437 (602)
148 3trt_A Vimentin; cytoskeleton, 30.0 1.6E+02 0.0053 21.3 7.0 27 204-230 50-76 (77)
149 4dk0_A Putative MACA; alpha-ha 29.9 2.5E+02 0.0085 25.2 9.2 28 204-231 116-143 (369)
150 3ra3_A P1C; coiled coil domain 29.5 14 0.00047 22.7 0.4 14 92-105 10-23 (28)
151 3viq_A SWI5-dependent recombin 29.4 49 0.0017 27.0 3.8 46 169-217 8-53 (122)
152 3q8t_A Beclin-1; autophagy, AT 29.0 2E+02 0.0068 22.2 11.8 57 172-228 36-92 (96)
153 2zvf_A Alanyl-tRNA synthetase; 29.0 1.4E+02 0.0049 24.2 6.8 30 200-229 29-58 (171)
154 3nmd_A CGMP dependent protein 29.0 1.6E+02 0.0054 22.1 6.2 25 204-228 41-65 (72)
155 1uii_A Geminin; human, DNA rep 28.5 1.3E+02 0.0044 23.2 5.8 39 188-226 38-76 (83)
156 1quu_A Human skeletal muscle a 28.3 2.8E+02 0.0094 23.6 15.1 122 87-224 53-183 (250)
157 3pe0_A Plectin; cytoskeleton, 28.0 3.3E+02 0.011 24.4 10.9 102 91-192 50-174 (283)
158 2w6b_A RHO guanine nucleotide 27.8 1.6E+02 0.0056 21.0 5.8 35 85-124 6-40 (56)
159 4g2k_A General control protein 27.8 2.6E+02 0.0088 23.1 10.9 94 120-221 20-125 (125)
160 3ra3_B P2F; coiled coil domain 27.6 23 0.00079 21.7 1.2 21 86-106 4-24 (28)
161 3oa7_A Head morphogenesis prot 27.4 1E+02 0.0035 27.4 5.8 40 147-188 32-71 (206)
162 1wle_A Seryl-tRNA synthetase; 27.2 4.6E+02 0.016 25.8 11.9 97 112-222 43-149 (501)
163 2avr_X Adhesion A; antiparalle 27.0 2.6E+02 0.0088 22.8 12.1 95 128-231 9-103 (119)
164 2zuo_A MVP, major vault protei 26.9 6.1E+02 0.021 27.1 18.3 23 87-109 671-694 (861)
165 3qne_A Seryl-tRNA synthetase, 26.6 4.8E+02 0.016 25.8 11.2 74 125-222 30-104 (485)
166 3lss_A Seryl-tRNA synthetase; 26.6 2.5E+02 0.0085 27.8 9.0 22 205-226 113-134 (484)
167 2zqm_A Prefoldin beta subunit 26.1 2.1E+02 0.0073 21.6 12.9 26 140-165 22-47 (117)
168 2dq0_A Seryl-tRNA synthetase; 25.8 3.4E+02 0.012 26.2 9.8 27 200-226 73-99 (455)
169 3ni0_A Bone marrow stromal ant 25.6 2.5E+02 0.0086 22.2 8.0 64 160-223 23-87 (99)
170 3vp9_A General transcriptional 25.4 76 0.0026 24.9 4.1 10 218-227 76-85 (92)
171 3vlc_E Golgi to ER traffic pro 25.3 26 0.0009 27.7 1.4 25 168-192 63-87 (94)
172 2jee_A YIIU; FTSZ, septum, coi 25.3 2.3E+02 0.0078 21.6 9.6 40 122-164 14-53 (81)
173 3ter_A Mammalian stromal inter 25.1 1.2E+02 0.0041 25.4 5.5 32 189-223 41-72 (136)
174 3s9g_A Protein hexim1; cyclin 24.9 2.7E+02 0.0091 22.2 7.6 46 173-225 42-87 (104)
175 2lf0_A Uncharacterized protein 24.6 1.4E+02 0.0046 24.7 5.6 23 123-145 38-60 (123)
176 2wt7_A Proto-oncogene protein 24.6 1.2E+02 0.0039 21.6 4.7 24 205-228 32-55 (63)
177 1f5n_A Interferon-induced guan 24.6 5.5E+02 0.019 25.8 15.0 27 64-90 459-485 (592)
178 3mtu_A Tropomyosin alpha-1 cha 24.2 1.2E+02 0.004 22.5 4.8 27 205-231 4-30 (75)
179 2oeq_A Protein of unknown func 24.1 2.6E+02 0.0089 21.9 7.3 53 125-188 7-59 (122)
180 4aj5_K Spindle and kinetochore 23.8 3E+02 0.01 22.6 11.2 49 172-221 47-96 (123)
181 1qvr_A CLPB protein; coiled co 23.8 5.4E+02 0.018 26.4 11.4 48 141-188 433-481 (854)
182 2f1m_A Acriflavine resistance 23.7 1.9E+02 0.0066 24.8 7.0 25 206-230 108-132 (277)
183 1vf7_A Multidrug resistance pr 23.6 1.4E+02 0.0049 27.3 6.4 20 212-231 114-133 (369)
184 1hjb_A Ccaat/enhancer binding 23.4 2.5E+02 0.0086 21.5 7.8 15 175-189 57-71 (87)
185 3bas_A Myosin heavy chain, str 23.4 2.4E+02 0.0082 21.2 8.0 72 147-221 6-77 (89)
186 1abz_A Alpha-T-alpha, ATA; de 23.2 26 0.00089 23.1 0.8 9 134-142 23-31 (40)
187 3onj_A T-snare VTI1; helix, HA 23.0 2.5E+02 0.0087 21.4 9.6 20 66-85 6-25 (97)
188 2ve7_A Kinetochore protein HEC 23.0 67 0.0023 29.8 4.0 34 168-201 185-218 (315)
189 3hnw_A Uncharacterized protein 22.9 3.1E+02 0.011 22.4 11.4 20 75-94 39-60 (138)
190 1fzc_A Fibrin; blood coagulati 22.6 1E+02 0.0035 24.0 4.2 41 187-227 5-45 (87)
191 2wt7_B Transcription factor MA 22.4 1.2E+02 0.004 23.7 4.6 28 201-228 46-73 (90)
192 3htk_A Structural maintenance 22.4 1.9E+02 0.0065 19.7 5.8 20 173-192 38-57 (60)
193 1nkp_B MAX protein, MYC proto- 22.4 1.3E+02 0.0045 22.1 4.9 28 205-232 49-76 (83)
194 1bb1_B Designed, thermostable 22.2 1.2E+02 0.0041 19.5 3.8 19 92-110 5-23 (36)
195 3nbx_X ATPase RAVA; AAA+ ATPas 22.2 1.3E+02 0.0046 29.4 6.1 54 171-224 446-499 (500)
196 3sja_C Golgi to ER traffic pro 21.9 1.1E+02 0.0036 22.6 4.0 55 166-229 4-58 (65)
197 1lwu_B Fibrinogen beta chain; 21.8 80 0.0027 29.6 4.3 55 88-143 1-57 (323)
198 3vmx_A Voltage-gated hydrogen 21.6 1.4E+02 0.0047 20.9 4.3 37 77-113 6-42 (48)
199 2js5_A Uncharacterized protein 21.5 2.6E+02 0.0088 20.9 7.7 52 140-191 5-61 (71)
200 4fm3_A Uncharacterized hypothe 21.4 3E+02 0.01 21.6 10.9 18 168-185 78-95 (98)
201 3m91_A Proteasome-associated A 21.3 1.4E+02 0.0047 20.9 4.4 33 80-112 14-46 (51)
202 1ses_A Seryl-tRNA synthetase; 21.3 4.2E+02 0.014 25.3 9.4 30 206-235 67-96 (421)
203 2eqb_B RAB guanine nucleotide 21.2 3.1E+02 0.01 21.6 11.6 8 215-222 52-59 (97)
204 1gk6_A Vimentin; intermediate 21.1 1.1E+02 0.0039 21.5 4.0 28 93-122 18-45 (59)
205 3jsv_C NF-kappa-B essential mo 21.1 3E+02 0.01 21.6 9.4 33 123-155 25-57 (94)
206 3ghg_B Fibrinogen beta chain; 20.9 6.1E+02 0.021 25.0 12.0 28 207-234 160-187 (461)
207 3fpp_A Macrolide-specific effl 20.9 1.4E+02 0.0049 26.5 5.7 57 172-232 87-143 (341)
208 1ic2_A Tropomyosin alpha chain 20.7 2.6E+02 0.0088 20.6 8.4 25 207-231 52-76 (81)
209 1ci6_A Transcription factor AT 20.7 1.6E+02 0.0056 20.9 4.8 25 204-228 31-55 (63)
210 1bf5_A Signal transducer and a 20.3 6.9E+02 0.023 25.4 12.2 24 142-165 56-79 (575)
211 1ez3_A Syntaxin-1A; three heli 20.2 3E+02 0.01 21.1 12.1 55 123-186 7-61 (127)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.52 E-value=0.12 Score=61.52 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=81.7
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATH---VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV 140 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h---~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~ 140 (300)
.+|.++...-...+.||-..-..|..+. ..|+.+|+..+-+|..-. .|.|.-+..+.......|..-..+
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~-------~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN-------EQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777888888888888776 478888888888874332 122211222211111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhcc---cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT-DLQQ---VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMA 216 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~-d~qQ---v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMa 216 (300)
+...+++.+-.. ++.+.+.|.. |+.. +.-++++|..+.++|..+.+.+..=++.-.+.-+.+..+++++....
T Consensus 1979 ~~~~~~~~~~~~---ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 1979 RELQVQLDVRNK---EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 2222222222 1122 12355556666666555555554433344444556667777777777
Q ss_pred HHHHHHHHHHHhHHHH
Q 038916 217 RELEKLRAEIANSEKR 232 (300)
Q Consensus 217 rEvekLRael~n~ekR 232 (300)
+|.++|..+++..++|
T Consensus 2056 ~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2056 RETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665554
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.27 E-value=0.43 Score=40.21 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHH
Q 038916 67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQR 107 (300)
Q Consensus 67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~ 107 (300)
+..+......|..+-.+...+......+..++.....++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (284)
T 1c1g_A 82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444333
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.09 E-value=0.096 Score=56.73 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHH
Q 038916 85 QRLAATHVALKQEL 98 (300)
Q Consensus 85 qRLa~~h~aLrqeL 98 (300)
..|-..-..|+++|
T Consensus 924 ~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 924 IGLENKIMQLQRKI 937 (1080)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.35 E-value=1.5 Score=39.45 Aligned_cols=126 Identities=8% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHHHHhHH--HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhh--
Q 038916 66 IEEHLAAQHQ--DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLR-- 138 (300)
Q Consensus 66 lEe~la~Q~~--Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElr-- 138 (300)
|+..+..|.- +|.+|-..-..|+.....|+.++......+..+...+.+++.+ .|..+..+-.++.+.+..+.
T Consensus 7 L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 7 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4444444443 3444433333445555555555555555555555444444442 34444555555555554432
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 139 ----GVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 139 ----a~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
...++..|+..+..++..+...-.|+. .++..+.++++.+..++......++.
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~--e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQ--NEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444444444444444333332 23333444444444444444333333
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.30 E-value=0.18 Score=50.80 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHH-HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 145 SELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ-RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 145 ~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~-r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
+++.|-+.++..+....-|. +++--....++++...|+. -+|..|.|=|..-..++.++++|+++|..+..||+||-
T Consensus 74 EdlsKnsKdseqy~k~~~E~--Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 74 FEYQKNNKDSHSLTTNIMEI--LRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchhHHHHHHHHHHH--HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543222221 1333333335555555555 55555555555556777899999999999999999999
Q ss_pred HHHH
Q 038916 224 AEIA 227 (300)
Q Consensus 224 ael~ 227 (300)
.+|+
T Consensus 152 vDId 155 (562)
T 3ghg_A 152 VDID 155 (562)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.27 E-value=1.2 Score=40.15 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=18.2
Q ss_pred HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 038916 76 DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHY 111 (300)
Q Consensus 76 Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~ 111 (300)
++|.|-..-.+|......|..+|.....++..+...
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~ 47 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKA 47 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555444433
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.91 E-value=0.057 Score=58.60 Aligned_cols=8 Identities=63% Similarity=0.713 Sum_probs=3.8
Q ss_pred hhhHHhhh
Q 038916 41 ALLEEMRE 48 (300)
Q Consensus 41 ~~~~~~r~ 48 (300)
..+|++|.
T Consensus 781 ~~LE~~r~ 788 (1184)
T 1i84_S 781 AHLEEERD 788 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555543
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.82 E-value=0.054 Score=58.75 Aligned_cols=13 Identities=23% Similarity=0.023 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 038916 93 ALKQELEVAQYEL 105 (300)
Q Consensus 93 aLrqeLaa~~~El 105 (300)
.|+.++...+.++
T Consensus 882 ele~~l~~Le~e~ 894 (1184)
T 1i84_S 882 ELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.79 E-value=0.2 Score=49.14 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~ekR 232 (300)
+.+.+++.+..+.+|+++++++|...+.+
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777655544
No 10
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.78 E-value=0.75 Score=37.41 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAM 143 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~l 143 (300)
.+.|..|..-...|..+..||-+|......++ .++.-+. . |.|.|+.....+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~-------~~~edfk-----~----------------KyE~E~~~r~~~ 67 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLA-------EDIMRLR-----E----------------KLQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----H----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----H----------------hhHHHHHHHHHH
Confidence 56666666666666655555555544333332 2221111 1 333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 144 RSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 144 r~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
-.++..++-++......|.+| ..++++|+.||.-.+.-++.|.
T Consensus 68 E~di~~lrK~lD~~~l~r~dL---------E~~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDL---------ERKVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778888888887 3455566666655555555554
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.50 E-value=0.89 Score=49.28 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038916 172 ALKAEIENVKQELQRARAAI 191 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~ 191 (300)
.|...+..|.+|.+.+++++
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555544443
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=94.25 E-value=0.27 Score=42.84 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
++.+|.+.|+||+....+ ..-|-..+.++-++|..+..++...|.++.++
T Consensus 90 Lr~ql~akr~EL~aL~~a-------~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTA-------SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp HHHHHHHHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544333 23344556666666777777777777666544
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.67 E-value=0.62 Score=45.62 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916 182 QELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 182 qEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ 233 (300)
.++++..+.++..++.+...=+++..||+.+..+.+.++.++.|+++.++..
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333434444333333333334445666666666666666666665554433
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.28 E-value=2.8 Score=36.49 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
..|....+.|.+|+....++++.|+....---+=+..|+-.+.++..|+++++.
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433332222233333344444444444443
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.33 E-value=1.5 Score=44.38 Aligned_cols=73 Identities=7% Similarity=0.162 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 117 MDKDVQMREMYDKSVQLEVDLRGVEAMRSELL-KVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 117 ~e~Elq~r~l~~k~~K~EaElra~e~lr~El~-ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
.+.+..++.+++...+=-.....++..+.|+. .|+- .+..++.+|. .+++|.+|+.-|++++.|||++-..|+
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRR---rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS---RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655444444444555666555 5554 4445555665 357788888888888888888776664
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.56 E-value=5.7 Score=47.86 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=12.4
Q ss_pred HHHHhHHhhhhhH---HHHHHHHHHHHHHH
Q 038916 129 KSVQLEVDLRGVE---AMRSELLKVQADIK 155 (300)
Q Consensus 129 k~~K~EaElra~e---~lr~El~ql~aE~q 155 (300)
+....|+||.+.+ ++|+++.++++++.
T Consensus 1995 ~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~ 2024 (3245)
T 3vkg_A 1995 QKVKAYADLEKAEPTGPLREEVEQLENAAN 2024 (3245)
T ss_dssp HHHHHHHCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence 3334455555443 45666666666433
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.30 E-value=2 Score=33.19 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=36.2
Q ss_pred HHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHH
Q 038916 130 SVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK 181 (300)
Q Consensus 130 ~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lR 181 (300)
-.|.|.|+.....+-.++.-++-++..+...|.+|. .+|..|..||.-|+
T Consensus 34 k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE--~kvesL~eEl~fLk 83 (86)
T 3swk_A 34 REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE--RKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 347788887667788888899999999999999982 34555555555443
No 18
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.63 E-value=2.3 Score=34.79 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh---------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTD---------LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d---------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
+.|-.++.+++-++-++...|+||++ ..||..|..-+.+..+.|.-.+.+|.+=+. +--+|+..+-..
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL~~Lt~~ 85 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44555566777777777778888872 577899999999999999999999988773 334456666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 212 LISMARELEKLRAEIA 227 (300)
Q Consensus 212 lisMarEvekLRael~ 227 (300)
-..+..|+.+|-.+=+
T Consensus 86 Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 86 REQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHTC---------
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6666666666655533
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.06 E-value=3.7 Score=39.93 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
+.|..|+.-|+.++-+++++-..|++
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555533
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=88.79 E-value=1.5 Score=38.24 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
.++++++...+.|++.|... +=.|..+|.++..||..+|+++...|..+..+
T Consensus 88 ~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555443321 11166789999999999999888877665544
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.85 E-value=12 Score=32.97 Aligned_cols=39 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHH
Q 038916 66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYE 104 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~E 104 (300)
||..|..-..-+..|-..|.+|-.....++..+..++.|
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555566666666666665555555555
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.58 E-value=7.5 Score=34.30 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
++..|...+..+..|+...+.-+..-+ .+...++-.++++|..+..+.+.|+.
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444443322 22223344444444444444444433
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.91 E-value=1.8 Score=35.64 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHH
Q 038916 101 AQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEA 142 (300)
Q Consensus 101 ~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~ 142 (300)
.++||.+|...+.+++.|.--.+..|..++..||+|+-.-+.
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555677666677788888888888774443
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.87 E-value=8.8 Score=31.14 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 038916 98 LEVAQYELQRMV 109 (300)
Q Consensus 98 Laa~~~Elq~L~ 109 (300)
|..++.||..|.
T Consensus 31 l~~~k~Ei~elr 42 (129)
T 3tnu_B 31 LRNTKHEISEMN 42 (129)
T ss_dssp ---CHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 25
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.84 E-value=2.9 Score=32.37 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=23.3
Q ss_pred HhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 132 QLEVDLRGVEAMRSELLKVQADIKELTA 159 (300)
Q Consensus 132 K~EaElra~e~lr~El~ql~aE~q~L~a 159 (300)
-+|+||++=..+.+||.+++++...+..
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~es 45 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFAS 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999888899999998888777765
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.31 E-value=12 Score=29.32 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=44.6
Q ss_pred HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHH---HHHHHHHHHhhhhhhchhhhhhhhHHH
Q 038916 132 QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK---QELQRARAAIEFDKKGYAENYEHGQVM 208 (300)
Q Consensus 132 K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lR---qEl~r~R~a~e~Ekk~~~e~~eQ~qaM 208 (300)
.++++++ .++.+=..+-.++..|..-+.+|. ..|.++.+|...+. .++.+-+..|.... .+...+..++
T Consensus 8 ~l~~eL~---~l~~eE~~L~~eL~~lEke~~~l~--~el~~le~E~~~L~~eE~~~w~eyn~~~~ql---~e~~dE~~Sl 79 (96)
T 3q8t_A 8 QLQRELK---ELALEEERLIQELEDVEKNRKVVA--ENLEKVQAEAERLDQEEAQYQREYSEFKRQQ---LELDDELKSV 79 (96)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3444444 455555566666777777777663 23334444444332 23344444444444 4445555666
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 209 EKKLISMARELEKLR 223 (300)
Q Consensus 209 eknlisMarEvekLR 223 (300)
+..|..-..-++||+
T Consensus 80 ~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 80 ENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666666665
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.59 E-value=8.5 Score=31.37 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhhchhhh
Q 038916 184 LQRARAAIEFDKKGYAEN 201 (300)
Q Consensus 184 l~r~R~a~e~Ekk~~~e~ 201 (300)
|.....+++.|-.+|...
T Consensus 110 Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 110 LLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444433
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.18 E-value=3.8 Score=33.61 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 038916 142 AMRSELLKVQA 152 (300)
Q Consensus 142 ~lr~El~ql~a 152 (300)
.|+.|+..++.
T Consensus 19 ~Lkreie~lk~ 29 (120)
T 3i00_A 19 RLYREISGLKA 29 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.64 E-value=22 Score=30.42 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
.+++..-+|-+|. .+|.++.....-++.|...|.++. + +..++.....|+.+....+.-|++...
T Consensus 11 Ain~qs~LeD~L~---~~R~el~~~~~ri~~lE~~r~~~~---~---l~~~~~~~~~e~~~L~~~l~~E~~~R~------ 75 (154)
T 2ocy_A 11 SVDKQSHLEEQLN---KSLKTIASQKAAIENYNQLKEDYN---T---LKRELSDRDDEVKRLREDIAKENELRT------ 75 (154)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHH---H---HHTHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHhhhhHHHHHHHHHHHHHHHHHH------
Confidence 3444455554443 455666666666666666666662 2 223344455555555555555543332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 206 qaMeknlisMarEvekLRael 226 (300)
..|+....+.+|||-|=|.|
T Consensus 76 -~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 76 -KAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp -HHHTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554443
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.24 E-value=20 Score=29.72 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHHHHH--HHHHHhHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916 121 VQMREMY--DKSVQLEVDLRGVE---AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK 195 (300)
Q Consensus 121 lq~r~l~--~k~~K~EaElra~e---~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek 195 (300)
-+|+++. +..-.+-.+--++= .+-+|+.+++.++..|.. ++..+..||..+++||....-.++.-+
T Consensus 39 ~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~---------~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 39 NKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSL---------DIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 22555554444442 266777777776665542 334457788888888888666665554
Q ss_pred hchhhhhhhhHHHH
Q 038916 196 KGYAENYEHGQVME 209 (300)
Q Consensus 196 k~~~e~~eQ~qaMe 209 (300)
+...+..+....++
T Consensus 110 ~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 110 KEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44333333333333
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.70 E-value=11 Score=29.07 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=34.5
Q ss_pred hhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916 193 FDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA 236 (300)
Q Consensus 193 ~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~ 236 (300)
--|-.|....++.+....+-..+.+|.++|+.|..+-+.|.++-
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677778888889999999999999988898874
No 32
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=81.34 E-value=14 Score=30.99 Aligned_cols=105 Identities=11% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhch--
Q 038916 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGY-- 198 (300)
Q Consensus 121 lq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~-- 198 (300)
--+...++++-.+..+|..++..-++|.+++..+-. +...+=.-.+++..+..++..+-..+...-..++.+.+..
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~--~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILS--APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334556666666666666666655566555554221 1110000112344444444444444444444444332211
Q ss_pred -----h---hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 199 -----A---ENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 199 -----~---e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
. -.--|..++.+.|..+-.+.++++..+.
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123677888999999999988877654
No 33
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=80.44 E-value=18 Score=28.01 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHH--H-HHHHHhHhhc
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKEL--T-AVRQELTDLQ 168 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L--~-a~RqEL~d~q 168 (300)
...+++......+|......+.++-.+ .-...+..+|.. ++...+=|.||+.|++.+ . +.|..+ +.
T Consensus 4 ~~YE~df~~~~~~i~~~l~~~~~~~ge------~Rk~~i~~ie~~---ldEA~ell~qMelE~~~~~~p~~~R~~~--~~ 72 (97)
T 3onj_A 4 ISYESDFKTTLEQAKASLAEAPSQPLS------QRNTTLKHVEQQ---QDELFDLLDQMDVEVNNSIGDASERATY--KA 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCHHHHHHH--HH
Confidence 345777778888887776555544332 112223344533 455556688999999999 4 468887 56
Q ss_pred ccHHHHHHHHH-HHHHHHHHH
Q 038916 169 QVPALKAEIEN-VKQELQRAR 188 (300)
Q Consensus 169 Qv~al~aEl~~-lRqEl~r~R 188 (300)
+|+.-+++|+. ++.|+..+.
T Consensus 73 klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 73 KLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999 999998764
No 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=80.05 E-value=18 Score=28.32 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 202 YEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 202 ~eQ~qaMeknlisMarEvekLRael 226 (300)
--|..++.+.|..+-.+.+..-.++
T Consensus 94 ~~q~~~L~~kf~e~m~~y~~~q~~y 118 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMSEYNATQSDY 118 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888754443
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.05 E-value=22 Score=28.80 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 038916 146 ELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL~ 165 (300)
++.+++.|+.....--|+|.
T Consensus 92 eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 92 QLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33355555555444445553
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.84 E-value=21 Score=28.85 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 95 KQELEVAQYELQRMV 109 (300)
Q Consensus 95 rqeLaa~~~Elq~L~ 109 (300)
+.++.-..+-||.|.
T Consensus 35 k~Ei~elrr~iq~L~ 49 (129)
T 3tnu_B 35 KHEISEMNRMIQRLR 49 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.55 E-value=30 Score=29.97 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038916 118 DKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKK 196 (300)
Q Consensus 118 e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk 196 (300)
.-|.-.++|.+++..++.. -..|-+|+.+|.+. |...|...+ -..-+..+..-|.+|..||-+.+.....-..
T Consensus 45 ~~E~~~rELq~~~~~L~~~---k~~Leke~~~LQa~---L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 45 QLESLNRELQERNRILENS---KSQTDKDYYQLQAI---LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777877777744 34566677777773 333443331 0111333444556677777777766666555
Q ss_pred chhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHh
Q 038916 197 GYAENYEHGQVMEKKLISMA----RELEKLRAEIAN 228 (300)
Q Consensus 197 ~~~e~~eQ~qaMeknlisMa----rEvekLRael~n 228 (300)
-+....+-+-.+||+--+|. -|+--|..-++-
T Consensus 119 e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55666667777777766666 445555544443
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.28 E-value=13 Score=31.24 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 142 AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
..+.++....+-++++..++.++. .+..++.....|+.+....++-|++... ..|+....+.+|||-
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~------~l~~~l~~~~~e~~~L~~~l~eE~~~R~-------~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYN------TLKRELSDRDDEVKRLREDIAKENELRT-------KAEEEADKLNKEVED 78 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTTTHHHHHHTHHHHHHHTTSHHH-------HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 345556666666667777776662 2224455566666666666666654433 455555666666666
Q ss_pred HHHHH
Q 038916 222 LRAEI 226 (300)
Q Consensus 222 LRael 226 (300)
|=|.|
T Consensus 79 LTasL 83 (135)
T 2e7s_A 79 LTASL 83 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 39
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=74.16 E-value=6.6 Score=27.75 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
|+++..-..++..|..-|.+|+.+=..-|++|...+.||..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877888999999999999998888888888888887764
No 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.15 E-value=49 Score=32.18 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=60.2
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh--cc----cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhH
Q 038916 133 LEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL--QQ----VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ 206 (300)
Q Consensus 133 ~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~--qQ----v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~q 206 (300)
+..+++.++.+.+||.++..+++.|...-++.-.. ++ +....+....+..|+.+.-+ .-...-++++
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~-------~~~~~~~~i~ 108 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN-------TILAHENTIQ 108 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH-------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH-------HhcchHHHHH
Confidence 55678888888889999999999888888877411 11 22224444456665555322 1222335677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR 232 (300)
.|+..|.++...|+.|...|..-+.+
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777888888888888777655443
No 41
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=72.97 E-value=32 Score=26.92 Aligned_cols=85 Identities=8% Similarity=0.149 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHhHhhc
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTA-VRQELTDLQ 168 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a-~RqEL~d~q 168 (300)
-....+++......+|......+.+.- ..| +-...+.++|.. ++...+=|.||+.|++.+.+ .|..+ +.
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~-~~e----~rk~~i~~ie~~---ldEA~eLl~qMelE~r~~p~s~R~~~--~~ 85 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTA-GTE----EKKKLVRDFDEK---QQEANETLAEMEEELRYAPLTFRNPM--MS 85 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CSH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHTSCHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-CcH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCHHHHHHH--HH
Confidence 345677788888888866654432220 111 112223355533 44555557789999988863 46666 46
Q ss_pred ccHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQEL 184 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl 184 (300)
+|+.-+++|+.++.|+
T Consensus 86 klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 86 KLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7888888888888876
No 42
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=72.28 E-value=23 Score=35.31 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 186 r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
-+|..++|=|.+-..+++++++|.++|+....+|+||-.+|.-
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677788899999999999999999999999863
No 43
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=72.22 E-value=14 Score=28.94 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHhHhhcccHH
Q 038916 94 LKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTA-VRQELTDLQQVPA 172 (300)
Q Consensus 94 LrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a-~RqEL~d~qQv~a 172 (300)
.+++......+|......+.++..+ - -...+.++|.. ++...+=|.||..|++.+.+ .|..+ +.+|+.
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~ge--e----rk~~i~~ie~~---l~EA~ell~qMelE~r~~p~~~R~~~--~~klr~ 78 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPPD--E----KKQMVANVEKQ---LEEARELLEQMDLEVREIPPQSRGMY--SNRMRS 78 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTT--T----HHHHHHHHHHH---HHHHHHHHHHHHHHHTTSCTTTHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcH--H----HHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCHHhHHHH--HHHHHH
Confidence 3566667777776665444433221 1 11223345533 34455557788888888753 36655 467888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 173 LKAEIENVKQELQRARAA 190 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a 190 (300)
-+++|+.++.|+.+++..
T Consensus 79 Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 79 YKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 888999998888876543
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.87 E-value=35 Score=32.36 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=25.0
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 194 DKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 194 Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
|||... ...-++.+|.++-.+.++|+.+||+|.
T Consensus 435 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 435 DAEKAQ-GQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 334688889999999999999999984
No 45
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=71.78 E-value=49 Score=28.66 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhch----hhhhhhhHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGY----AENYEHGQVMEKKL 212 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~----~e~~eQ~qaMeknl 212 (300)
+++..+...+...+.++..+...++--+..+ ...++++|.||.+.
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R 211 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETH 211 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666655555554433333 23345555555543
No 46
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=70.10 E-value=13 Score=29.37 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH---hhhhhhchhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 169 QVPALKAEIENVKQELQRARAA---IEFDKKGYAENYEH--GQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a---~e~Ekk~~~e~~eQ--~qaMeknlisMarEvekLRael~n 228 (300)
+...|.+.|+.+.+||+....+ ++-=++.|.++-+- -.+++..|..+...|++|++++-.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666554333 22222222222211 223377788888888888887743
No 47
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.62 E-value=85 Score=30.50 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=12.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 133 LEVDLRGVEAMRSELLKVQADIKELT 158 (300)
Q Consensus 133 ~EaElra~e~lr~El~ql~aE~q~L~ 158 (300)
++.-+..+..|+.-|..++.++|+|+
T Consensus 129 V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 129 VIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555444
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.63 E-value=81 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
.......+.+.+|++..|..++.+.+...+..++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 34455555666666666666666655554443333
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.29 E-value=47 Score=26.97 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRARA 189 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~ 189 (300)
-+|+.|++.++.-+.....-|+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERa 83 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERH 83 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchh
Confidence 3455555555554444444333
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.73 E-value=46 Score=26.68 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 208 MEKKLISMARELEKLR 223 (300)
Q Consensus 208 MeknlisMarEvekLR 223 (300)
+|.++.++.-||.=|+
T Consensus 88 LE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 88 LERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 51
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.35 E-value=11 Score=37.92 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 038916 89 ATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDK 129 (300)
Q Consensus 89 ~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k 129 (300)
+++.-++|--+.++.|=.+=. +...++..|.+.|+.+++
T Consensus 297 ~d~~e~qqm~~~a~e~~~~~~--~e~~~l~~~~~~~~~~~~ 335 (575)
T 2i1j_A 297 PDTIDVQQMKAQAREEKLAKQ--AQREKLQLEIAARERAEK 335 (575)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--HHHTTCCSCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 566777777777777655544 666666665555544443
No 52
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=67.18 E-value=14 Score=25.52 Aligned_cols=9 Identities=56% Similarity=0.649 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 038916 177 IENVKQELQ 185 (300)
Q Consensus 177 l~~lRqEl~ 185 (300)
|+++++||.
T Consensus 32 IeAi~~El~ 40 (45)
T 1use_A 32 IEAFVQELR 40 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.75 E-value=86 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael~ 227 (300)
.+++.++..+..+...|++|-..+.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666655553
No 54
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.53 E-value=43 Score=26.49 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=9.4
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 038916 86 RLAATHVALKQELEVAQYEL 105 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~El 105 (300)
.|+.+..-|.+....++.||
T Consensus 33 ELs~tfarLc~~Vd~t~~eL 52 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHL 52 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444
No 55
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=63.18 E-value=10 Score=24.06 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038916 90 THVALKQELEVAQYELQRMV 109 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~ 109 (300)
...+|+||+++.+.||-.|.
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888776655
No 56
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=63.02 E-value=76 Score=31.80 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
.++.+|.+.++|.-..+.+.++.+++.|..+++..+.=.+++..=....|.-.+++
T Consensus 44 ~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 44 AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999988887777777555555555444
No 57
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=62.72 E-value=22 Score=27.75 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.5
Q ss_pred HHHHhHHhhhhhH
Q 038916 129 KSVQLEVDLRGVE 141 (300)
Q Consensus 129 k~~K~EaElra~e 141 (300)
+...+|..++.++
T Consensus 20 ~~~~LE~~l~e~E 32 (95)
T 3mov_A 20 ESRACLERIQELE 32 (95)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 58
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.41 E-value=32 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038916 208 MEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 208 MeknlisMarEvekLRael~n 228 (300)
-++.+..+..|+++||.-|..
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999987753
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=60.97 E-value=18 Score=26.05 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
-|=+|+.++..|+||..+...++|-|.++...
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~ 42 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKD 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999999998865443
No 60
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.87 E-value=65 Score=26.09 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhHhhc
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSE-LLKVQADIKELTAVRQELTDLQ 168 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~E-l~ql~aE~q~L~a~RqEL~d~q 168 (300)
.-+-|+.+|.....|-..|.......+.++-.++-.|.+.+...|..|..+...-.. -..++-.+++|..-|..+. .
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~--~ 91 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVS--E 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 345677778877777777777778888899999999999999999888755432222 2334555566666666662 3
Q ss_pred ccHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVK 181 (300)
Q Consensus 169 Qv~al~aEl~~lR 181 (300)
++..|..|-+.|.
T Consensus 92 eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 92 ELVRLQKDNDSLQ 104 (112)
T ss_dssp C------------
T ss_pred HHHHHHhhccchh
Confidence 4455555555554
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.59 E-value=26 Score=27.91 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=25.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 197 GYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 197 ~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
+.+-++---++.+.. .+-..+++||++|++--+.|.++
T Consensus 56 TKVlH~~~NPa~~a~-~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 56 TKVLHMSLNPTSVAR-QRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp EEEEEESSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555665553 34579999999999877666654
No 62
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.51 E-value=46 Score=24.20 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=12.2
Q ss_pred HHHHHHHhHhh-cccHHHHHHHHHHH
Q 038916 157 LTAVRQELTDL-QQVPALKAEIENVK 181 (300)
Q Consensus 157 L~a~RqEL~d~-qQv~al~aEl~~lR 181 (300)
|...|.||+++ .+|..|..||++++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555543 23455555555543
No 63
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=59.21 E-value=92 Score=27.27 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=10.7
Q ss_pred hhhhccchhhhHHHHHHHH
Q 038916 80 LLADNQRLAATHVALKQEL 98 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeL 98 (300)
|+.+..+++..|..|-+.|
T Consensus 74 ~l~~~e~~a~~h~~~a~~L 92 (301)
T 2efk_A 74 ILQEVNDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445666666666665
No 64
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.78 E-value=70 Score=25.76 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 038916 176 EIENVKQELQRARAAIEF 193 (300)
Q Consensus 176 El~~lRqEl~r~R~a~e~ 193 (300)
+.+..+.-|+..+..++.
T Consensus 66 e~EE~~~~L~~~k~eLe~ 83 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEA 83 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 65
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=58.59 E-value=1.3e+02 Score=30.48 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK 211 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn 211 (300)
...+...|++++++|++.....+...+.....+++++.++.+
T Consensus 632 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 673 (695)
T 2j69_A 632 SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQED 673 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHH
Confidence 456778888999999999888888777777777777774443
No 66
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.87 E-value=61 Score=24.49 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 142 AMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.+..++.++..+++.+..+..||.
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777777777776
No 67
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.57 E-value=68 Score=28.98 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 038916 210 KKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 210 knlisMarEvekLRael~n~ek 231 (300)
.++.....+++.++++++.++.
T Consensus 129 a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 129 AEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554443
No 68
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=56.37 E-value=1e+02 Score=26.94 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~ek 231 (300)
+.|+--+..+..+++++|.+++.+++
T Consensus 220 ~~~~p~~~~l~~~l~~~r~~~~~~~~ 245 (265)
T 2q12_A 220 EQLEEFLANIGTSVQNVRREMDSDIE 245 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999987766
No 69
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=55.51 E-value=12 Score=37.75 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 038916 211 KLISMARELEKLRAEIANSEKRA 233 (300)
Q Consensus 211 nlisMarEvekLRael~n~ekR~ 233 (300)
+-.....|++..|.....++.++
T Consensus 434 e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 434 ETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp --------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555554444444
No 70
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=55.00 E-value=76 Score=26.24 Aligned_cols=55 Identities=7% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R 188 (300)
+..+++++-+|...|+..+.++ .+..+++.|.....+..+..++..++++++...
T Consensus 6 ~~~I~d~A~eL~~aI~eseeyk-----------~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q 60 (151)
T 2pih_A 6 KKDIVQQARNLAKMISETEEVD-----------FFKRAEAQINENDKVSTIVNQIKALQKQAVNLK 60 (151)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHH-----------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHH-----------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777554432 233333333333344444555555555555433
No 71
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=54.83 E-value=39 Score=24.78 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R 188 (300)
.|.+|+.|-..+|.|||.-|
T Consensus 52 evealrkeaaairdelqayr 71 (73)
T 2a3d_A 52 EVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp TTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46666666677777776543
No 72
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.42 E-value=34 Score=30.24 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
..+|++|..-|-.|+.|..+|.+|...-....+++.+.+.+|+.+.
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998888776655555555555555554443
No 73
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=54.10 E-value=17 Score=25.23 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQ 185 (300)
Q Consensus 170 v~al~aEl~~lRqEl~ 185 (300)
+..++.||..+++|+.
T Consensus 17 L~E~RkElqK~K~EII 32 (45)
T 1use_A 17 LEEVKKELQKVKEEII 32 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 74
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=53.97 E-value=28 Score=28.73 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916 143 MRSELLKVQADIKELTAVRQELT------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAE 200 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e 200 (300)
+++||.++.. +|...|--|. |.--|.....|++.|-.||.+.+..-++++..-..
T Consensus 8 ~K~Eiq~L~d---rLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~ 68 (123)
T 2lf0_A 8 EKNEIKRLSD---RLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 68 (123)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5677777776 5555555555 44457788888888888888888887777644433
No 75
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.31 E-value=33 Score=23.39 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKL 222 (300)
Q Consensus 205 ~qaMeknlisMarEvekL 222 (300)
+|++||.|-.+..-++-|
T Consensus 29 lqalekklaalksklqal 46 (48)
T 1g6u_A 29 LQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666666666555443
No 76
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.36 E-value=66 Score=25.48 Aligned_cols=17 Identities=0% Similarity=0.317 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKE 156 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~ 156 (300)
++.+|+++.+++.++..
T Consensus 7 ~e~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSD 23 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666666655444
No 77
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.15 E-value=1.9e+02 Score=28.88 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhH
Q 038916 91 HVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVE 141 (300)
Q Consensus 91 h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e 141 (300)
-..-+.+|++-|.||-|+...=.+.+++-|.-+.+.-.+...+++|..+++
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345678899999999999866666667777778888888888887765443
No 78
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=51.55 E-value=24 Score=27.88 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 167 LQQVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
.-++..+..||+.+..+|...++.|+-=
T Consensus 55 ~Rk~DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 55 NRKLDSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888753
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=51.43 E-value=15 Score=33.74 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916 67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV 109 (300)
Q Consensus 67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~ 109 (300)
|+++..-..++..|..-|.+|..+--.++++|...+.||.+|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888788889999999999999999999999999999999886
No 80
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=50.67 E-value=1.1e+02 Score=25.75 Aligned_cols=94 Identities=27% Similarity=0.339 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH----
Q 038916 90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT---- 165 (300)
Q Consensus 90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~---- 165 (300)
....||.++..+|+-++..-.....--.+.-.|...+. |...+|||++.-++|-+-|.. -+..+|.||.
T Consensus 61 Ei~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiR-KLrELEADLKEKDsMVe~LT~------TiG~LrKELEdEkl 133 (167)
T 4gkw_A 61 EIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMR-KLGELEADLKEKDSMVESLTE------TIGILRKELENEKL 133 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHTHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHH-HHHHHHhHHhhhhHHHHHHHH------HHHHHHHHHHHHHH
Q ss_pred ----hhcccHHHHHHHHHHHHHHHHHHHH
Q 038916 166 ----DLQQVPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 166 ----d~qQv~al~aEl~~lRqEl~r~R~a 190 (300)
.......|+-|-+++.+-|+.-|++
T Consensus 134 K~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 134 KAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHh
No 81
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=49.95 E-value=1.5e+02 Score=26.91 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
+-|.....+|+...+ +..|.++.-|+.+|--.+.....+=+.=.+|..|+.+|+.-|..
T Consensus 174 q~v~~~~~~le~~~~--~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~ 232 (253)
T 2d1l_A 174 QDVNDKYLLLEETEK--QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISED 232 (253)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555666666655 46679999999999999999988888888899999999987653
No 82
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=49.91 E-value=1.1e+02 Score=25.39 Aligned_cols=91 Identities=10% Similarity=0.248 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hHh--hcccHHHHHHHHHHHHHHHHHHHHhhhhhhc-------hhhhhhhhHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQE-LTD--LQQVPALKAEIENVKQELQRARAAIEFDKKG-------YAENYEHGQVME 209 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqE-L~d--~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~-------~~e~~eQ~qaMe 209 (300)
++.++..+.++...+.+|..+-.. |+. ......++.+|+.+.+++...-..+..-.|. ..-.--|...+-
T Consensus 11 ~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~ 90 (196)
T 1fio_A 11 ISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSR 90 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 444555555555555555555444 220 0011134555555555544443333332222 112223667888
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 038916 210 KKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 210 knlisMarEvekLRael~n~e 230 (300)
+.|..+-.+.+++...+....
T Consensus 91 ~~f~~~~~~fq~~Q~~~~~~~ 111 (196)
T 1fio_A 91 QRFLKLIQDYRIVDSNYKEEN 111 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888876443
No 83
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.45 E-value=1.2e+02 Score=25.77 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHH
Q 038916 137 LRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ 185 (300)
Q Consensus 137 lra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~ 185 (300)
...++.|+.|+.+++..+..|...-.|- .+-+..+..|+.+++-++.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK--~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALK--NKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666555554333332 1224444555555544433
No 84
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.00 E-value=35 Score=26.05 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELE 220 (300)
Q Consensus 204 Q~qaMeknlisMarEve 220 (300)
..+.+|.+|.++++.|.
T Consensus 43 ~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 43 QREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 33455555555554433
No 85
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.86 E-value=43 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQR 186 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r 186 (300)
.+..+.++++.+.++|..
T Consensus 57 ~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 86
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.13 E-value=76 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R 188 (300)
.+|.+|..||+.|+-|-++.+
T Consensus 65 ~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444
No 87
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=48.10 E-value=85 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHhhh
Q 038916 120 DVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElr 138 (300)
++++..+-.++..+|+++.
T Consensus 25 ~~~~~~~q~~i~~lE~eL~ 43 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 88
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=47.91 E-value=1.6e+02 Score=26.70 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038916 171 PALKAEIENVKQELQRARAAI 191 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~ 191 (300)
..++..+..+-+++.....+|
T Consensus 201 e~l~~~l~~~~~~~~qq~e~f 221 (273)
T 3s84_A 201 EGLQKSLAELGGHLDQQVEEF 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444333333333
No 89
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=47.78 E-value=80 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+.+++.+.|..+|++.|-...+||.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678889999999999999999995
No 90
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.76 E-value=1.2e+02 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=20.5
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038916 82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFR 116 (300)
Q Consensus 82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r 116 (300)
.|-+-=|.+-+++||+|+.-=-|++-.. .+.+++
T Consensus 32 ~~le~sassDa~vrq~Ia~LP~eVsd~s-~l~klk 65 (152)
T 4fla_A 32 QDLENAASGDATVRQKIASLPQEVQDVS-LLEKIT 65 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGTCGG-GGGGCC
T ss_pred HHhhccccchHHHHHHHHcCCccccCHH-HHHHcc
Confidence 3444457777788888877666665444 344443
No 91
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.71 E-value=78 Score=26.78 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916 143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG 205 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~ 205 (300)
+-.|+.|++-+.+++.+.-+--+..--.|...+-++.+++-+...++.+..=|+....+++|+
T Consensus 41 ~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 41 ADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666665433221100001244444455555444333333333333333333333
No 92
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=47.00 E-value=20 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~ 227 (300)
|...+...|...++||++|+.||+
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477778888888888888884
No 93
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=46.71 E-value=1.1e+02 Score=24.53 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 146 ELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL 164 (300)
++.++...+.+....|.+|
T Consensus 21 el~~lke~l~k~e~~r~el 39 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKEL 39 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 94
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=45.69 E-value=79 Score=23.69 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=35.1
Q ss_pred HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 038916 77 IQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMY 127 (300)
Q Consensus 77 i~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~ 127 (300)
|++|+.||+-|- .+|+|-=.+-+.=...|+..-.++|-|+|.=+.-+-
T Consensus 10 ~q~ll~EN~~Lr---eAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~ 57 (70)
T 3brv_B 10 LQRCLEENQELR---DAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQ 57 (70)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678999999885 456666666666666677778999999888655443
No 95
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.62 E-value=52 Score=23.37 Aligned_cols=18 Identities=56% Similarity=0.691 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQ 185 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~ 185 (300)
+||.+|+.|-..||+||.
T Consensus 10 ~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 10 KQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 677777777777777765
No 96
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.40 E-value=2.5e+02 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038916 209 EKKLISMARELEKLRAE 225 (300)
Q Consensus 209 eknlisMarEvekLRae 225 (300)
+++...|..||+.|+-.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555544
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.46 E-value=79 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 146 ELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL 164 (300)
.+..|+.++..|.....+|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 98
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.25 E-value=1.3e+02 Score=24.32 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 038916 94 LKQELEVAQY 103 (300)
Q Consensus 94 LrqeLaa~~~ 103 (300)
|...|..+..
T Consensus 29 L~~~L~~AEe 38 (110)
T 2v4h_A 29 LRQQLQQAEE 38 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 99
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=42.91 E-value=23 Score=30.14 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 038916 143 MRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 143 lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+..++..+++++..|.+-.+-|.
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444555555444554444444
No 100
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.85 E-value=1e+02 Score=23.04 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.4
Q ss_pred Hhhhhhhch
Q 038916 190 AIEFDKKGY 198 (300)
Q Consensus 190 a~e~Ekk~~ 198 (300)
+++.|-.+|
T Consensus 65 ~Ld~EIatY 73 (84)
T 1gk4_A 65 ALDIEIATY 73 (84)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333333333
No 101
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=42.81 E-value=88 Score=24.23 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038916 177 IENVKQELQRARAAIEF 193 (300)
Q Consensus 177 l~~lRqEl~r~R~a~e~ 193 (300)
+.+|++||+-++.....
T Consensus 38 i~~Lt~eLq~A~~eaNp 54 (90)
T 4b6x_A 38 VNNLTDELQDAIDEANP 54 (90)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHccCH
Confidence 45677777776654443
No 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.64 E-value=62 Score=28.55 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHh
Q 038916 168 QQVPALKAEIENVKQELQRARAAI 191 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~ 191 (300)
+|+.....||..|+.+|+.++...
T Consensus 34 ~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 34 EKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455566666666666655555
No 103
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.32 E-value=86 Score=21.97 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 146 ELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL 164 (300)
.+..++.++..|.....+|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.68 E-value=1.2e+02 Score=23.49 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+..+-.+|+.+...|.-+...++..-|.. ..-|.++.++.|=|+-
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~-------~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENA-------AKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445556666665555555555443322 2345555555555543
No 105
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.59 E-value=1.6e+02 Score=24.96 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=3.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael 226 (300)
++.|..+..-.+++|+++-.|+..
T Consensus 108 EekQIseASRqgLrRDLeASReAK 131 (146)
T 2xnx_M 108 EEKQISDASRQSLRRDLDASREAK 131 (146)
T ss_dssp GGTTTC------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444555666677788888777754
No 106
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=41.43 E-value=75 Score=32.37 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=21.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHH
Q 038916 114 SFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSEL 147 (300)
Q Consensus 114 ~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El 147 (300)
....|=|-.+.++......+|.|++.++.+.++.
T Consensus 12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F 45 (585)
T 1y1u_A 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYF 45 (585)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677777777777777666666653
No 107
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.96 E-value=73 Score=25.18 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQA 152 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~a 152 (300)
..+|-+.+.+|+.++..+|.+-.++..++.
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333334444444444444443333333333
No 108
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.79 E-value=2.4e+02 Score=28.98 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFD 194 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~E 194 (300)
.+..+..|+..+++++...++..+.|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (854)
T 1qvr_A 431 RLKAIEAEIAKLTEEIAKLRAEWERE 456 (854)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444
No 109
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.66 E-value=1.1e+02 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~ek 231 (300)
.+.++.+.|..+-.|+++.=..+..+..
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443333
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.56 E-value=64 Score=25.94 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
.+.++++.+|.|.|+ +.|+.++..++..+....+..+||
T Consensus 6 ~~~~~~~~~~~e~e~---~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 6 RRALLERCLKGEGEI---EKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888764 355555555555554444443333
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.38 E-value=91 Score=25.17 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916 182 QELQRARAAIEFDKKGYAENYEHGQVM-EKKLISMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 182 qEl~r~R~a~e~Ekk~~~e~~eQ~qaM-eknlisMarEvekLRael~n~ekR~r 234 (300)
.+|+.....+.+|.-..-..+++.+.- -+.+-++.+||.+||.+-..-.++.|
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.00 E-value=2.4e+02 Score=26.45 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
+.|..+..||..+.++|+-+++.++-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777778888888888888877754
No 113
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=39.94 E-value=38 Score=24.45 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=26.3
Q ss_pred hhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 195 KKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 195 kk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
|.-|...+.+++-+|-.-..|-+||++|++=|
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888899999999999865
No 114
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.85 E-value=1.3e+02 Score=23.31 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIK 155 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q 155 (300)
|+.||..+..|+.|..
T Consensus 4 MdaIKkKm~~lk~e~e 19 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445554444444433
No 115
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=39.74 E-value=2e+02 Score=25.35 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY 202 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~ 202 (300)
++++++-++.. ...+.+++..+..+.+.|.....+| +.|+..+..+-+.+..+|-..=..+=.|||..+.++
T Consensus 123 i~elfd~~~~~------~~~~~~~~~~L~~e~~~l~~~~~~l--~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~l 194 (213)
T 1ik9_A 123 IRELIAYALDT------IAENQAKNEHLQKENERLLRDWNDV--QGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSL 194 (213)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 36666666554 3345556666666666666555555 356666666666667777777777777888887755
Q ss_pred h
Q 038916 203 E 203 (300)
Q Consensus 203 e 203 (300)
+
T Consensus 195 q 195 (213)
T 1ik9_A 195 H 195 (213)
T ss_dssp H
T ss_pred H
Confidence 5
No 116
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=39.37 E-value=2e+02 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 038916 170 VPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a 190 (300)
+...+..-+...+|+..++..
T Consensus 159 l~KaK~~Y~~~c~e~e~a~~~ 179 (312)
T 3abh_A 159 VEAAKKAHHAACKEEKLAISR 179 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555444443
No 117
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=38.84 E-value=3.9e+02 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=18.6
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 131 VQLEVDLRGVEAMRSELLKVQADIKELTA 159 (300)
Q Consensus 131 ~K~EaElra~e~lr~El~ql~aE~q~L~a 159 (300)
.||..+.. .+..|.+|.+++++--.+++
T Consensus 691 qki~d~a~-aE~~r~~Llel~a~s~aves 718 (861)
T 2zuo_A 691 QKILDQSE-AEKARKELLELEAMSMAVES 718 (861)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhHhhh
Confidence 45655555 56677777777777666655
No 118
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=38.49 E-value=2.1e+02 Score=25.37 Aligned_cols=21 Identities=5% Similarity=0.284 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 038916 211 KLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 211 nlisMarEvekLRael~n~ek 231 (300)
++.+...+++.++++++.++.
T Consensus 129 ~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 129 QIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp HHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554443
No 119
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=38.36 E-value=1.4e+02 Score=23.16 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
...+++..-.|.......++.|.... ...+...|...|-+-++++.+|+.++
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~--p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYA--PLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555566666778888897543 36678888899999999999988775
No 120
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.19 E-value=1.1e+02 Score=21.87 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038916 145 SELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 145 ~El~ql~aE~q~L~a~RqEL 164 (300)
++...+..+++.|.....+|
T Consensus 23 ~~~~~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.82 E-value=1.7e+02 Score=24.02 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 038916 218 ELEKLRAEIA 227 (300)
Q Consensus 218 EvekLRael~ 227 (300)
|||+||.+..
T Consensus 93 e~erlr~~~~ 102 (121)
T 3mq7_A 93 EVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 4555555543
No 122
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.58 E-value=88 Score=24.07 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038916 209 EKKLISMARELEKLRAEI 226 (300)
Q Consensus 209 eknlisMarEvekLRael 226 (300)
|+....+..||++|+.++
T Consensus 51 e~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 51 EARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455555444
No 123
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=37.55 E-value=55 Score=20.86 Aligned_cols=8 Identities=63% Similarity=0.962 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 038916 157 LTAVRQEL 164 (300)
Q Consensus 157 L~a~RqEL 164 (300)
|.+++|||
T Consensus 4 laaikqel 11 (34)
T 3r4h_A 4 LAAIKQEL 11 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 124
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.41 E-value=2.9e+02 Score=27.32 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=25.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
..-.+++.|..-+.++.+.|++|...|..-+..
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344567788888888888999999888755543
No 125
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.28 E-value=78 Score=24.61 Aligned_cols=19 Identities=5% Similarity=-0.046 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHhhh
Q 038916 120 DVQMREMYDKSVQLEVDLR 138 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElr 138 (300)
+.++..+-..+..+|+++.
T Consensus 36 ~~e~~~~q~~i~~lE~eL~ 54 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMA 54 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544
No 126
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=36.03 E-value=2.2e+02 Score=24.90 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=52.3
Q ss_pred hhhhhhhHHHH-HHHHHHHHH-hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHH
Q 038916 113 DSFRMDKDVQM-REMYDKSVQ-LEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAA 190 (300)
Q Consensus 113 ~~~r~e~Elq~-r~l~~k~~K-~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a 190 (300)
+..+.+.+..+ ..+++-..+ ++.|+..+...|..+.+.+-|.. +.|.-+ .++ ...|++.++.++..+...
T Consensus 125 a~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD---~~k~k~---~k~--~eeEle~A~~~fe~~~e~ 196 (256)
T 1zww_A 125 SEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFG---YKKKRQ---GKI--PDEELRQALEKFDESKEI 196 (256)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH---HHHHTT---TTS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh---ccc--cHHHHHHHHHHHHHHHHH
Confidence 44444444442 234444445 46677766666666666666443 344444 332 466777777777777666
Q ss_pred hhhhhhchhhh-hhhhHHHHHHHHHH
Q 038916 191 IEFDKKGYAEN-YEHGQVMEKKLISM 215 (300)
Q Consensus 191 ~e~Ekk~~~e~-~eQ~qaMeknlisM 215 (300)
+..+.....+. .+++..+ ..|+.+
T Consensus 197 ~~~~m~~l~~~e~e~~~~L-~~~v~a 221 (256)
T 1zww_A 197 AESSMFNLLEMDIEQVSQL-SALVQA 221 (256)
T ss_dssp HHHHHHHHHHTTHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHH-HHHHHH
Confidence 66665555544 6666666 444433
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.20 E-value=1.5e+02 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~ 227 (300)
++..++..+..+.++++.|+.++.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666654
No 128
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=35.17 E-value=78 Score=23.15 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916 170 VPALKAEIENVKQELQRARAAIEFDKKG 197 (300)
Q Consensus 170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~ 197 (300)
|=+++-|+..|++|.......++.|.+.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqra 36 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRA 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999888888888743
No 129
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.63 E-value=32 Score=24.44 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 146 ELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 146 El~ql~aE~q~L~a~RqEL 164 (300)
.+..++.++..|.....+|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555
No 130
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.43 E-value=47 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=22.5
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 197 GYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 197 ~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
-|...++.++.++..-.-+.|||++|++=|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 344556677778888888889999998755
No 131
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=34.41 E-value=1.5e+02 Score=25.52 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
..+.++.....+++.++++|..++.
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444
No 132
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.02 E-value=3e+02 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR 232 (300)
..++.+......|++.++.+-++..|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 45666666667777777777666544
No 133
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=34.01 E-value=3.9e+02 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRM 117 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~ 117 (300)
|-..|.+++.+|.+.+..++.+...+..+..
T Consensus 409 ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~ 439 (863)
T 1sjj_A 409 LLKKHEAFESDLAAHQDRVEQIAAIAQELNE 439 (863)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345667777777777777777655555544
No 134
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.84 E-value=50 Score=29.41 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENY 202 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~ 202 (300)
++..+.++++.++..+.|+.+-|+.=+|+...+.
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~ 100 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEM 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444444433
No 135
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.77 E-value=1.7e+02 Score=22.97 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038916 142 AMRSELLKVQA 152 (300)
Q Consensus 142 ~lr~El~ql~a 152 (300)
.|++++.+.++
T Consensus 27 ~lke~~~q~~~ 37 (94)
T 3jsv_C 27 KLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 136
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=33.55 E-value=1.6e+02 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHhHHh-hhhhHHHHHHHHHHHH
Q 038916 117 MDKDVQMREMYDKSVQLEVD-LRGVEAMRSELLKVQA 152 (300)
Q Consensus 117 ~e~Elq~r~l~~k~~K~EaE-lra~e~lr~El~ql~a 152 (300)
..+||.|++-++...|.=.+ -+....|..||..+..
T Consensus 34 I~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~ 70 (86)
T 1cxz_B 34 IRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSR 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36899999999988888877 4444555555544444
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.55 E-value=1.6e+02 Score=22.44 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH----h-hcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 141 EAMRSELLKVQADIKELTAVRQELT----D-LQQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~RqEL~----d-~qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
..+..|+.++-.|..+|...+-.|. | ..+|..|..|-+.++.||...+++.+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555554 1 35677777777888888877766654
No 138
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.44 E-value=3.8e+02 Score=26.76 Aligned_cols=72 Identities=11% Similarity=0.235 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916 119 KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKE-LTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEF 193 (300)
Q Consensus 119 ~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~-L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~ 193 (300)
....++.+++...+-.+.....+.+..++ -.|+.+ +.-++.-+. .+++|..|+.-|+.++-+++++-.+|..
T Consensus 84 s~~y~~~~~~~lk~~~~q~~dndn~~~e~---S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 84 SNRVIVETINILKPGLEGAQQLDENYGHV---STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447777777777777766666655542 222222 222222222 3477888888888888888887766653
No 139
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.17 E-value=2e+02 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038916 209 EKKLISMARELEKLRAEIA 227 (300)
Q Consensus 209 eknlisMarEvekLRael~ 227 (300)
+.+++-++++.+-|-+-|.
T Consensus 91 ~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhchhhhhHhh
Confidence 3445555666666666554
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=32.78 E-value=74 Score=30.93 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYE--HGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e--Q~qaMeknlisMarEvekLRael~ 227 (300)
.+...+..+|++|.+.++.+|....-.-++++ ....+...+..+..+++++.....
T Consensus 168 ~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~ 225 (476)
T 3gee_A 168 DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQ 225 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778999999999999999986644334444 345667778888888888876543
No 141
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=32.66 E-value=1.8e+02 Score=22.92 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=5.5
Q ss_pred HhHHhhhhhHHHHHH
Q 038916 132 QLEVDLRGVEAMRSE 146 (300)
Q Consensus 132 K~EaElra~e~lr~E 146 (300)
|++.+...++.++.|
T Consensus 48 k~~eq~~~le~lk~e 62 (107)
T 2no2_A 48 KTQEQLEVLESLKQE 62 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 142
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.47 E-value=2.7e+02 Score=26.68 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 203 EHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 203 eQ~qaMeknlisMarEvekLRael 226 (300)
++++.+.++|..+..++..+-++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 71 ARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 143
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=32.47 E-value=87 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLI 213 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknli 213 (300)
.+..-|..|++++..+-..++||+.+ ..-.|+.++++.++
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA--~lRD~I~~L~~~l~ 60 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAA--QIRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHT--THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHH--HHHHHHHHHHHHHh
Confidence 45667889999999999999999854 33456666666544
No 144
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=31.53 E-value=1.2e+02 Score=22.84 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh
Q 038916 92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV 140 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~ 140 (300)
-.|...|...+.||-+|+.+++++|+-=.= ..+=..|||.+++..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiK----YtelnKKLe~~~~~~ 50 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEK----YVDITKKLEDQNLNL 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 346677888999999999999999875221 223345777776633
No 145
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.39 E-value=3.9e+02 Score=26.34 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh---hcccHHHHHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTD---LQQVPALKAEIENVKQELQRA 187 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d---~qQv~al~aEl~~lRqEl~r~ 187 (300)
+..+.....+.|..+..++ ..+.+...++.++...-+|+.+ ..+|..|...|+.+++.|+..
T Consensus 123 i~~Iq~slk~~Q~Qi~en~---n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDND---IILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchh---hHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333322 2233344444444443344432 134555555555555554443
No 146
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=30.70 E-value=67 Score=23.49 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 038916 93 ALKQELEVAQYELQRM 108 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L 108 (300)
.++|+|++.+--||.|
T Consensus 6 efkqrlaaiktrlqal 21 (73)
T 2a3d_A 6 EFKQRLAAIKTRLQAL 21 (73)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555555544444
No 147
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.27 E-value=3.3e+02 Score=27.40 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHh-----hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELTD-----LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS 214 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~d-----~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis 214 (300)
+...+.|+.++.++++++.+.+--++. .+.+.++.+|-+.++.-+....+- +.|+|+..+..++++.--+-+..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K-iAE~KrK~dE~~aIKDAVkfTAd 436 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK-IAEEKRKQDELKATKDAINFTTE 436 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHhhhHHHHHHHHHHHHHH
Confidence 555556666666666644444333331 122334444444555544444444 44555555555555544443333
Q ss_pred H
Q 038916 215 M 215 (300)
Q Consensus 215 M 215 (300)
+
T Consensus 437 F 437 (602)
T 1cii_A 437 F 437 (602)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.00 E-value=1.6e+02 Score=21.26 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~e 230 (300)
.+++-+.+|..+++-|+.|..+|+..+
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555566667777777777776543
No 149
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.86 E-value=2.5e+02 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 204 HGQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n~ek 231 (300)
+....+.++.+...+++.+++.|..++.
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~ 143 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEI 143 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544443
No 150
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.46 E-value=14 Score=22.75 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 038916 92 VALKQELEVAQYEL 105 (300)
Q Consensus 92 ~aLrqeLaa~~~El 105 (300)
.+|+|.+++.+|-|
T Consensus 10 daleqkiaalkqki 23 (28)
T 3ra3_A 10 DALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 151
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.42 E-value=49 Score=27.01 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHH
Q 038916 169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAR 217 (300)
Q Consensus 169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMar 217 (300)
+-..|..+|..++.+|..+++++.++.+..-++ ++++-.+--+..|
T Consensus 8 ~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~e---L~~LI~KWr~asq 53 (122)
T 3viq_A 8 RRLKLEKEVRNLQEQLITAETARKVEAKNEDKD---LQTLIQKWKNAAQ 53 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHH
Confidence 345678888899999999999999998766443 3344444433333
No 152
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.03 E-value=2e+02 Score=22.18 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
.+.++|..++.|+.+.-..=+.=-+-+++.--|.-....++.|+...+.....-|+.
T Consensus 36 ~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 36 VVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444333222222234444444445555555555555555554443
No 153
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.98 E-value=1.4e+02 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
+..+.+..+..++..+.+|+++|+.+++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666777777777777766544
No 154
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.95 E-value=1.6e+02 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 204 HGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n 228 (300)
.+..+++.|..--.||.+||.+|+.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888888888764
No 155
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.50 E-value=1.3e+02 Score=23.21 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 188 RAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 188 R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael 226 (300)
|.|++--+.-|....+++..++.++.+++.|.+.||.=+
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777788888888888888887644
No 156
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=28.31 E-value=2.8e+02 Score=23.61 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 038916 87 LAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTD 166 (300)
Q Consensus 87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d 166 (300)
|-..|.+|+.+|.+.+..++.+......+....- .+ ...+..-.++|......++.+...|..-
T Consensus 53 llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~------~~--------~~~I~~r~~~l~~~W~~L~~~~~~R~~~-- 116 (250)
T 1quu_A 53 LLRKHEAFESDLAAHQDRVEQIAAIAQELNELDY------HD--------AVNVNDRCQKICDQWDRLGTLTQKRREA-- 116 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------TT--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------cc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4456677778888877777777655554443310 00 0112233455666666666666655443
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHhhh---hhh------chhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 167 LQQVPALKAEIENVKQELQRARAAIEF---DKK------GYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 167 ~qQv~al~aEl~~lRqEl~r~R~a~e~---Ekk------~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
+...-.+...++.++.++.+....++. ++. .+..+++.++++.++......+++.+..
T Consensus 117 L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~ 183 (250)
T 1quu_A 117 LERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADG 183 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133334445555665555554444442 111 1345788889999888888855555543
No 157
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=28.00 E-value=3.3e+02 Score=24.38 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHH----------HHHHHHHHHHHHHH
Q 038916 91 HVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSE----------LLKVQADIKELTAV 160 (300)
Q Consensus 91 h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~E----------l~ql~aE~q~L~a~ 160 (300)
|.+|+.||.+.+.-|+.+......+-.+.=-....+.++...|...-..+..+-.. +.|--.|+..+.+-
T Consensus 50 h~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~W 129 (283)
T 3pe0_A 50 YSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQ 129 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhH-------------hhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 161 RQELT-------------DLQQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 161 RqEL~-------------d~qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
-..+. |...+..|....+.+.++|......+.
T Consensus 130 l~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~~le~~l~~~~~~i~ 174 (283)
T 3pe0_A 130 LQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLS 174 (283)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.80 E-value=1.6e+02 Score=21.04 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=26.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 038916 85 QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMR 124 (300)
Q Consensus 85 qRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r 124 (300)
..|.++--+|++++...++|...|... +|.|.+.|
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~-----lEeEqkAR 40 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKS-----LEEEQRAR 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 467888999999999999999988743 34555444
No 159
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=27.77 E-value=2.6e+02 Score=23.05 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc--
Q 038916 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG-- 197 (300)
Q Consensus 120 Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~-- 197 (300)
|-.+.++..|+-.+|.|+- -+|+=+-.+.+.++++.-.-.+ -+..|..++..+|+=.-.=|.++++=...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~---~~~~~ig~L~~~l~~~aN~T~~-----aL~~L~~q~Tslr~~~LQNRraLD~Lla~qG 91 (125)
T 4g2k_A 20 EDKIEEILSKIYHIENEIA---RIKKLIGNLVSRLRRLANQTAK-----SLELLLRVTTEERTFSLINRHAIDFLLTRWG 91 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3346677777777776654 4555566666666666544433 37778888888888777777887762211
Q ss_pred -h---------hhhhhhhHHHHHHHHHHHHHHHH
Q 038916 198 -Y---------AENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 198 -~---------~e~~eQ~qaMeknlisMarEvek 221 (300)
- ...=++.+.+.+.|.-|++++||
T Consensus 92 G~C~~l~e~CCfyind~g~~I~d~Iqkikkd~qK 125 (125)
T 4g2k_A 92 GTCKVLGPDCSIGIEDLSRNISEQIDQIKKDEQK 125 (125)
T ss_dssp CHHHHHCGGGGCCCCCCHHHHHHHHHHHHHHTTC
T ss_pred CcHHHhcccceeeccccchHHHHHHHHHHHHhcC
Confidence 0 00113456777888878777764
No 160
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.61 E-value=23 Score=21.72 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=11.3
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 038916 86 RLAATHVALKQELEVAQYELQ 106 (300)
Q Consensus 86 RLa~~h~aLrqeLaa~~~Elq 106 (300)
||-.....|+||+++..-||-
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 334444455666666666653
No 161
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=27.36 E-value=1e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916 147 LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R 188 (300)
++|+++|..++.+.=+||+ .....+++|++.|+.-|....
T Consensus 32 ~~~~~a~~~s~~s~~~dl~--~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLT--KSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHcc
Confidence 4566666666666666664 223446677777776666544
No 162
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.25 E-value=4.6e+02 Score=25.84 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHH--------HHHHHHH
Q 038916 112 ADSFRMDKDVQMREMYDKSVQL-EVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALK--------AEIENVK 181 (300)
Q Consensus 112 i~~~r~e~Elq~r~l~~k~~K~-EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~--------aEl~~lR 181 (300)
+.-+|..-|.-...+..+.... ..++..+-.+-++..++..+++.|.+.|.+++ ...++-... .+.+.+.
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~ 122 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLR 122 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHH
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916 182 QELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222 (300)
Q Consensus 182 qEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL 222 (300)
.|...... +++++++.+..+..+++.+
T Consensus 123 ~~~~~l~~--------------~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 123 ARGREIRK--------------QLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 163
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.98 E-value=2.6e+02 Score=22.83 Aligned_cols=95 Identities=25% Similarity=0.280 Sum_probs=39.5
Q ss_pred HHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHH
Q 038916 128 DKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV 207 (300)
Q Consensus 128 ~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qa 207 (300)
.+.-.||++++.+...-++ +-.-+-+..+++.+.| ..-.++.++|+..-..|.. ..-+-|=|+.|...+-+-+.
T Consensus 9 s~l~~LEaeyq~L~~kE~q--rynqeka~AE~A~~~L---~~~~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~ 82 (119)
T 2avr_X 9 GELQALDAEYQNLANQEEA--RFNEERAQADAARQAL---AQNEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHH
Confidence 3334455555533332221 2223333444444455 3334444444444443333 22222333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 208 MEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 208 MeknlisMarEvekLRael~n~ek 231 (300)
.-+.|+ .||.+...-|.|.++
T Consensus 83 ~~~~Ld---~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 83 ALKKLE---AEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHH
Confidence 444333 344455555555554
No 164
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=26.93 E-value=6.1e+02 Score=27.11 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHH
Q 038916 87 LAATHVALKQEL-EVAQYELQRMV 109 (300)
Q Consensus 87 La~~h~aLrqeL-aa~~~Elq~L~ 109 (300)
-++.|.+.+.|- +...-|.|+|.
T Consensus 671 a~Ar~~A~~~eQea~g~Lerqki~ 694 (861)
T 2zuo_A 671 AAAKHEAQRLEQEARGRLERQKIL 694 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhhhHHHHHHH
Confidence 344455544442 33333555554
No 165
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.57 E-value=4.8e+02 Score=25.77 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYE 203 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e 203 (300)
++++++..++.+.| .+..++.+++++..++...-..+. +...+..++++...++ +
T Consensus 30 ~~~~~~~~ld~~~r---~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~---------------------~ 85 (485)
T 3qne_A 30 ELVDEIIAEYKEWV---KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLS---------------------N 85 (485)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------------------H
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------H
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 038916 204 HGQVMEKKLISMARELEKL 222 (300)
Q Consensus 204 Q~qaMeknlisMarEvekL 222 (300)
+++++|+.+..+..+++.+
T Consensus 86 ~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 86 EKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 166
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.55 E-value=2.5e+02 Score=27.78 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael 226 (300)
++.+.++|..+..++..+-+++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 167
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.09 E-value=2.1e+02 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
+..+..++.++..+++.+..+..||.
T Consensus 22 ~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 22 LQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777776
No 168
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.78 E-value=3.4e+02 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916 200 ENYEHGQVMEKKLISMARELEKLRAEI 226 (300)
Q Consensus 200 e~~eQ~qaMeknlisMarEvekLRael 226 (300)
+..++++.+.++|..+..++..+-+++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444444
No 169
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.58 E-value=2.5e+02 Score=22.22 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhHhhcc-cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 160 VRQELTDLQQ-VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 160 ~RqEL~d~qQ-v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
+..+|+-.|. +..-.++-..--+=.+-++..++-||....+...+++.++-+|..+.++++.++
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 170
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.42 E-value=76 Score=24.87 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 038916 218 ELEKLRAEIA 227 (300)
Q Consensus 218 EvekLRael~ 227 (300)
||-+||.+|+
T Consensus 76 EI~rLr~eLe 85 (92)
T 3vp9_A 76 EIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5556666664
No 171
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.29 E-value=26 Score=27.67 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=16.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e 192 (300)
-++..+..||+.+..+|...++.|+
T Consensus 63 Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 63 RKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp HHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666664
No 172
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.29 E-value=2.3e+02 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 122 QMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL 164 (300)
Q Consensus 122 q~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL 164 (300)
.+..+++.+.-|.-| ++.+|.+-..+..+++.+..-|..|
T Consensus 14 KIq~avdtI~lLqmE---ieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 14 KVQQAIDTITLLQME---IEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444444444422 4456666666666666655555555
No 173
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=25.06 E-value=1.2e+02 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=16.6
Q ss_pred HHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916 189 AAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223 (300)
Q Consensus 189 ~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR 223 (300)
.+++.|.+-+.. ..+.=+|+|..-+.++|||+
T Consensus 41 ~T~E~E~q~~~~---kk~~Aekql~~Ake~~eKlk 72 (136)
T 3ter_A 41 RTCENEMAFLEK---QRQDCFKEMKEAIEMVDRLQ 72 (136)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH---ccccHHHHHHHHHHHHHHHH
Confidence 355555543332 33444566666666666665
No 174
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.85 E-value=2.7e+02 Score=22.25 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916 173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae 225 (300)
|-..++.+..|--++|.. ....-.++.+++.++.-++.|=+.|+-+
T Consensus 42 LE~~~s~le~e~~rlr~~-------~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLE-------SKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------hccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443 0111245555555555555555555543
No 175
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.63 E-value=1.4e+02 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRS 145 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~ 145 (300)
+-.+.+.+.+++++|..+...+.
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444433
No 176
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.62 E-value=1.2e+02 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 205 GQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n 228 (300)
+..+++.-..+..||+.|+.++..
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555443
No 177
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.60 E-value=5.5e+02 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHHHHHhhhhhccchhhh
Q 038916 64 AIIEEHLAAQHQDIQGLLADNQRLAAT 90 (300)
Q Consensus 64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~ 90 (300)
.+|++-|......-..|+--++.|-..
T Consensus 459 ~vl~~fl~~~~~~~~~ilq~d~~l~~~ 485 (592)
T 1f5n_A 459 EILQTYLKSKESMTDAILQTDQTLTEK 485 (592)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555555555555443
No 178
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.22 E-value=1.2e+02 Score=22.54 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ek 231 (300)
+.+++|.|.+|..|.+.+-..+...++
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655555
No 179
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=24.09 E-value=2.6e+02 Score=21.86 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916 125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R 188 (300)
.+++++-.|...|+..+ |.+.+..+++.|.....+..+..++..++++++...
T Consensus 7 ~I~d~A~eL~~~I~~se-----------Ey~~~k~A~~~l~~D~ea~~li~~F~~~q~~~q~~q 59 (122)
T 2oeq_A 7 PLHALARQLEQAIRASE-----------PFQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEKQ 59 (122)
T ss_dssp TTHHHHHHHHHHHHHSH-----------HHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCH-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666443 334455555555544556666666666666666544
No 180
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.82 E-value=3e+02 Score=22.57 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchh-hhhhhhHHHHHHHHHHHHHHHH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYA-ENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~-e~~eQ~qaMeknlisMarEvek 221 (300)
.|.++|..++.+++..-..|. +...-. +....+.+.=....+|.|++|+
T Consensus 47 ~Ll~~LsaIk~ry~~L~~q~~-~iaaeQke~~d~ir~tL~~tm~miQ~LQ~ 96 (123)
T 4aj5_K 47 TLLKELSVIKSRYQTLYARFK-PVAVEQKESKSRICATVKKTMNMIQKLQK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666555 221111 3333444444444455555544
No 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.81 E-value=5.4e+02 Score=26.35 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916 141 EAMRSELLKVQADIKELTAVR-QELTDLQQVPALKAEIENVKQELQRAR 188 (300)
Q Consensus 141 e~lr~El~ql~aE~q~L~a~R-qEL~d~qQv~al~aEl~~lRqEl~r~R 188 (300)
..+++|+..++.+++.+...= .|...+.++..++.+++.++.++..+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (854)
T 1qvr_A 433 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAE 481 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555555555554443221 111123455566666666655555433
No 182
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.71 E-value=1.9e+02 Score=24.84 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSE 230 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~e 230 (300)
...+.++.+...+++.++..+.+..
T Consensus 108 ~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 108 QQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 3445566666667777777776543
No 183
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=23.62 E-value=1.4e+02 Score=27.28 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 038916 212 LISMARELEKLRAEIANSEK 231 (300)
Q Consensus 212 lisMarEvekLRael~n~ek 231 (300)
++....+++.++++|+.++.
T Consensus 114 ~~~a~~~~~~a~a~l~~a~~ 133 (369)
T 1vf7_A 114 YADANAAYLQSKAAVEQARI 133 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 184
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.39 E-value=2.5e+02 Score=21.47 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 038916 175 AEIENVKQELQRARA 189 (300)
Q Consensus 175 aEl~~lRqEl~r~R~ 189 (300)
++|+.|..|+..++.
T Consensus 57 ~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 57 KKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444433333
No 185
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.36 E-value=2.4e+02 Score=21.23 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916 147 LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK 221 (300)
Q Consensus 147 l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek 221 (300)
+.++.-.-..+.....|+ +++....+..+..|.||...-..+..||..-..++.-...+-..|+.-..+++.
T Consensus 6 LL~~~~~eeEm~~~eeel---~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~ 77 (89)
T 3bas_A 6 LLSIARQEEEMKEQLKQM---DKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLEN 77 (89)
T ss_dssp ----CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 186
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=23.19 E-value=26 Score=23.08 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=4.4
Q ss_pred HHhhhhhHH
Q 038916 134 EVDLRGVEA 142 (300)
Q Consensus 134 EaElra~e~ 142 (300)
-+|+|+|++
T Consensus 23 naelramea 31 (40)
T 1abz_A 23 NAELRAMEA 31 (40)
T ss_dssp SSHHHHHHH
T ss_pred hHHHHHHHH
Confidence 345555544
No 187
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.98 E-value=2.5e+02 Score=21.36 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHhhhhhcc
Q 038916 66 IEEHLAAQHQDIQGLLADNQ 85 (300)
Q Consensus 66 lEe~la~Q~~Ei~~L~~dNq 85 (300)
.|.....-.++|.+.+..-.
T Consensus 6 YE~df~~~~~~i~~~l~~~~ 25 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAP 25 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46666666777776665433
No 188
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.96 E-value=67 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhh
Q 038916 168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAEN 201 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~ 201 (300)
+++..+.+++..|+.|+.......+..+|.+.+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4566677777777777777666665555544333
No 189
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.93 E-value=3.1e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=10.7
Q ss_pred HHHHhhhhh--ccchhhhHHHH
Q 038916 75 QDIQGLLAD--NQRLAATHVAL 94 (300)
Q Consensus 75 ~Ei~~L~~d--NqRLa~~h~aL 94 (300)
.-|+.|... |..|..+..++
T Consensus 39 ~km~ei~~~~~~~~l~~~r~aV 60 (138)
T 3hnw_A 39 NKITEFNKEESYRRMSAELRTD 60 (138)
T ss_dssp HHHHHHTTCHHHHTSCHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHH
Confidence 334555533 66666665544
No 190
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=22.59 E-value=1e+02 Score=23.96 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=34.0
Q ss_pred HHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916 187 ARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA 227 (300)
Q Consensus 187 ~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~ 227 (300)
.|.-|++=|.+-.++++++.++.+|+..=--|+.+|-.+|+
T Consensus 5 LrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 5 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45678888888999999999999999999999999988885
No 191
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.41 E-value=1.2e+02 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 201 NYEHGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 201 ~~eQ~qaMeknlisMarEvekLRael~n 228 (300)
-++|...+|.+...+..|+++|+.|++-
T Consensus 46 r~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 46 RVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666653
No 192
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.37 E-value=1.9e+02 Score=19.71 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 038916 173 LKAEIENVKQELQRARAAIE 192 (300)
Q Consensus 173 l~aEl~~lRqEl~r~R~a~e 192 (300)
+..+|..++.+++....+++
T Consensus 38 ~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 38 IFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 193
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.36 E-value=1.3e+02 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 205 GQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 205 ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
++.++.....|..|++.|+.+...-+.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555444433333
No 194
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=22.22 E-value=1.2e+02 Score=19.47 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038916 92 VALKQELEVAQYELQRMVH 110 (300)
Q Consensus 92 ~aLrqeLaa~~~Elq~L~~ 110 (300)
.+++++-++...|||.+..
T Consensus 5 aaikeeqaaieeeiqaike 23 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555556555543
No 195
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=22.22 E-value=1.3e+02 Score=29.42 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916 171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224 (300)
Q Consensus 171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa 224 (300)
....++++.+.++|...|+.|..-..-+.-+-+=...||..|..+..+++.+|.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (500)
T 3nbx_X 446 GEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQ 499 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCTTSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCeeeecHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999999999988888888999999999999999998763
No 196
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.88 E-value=1.1e+02 Score=22.63 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229 (300)
Q Consensus 166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ 229 (300)
+..+...++.|+..++.|+...=++=+|-| =--+...++-|..||+++..+|..+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAK---------WaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAK---------WTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHH---------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhcc
No 197
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.85 E-value=80 Score=29.64 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--HhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHH
Q 038916 88 AATHVALKQELEVAQYELQRM--VHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAM 143 (300)
Q Consensus 88 a~~h~aLrqeLaa~~~Elq~L--~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~l 143 (300)
..|||.++.+|+.....|+.+ ..+-.++++ -+..+..+-+|+.+||.++.....+
T Consensus 1 ~~~~~~~~~~le~~~~~ik~~~~~~~~~~I~~-Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 1 SSTHVNAQKEIENRYKEVKIRIESTVAGSLRS-MKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp ------CHHHHHHHTHHHHHHHHTTTHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 198
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.55 E-value=1.4e+02 Score=20.87 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 038916 77 IQGLLADNQRLAATHVALKQELEVAQYELQRMVHYAD 113 (300)
Q Consensus 77 i~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~ 113 (300)
|.+|-.-|-.|+.-...|+.--.-..|||.||+..+.
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5566667778877777888777778888888876543
No 199
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=21.54 E-value=2.6e+02 Score=20.90 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHh
Q 038916 140 VEAMRSELLKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAI 191 (300)
Q Consensus 140 ~e~lr~El~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~ 191 (300)
++.++.||.++.+-+-+...--=+|+ +-++|+.+.++.-..-+||..++..+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L 61 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKST 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666663333322222333 34667777777666666666655543
No 200
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.40 E-value=3e+02 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=12.7
Q ss_pred cccHHHHHHHHHHHHHHH
Q 038916 168 QQVPALKAEIENVKQELQ 185 (300)
Q Consensus 168 qQv~al~aEl~~lRqEl~ 185 (300)
+++..+..-|+.|||||-
T Consensus 78 ~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 78 DQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456667777777777764
No 201
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.32 E-value=1.4e+02 Score=20.90 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=16.4
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916 80 LLADNQRLAATHVALKQELEVAQYELQRMVHYA 112 (300)
Q Consensus 80 L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i 112 (300)
|-..|..|..-...|-.-|..+.++|..|...+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544333
No 202
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.29 E-value=4.2e+02 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916 206 QVMEKKLISMARELEKLRAEIANSEKRARA 235 (300)
Q Consensus 206 qaMeknlisMarEvekLRael~n~ekR~ra 235 (300)
.++.+++..++.+|..|-+++...+.....
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655555543
No 203
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.18 E-value=3.1e+02 Score=21.61 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038916 215 MARELEKL 222 (300)
Q Consensus 215 MarEvekL 222 (300)
+.+|||-|
T Consensus 52 ie~ElEeL 59 (97)
T 2eqb_B 52 LNKEVEDL 59 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 204
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.14 E-value=1.1e+02 Score=21.48 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 038916 93 ALKQELEVAQYELQRMVHYADSFRMDKDVQ 122 (300)
Q Consensus 93 aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq 122 (300)
.++++++.+.+|-|.|. --++++|.|+-
T Consensus 18 ~~r~e~~~q~~eYq~Ll--niK~~Le~EIa 45 (59)
T 1gk6_A 18 HLENEVARLKKLVGDLL--NVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhHHHHH
Confidence 45566666666666665 34445555553
No 205
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.12 E-value=3e+02 Score=21.57 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIK 155 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q 155 (300)
+-.|.+.+.+.++++.-+.-|++.+.=-+.|..
T Consensus 25 id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 25 IDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 206
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.92 E-value=6.1e+02 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEKRAR 234 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ekR~r 234 (300)
..+.+|.-+..=+++++..|.+-++...
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655443
No 207
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.85 E-value=1.4e+02 Score=26.51 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916 172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKR 232 (300)
Q Consensus 172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR 232 (300)
..+++++..+.++.|.+.-++.. ...-++....+.++.....+++.+++.+..++..
T Consensus 87 ~a~~~~~~a~~~~~r~~~L~~~~----~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 87 QAEAELKLARVTYSRQQRLAQTQ----AVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQAS 143 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTS----SSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655544332 1112333444555666666666666666555443
No 208
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.72 E-value=2.6e+02 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916 207 VMEKKLISMARELEKLRAEIANSEK 231 (300)
Q Consensus 207 aMeknlisMarEvekLRael~n~ek 231 (300)
.+|.+|+..-..+...-..|+.++|
T Consensus 52 ~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 52 GTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 209
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.68 E-value=1.6e+02 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916 204 HGQVMEKKLISMARELEKLRAEIAN 228 (300)
Q Consensus 204 Q~qaMeknlisMarEvekLRael~n 228 (300)
+++.+++.-..+..+|+.|+.|+.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 210
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=20.34 E-value=6.9e+02 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 038916 142 AMRSELLKVQADIKELTAVRQELT 165 (300)
Q Consensus 142 ~lr~El~ql~aE~q~L~a~RqEL~ 165 (300)
.++++...+...+..|.-.|+||.
T Consensus 56 ~~~~~~~~l~~~~~~l~~~R~~~~ 79 (575)
T 1bf5_A 56 DQKQEQLLLKKMYLMLDNKRKEVV 79 (575)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666777777777774
No 211
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.19 E-value=3e+02 Score=21.07 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHH
Q 038916 123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQR 186 (300)
Q Consensus 123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r 186 (300)
+-..++++-.+..+|..++..-++|..++..+ |+.......++.+|+.+-.|+..
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~---------L~~~~~~~~~~~~l~~l~~~i~~ 61 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI---------LASPNPDEKTKEELEELMSDIKK 61 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcCCccHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444422 22222344455555555555444
Done!