BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038918
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 207 KNRRERISERLKILQELVPN--GSKVDLVTMLEKAISYVKFLQLQVKVLATD 256
           + RR+ I +    L++ VP+  G K     +L+KA  Y+++++ +V  L  D
Sbjct: 13  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQD 64


>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 199 KDPQSIAAKNRRERISERLKILQELVPNGSKVDLV----TMLEKAISYVKFLQ 247
           KD  ++  + RR  I++R+K L  L+P  +  D+     T+L+ ++ Y++ LQ
Sbjct: 28  KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 80


>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
 pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt3049 From B.
           Thetaiotaomicron
          Length = 781

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 70  HFMHANASNLLSFEQNETKDDEYSMWEGNFNQINQKYSSDHRLMEDFNCFDTASNYGF-- 127
           H+  +N+  L +F ++  +D E   W G F      Y+ D +L+  FN ++     GF  
Sbjct: 484 HYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDXQLVRKFNQYE-----GFCS 538

Query: 128 -MINNSARDCHGD-WLYT 143
             IN   R   G  WL T
Sbjct: 539 NTINQIYRSSKGQXWLAT 556


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,336,136
Number of Sequences: 62578
Number of extensions: 252898
Number of successful extensions: 477
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 5
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)