Query 038918
Match_columns 291
No_of_seqs 180 out of 773
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:06:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.8E-15 9.5E-20 116.2 5.9 58 199-256 7-65 (82)
2 4ati_A MITF, microphthalmia-as 99.6 5.5E-15 1.9E-19 121.7 7.3 63 194-256 23-89 (118)
3 4h10_B Circadian locomoter out 99.5 2.2E-15 7.5E-20 115.0 3.8 58 197-254 7-65 (71)
4 1an4_A Protein (upstream stimu 99.5 5.9E-15 2E-19 109.0 2.7 55 197-251 4-64 (65)
5 1a0a_A BHLH, protein (phosphat 99.5 2.8E-15 9.6E-20 111.4 0.5 54 198-251 2-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.4 1.3E-14 4.3E-19 111.1 -0.0 52 197-248 8-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.4 3.4E-13 1.2E-17 103.9 6.2 56 200-255 4-61 (83)
8 1hlo_A Protein (transcription 99.4 3.1E-13 1E-17 103.8 5.5 58 199-256 13-72 (80)
9 3u5v_A Protein MAX, transcript 99.4 6.9E-13 2.4E-17 102.1 5.5 59 198-256 5-67 (76)
10 1nkp_A C-MYC, MYC proto-oncoge 99.3 7.9E-13 2.7E-17 103.9 5.8 57 200-256 8-67 (88)
11 1nlw_A MAD protein, MAX dimeri 99.2 3.3E-11 1.1E-15 93.3 6.7 57 200-256 3-62 (80)
12 4f3l_A Mclock, circadian locom 99.0 3.7E-10 1.3E-14 105.1 6.0 56 195-250 9-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.2E-09 4.1E-14 82.4 4.9 51 200-250 14-66 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 6.8E-10 2.3E-14 104.7 2.5 55 195-249 10-68 (387)
15 2ql2_B Neurod1, neurogenic dif 98.8 3.7E-09 1.3E-13 77.8 5.6 51 201-251 5-58 (60)
16 4ath_A MITF, microphthalmia-as 98.5 1.8E-07 6E-12 73.4 6.1 46 210-255 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.3 2.3E-07 7.8E-12 70.4 1.8 43 206-248 22-67 (68)
18 4aya_A DNA-binding protein inh 97.8 3.2E-05 1.1E-09 62.2 6.7 55 206-260 33-90 (97)
19 3muj_A Transcription factor CO 46.6 25 0.00087 29.6 4.8 34 213-246 96-133 (138)
20 2wt7_A Proto-oncogene protein 28.1 72 0.0025 22.7 4.1 38 206-256 1-38 (63)
21 3fx7_A Putative uncharacterize 27.4 48 0.0017 26.2 3.3 24 235-258 64-87 (94)
22 1m2x_A Class B carbapenemase B 26.0 27 0.00094 28.8 1.8 32 221-252 190-221 (223)
23 1a7t_A Metallo-beta-lactamase; 25.0 42 0.0014 27.9 2.7 31 221-251 200-230 (232)
24 1txp_A HnRNP C, heterogeneous 23.7 31 0.0011 21.8 1.2 15 268-282 7-21 (28)
25 2v4h_A NF-kappa-B essential mo 21.3 70 0.0024 26.0 3.2 19 204-222 79-97 (110)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.56 E-value=2.8e-15 Score=116.16 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=54.8
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCCC-CCCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 199 KDPQSIAAKNRRERISERLKILQELVPNG-SKVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 199 ~~~H~~aERrRRerIner~~~Lr~LVP~~-~K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
+.+|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999997 79999999999999999999999999854
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=5.5e-15 Score=121.75 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=51.2
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHHHHhccCCCCC----CCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 194 TSAPPKDPQSIAAKNRRERISERLKILQELVPNGS----KVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 194 k~~~~~~~H~~aERrRRerIner~~~Lr~LVP~~~----K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
+...++.+|+++||+||++||++|.+|+.|||++. |++|++||++||+||++||.+++.|...
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567889999999999999999999999999874 6789999999999999999999999853
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.2e-15 Score=115.01 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=53.4
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhccCCCC-CCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 038918 197 PPKDPQSIAAKNRRERISERLKILQELVPNG-SKVDLVTMLEKAISYVKFLQLQVKVLA 254 (291)
Q Consensus 197 ~~~~~H~~aERrRRerIner~~~Lr~LVP~~-~K~DkASIL~eAI~YIK~LQ~qVq~Le 254 (291)
..+.+|+++||+||++||++|.+|+.|||++ .|+||++||+.||+||+.||.++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456899999999999999999999999975 599999999999999999999998876
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=5.9e-15 Score=109.03 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhccCCCCC------CCCHhHHHHHHHHHHHHHHHHHH
Q 038918 197 PPKDPQSIAAKNRRERISERLKILQELVPNGS------KVDLVTMLEKAISYVKFLQLQVK 251 (291)
Q Consensus 197 ~~~~~H~~aERrRRerIner~~~Lr~LVP~~~------K~DkASIL~eAI~YIK~LQ~qVq 251 (291)
..+..|+++||+||++||+.|..|+.|||.+. |+||++||.+||+||+.||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999875 67999999999999999998753
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=2.8e-15 Score=111.45 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=48.9
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCCC-------CCCCHhHHHHHHHHHHHHHHHHHH
Q 038918 198 PKDPQSIAAKNRRERISERLKILQELVPNG-------SKVDLVTMLEKAISYVKFLQLQVK 251 (291)
Q Consensus 198 ~~~~H~~aERrRRerIner~~~Lr~LVP~~-------~K~DkASIL~eAI~YIK~LQ~qVq 251 (291)
++.+|.++||+||++||..|..|+.|||.+ .+.+||+||+.||+||+.||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999964 466799999999999999998764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=1.3e-14 Score=111.06 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=47.7
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhccCCCC----CCCCHhHHHHHHHHHHHHHHH
Q 038918 197 PPKDPQSIAAKNRRERISERLKILQELVPNG----SKVDLVTMLEKAISYVKFLQL 248 (291)
Q Consensus 197 ~~~~~H~~aERrRRerIner~~~Lr~LVP~~----~K~DkASIL~eAI~YIK~LQ~ 248 (291)
.++..|+++||+||++||+.|.+|+.|||.+ .|+||++||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999999976 699999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.39 E-value=3.4e-13 Score=103.87 Aligned_cols=56 Identities=21% Similarity=0.481 Sum_probs=52.8
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhccCCC--CCCCCHhHHHHHHHHHHHHHHHHHHHHhc
Q 038918 200 DPQSIAAKNRRERISERLKILQELVPN--GSKVDLVTMLEKAISYVKFLQLQVKVLAT 255 (291)
Q Consensus 200 ~~H~~aERrRRerIner~~~Lr~LVP~--~~K~DkASIL~eAI~YIK~LQ~qVq~Les 255 (291)
..|+..||+||..||+.|..|+.+||. +.|++|++||..||+||+.|+.+++.|+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999997 47999999999999999999999999975
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=3.1e-13 Score=103.76 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=53.9
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCCC--CCCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 199 KDPQSIAAKNRRERISERLKILQELVPNG--SKVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 199 ~~~H~~aERrRRerIner~~~Lr~LVP~~--~K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
+..|+..||+||..||+.|..|+.|||.. .|++|++||..||+||+.|+.+++.|+..
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999975 68999999999999999999999999753
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.35 E-value=6.9e-13 Score=102.05 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCC---CCCC-CHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 198 PKDPQSIAAKNRRERISERLKILQELVPN---GSKV-DLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 198 ~~~~H~~aERrRRerIner~~~Lr~LVP~---~~K~-DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
.+..|++.||+||..||+.|..|+.+||. +.|. .|+.||..||+||++||++|++++.-
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999994 4566 79999999999999999999998743
No 10
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=7.9e-13 Score=103.86 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=52.7
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhccCCCC---CCCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 200 DPQSIAAKNRRERISERLKILQELVPNG---SKVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 200 ~~H~~aERrRRerIner~~~Lr~LVP~~---~K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
..|+..||+||..||+.|..|+.+||.. .|++|++||.+||+||+.|+.+.+.|...
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999975 59999999999999999999999888753
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.18 E-value=3.3e-11 Score=93.27 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=52.4
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhccCCCC---CCCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 200 DPQSIAAKNRRERISERLKILQELVPNG---SKVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 200 ~~H~~aERrRRerIner~~~Lr~LVP~~---~K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
..|+..||+||..|++.|..|+++||.. .|++|+.||..|++||+.|+.+.+.|...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999964 57899999999999999999999988754
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=3.7e-10 Score=105.05 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=43.1
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHHHHhccCC-CCCCCCHhHHHHHHHHHHHHHHHHH
Q 038918 195 SAPPKDPQSIAAKNRRERISERLKILQELVP-NGSKVDLVTMLEKAISYVKFLQLQV 250 (291)
Q Consensus 195 ~~~~~~~H~~aERrRRerIner~~~Lr~LVP-~~~K~DkASIL~eAI~YIK~LQ~qV 250 (291)
...++.+|+++||+||++||+.|.+|+.||| ...|+||++||..||.|||.|+...
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3445678999999999999999999999999 5569999999999999999998654
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.90 E-value=1.2e-09 Score=82.39 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=46.9
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhccCCCC--CCCCHhHHHHHHHHHHHHHHHHH
Q 038918 200 DPQSIAAKNRRERISERLKILQELVPNG--SKVDLVTMLEKAISYVKFLQLQV 250 (291)
Q Consensus 200 ~~H~~aERrRRerIner~~~Lr~LVP~~--~K~DkASIL~eAI~YIK~LQ~qV 250 (291)
..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999963 58899999999999999999865
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=6.8e-10 Score=104.72 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=49.3
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHHHHhccCC----CCCCCCHhHHHHHHHHHHHHHHHH
Q 038918 195 SAPPKDPQSIAAKNRRERISERLKILQELVP----NGSKVDLVTMLEKAISYVKFLQLQ 249 (291)
Q Consensus 195 ~~~~~~~H~~aERrRRerIner~~~Lr~LVP----~~~K~DkASIL~eAI~YIK~LQ~q 249 (291)
...++.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3445778999999999999999999999999 678999999999999999999843
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.84 E-value=3.7e-09 Score=77.85 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHHHHHHhccCCCC---CCCCHhHHHHHHHHHHHHHHHHHH
Q 038918 201 PQSIAAKNRRERISERLKILQELVPNG---SKVDLVTMLEKAISYVKFLQLQVK 251 (291)
Q Consensus 201 ~H~~aERrRRerIner~~~Lr~LVP~~---~K~DkASIL~eAI~YIK~LQ~qVq 251 (291)
.|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999964 488999999999999999998764
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.49 E-value=1.8e-07 Score=73.44 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccCCCCC----CCCHhHHHHHHHHHHHHHHHHHHHHhc
Q 038918 210 RERISERLKILQELVPNGS----KVDLVTMLEKAISYVKFLQLQVKVLAT 255 (291)
Q Consensus 210 RerIner~~~Lr~LVP~~~----K~DkASIL~eAI~YIK~LQ~qVq~Les 255 (291)
|..||++|.+|..|||.+. |.+|++||..||+||++||+.++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999753 578999999999999999997776653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.27 E-value=2.3e-07 Score=70.38 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCC---CCCCHhHHHHHHHHHHHHHHH
Q 038918 206 AKNRRERISERLKILQELVPNG---SKVDLVTMLEKAISYVKFLQL 248 (291)
Q Consensus 206 ERrRRerIner~~~Lr~LVP~~---~K~DkASIL~eAI~YIK~LQ~ 248 (291)
||+|+..||+-|..||.+||.. .|++|..+|..||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 5568889999999999999964 588999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.84 E-value=3.2e-05 Score=62.16 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhccCCC---CCCCCHhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 038918 206 AKNRRERISERLKILQELVPN---GSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWP 260 (291)
Q Consensus 206 ERrRRerIner~~~Lr~LVP~---~~K~DkASIL~eAI~YIK~LQ~qVq~Les~~~~p 260 (291)
||.|=..||+-|..||.+||. ..|+.|..+|.-||+||..|+..++.-.....+-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~ 90 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLV 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 567778899999999999995 3488999999999999999999998877665553
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=46.60 E-value=25 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCCC----CCCCCHhHHHHHHHHHHHHH
Q 038918 213 ISERLKILQELVPN----GSKVDLVTMLEKAISYVKFL 246 (291)
Q Consensus 213 Iner~~~Lr~LVP~----~~K~DkASIL~eAI~YIK~L 246 (291)
|...|+.|+.+||. .+++-|..||..|.++++.|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 89999999999995 35667999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.06 E-value=72 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcC
Q 038918 206 AKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATD 256 (291)
Q Consensus 206 ERrRRerIner~~~Lr~LVP~~~K~DkASIL~eAI~YIK~LQ~qVq~Les~ 256 (291)
||++|.+...++.+.+. =..-..|+..|+.+|..|+..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDE 38 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666665554 133445666666666666643
No 21
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.36 E-value=48 Score=26.18 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 038918 235 MLEKAISYVKFLQLQVKVLATDEF 258 (291)
Q Consensus 235 IL~eAI~YIK~LQ~qVq~Les~~~ 258 (291)
..+.|=+||-+|.++++.|+.+++
T Consensus 64 f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 64 FDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhHHHHHHHHHhHHHHH
Confidence 456788999999999999997754
No 22
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=25.97 E-value=27 Score=28.81 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=22.3
Q ss_pred hccCCCCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 038918 221 QELVPNGSKVDLVTMLEKAISYVKFLQLQVKV 252 (291)
Q Consensus 221 r~LVP~~~K~DkASIL~eAI~YIK~LQ~qVq~ 252 (291)
..++|+-...-....|..+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 35677644332457899999999999998864
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=25.01 E-value=42 Score=27.93 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=23.6
Q ss_pred hccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 038918 221 QELVPNGSKVDLVTMLEKAISYVKFLQLQVK 251 (291)
Q Consensus 221 r~LVP~~~K~DkASIL~eAI~YIK~LQ~qVq 251 (291)
..++|+-...-...+++.+++||+.|++++.
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4577765544345789999999999998875
No 24
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=23.69 E-value=31 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.747 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHhc
Q 038918 268 DISQVREAIDAILSS 282 (291)
Q Consensus 268 ~~~~v~~~~da~l~s 282 (291)
++.|||.-+|.+|++
T Consensus 7 ELtQIK~kvDsLLe~ 21 (28)
T 1txp_A 7 ELTQIKQKVDSLLEN 21 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999999976
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.26 E-value=70 Score=26.01 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 038918 204 IAAKNRRERISERLKILQE 222 (291)
Q Consensus 204 ~aERrRRerIner~~~Lr~ 222 (291)
.+||.-|+|++.....|..
T Consensus 79 ~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 79 QAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhHHHHHHH
Confidence 3566666666666655543
Done!