BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038919
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLD 60
FIS LY L + I F+DDK+LE G SP L IE SR +++V+S NYA+S+WCLD
Sbjct: 23 NFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82
Query: 61 ELVKIVEYKNRED-QIFPIFYDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHAL 119
ELV I++++ + + PIFY VEP VR QT E F KH R++ EKV KWR AL
Sbjct: 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWRQAL 140
Query: 120 KVVANISG 127
A +SG
Sbjct: 141 TNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 2 FISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDE 61
F LY +L I+ FRDD +L KG I PNLL+AI++S+I + ++S YA S WCL E
Sbjct: 51 FTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110
Query: 62 LVKIVEYKNREDQ--IFPIFYDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHAL 119
L +IV + + + I PIFY V+P+ VR QT + +AF KH F + + +Q W+ AL
Sbjct: 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDAL 168
Query: 120 KVVANISGWEL 130
K V ++ GW +
Sbjct: 169 KKVGDLKGWHI 179
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 6 LYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDEL 62
L L +G + ++ G SI N++ IE+S SI VLS N+ S WC EL
Sbjct: 31 LLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL 87
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 12 DKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDEL 62
D I + + + G SIS N++ IE+S SI VLS N+ + WC E
Sbjct: 62 DGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 40/254 (15%)
Query: 169 IGIWGMGGLGKTTLARVV---YDLISHEFDGSSFLADVKEKYDKEGSVISL--------Q 217
+ I+GM G GK+ LA + L+ F G + K DK G ++ L Q
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG-KQDKSGLLMKLQNLCMRLDQ 208
Query: 218 KQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPG 277
++ S L L +I D + ++ R + + LL++DDV L+ F
Sbjct: 209 EESFSQRLPL---NIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKA-------FDNQ 257
Query: 278 SRIIITTRDEHLL-KLHRVEEVFKLEA-LTYDEAFQLFCLKAFETQKPREEYVHLSQLVV 335
+I++TTRD+ + + + V +E+ L ++ ++ L F K +E+ + ++
Sbjct: 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL--FVNMK-KEDLPAEAHSII 314
Query: 336 NYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKREP----------ENEILD-ILQISFD 384
G PL + ++G+ L P + W L +L+ + + E LD + IS +
Sbjct: 315 KECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE 373
Query: 385 GLKEAEKEIFLDVA 398
L+E K+ + D++
Sbjct: 374 MLREDIKDYYTDLS 387
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 40/254 (15%)
Query: 169 IGIWGMGGLGKTTLARVV---YDLISHEFDGSSFLADVKEKYDKEGSVISL--------Q 217
+ I+GM G GK+ LA + L+ F G + K DK G ++ L Q
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG-KQDKSGLLMKLQNLCMRLDQ 215
Query: 218 KQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPG 277
++ S L L +I D + ++ R + + LL++DDV L+ F
Sbjct: 216 EESFSQRLPL---NIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKA-------FDNQ 264
Query: 278 SRIIITTRDEHLL-KLHRVEEVFKLEA-LTYDEAFQLFCLKAFETQKPREEYVHLSQLVV 335
+I++TT D+ + + + V +E+ L ++ ++ L F K +E+ + ++
Sbjct: 265 CQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSL--FVNMK-KEDLPAEAHSII 321
Query: 336 NYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKREP----------ENEILD-ILQISFD 384
G PL + ++G+ L P + W L +L+ + + E LD + IS +
Sbjct: 322 KECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE 380
Query: 385 GLKEAEKEIFLDVA 398
L+E K+ + D++
Sbjct: 381 MLREDIKDYYTDLS 394
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 131 KDSKIRTESEILKELVGIESRLEKL------KFLMGAGCNDVRMI-GIWGMGGLGKTTLA 183
KD ++ E+ I EL E L + L GAG +DV MI G G G+GKTTLA
Sbjct: 10 KDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69
Query: 184 RVVYDLIS 191
+ +S
Sbjct: 70 KFTVKRVS 77
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 169 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD---------KEGSVISLQKQ 219
IG++G G+GKT L + + + ++ E G S A V E+ K+ VIS
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMKDSGVISKTSM 206
Query: 220 LISDLLKLADNSIRNVYDGINMIG--RRLRQKKVLLVIDDV 258
+ + + +R G+ M R + VLL ID++
Sbjct: 207 VFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFIDNI 247
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 169 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD---------KEGSVISLQKQ 219
IG++G G+GKT L + + I+ E G S A V E+ K+ VIS
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAM 213
Query: 220 LISDLLKLADNSIRNVYDGINMIG--RRLRQKKVLLVIDDV 258
+ + + +R G+ M R + + LL ID++
Sbjct: 214 VFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNI 254
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 112 VQKWRHALKVVA--NISGWELKDSKIRTESEILKELVGIESRL 152
V K H L+++ +I+G++L SKI+T S +++ G ES +
Sbjct: 348 VSKATHTLQLIGYDDIAGYQLPQSKIQTRSIHSEDITGNESHI 390
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 344 ALKVLGSFLFGRPVDEWTSTLERLKREP-----ENEILDILQISFDGLKEAEKEIFL 395
A K+L + + R ++ + +E L +P ENE +D ++ +DG+++ K + +
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM 550
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 27 GGSISPNLLKAIEESRISIIVLSRNYASSTWCLDEL 62
G I N++ +IE+S ++ VLS N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 27 GGSISPNLLKAIEESRISIIVLSRNYASSTWCLDEL 62
G I N++ +IE+S ++ VLS N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 27 GGSISPNLLKAIEESRISIIVLSRNYASSTWCLDEL 62
G I N++ +IE+S ++ VLS N+ S W EL
Sbjct: 44 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWSKYEL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,225,971
Number of Sequences: 62578
Number of extensions: 603487
Number of successful extensions: 2138
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2124
Number of HSP's gapped (non-prelim): 26
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)