Query 038919
Match_columns 483
No_of_seqs 417 out of 2941
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.1E-83 6.8E-88 711.3 47.8 472 1-483 27-529 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.7E-41 1.5E-45 355.2 26.3 304 146-456 161-496 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-38 3.3E-43 304.6 16.9 268 148-420 1-283 (287)
4 PLN03194 putative disease resi 100.0 1.3E-33 2.7E-38 238.8 11.4 130 1-147 41-171 (187)
5 PRK04841 transcriptional regul 99.8 7.5E-17 1.6E-21 178.8 25.8 292 143-459 14-336 (903)
6 PF01582 TIR: TIR domain; Int 99.7 6.5E-19 1.4E-23 149.3 4.3 119 2-120 14-140 (141)
7 COG3899 Predicted ATPase [Gene 99.7 4.4E-15 9.5E-20 159.4 19.0 325 144-481 1-404 (849)
8 PRK00411 cdc6 cell division co 99.6 9.8E-13 2.1E-17 131.8 26.4 283 143-436 30-358 (394)
9 COG2909 MalT ATP-dependent tra 99.6 4E-13 8.7E-18 137.3 22.7 294 143-461 19-344 (894)
10 smart00255 TIR Toll - interleu 99.6 2.3E-14 5E-19 121.6 10.2 119 2-123 18-138 (140)
11 TIGR00635 ruvB Holliday juncti 99.5 8.3E-13 1.8E-17 127.5 19.6 274 143-441 4-294 (305)
12 TIGR02928 orc1/cdc6 family rep 99.5 2E-11 4.3E-16 121.0 27.7 284 143-437 15-351 (365)
13 PRK00080 ruvB Holliday junctio 99.5 1.3E-12 2.8E-17 127.0 16.6 259 142-440 24-314 (328)
14 PF01637 Arch_ATPase: Archaeal 99.5 1.6E-13 3.4E-18 127.1 9.7 194 145-348 1-234 (234)
15 COG3903 Predicted ATPase [Gene 99.3 3.3E-12 7.1E-17 121.3 6.9 283 165-459 13-318 (414)
16 PF05729 NACHT: NACHT domain 99.3 6.7E-11 1.5E-15 103.2 12.2 142 167-317 1-163 (166)
17 TIGR03015 pepcterm_ATPase puta 99.3 1.4E-09 3.1E-14 102.9 22.2 178 166-352 43-242 (269)
18 PF13676 TIR_2: TIR domain; PD 99.2 7.1E-12 1.5E-16 99.9 4.8 76 1-81 11-87 (102)
19 COG2256 MGS1 ATPase related to 99.2 3E-09 6.5E-14 100.8 20.2 233 143-412 30-288 (436)
20 PRK12402 replication factor C 99.1 1.3E-08 2.7E-13 99.9 19.7 202 139-347 11-225 (337)
21 PRK13342 recombination factor 99.1 2E-08 4.4E-13 100.7 21.1 177 142-351 11-199 (413)
22 PTZ00112 origin recognition co 99.0 2.8E-08 6.1E-13 103.3 21.1 281 143-437 755-1087(1164)
23 PRK06893 DNA replication initi 99.0 2.3E-08 5E-13 91.9 15.6 151 166-351 39-206 (229)
24 COG1474 CDC6 Cdc6-related prot 98.9 1.9E-07 4.1E-12 91.2 21.4 280 143-437 17-335 (366)
25 PLN03025 replication factor C 98.9 1.1E-07 2.5E-12 92.0 19.6 186 138-346 8-198 (319)
26 PRK07471 DNA polymerase III su 98.9 2.8E-07 6.1E-12 90.1 22.1 196 143-348 19-238 (365)
27 TIGR03420 DnaA_homol_Hda DnaA 98.9 9.4E-08 2E-12 88.0 17.9 169 148-351 22-204 (226)
28 PRK00440 rfc replication facto 98.9 1.9E-07 4.1E-12 90.8 20.9 184 139-346 13-201 (319)
29 PRK07003 DNA polymerase III su 98.9 2.3E-07 5.1E-12 96.0 21.8 196 140-348 13-221 (830)
30 PRK14963 DNA polymerase III su 98.9 1.1E-07 2.4E-12 96.8 19.3 191 142-345 13-214 (504)
31 PRK04195 replication factor C 98.9 1.7E-07 3.7E-12 96.0 20.4 186 139-352 10-206 (482)
32 PF13191 AAA_16: AAA ATPase do 98.9 1.8E-08 4E-13 89.5 10.7 50 144-193 1-51 (185)
33 PRK14961 DNA polymerase III su 98.8 6.5E-07 1.4E-11 88.2 21.4 191 142-346 15-218 (363)
34 PF14516 AAA_35: AAA-like doma 98.8 4.3E-06 9.4E-11 81.2 26.8 282 143-450 11-328 (331)
35 PTZ00202 tuzin; Provisional 98.8 1.9E-06 4E-11 83.7 23.2 158 142-317 261-434 (550)
36 PRK14956 DNA polymerase III su 98.8 4.3E-07 9.2E-12 90.5 19.5 195 141-344 16-218 (484)
37 PRK14960 DNA polymerase III su 98.8 3.9E-07 8.5E-12 93.4 18.3 193 141-346 13-217 (702)
38 PRK12323 DNA polymerase III su 98.8 6E-07 1.3E-11 91.8 19.5 198 141-346 14-223 (700)
39 TIGR01242 26Sp45 26S proteasom 98.8 2.1E-07 4.6E-12 91.9 16.0 172 143-342 122-328 (364)
40 PF13173 AAA_14: AAA domain 98.8 2.2E-08 4.8E-13 83.2 7.5 119 167-309 3-127 (128)
41 PRK08903 DnaA regulatory inact 98.8 1.9E-07 4.1E-12 86.0 14.2 172 143-352 18-203 (227)
42 PRK14949 DNA polymerase III su 98.8 1.1E-06 2.4E-11 92.9 21.3 190 142-347 15-219 (944)
43 PRK13341 recombination factor 98.8 1.2E-06 2.5E-11 92.9 21.6 172 142-346 27-215 (725)
44 PRK09112 DNA polymerase III su 98.7 9.6E-07 2.1E-11 85.9 18.7 198 142-349 22-241 (351)
45 PRK05564 DNA polymerase III su 98.7 1E-06 2.2E-11 85.2 18.7 177 143-347 4-189 (313)
46 TIGR02397 dnaX_nterm DNA polym 98.7 2.9E-06 6.2E-11 83.8 21.8 194 142-349 13-219 (355)
47 PF05496 RuvB_N: Holliday junc 98.7 2.4E-07 5.3E-12 82.2 12.3 177 143-353 24-226 (233)
48 PRK07940 DNA polymerase III su 98.7 1.2E-06 2.7E-11 86.4 18.5 187 143-348 5-213 (394)
49 cd00009 AAA The AAA+ (ATPases 98.7 2.2E-07 4.8E-12 78.8 11.7 122 146-287 1-130 (151)
50 PRK14962 DNA polymerase III su 98.7 3E-06 6.4E-11 85.7 21.4 197 141-351 12-222 (472)
51 PRK08727 hypothetical protein; 98.7 9.8E-07 2.1E-11 81.3 16.4 168 143-345 19-201 (233)
52 PRK06645 DNA polymerase III su 98.7 1.1E-06 2.5E-11 89.1 18.1 199 138-345 16-226 (507)
53 KOG2028 ATPase related to the 98.7 3.1E-07 6.8E-12 85.8 12.6 172 143-342 138-330 (554)
54 PRK14087 dnaA chromosomal repl 98.7 8.4E-07 1.8E-11 89.5 16.4 165 166-351 141-322 (450)
55 PRK08691 DNA polymerase III su 98.7 9E-07 2E-11 91.6 16.8 194 142-348 15-220 (709)
56 PF13401 AAA_22: AAA domain; P 98.7 1.8E-07 4E-12 78.0 9.9 114 166-286 4-125 (131)
57 PRK14964 DNA polymerase III su 98.6 1.9E-06 4.1E-11 86.8 18.4 190 142-345 12-214 (491)
58 PRK14955 DNA polymerase III su 98.6 1.4E-06 3E-11 86.9 17.2 199 141-347 14-227 (397)
59 PRK14957 DNA polymerase III su 98.6 1.9E-06 4E-11 88.1 17.6 194 142-348 15-221 (546)
60 PRK14951 DNA polymerase III su 98.6 7.7E-06 1.7E-10 84.8 22.1 197 142-347 15-224 (618)
61 TIGR00678 holB DNA polymerase 98.6 3E-06 6.5E-11 75.5 16.9 88 248-343 95-186 (188)
62 PRK03992 proteasome-activating 98.6 2E-06 4.4E-11 85.4 17.4 171 143-341 131-336 (389)
63 PRK07994 DNA polymerase III su 98.6 1.5E-06 3.2E-11 90.2 16.5 192 142-346 15-218 (647)
64 PRK14958 DNA polymerase III su 98.6 5.8E-06 1.3E-10 84.6 20.4 192 142-346 15-218 (509)
65 PRK14954 DNA polymerase III su 98.6 6.6E-06 1.4E-10 85.6 20.9 196 143-345 16-225 (620)
66 PF00308 Bac_DnaA: Bacterial d 98.6 1.5E-06 3.3E-11 79.1 14.2 160 166-350 34-210 (219)
67 PRK09111 DNA polymerase III su 98.6 3.4E-06 7.3E-11 87.5 18.5 202 138-348 19-233 (598)
68 PRK08084 DNA replication initi 98.6 3E-06 6.4E-11 78.2 16.2 164 151-350 32-211 (235)
69 PRK05896 DNA polymerase III su 98.6 5.9E-06 1.3E-10 84.7 19.5 194 142-349 15-222 (605)
70 PRK14952 DNA polymerase III su 98.6 2E-05 4.3E-10 81.5 23.4 195 141-348 11-220 (584)
71 PRK05642 DNA replication initi 98.6 2.3E-06 5E-11 78.8 15.0 151 166-351 45-211 (234)
72 PRK14950 DNA polymerase III su 98.5 1.4E-05 2.9E-10 83.8 21.9 195 142-349 15-222 (585)
73 TIGR03345 VI_ClpV1 type VI sec 98.5 2.1E-06 4.5E-11 93.2 16.3 176 143-341 187-389 (852)
74 PRK09087 hypothetical protein; 98.5 7.9E-07 1.7E-11 81.2 11.0 141 166-350 44-197 (226)
75 PRK14970 DNA polymerase III su 98.5 2.2E-05 4.8E-10 77.8 22.1 179 142-345 16-206 (367)
76 KOG0989 Replication factor C, 98.5 1.9E-05 4.1E-10 72.7 19.3 186 138-342 31-224 (346)
77 TIGR02881 spore_V_K stage V sp 98.5 2.7E-06 5.8E-11 80.0 14.0 155 143-319 6-193 (261)
78 TIGR02639 ClpA ATP-dependent C 98.5 2.2E-06 4.7E-11 92.2 15.0 152 143-317 182-358 (731)
79 PRK07764 DNA polymerase III su 98.5 1.6E-05 3.4E-10 85.5 21.3 191 141-345 13-218 (824)
80 COG2255 RuvB Holliday junction 98.5 1.1E-05 2.3E-10 73.5 16.3 261 139-442 22-317 (332)
81 PRK14969 DNA polymerase III su 98.5 1.5E-05 3.2E-10 82.1 19.7 192 143-348 16-221 (527)
82 PRK14959 DNA polymerase III su 98.5 2E-05 4.4E-10 81.3 20.4 197 142-352 15-225 (624)
83 PRK08451 DNA polymerase III su 98.5 1.6E-05 3.4E-10 81.1 19.3 191 142-348 13-218 (535)
84 PRK14953 DNA polymerase III su 98.5 7.3E-05 1.6E-09 76.1 24.1 191 142-349 15-221 (486)
85 TIGR03689 pup_AAA proteasome A 98.4 5.1E-06 1.1E-10 84.1 14.5 160 143-318 182-379 (512)
86 PHA02544 44 clamp loader, smal 98.4 6.6E-06 1.4E-10 79.8 14.3 152 137-315 15-171 (316)
87 PRK14088 dnaA chromosomal repl 98.4 1.5E-05 3.2E-10 80.4 17.0 159 166-348 130-305 (440)
88 PF10443 RNA12: RNA12 protein; 98.4 0.00033 7.1E-09 68.4 25.1 274 148-440 1-374 (431)
89 CHL00095 clpC Clp protease ATP 98.4 1.3E-05 2.9E-10 87.3 17.6 151 143-316 179-353 (821)
90 TIGR00362 DnaA chromosomal rep 98.4 1.7E-05 3.7E-10 79.6 17.0 160 166-348 136-310 (405)
91 PRK00149 dnaA chromosomal repl 98.3 1.3E-05 2.7E-10 81.6 15.6 158 166-348 148-322 (450)
92 PRK07133 DNA polymerase III su 98.3 4.6E-05 9.9E-10 79.9 19.6 190 143-348 18-220 (725)
93 PRK14971 DNA polymerase III su 98.3 0.00011 2.4E-09 76.9 22.6 192 142-345 16-219 (614)
94 PRK06305 DNA polymerase III su 98.3 8.4E-05 1.8E-09 75.1 21.0 190 142-345 16-219 (451)
95 PRK14086 dnaA chromosomal repl 98.3 0.00015 3.2E-09 74.7 22.7 157 167-348 315-488 (617)
96 PTZ00454 26S protease regulato 98.3 3E-05 6.4E-10 76.9 16.9 173 143-342 145-351 (398)
97 PRK14948 DNA polymerase III su 98.3 4.8E-05 1E-09 79.6 19.2 197 140-348 13-222 (620)
98 PRK06647 DNA polymerase III su 98.3 4.3E-05 9.4E-10 79.0 18.7 187 142-346 15-218 (563)
99 KOG2227 Pre-initiation complex 98.3 2.9E-05 6.3E-10 75.5 16.0 201 143-348 150-372 (529)
100 PRK10865 protein disaggregatio 98.3 2.5E-05 5.5E-10 85.1 17.7 152 143-317 178-354 (857)
101 TIGR03346 chaperone_ClpB ATP-d 98.3 2.1E-05 4.4E-10 86.1 16.9 152 143-317 173-349 (852)
102 PRK05707 DNA polymerase III su 98.3 5.3E-05 1.2E-09 73.1 17.8 93 250-348 107-203 (328)
103 PTZ00361 26 proteosome regulat 98.3 1.4E-05 2.9E-10 79.9 13.7 173 143-342 183-389 (438)
104 PRK06620 hypothetical protein; 98.3 2.2E-05 4.9E-10 71.1 13.7 136 167-348 45-189 (214)
105 PRK07399 DNA polymerase III su 98.2 0.00041 8.8E-09 66.7 22.7 194 143-349 4-222 (314)
106 COG3267 ExeA Type II secretory 98.2 0.00015 3.2E-09 65.4 17.8 179 164-351 49-248 (269)
107 PRK11034 clpA ATP-dependent Cl 98.2 7.7E-06 1.7E-10 87.2 11.3 152 143-317 186-362 (758)
108 PRK05563 DNA polymerase III su 98.2 0.0002 4.3E-09 74.5 21.4 190 142-345 15-217 (559)
109 PF05673 DUF815: Protein of un 98.2 0.00026 5.6E-09 64.1 19.1 51 143-193 27-79 (249)
110 PRK12422 chromosomal replicati 98.2 5.3E-05 1.1E-09 76.3 16.4 150 167-342 142-307 (445)
111 TIGR02880 cbbX_cfxQ probable R 98.2 2.7E-05 5.8E-10 73.9 13.6 130 168-319 60-210 (284)
112 TIGR01241 FtsH_fam ATP-depende 98.2 6.1E-05 1.3E-09 77.6 17.1 179 143-348 55-267 (495)
113 PRK07952 DNA replication prote 98.2 2.1E-05 4.5E-10 72.4 12.2 49 152-200 85-133 (244)
114 PRK14965 DNA polymerase III su 98.2 0.00013 2.7E-09 76.3 19.4 192 143-348 16-221 (576)
115 COG1222 RPT1 ATP-dependent 26S 98.2 4.7E-05 1E-09 71.6 14.4 172 143-342 151-357 (406)
116 CHL00176 ftsH cell division pr 98.2 6.7E-05 1.5E-09 78.7 17.2 171 143-340 183-386 (638)
117 PF00004 AAA: ATPase family as 98.2 2.2E-05 4.8E-10 65.2 10.6 23 169-191 1-23 (132)
118 COG1373 Predicted ATPase (AAA+ 98.1 0.00026 5.6E-09 70.5 19.5 240 147-435 21-269 (398)
119 CHL00181 cbbX CbbX; Provisiona 98.1 0.00016 3.4E-09 68.7 17.1 132 166-319 59-211 (287)
120 PRK08769 DNA polymerase III su 98.1 0.00029 6.3E-09 67.5 18.1 93 248-348 112-208 (319)
121 PF05621 TniB: Bacterial TniB 98.1 0.00016 3.5E-09 67.5 15.7 185 150-346 44-259 (302)
122 PRK12377 putative replication 98.1 8.9E-05 1.9E-09 68.4 14.0 36 166-201 101-136 (248)
123 TIGR02903 spore_lon_C ATP-depe 98.1 0.00015 3.2E-09 76.3 16.7 46 143-190 154-199 (615)
124 KOG2543 Origin recognition com 98.0 8.8E-05 1.9E-09 70.4 13.0 200 143-351 6-229 (438)
125 PRK08116 hypothetical protein; 98.0 5.4E-05 1.2E-09 71.1 11.4 100 167-287 115-221 (268)
126 CHL00195 ycf46 Ycf46; Provisio 98.0 0.00015 3.3E-09 73.6 15.3 175 143-342 228-429 (489)
127 TIGR00602 rad24 checkpoint pro 98.0 7.4E-05 1.6E-09 77.8 13.3 54 138-191 79-135 (637)
128 cd01128 rho_factor Transcripti 98.0 8.5E-06 1.8E-10 75.3 5.5 94 165-261 15-115 (249)
129 PRK09376 rho transcription ter 98.0 2E-05 4.4E-10 76.1 7.7 94 165-261 168-268 (416)
130 TIGR01243 CDC48 AAA family ATP 98.0 0.0003 6.5E-09 76.1 17.6 173 143-342 178-381 (733)
131 KOG0991 Replication factor C, 98.0 0.00064 1.4E-08 60.3 16.2 52 138-191 22-73 (333)
132 COG0593 DnaA ATPase involved i 97.9 0.00068 1.5E-08 66.5 17.4 152 165-341 112-279 (408)
133 TIGR01243 CDC48 AAA family ATP 97.9 0.0004 8.7E-09 75.2 17.1 173 143-342 453-657 (733)
134 PRK08058 DNA polymerase III su 97.9 0.00069 1.5E-08 65.8 16.9 162 143-316 5-181 (329)
135 smart00382 AAA ATPases associa 97.9 6.2E-05 1.3E-09 63.0 8.2 28 167-194 3-30 (148)
136 PRK06090 DNA polymerase III su 97.9 0.003 6.4E-08 60.6 20.2 91 248-348 107-201 (319)
137 KOG0741 AAA+-type ATPase [Post 97.8 0.00072 1.6E-08 66.9 15.7 130 164-316 536-685 (744)
138 PLN00020 ribulose bisphosphate 97.8 0.00073 1.6E-08 64.8 15.4 151 165-343 147-333 (413)
139 PRK10536 hypothetical protein; 97.8 9.1E-05 2E-09 67.8 9.0 139 143-288 55-214 (262)
140 KOG0744 AAA+-type ATPase [Post 97.8 0.00029 6.2E-09 65.5 11.9 80 166-261 177-262 (423)
141 PRK06871 DNA polymerase III su 97.8 0.003 6.5E-08 60.7 19.3 174 153-345 12-200 (325)
142 PRK07993 DNA polymerase III su 97.8 0.002 4.3E-08 62.5 18.3 91 248-345 107-201 (334)
143 TIGR00767 rho transcription te 97.8 9E-05 2E-09 72.1 8.7 94 165-261 167-267 (415)
144 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00075 1.6E-08 63.4 14.2 36 152-191 11-46 (262)
145 PF07693 KAP_NTPase: KAP famil 97.8 0.0033 7.2E-08 61.2 19.3 77 148-224 1-80 (325)
146 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00068 1.5E-08 68.2 13.8 172 143-341 190-395 (802)
147 PRK10865 protein disaggregatio 97.7 0.0013 2.9E-08 71.9 17.5 50 143-192 568-624 (857)
148 PRK08181 transposase; Validate 97.7 0.00021 4.5E-09 66.9 9.6 34 167-200 107-140 (269)
149 PRK06964 DNA polymerase III su 97.7 0.0056 1.2E-07 59.3 19.5 90 249-348 132-225 (342)
150 KOG0730 AAA+-type ATPase [Post 97.7 0.0006 1.3E-08 69.3 13.1 172 144-342 435-637 (693)
151 TIGR02639 ClpA ATP-dependent C 97.7 0.0012 2.6E-08 71.4 16.3 49 143-191 454-509 (731)
152 PRK09361 radB DNA repair and r 97.7 0.00017 3.8E-09 66.1 8.5 48 154-201 11-58 (225)
153 PRK09183 transposase/IS protei 97.7 0.00022 4.8E-09 66.7 9.1 27 167-193 103-129 (259)
154 COG2812 DnaX DNA polymerase II 97.7 0.0018 3.9E-08 65.5 15.9 190 141-342 14-214 (515)
155 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0014 3.1E-08 71.9 16.4 50 143-192 565-621 (852)
156 PF10236 DAP3: Mitochondrial r 97.6 0.0057 1.2E-07 58.8 18.6 48 298-345 258-306 (309)
157 PF02562 PhoH: PhoH-like prote 97.6 0.0002 4.3E-09 63.7 7.9 131 149-287 6-156 (205)
158 PRK06835 DNA replication prote 97.6 0.00018 3.8E-09 69.4 8.1 35 167-201 184-218 (329)
159 COG1223 Predicted ATPase (AAA+ 97.6 0.0026 5.7E-08 57.5 14.7 172 143-341 121-318 (368)
160 COG0466 Lon ATP-dependent Lon 97.6 0.00069 1.5E-08 69.6 12.4 159 143-318 323-509 (782)
161 PRK06526 transposase; Provisio 97.6 0.00013 2.8E-09 67.8 6.8 27 167-193 99-125 (254)
162 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00074 1.6E-08 68.0 12.3 128 166-318 545-693 (802)
163 KOG2228 Origin recognition com 97.6 0.0019 4.1E-08 60.6 13.9 173 143-317 24-219 (408)
164 KOG0735 AAA+-type ATPase [Post 97.6 0.0016 3.5E-08 66.8 14.5 159 166-346 431-614 (952)
165 COG0542 clpA ATP-binding subun 97.6 0.00076 1.6E-08 71.1 12.6 119 143-273 491-619 (786)
166 TIGR00763 lon ATP-dependent pr 97.6 0.00099 2.1E-08 72.4 14.0 52 143-194 320-375 (775)
167 KOG2004 Mitochondrial ATP-depe 97.6 0.00088 1.9E-08 68.6 12.4 159 143-318 411-597 (906)
168 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00097 2.1E-08 72.8 13.5 50 143-192 566-622 (852)
169 KOG0731 AAA+-type ATPase conta 97.6 0.0021 4.5E-08 67.4 15.1 177 143-345 311-521 (774)
170 cd01131 PilT Pilus retraction 97.6 0.0006 1.3E-08 61.1 9.9 110 167-290 2-112 (198)
171 PF13177 DNA_pol3_delta2: DNA 97.5 0.00086 1.9E-08 58.0 10.4 133 147-305 1-162 (162)
172 PRK04132 replication factor C 97.5 0.0088 1.9E-07 64.5 20.0 154 171-346 569-729 (846)
173 TIGR02902 spore_lonB ATP-depen 97.5 0.0017 3.6E-08 67.3 14.3 47 142-190 64-110 (531)
174 PRK09354 recA recombinase A; P 97.5 0.00036 7.9E-09 67.2 8.7 97 154-259 47-148 (349)
175 PRK11034 clpA ATP-dependent Cl 97.5 0.0015 3.3E-08 70.0 14.0 49 143-191 458-513 (758)
176 PRK08699 DNA polymerase III su 97.5 0.0037 7.9E-08 60.4 15.5 86 250-345 114-203 (325)
177 PRK06921 hypothetical protein; 97.5 0.00074 1.6E-08 63.4 10.4 36 166-201 117-153 (266)
178 cd01394 radB RadB. The archaea 97.5 0.00044 9.6E-09 63.1 8.8 49 153-201 6-54 (218)
179 TIGR02012 tigrfam_recA protein 97.5 0.00047 1E-08 65.9 9.2 97 154-259 42-143 (321)
180 TIGR02237 recomb_radB DNA repa 97.5 0.00024 5.3E-09 64.3 6.8 44 158-201 4-47 (209)
181 PRK11331 5-methylcytosine-spec 97.5 0.00036 7.7E-09 69.2 8.2 47 142-192 174-220 (459)
182 CHL00095 clpC Clp protease ATP 97.5 0.002 4.3E-08 70.6 14.8 132 143-286 509-661 (821)
183 PF04665 Pox_A32: Poxvirus A32 97.5 0.00065 1.4E-08 62.0 8.8 35 167-201 14-48 (241)
184 PRK12608 transcription termina 97.5 0.00067 1.4E-08 65.7 9.3 103 155-261 123-232 (380)
185 cd01120 RecA-like_NTPases RecA 97.5 0.00071 1.5E-08 58.3 8.9 34 168-201 1-34 (165)
186 COG1484 DnaC DNA replication p 97.4 0.00098 2.1E-08 62.0 10.2 36 165-200 104-139 (254)
187 COG0470 HolB ATPase involved i 97.4 0.0014 3E-08 63.8 11.8 48 145-192 3-50 (325)
188 PF01695 IstB_IS21: IstB-like 97.4 0.00021 4.6E-09 62.7 5.4 36 166-201 47-82 (178)
189 cd01393 recA_like RecA is a b 97.4 0.0014 3E-08 60.2 11.1 41 154-194 7-47 (226)
190 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0011 2.4E-08 62.2 10.4 103 151-270 68-170 (264)
191 PRK05541 adenylylsulfate kinas 97.4 0.00091 2E-08 58.8 9.2 37 165-201 6-42 (176)
192 PRK10733 hflB ATP-dependent me 97.4 0.0058 1.3E-07 64.9 16.6 172 143-341 152-356 (644)
193 PRK06067 flagellar accessory p 97.4 0.0014 3.1E-08 60.5 10.7 48 154-201 13-60 (234)
194 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00096 2.1E-08 62.1 9.3 42 165-206 68-109 (274)
195 KOG1514 Origin recognition com 97.4 0.0079 1.7E-07 61.9 16.4 198 143-351 396-624 (767)
196 COG0542 clpA ATP-binding subun 97.4 0.00058 1.3E-08 71.9 8.7 152 143-316 170-345 (786)
197 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00019 4E-09 69.2 4.6 50 143-192 51-104 (361)
198 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.00069 1.5E-08 57.7 7.5 116 167-288 3-139 (159)
199 cd00983 recA RecA is a bacter 97.4 0.0008 1.7E-08 64.4 8.7 97 154-259 42-143 (325)
200 PRK10787 DNA-binding ATP-depen 97.4 0.0041 8.8E-08 67.2 15.0 51 143-193 322-376 (784)
201 PRK08939 primosomal protein Dn 97.4 0.0017 3.6E-08 62.2 10.8 36 166-201 156-191 (306)
202 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0021 4.6E-08 59.4 11.2 49 153-201 8-56 (237)
203 PF03215 Rad17: Rad17 cell cyc 97.3 0.0018 3.8E-08 66.4 11.3 52 140-191 16-70 (519)
204 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00063 1.4E-08 62.9 7.5 37 154-190 7-43 (235)
205 PF13207 AAA_17: AAA domain; P 97.3 0.00018 3.8E-09 58.9 3.3 23 168-190 1-23 (121)
206 PRK04296 thymidine kinase; Pro 97.3 0.0013 2.8E-08 58.6 8.5 110 167-287 3-116 (190)
207 PRK11608 pspF phage shock prot 97.3 0.01 2.2E-07 57.7 15.3 47 143-189 6-52 (326)
208 KOG0734 AAA+-type ATPase conta 97.3 0.003 6.5E-08 62.8 11.4 151 143-317 304-484 (752)
209 COG1618 Predicted nucleotide k 97.3 0.00033 7.2E-09 58.5 4.2 38 167-204 6-45 (179)
210 PRK06696 uridine kinase; Valid 97.2 0.00074 1.6E-08 61.8 6.8 46 148-193 3-49 (223)
211 KOG0743 AAA+-type ATPase [Post 97.2 0.0087 1.9E-07 58.7 14.3 150 166-352 235-413 (457)
212 COG2607 Predicted ATPase (AAA+ 97.2 0.0041 8.9E-08 55.7 10.9 54 143-196 60-115 (287)
213 PF08423 Rad51: Rad51; InterP 97.2 0.00083 1.8E-08 62.7 7.0 37 154-190 26-62 (256)
214 PRK04328 hypothetical protein; 97.2 0.0018 3.9E-08 60.3 9.0 48 154-201 11-58 (249)
215 PF00448 SRP54: SRP54-type pro 97.2 0.0011 2.5E-08 59.0 7.3 28 166-193 1-28 (196)
216 KOG0739 AAA+-type ATPase [Post 97.2 0.013 2.8E-07 54.2 13.8 172 143-342 133-335 (439)
217 PRK05022 anaerobic nitric oxid 97.2 0.062 1.3E-06 55.7 20.9 49 143-191 187-235 (509)
218 PRK07667 uridine kinase; Provi 97.2 0.001 2.2E-08 59.5 6.8 42 152-193 3-44 (193)
219 KOG0728 26S proteasome regulat 97.2 0.021 4.6E-07 51.4 14.8 146 144-317 147-331 (404)
220 PRK11889 flhF flagellar biosyn 97.2 0.0087 1.9E-07 58.4 13.4 29 165-193 240-268 (436)
221 PF01583 APS_kinase: Adenylyls 97.2 0.00047 1E-08 58.5 4.3 36 166-201 2-37 (156)
222 KOG0727 26S proteasome regulat 97.1 0.005 1.1E-07 55.4 10.5 150 144-317 156-339 (408)
223 PF14532 Sigma54_activ_2: Sigm 97.1 0.00034 7.3E-09 58.8 3.1 46 146-191 1-46 (138)
224 TIGR01420 pilT_fam pilus retra 97.1 0.0012 2.7E-08 64.4 7.4 108 166-287 122-230 (343)
225 PHA00729 NTP-binding motif con 97.1 0.0039 8.5E-08 56.2 9.7 27 165-191 16-42 (226)
226 KOG3928 Mitochondrial ribosome 97.1 0.02 4.4E-07 55.3 14.8 57 296-352 403-460 (461)
227 cd02027 APSK Adenosine 5'-phos 97.1 0.0045 9.7E-08 52.7 9.7 25 168-192 1-25 (149)
228 cd01121 Sms Sms (bacterial rad 97.1 0.003 6.4E-08 62.1 9.7 49 153-201 69-117 (372)
229 TIGR02974 phageshock_pspF psp 97.1 0.012 2.6E-07 57.1 13.7 46 145-190 1-46 (329)
230 cd03228 ABCC_MRP_Like The MRP 97.1 0.0056 1.2E-07 53.5 10.2 34 166-200 28-61 (171)
231 KOG0736 Peroxisome assembly fa 97.0 0.056 1.2E-06 56.4 18.3 120 167-311 706-850 (953)
232 cd00544 CobU Adenosylcobinamid 97.0 0.0017 3.7E-08 56.3 6.7 21 169-189 2-22 (169)
233 PF13604 AAA_30: AAA domain; P 97.0 0.0041 8.9E-08 55.6 9.3 119 151-288 6-132 (196)
234 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0038 8.3E-08 52.8 8.6 100 166-291 26-131 (144)
235 COG0468 RecA RecA/RadA recombi 97.0 0.0025 5.3E-08 59.6 8.0 98 155-258 49-150 (279)
236 PF08433 KTI12: Chromatin asso 97.0 0.0026 5.6E-08 59.7 8.1 27 167-193 2-28 (270)
237 PRK06762 hypothetical protein; 97.0 0.0053 1.1E-07 53.3 9.5 25 166-190 2-26 (166)
238 COG0464 SpoVK ATPases of the A 97.0 0.0055 1.2E-07 63.3 11.2 150 165-340 275-445 (494)
239 cd03238 ABC_UvrA The excision 97.0 0.0052 1.1E-07 53.8 9.3 22 166-187 21-42 (176)
240 cd01124 KaiC KaiC is a circadi 97.0 0.0017 3.6E-08 57.6 6.2 33 169-201 2-34 (187)
241 COG1066 Sms Predicted ATP-depe 96.9 0.0064 1.4E-07 58.8 10.1 48 153-201 80-127 (456)
242 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0069 1.5E-07 55.7 10.2 48 154-201 8-55 (229)
243 cd03247 ABCC_cytochrome_bd The 96.9 0.0071 1.5E-07 53.2 9.8 26 166-191 28-53 (178)
244 KOG1970 Checkpoint RAD17-RFC c 96.9 0.0089 1.9E-07 59.8 11.2 46 145-190 84-134 (634)
245 PLN03187 meiotic recombination 96.9 0.0023 5E-08 62.0 7.1 37 154-190 114-150 (344)
246 KOG3678 SARM protein (with ste 96.9 0.0017 3.7E-08 63.0 6.1 74 4-81 629-710 (832)
247 PRK12723 flagellar biosynthesi 96.9 0.015 3.2E-07 57.4 12.8 27 165-191 173-199 (388)
248 TIGR02238 recomb_DMC1 meiotic 96.9 0.0028 6.1E-08 60.8 7.7 37 153-189 83-119 (313)
249 PRK00889 adenylylsulfate kinas 96.9 0.0066 1.4E-07 53.2 9.5 29 165-193 3-31 (175)
250 TIGR03499 FlhF flagellar biosy 96.9 0.0064 1.4E-07 57.7 10.0 29 165-193 193-221 (282)
251 TIGR01817 nifA Nif-specific re 96.9 0.013 2.9E-07 61.1 13.3 48 143-190 196-243 (534)
252 KOG0735 AAA+-type ATPase [Post 96.9 0.024 5.2E-07 58.5 14.2 149 168-344 703-872 (952)
253 PRK15455 PrkA family serine pr 96.9 0.0014 2.9E-08 66.7 5.5 51 143-193 76-130 (644)
254 cd01130 VirB11-like_ATPase Typ 96.9 0.0018 3.9E-08 57.4 5.7 93 166-267 25-118 (186)
255 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0096 2.1E-07 51.7 10.1 127 166-301 27-160 (166)
256 PF13671 AAA_33: AAA domain; P 96.9 0.0035 7.6E-08 52.8 7.1 24 168-191 1-24 (143)
257 PRK08118 topology modulation p 96.9 0.00085 1.8E-08 58.3 3.3 24 168-191 3-26 (167)
258 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.011 2.3E-07 52.3 10.2 23 168-190 1-23 (183)
259 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.011 2.4E-07 54.2 10.1 50 241-292 149-204 (254)
260 TIGR00416 sms DNA repair prote 96.8 0.0066 1.4E-07 61.5 9.6 50 152-201 80-129 (454)
261 PRK08533 flagellar accessory p 96.8 0.0067 1.4E-07 55.7 8.8 46 156-201 14-59 (230)
262 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 54.9 3.1 22 169-190 1-22 (129)
263 PRK11823 DNA repair protein Ra 96.8 0.0072 1.6E-07 61.2 9.8 49 153-201 67-115 (446)
264 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.015 3.3E-07 66.7 12.9 25 166-190 1630-1654(2281)
265 COG2884 FtsE Predicted ATPase 96.8 0.012 2.7E-07 50.9 9.5 54 239-294 145-204 (223)
266 TIGR00708 cobA cob(I)alamin ad 96.8 0.0084 1.8E-07 51.8 8.7 117 166-287 5-140 (173)
267 KOG2035 Replication factor C, 96.8 0.027 5.7E-07 51.7 12.1 210 143-369 13-260 (351)
268 PF02456 Adeno_IVa2: Adenoviru 96.8 0.062 1.3E-06 50.1 14.6 35 166-200 87-122 (369)
269 TIGR02858 spore_III_AA stage I 96.8 0.0045 9.7E-08 58.0 7.6 116 166-289 111-231 (270)
270 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0036 7.9E-08 58.3 7.0 26 168-193 1-26 (249)
271 TIGR02236 recomb_radA DNA repa 96.8 0.0066 1.4E-07 58.6 8.9 38 154-191 83-120 (310)
272 KOG0652 26S proteasome regulat 96.8 0.095 2E-06 47.6 15.2 51 143-193 171-232 (424)
273 PTZ00494 tuzin-like protein; P 96.8 0.28 6.1E-06 48.5 19.5 160 143-317 371-544 (664)
274 cd03214 ABC_Iron-Siderophores_ 96.8 0.012 2.5E-07 52.0 9.7 122 166-290 25-161 (180)
275 COG0572 Udk Uridine kinase [Nu 96.7 0.0039 8.4E-08 55.6 6.5 29 165-193 7-35 (218)
276 KOG0729 26S proteasome regulat 96.7 0.025 5.4E-07 51.4 11.6 49 143-191 177-236 (435)
277 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0074 1.6E-07 52.9 8.3 107 166-292 25-137 (177)
278 PRK15429 formate hydrogenlyase 96.7 0.037 7.9E-07 59.7 15.2 48 143-190 376-423 (686)
279 cd01125 repA Hexameric Replica 96.7 0.015 3.2E-07 53.9 10.7 24 168-191 3-26 (239)
280 PRK05800 cobU adenosylcobinami 96.7 0.00094 2E-08 58.1 2.4 23 168-190 3-25 (170)
281 cd03246 ABCC_Protease_Secretio 96.7 0.0082 1.8E-07 52.5 8.4 34 166-200 28-61 (173)
282 PRK14974 cell division protein 96.7 0.028 6.1E-07 54.4 12.7 29 165-193 139-167 (336)
283 PF00485 PRK: Phosphoribulokin 96.7 0.0014 3E-08 58.6 3.5 26 168-193 1-26 (194)
284 TIGR02533 type_II_gspE general 96.7 0.0098 2.1E-07 60.8 9.9 103 151-270 230-332 (486)
285 PRK12724 flagellar biosynthesi 96.7 0.019 4E-07 56.8 11.4 25 166-190 223-247 (432)
286 PRK04301 radA DNA repair and r 96.7 0.0066 1.4E-07 58.8 8.3 39 153-191 89-127 (317)
287 PF00154 RecA: recA bacterial 96.7 0.0075 1.6E-07 57.6 8.4 101 154-260 40-142 (322)
288 cd03115 SRP The signal recogni 96.7 0.019 4.2E-07 50.1 10.5 26 168-193 2-27 (173)
289 cd03230 ABC_DR_subfamily_A Thi 96.7 0.012 2.6E-07 51.5 9.2 34 166-200 26-59 (173)
290 PRK00771 signal recognition pa 96.7 0.024 5.2E-07 56.9 12.3 29 165-193 94-122 (437)
291 PRK07261 topology modulation p 96.7 0.0013 2.9E-08 57.3 3.1 23 168-190 2-24 (171)
292 PRK14722 flhF flagellar biosyn 96.6 0.025 5.4E-07 55.4 11.9 28 166-193 137-164 (374)
293 PF03308 ArgK: ArgK protein; 96.6 0.0082 1.8E-07 54.9 7.9 41 153-193 16-56 (266)
294 PTZ00035 Rad51 protein; Provis 96.6 0.0087 1.9E-07 58.2 8.7 39 153-191 105-143 (337)
295 KOG0726 26S proteasome regulat 96.6 0.033 7.1E-07 51.4 11.7 52 143-194 185-247 (440)
296 PF00437 T2SE: Type II/IV secr 96.6 0.0039 8.4E-08 59.0 6.2 118 151-286 112-231 (270)
297 PRK10923 glnG nitrogen regulat 96.6 0.23 5E-06 51.0 19.7 48 143-190 138-185 (469)
298 KOG1969 DNA replication checkp 96.6 0.007 1.5E-07 62.5 8.1 26 164-189 324-349 (877)
299 COG0465 HflB ATP-dependent Zn 96.6 0.04 8.7E-07 56.8 13.6 175 143-344 150-357 (596)
300 TIGR02655 circ_KaiC circadian 96.6 0.0082 1.8E-07 61.6 8.8 50 152-201 249-298 (484)
301 PRK10820 DNA-binding transcrip 96.6 0.045 9.7E-07 56.8 14.3 47 143-189 204-250 (520)
302 PF00910 RNA_helicase: RNA hel 96.6 0.0014 3E-08 52.3 2.4 26 169-194 1-26 (107)
303 cd02019 NK Nucleoside/nucleoti 96.6 0.0019 4.1E-08 46.9 2.9 23 168-190 1-23 (69)
304 PRK09270 nucleoside triphospha 96.6 0.0037 8.1E-08 57.4 5.6 32 163-194 30-61 (229)
305 PRK10436 hypothetical protein; 96.6 0.016 3.6E-07 58.5 10.6 103 151-270 206-308 (462)
306 TIGR02524 dot_icm_DotB Dot/Icm 96.6 0.0032 6.9E-08 61.6 5.3 97 166-270 134-233 (358)
307 PTZ00301 uridine kinase; Provi 96.6 0.003 6.5E-08 56.9 4.7 29 166-194 3-31 (210)
308 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.0029 6.2E-08 57.4 4.6 23 166-188 29-51 (213)
309 COG0488 Uup ATPase components 96.6 0.012 2.7E-07 60.4 9.7 56 242-303 450-511 (530)
310 PF00406 ADK: Adenylate kinase 96.6 0.0057 1.2E-07 52.2 6.3 87 171-269 1-94 (151)
311 PRK07132 DNA polymerase III su 96.6 0.55 1.2E-05 44.8 20.1 167 152-347 5-184 (299)
312 TIGR01069 mutS2 MutS2 family p 96.6 0.006 1.3E-07 65.9 7.7 24 166-189 322-345 (771)
313 COG4133 CcmA ABC-type transpor 96.6 0.002 4.3E-08 55.5 3.2 28 166-193 28-55 (209)
314 PRK08233 hypothetical protein; 96.6 0.002 4.3E-08 56.9 3.4 26 166-191 3-28 (182)
315 PRK05986 cob(I)alamin adenolsy 96.6 0.0074 1.6E-07 52.9 6.9 117 166-287 22-158 (191)
316 PRK11388 DNA-binding transcrip 96.6 0.065 1.4E-06 57.3 15.6 48 143-190 325-372 (638)
317 COG0529 CysC Adenylylsulfate k 96.6 0.0062 1.3E-07 51.9 6.1 35 165-199 22-56 (197)
318 PRK05480 uridine/cytidine kina 96.6 0.0024 5.2E-08 57.8 4.0 27 164-190 4-30 (209)
319 TIGR02525 plasmid_TraJ plasmid 96.5 0.0049 1.1E-07 60.5 6.3 107 167-285 150-258 (372)
320 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0042 9E-08 51.3 4.9 41 151-191 7-47 (133)
321 PRK12726 flagellar biosynthesi 96.5 0.034 7.3E-07 54.2 11.8 29 165-193 205-233 (407)
322 PF07728 AAA_5: AAA domain (dy 96.5 0.0035 7.5E-08 52.6 4.6 22 169-190 2-23 (139)
323 PRK13531 regulatory ATPase Rav 96.5 0.0026 5.6E-08 63.8 4.3 46 143-192 20-65 (498)
324 COG4608 AppF ABC-type oligopep 96.5 0.0099 2.1E-07 54.6 7.7 124 166-293 39-176 (268)
325 COG0563 Adk Adenylate kinase a 96.5 0.015 3.3E-07 50.9 8.6 23 168-190 2-24 (178)
326 COG3910 Predicted ATPase [Gene 96.5 0.02 4.3E-07 49.5 8.7 23 166-188 37-59 (233)
327 PRK05703 flhF flagellar biosyn 96.5 0.049 1.1E-06 54.7 13.1 26 166-191 221-246 (424)
328 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.014 3.1E-07 52.4 8.5 24 166-189 26-49 (200)
329 PRK05439 pantothenate kinase; 96.5 0.0073 1.6E-07 57.6 6.8 50 143-192 61-112 (311)
330 COG1875 NYN ribonuclease and A 96.5 0.011 2.4E-07 56.3 7.8 135 144-287 225-388 (436)
331 TIGR02239 recomb_RAD51 DNA rep 96.5 0.011 2.4E-07 57.0 8.1 37 153-189 83-119 (316)
332 cd03216 ABC_Carb_Monos_I This 96.5 0.007 1.5E-07 52.4 6.2 115 166-291 26-146 (163)
333 PRK10463 hydrogenase nickel in 96.5 0.015 3.3E-07 54.6 8.7 55 143-199 82-137 (290)
334 COG5635 Predicted NTPase (NACH 96.4 0.029 6.4E-07 61.6 12.3 279 167-454 223-555 (824)
335 PRK13539 cytochrome c biogenes 96.4 0.019 4.1E-07 51.8 9.1 25 166-190 28-52 (207)
336 PRK03846 adenylylsulfate kinas 96.4 0.01 2.2E-07 53.3 7.2 36 165-200 23-58 (198)
337 PRK03839 putative kinase; Prov 96.4 0.0026 5.6E-08 56.1 3.4 24 168-191 2-25 (180)
338 PLN03186 DNA repair protein RA 96.4 0.011 2.3E-07 57.5 7.8 37 153-189 110-146 (342)
339 PRK04040 adenylate kinase; Pro 96.4 0.0034 7.3E-08 55.7 4.1 25 167-191 3-27 (188)
340 TIGR02788 VirB11 P-type DNA tr 96.4 0.01 2.2E-07 57.1 7.7 108 166-287 144-253 (308)
341 TIGR00455 apsK adenylylsulfate 96.4 0.023 4.9E-07 50.3 9.3 28 165-192 17-44 (184)
342 KOG0651 26S proteasome regulat 96.4 0.029 6.4E-07 52.3 10.0 29 166-194 166-194 (388)
343 PF07726 AAA_3: ATPase family 96.4 0.002 4.3E-08 52.3 2.2 28 169-196 2-29 (131)
344 TIGR00064 ftsY signal recognit 96.4 0.035 7.7E-07 52.3 11.0 30 164-193 70-99 (272)
345 COG2805 PilT Tfp pilus assembl 96.4 0.018 4E-07 53.4 8.6 95 166-270 125-219 (353)
346 cd01122 GP4d_helicase GP4d_hel 96.4 0.044 9.6E-07 51.7 11.7 36 166-201 30-66 (271)
347 COG1136 SalX ABC-type antimicr 96.4 0.047 1E-06 49.3 11.0 60 239-301 150-215 (226)
348 cd03232 ABC_PDR_domain2 The pl 96.4 0.028 6.1E-07 50.0 9.8 24 166-189 33-56 (192)
349 COG1703 ArgK Putative periplas 96.4 0.0077 1.7E-07 55.9 6.0 43 153-195 38-80 (323)
350 PRK10867 signal recognition pa 96.4 0.05 1.1E-06 54.5 12.3 29 165-193 99-127 (433)
351 PRK00131 aroK shikimate kinase 96.4 0.0032 7E-08 55.0 3.5 26 166-191 4-29 (175)
352 TIGR00235 udk uridine kinase. 96.3 0.0038 8.2E-08 56.4 4.0 27 165-191 5-31 (207)
353 cd03213 ABCG_EPDR ABCG transpo 96.3 0.038 8.2E-07 49.3 10.4 25 166-190 35-59 (194)
354 PRK06547 hypothetical protein; 96.3 0.0063 1.4E-07 53.0 5.1 27 164-190 13-39 (172)
355 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0035 7.5E-08 55.6 3.6 26 165-190 2-27 (188)
356 COG4240 Predicted kinase [Gene 96.3 0.014 3E-07 51.8 7.0 87 164-251 48-135 (300)
357 PRK00625 shikimate kinase; Pro 96.3 0.0034 7.3E-08 54.8 3.2 24 168-191 2-25 (173)
358 TIGR02782 TrbB_P P-type conjug 96.3 0.034 7.5E-07 53.1 10.3 87 167-267 133-222 (299)
359 PRK05973 replicative DNA helic 96.3 0.0098 2.1E-07 54.4 6.2 37 165-201 63-99 (237)
360 PF03266 NTPase_1: NTPase; In 96.3 0.006 1.3E-07 52.9 4.6 24 169-192 2-25 (168)
361 PRK09302 circadian clock prote 96.3 0.015 3.2E-07 60.4 8.4 49 153-201 18-67 (509)
362 PRK12727 flagellar biosynthesi 96.3 0.028 6.1E-07 57.1 9.9 28 166-193 350-377 (559)
363 cd03254 ABCC_Glucan_exporter_l 96.3 0.049 1.1E-06 50.0 11.0 25 166-190 29-53 (229)
364 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.012 2.5E-07 50.6 6.4 116 167-292 26-145 (157)
365 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.019 4.2E-07 53.3 8.2 26 166-191 25-50 (246)
366 cd03283 ABC_MutS-like MutS-lik 96.2 0.041 8.9E-07 49.3 10.0 24 167-190 26-49 (199)
367 COG2804 PulE Type II secretory 96.2 0.046 1E-06 54.7 11.1 114 151-285 246-359 (500)
368 COG1102 Cmk Cytidylate kinase 96.2 0.004 8.6E-08 52.3 3.1 25 168-192 2-26 (179)
369 COG0467 RAD55 RecA-superfamily 96.2 0.0085 1.8E-07 56.3 5.8 46 156-201 13-58 (260)
370 TIGR03575 selen_PSTK_euk L-ser 96.2 0.017 3.7E-07 55.8 7.9 23 169-191 2-24 (340)
371 COG0396 sufC Cysteine desulfur 96.2 0.053 1.2E-06 48.5 10.2 23 166-188 30-52 (251)
372 smart00534 MUTSac ATPase domai 96.2 0.018 3.8E-07 51.0 7.5 21 168-188 1-21 (185)
373 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.0067 1.4E-07 56.8 5.0 37 165-201 35-71 (259)
374 cd03240 ABC_Rad50 The catalyti 96.2 0.035 7.5E-07 50.0 9.4 21 167-187 23-43 (204)
375 PRK00279 adk adenylate kinase; 96.2 0.03 6.4E-07 50.9 9.1 23 168-190 2-24 (215)
376 cd00227 CPT Chloramphenicol (C 96.2 0.0046 9.9E-08 54.3 3.6 25 167-191 3-27 (175)
377 KOG1051 Chaperone HSP104 and r 96.2 0.068 1.5E-06 57.6 12.9 103 143-260 562-671 (898)
378 cd02028 UMPK_like Uridine mono 96.2 0.0059 1.3E-07 53.7 4.2 26 168-193 1-26 (179)
379 PRK09519 recA DNA recombinatio 96.2 0.02 4.2E-07 61.2 8.7 101 153-259 46-148 (790)
380 cd03229 ABC_Class3 This class 96.2 0.018 3.8E-07 50.7 7.3 34 166-200 26-59 (178)
381 PRK13538 cytochrome c biogenes 96.2 0.045 9.8E-07 49.2 10.1 25 166-190 27-51 (204)
382 COG4088 Predicted nucleotide k 96.2 0.0043 9.4E-08 54.2 3.2 27 167-193 2-28 (261)
383 TIGR02538 type_IV_pilB type IV 96.2 0.032 7E-07 58.4 10.3 104 150-270 303-406 (564)
384 TIGR00959 ffh signal recogniti 96.2 0.061 1.3E-06 53.9 11.7 27 165-191 98-124 (428)
385 PTZ00088 adenylate kinase 1; P 96.2 0.033 7.2E-07 50.9 9.1 23 168-190 8-30 (229)
386 COG2274 SunT ABC-type bacterio 96.2 0.024 5.1E-07 60.5 9.2 24 166-189 499-522 (709)
387 COG1419 FlhF Flagellar GTP-bin 96.2 0.042 9.1E-07 53.6 10.1 98 166-270 203-309 (407)
388 PRK09280 F0F1 ATP synthase sub 96.1 0.035 7.5E-07 55.7 9.8 40 165-204 143-182 (463)
389 cd03278 ABC_SMC_barmotin Barmo 96.1 0.062 1.3E-06 48.0 10.6 21 168-188 24-44 (197)
390 COG1224 TIP49 DNA helicase TIP 96.1 0.0087 1.9E-07 56.7 5.1 53 143-195 39-94 (450)
391 PRK12597 F0F1 ATP synthase sub 96.1 0.033 7.2E-07 56.0 9.6 40 165-204 142-181 (461)
392 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.11 2.4E-06 46.9 12.3 24 166-189 34-57 (207)
393 COG4555 NatA ABC-type Na+ tran 96.1 0.058 1.3E-06 47.3 9.6 28 165-192 27-54 (245)
394 PRK15115 response regulator Gl 96.1 1.1 2.3E-05 45.8 20.8 47 144-190 135-181 (444)
395 TIGR01351 adk adenylate kinase 96.1 0.031 6.8E-07 50.6 8.6 22 169-190 2-23 (210)
396 PRK14528 adenylate kinase; Pro 96.1 0.032 6.9E-07 49.4 8.4 24 167-190 2-25 (186)
397 PF06068 TIP49: TIP49 C-termin 96.1 0.011 2.4E-07 56.8 5.6 54 143-196 24-80 (398)
398 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.02 4.4E-07 56.0 7.6 102 165-287 61-167 (362)
399 cd03250 ABCC_MRP_domain1 Domai 96.0 0.14 3E-06 46.1 12.5 27 165-191 30-56 (204)
400 cd03289 ABCC_CFTR2 The CFTR su 96.0 0.095 2.1E-06 49.5 11.8 26 166-191 30-55 (275)
401 PRK13947 shikimate kinase; Pro 96.0 0.0054 1.2E-07 53.5 3.2 25 168-192 3-27 (171)
402 PRK10416 signal recognition pa 96.0 0.025 5.5E-07 54.4 8.0 29 165-193 113-141 (318)
403 TIGR01039 atpD ATP synthase, F 96.0 0.038 8.2E-07 55.3 9.4 41 165-205 142-182 (461)
404 cd03253 ABCC_ATM1_transporter 96.0 0.07 1.5E-06 49.2 10.8 25 166-190 27-51 (236)
405 PRK14531 adenylate kinase; Pro 96.0 0.05 1.1E-06 48.0 9.3 24 167-190 3-26 (183)
406 PF13245 AAA_19: Part of AAA d 96.0 0.0072 1.6E-07 44.7 3.3 24 167-190 11-34 (76)
407 PF00158 Sigma54_activat: Sigm 96.0 0.0072 1.6E-07 52.4 3.8 45 145-189 1-45 (168)
408 cd03263 ABC_subfamily_A The AB 96.0 0.045 9.8E-07 49.9 9.4 25 166-190 28-52 (220)
409 PF03205 MobB: Molybdopterin g 96.0 0.011 2.3E-07 49.7 4.7 34 167-200 1-35 (140)
410 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.069 1.5E-06 49.3 10.7 25 166-190 29-53 (238)
411 cd01428 ADK Adenylate kinase ( 96.0 0.069 1.5E-06 47.5 10.3 22 169-190 2-23 (194)
412 cd03243 ABC_MutS_homologs The 96.0 0.0062 1.4E-07 54.8 3.4 22 167-188 30-51 (202)
413 PRK09302 circadian clock prote 96.0 0.028 6.1E-07 58.3 8.7 50 152-201 259-308 (509)
414 PRK15453 phosphoribulokinase; 96.0 0.011 2.4E-07 55.0 5.1 29 164-192 3-31 (290)
415 cd03233 ABC_PDR_domain1 The pl 96.0 0.08 1.7E-06 47.5 10.6 26 166-191 33-58 (202)
416 TIGR00390 hslU ATP-dependent p 96.0 0.012 2.6E-07 57.9 5.5 52 143-194 12-75 (441)
417 PRK09544 znuC high-affinity zi 95.9 0.025 5.3E-07 52.8 7.4 25 166-190 30-54 (251)
418 cd00984 DnaB_C DnaB helicase C 95.9 0.077 1.7E-06 49.1 10.7 37 165-201 12-49 (242)
419 PF13481 AAA_25: AAA domain; P 95.9 0.007 1.5E-07 53.9 3.6 26 167-192 33-58 (193)
420 cd02024 NRK1 Nicotinamide ribo 95.9 0.0053 1.1E-07 54.1 2.7 23 168-190 1-23 (187)
421 PRK09435 membrane ATPase/prote 95.9 0.022 4.7E-07 55.0 7.1 31 163-193 53-83 (332)
422 PRK13543 cytochrome c biogenes 95.9 0.061 1.3E-06 48.8 9.8 25 166-190 37-61 (214)
423 TIGR01277 thiQ thiamine ABC tr 95.9 0.054 1.2E-06 49.1 9.4 25 166-190 24-48 (213)
424 cd01858 NGP_1 NGP-1. Autoanti 95.9 0.073 1.6E-06 45.6 9.8 42 147-188 82-124 (157)
425 cd02020 CMPK Cytidine monophos 95.9 0.006 1.3E-07 51.6 3.0 24 168-191 1-24 (147)
426 cd02021 GntK Gluconate kinase 95.9 0.0055 1.2E-07 52.2 2.7 23 168-190 1-23 (150)
427 PRK14259 phosphate ABC transpo 95.9 0.11 2.4E-06 49.0 11.8 25 166-190 39-63 (269)
428 TIGR02322 phosphon_PhnN phosph 95.9 0.0066 1.4E-07 53.4 3.3 25 167-191 2-26 (179)
429 PRK13764 ATPase; Provisional 95.9 0.031 6.7E-07 58.1 8.5 85 167-267 258-342 (602)
430 COG0488 Uup ATPase components 95.9 0.056 1.2E-06 55.7 10.3 28 166-193 29-56 (530)
431 PRK05917 DNA polymerase III su 95.9 0.39 8.5E-06 45.3 15.1 126 153-304 7-154 (290)
432 PRK06217 hypothetical protein; 95.9 0.0061 1.3E-07 53.9 3.0 24 168-191 3-26 (183)
433 PRK11248 tauB taurine transpor 95.9 0.052 1.1E-06 50.8 9.4 25 166-190 27-51 (255)
434 cd02025 PanK Pantothenate kina 95.9 0.0056 1.2E-07 55.8 2.8 25 168-192 1-25 (220)
435 PHA02244 ATPase-like protein 95.9 0.024 5.3E-07 54.9 7.0 46 143-192 96-145 (383)
436 cd02023 UMPK Uridine monophosp 95.9 0.0062 1.3E-07 54.6 2.9 23 168-190 1-23 (198)
437 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.015 3.3E-07 52.9 5.4 24 165-188 30-53 (222)
438 COG1120 FepC ABC-type cobalami 95.8 0.029 6.2E-07 51.8 7.1 23 166-188 28-50 (258)
439 PRK10751 molybdopterin-guanine 95.8 0.016 3.4E-07 50.3 5.1 29 165-193 5-33 (173)
440 COG3854 SpoIIIAA ncharacterize 95.8 0.062 1.3E-06 48.1 8.8 107 168-286 139-252 (308)
441 COG1936 Predicted nucleotide k 95.8 0.007 1.5E-07 51.5 2.9 20 168-187 2-21 (180)
442 cd03215 ABC_Carb_Monos_II This 95.8 0.079 1.7E-06 46.7 9.8 26 166-191 26-51 (182)
443 PRK05537 bifunctional sulfate 95.8 0.02 4.2E-07 59.8 6.7 50 143-192 369-418 (568)
444 COG0714 MoxR-like ATPases [Gen 95.8 0.012 2.6E-07 57.3 5.0 49 143-195 24-72 (329)
445 PF13479 AAA_24: AAA domain 95.8 0.023 4.9E-07 51.6 6.4 20 167-186 4-23 (213)
446 cd03244 ABCC_MRP_domain2 Domai 95.8 0.18 3.9E-06 45.9 12.4 24 166-189 30-53 (221)
447 COG0378 HypB Ni2+-binding GTPa 95.8 0.014 3E-07 50.8 4.6 38 166-203 13-50 (202)
448 PRK14529 adenylate kinase; Pro 95.8 0.069 1.5E-06 48.5 9.3 91 169-268 3-96 (223)
449 PRK13833 conjugal transfer pro 95.8 0.032 7E-07 53.6 7.6 86 167-267 145-233 (323)
450 PF00625 Guanylate_kin: Guanyl 95.8 0.011 2.4E-07 52.2 4.2 35 166-200 2-36 (183)
451 PRK12678 transcription termina 95.8 0.027 5.9E-07 57.4 7.2 41 165-205 415-456 (672)
452 KOG0058 Peptide exporter, ABC 95.8 0.015 3.2E-07 60.3 5.5 22 167-188 495-516 (716)
453 cd00071 GMPK Guanosine monopho 95.8 0.007 1.5E-07 50.7 2.7 26 168-193 1-26 (137)
454 TIGR01425 SRP54_euk signal rec 95.8 0.15 3.2E-06 50.9 12.3 29 165-193 99-127 (429)
455 PRK14738 gmk guanylate kinase; 95.8 0.0093 2E-07 53.8 3.6 29 161-189 8-36 (206)
456 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.014 3E-07 52.5 4.7 21 167-187 29-49 (200)
457 COG3640 CooC CO dehydrogenase 95.7 0.017 3.6E-07 51.8 5.0 37 168-204 2-38 (255)
458 PRK13657 cyclic beta-1,2-gluca 95.7 0.031 6.8E-07 59.2 8.1 24 167-190 362-385 (588)
459 TIGR02868 CydC thiol reductant 95.7 0.044 9.5E-07 57.3 9.1 25 166-190 361-385 (529)
460 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.013 2.7E-07 56.2 4.4 51 143-193 61-115 (358)
461 cd02029 PRK_like Phosphoribulo 95.7 0.046 9.9E-07 50.6 7.9 26 168-193 1-26 (277)
462 KOG3347 Predicted nucleotide k 95.7 0.0093 2E-07 49.3 3.1 25 166-190 7-31 (176)
463 TIGR00554 panK_bact pantothena 95.7 0.027 5.9E-07 53.3 6.6 28 164-191 60-87 (290)
464 COG2401 ABC-type ATPase fused 95.7 0.019 4.1E-07 55.6 5.5 25 166-190 409-433 (593)
465 PRK13949 shikimate kinase; Pro 95.7 0.0089 1.9E-07 52.0 3.1 24 168-191 3-26 (169)
466 TIGR00764 lon_rel lon-related 95.7 0.019 4.2E-07 60.4 6.2 61 139-203 14-75 (608)
467 KOG1532 GTPase XAB1, interacts 95.7 0.014 3E-07 53.3 4.3 39 165-204 18-56 (366)
468 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.061 1.3E-06 53.8 9.3 27 165-191 137-163 (449)
469 TIGR02768 TraA_Ti Ti-type conj 95.7 0.078 1.7E-06 57.4 10.9 105 167-287 369-477 (744)
470 PRK12339 2-phosphoglycerate ki 95.7 0.01 2.2E-07 52.9 3.6 25 166-190 3-27 (197)
471 cd00464 SK Shikimate kinase (S 95.7 0.0096 2.1E-07 50.8 3.2 22 169-190 2-23 (154)
472 CHL00060 atpB ATP synthase CF1 95.7 0.063 1.4E-06 54.2 9.3 41 165-205 160-200 (494)
473 PRK13948 shikimate kinase; Pro 95.6 0.011 2.3E-07 52.1 3.4 28 165-192 9-36 (182)
474 PF00006 ATP-synt_ab: ATP synt 95.6 0.023 5E-07 51.3 5.6 28 166-193 15-42 (215)
475 PRK05201 hslU ATP-dependent pr 95.6 0.017 3.6E-07 57.0 5.0 51 143-193 15-77 (443)
476 PRK14530 adenylate kinase; Pro 95.6 0.0098 2.1E-07 54.1 3.3 24 167-190 4-27 (215)
477 TIGR00073 hypB hydrogenase acc 95.6 0.017 3.6E-07 52.2 4.8 30 163-192 19-48 (207)
478 PF13086 AAA_11: AAA domain; P 95.6 0.023 5E-07 52.0 5.9 37 150-190 5-41 (236)
479 PRK00409 recombination and DNA 95.6 0.048 1E-06 59.2 9.0 24 165-188 326-349 (782)
480 COG1428 Deoxynucleoside kinase 95.6 0.01 2.2E-07 52.3 3.1 26 166-191 4-29 (216)
481 PRK13765 ATP-dependent proteas 95.6 0.024 5.2E-07 59.6 6.4 60 139-202 27-87 (637)
482 TIGR01313 therm_gnt_kin carboh 95.6 0.0078 1.7E-07 52.0 2.5 22 169-190 1-22 (163)
483 PF06745 KaiC: KaiC; InterPro 95.6 0.014 3E-07 53.6 4.2 47 155-201 8-55 (226)
484 PRK11174 cysteine/glutathione 95.6 0.067 1.4E-06 56.7 9.9 25 166-190 376-400 (588)
485 PRK14527 adenylate kinase; Pro 95.6 0.012 2.7E-07 52.3 3.7 26 165-190 5-30 (191)
486 cd01135 V_A-ATPase_B V/A-type 95.6 0.082 1.8E-06 49.3 9.1 26 166-191 69-94 (276)
487 PF06309 Torsin: Torsin; Inte 95.5 0.046 9.9E-07 44.3 6.4 48 143-190 25-77 (127)
488 PRK11176 lipid transporter ATP 95.5 0.032 6.9E-07 59.0 7.2 25 166-190 369-393 (582)
489 PRK15424 propionate catabolism 95.5 0.036 7.8E-07 57.2 7.2 47 143-189 219-265 (538)
490 PF12775 AAA_7: P-loop contain 95.5 0.0099 2.1E-07 56.0 2.9 26 167-192 34-59 (272)
491 PRK13946 shikimate kinase; Pro 95.5 0.012 2.6E-07 52.0 3.3 26 166-191 10-35 (184)
492 PF06414 Zeta_toxin: Zeta toxi 95.5 0.034 7.4E-07 49.8 6.2 28 164-191 13-40 (199)
493 TIGR00176 mobB molybdopterin-g 95.5 0.018 3.8E-07 49.3 4.1 26 168-193 1-26 (155)
494 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.03 6.4E-07 51.3 5.9 48 154-201 4-51 (224)
495 PRK05342 clpX ATP-dependent pr 95.5 0.023 5E-07 56.7 5.5 50 143-192 71-134 (412)
496 PRK13900 type IV secretion sys 95.5 0.039 8.4E-07 53.5 6.9 92 166-267 160-253 (332)
497 TIGR01188 drrA daunorubicin re 95.5 0.088 1.9E-06 50.6 9.4 25 166-190 19-43 (302)
498 PLN02674 adenylate kinase 95.5 0.12 2.6E-06 47.6 9.7 25 166-190 31-55 (244)
499 PLN02200 adenylate kinase fami 95.5 0.014 3.1E-07 53.6 3.7 25 166-190 43-67 (234)
500 TIGR00041 DTMP_kinase thymidyl 95.4 0.12 2.6E-06 46.0 9.7 26 167-192 4-29 (195)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-83 Score=711.34 Aligned_cols=472 Identities=39% Similarity=0.745 Sum_probs=419.1
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCc-eEeee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQ-IFPIF 79 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~-v~Pvf 79 (483)
+|++|||+||.++||++|+|+ ++++|+.|.+++.+||++|+++|||||++|++|+|||+||++|++|++++++ |+|||
T Consensus 27 ~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvf 105 (1153)
T PLN03210 27 TFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVF 105 (1153)
T ss_pred CHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEE
Confidence 699999999999999999988 7999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccCccccccchhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHH-----------------
Q 038919 80 YDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHALKVVANISGWELKDSKIRTESEIL----------------- 142 (483)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~~i----------------- 142 (483)
|+|+|+|||+|+|+|+++|.++.... ..+++++|++||+.+++++|+... .+.+|++++
T Consensus 106 y~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~--~~~~E~~~i~~Iv~~v~~~l~~~~~~ 181 (1153)
T PLN03210 106 YGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ--NWPNEAKMIEEIANDVLGKLNLTPSN 181 (1153)
T ss_pred ecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC--CCCCHHHHHHHHHHHHHHhhccccCc
Confidence 99999999999999999999887643 356799999999999999999432 245677665
Q ss_pred --HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec--ccc---cc-----cC
Q 038919 143 --KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV--KEK---YD-----KE 210 (483)
Q Consensus 143 --~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~---~~-----~~ 210 (483)
+++|||+.+++++..+|....+++++++|+||||+||||||+++|+++...|++.+|+.+. ... .. ..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccccccc
Confidence 5789999999999999987777899999999999999999999999999999998887542 111 00 11
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 211 GSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 211 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
.....++.+++..++......... ...+++.++++++||||||||+.++++.+.....|+++|++||||||++.++
T Consensus 262 ~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred chhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 112345666666665543322222 2457788999999999999999999999988888889999999999999998
Q ss_pred hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 038919 291 KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKRE 370 (483)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~l~~~ 370 (483)
...+...+|+++.|+.++|++||+++||+...+++.+.+++++|+++|+|+||||+++|++|++++..+|+..++++...
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG 417 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 87777789999999999999999999998877777889999999999999999999999999999999999999999988
Q ss_pred CCccHHHHHHHhhcCCcH-HHHHHHhhhhcCCCCCCHHHHHHHHHhCCCChhhhHHHHhhCCceeEecCCeEEccHHHHH
Q 038919 371 PENEILDILQISFDGLKE-AEKEIFLDVACFFKGEKRDYVSKILDSCGFEPVIGIGVLIEKSLLTICESDRLWMHDLLLE 449 (483)
Q Consensus 371 ~~~~v~~~l~~s~~~L~~-~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~mH~lvr~ 449 (483)
.+..+..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++..++..+..+++.|+++|||+.. .+++.||+|+|+
T Consensus 418 ~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~ 496 (1153)
T PLN03210 418 LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQE 496 (1153)
T ss_pred ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHH
Confidence 888999999999999986 599999999999999999999999988888888899999999999987 678999999999
Q ss_pred HHHHHHhhhCCCCCCCccccccCchHHHHhccCC
Q 038919 450 MGRQIVRRQSPREPGKRSRLWEEADLCHVLSQNT 483 (483)
Q Consensus 450 ~~~~~~~~~~~~~~~~r~rl~~~~~~~~~l~~~~ 483 (483)
||++++++++ .+|++|+|+|+++||++||++++
T Consensus 497 ~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 497 MGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred HHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence 9999999998 78999999999999999998764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-41 Score=355.22 Aligned_cols=304 Identities=32% Similarity=0.425 Sum_probs=260.1
Q ss_pred hchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH---hhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 146 VGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL---ISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 146 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
||.+..++.+.+.|..... ++++|+||||+||||||++++++ +..+|+..+|+. +++ .... ..++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk---~f~~-~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSK---EFTT-RKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-Ecc---cccH-HhHHHHHHH
Confidence 9999999999999986533 89999999999999999999985 567899999987 333 3444 888888888
Q ss_pred HHhcccCCC-ccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh-CCCcceEe
Q 038919 223 DLLKLADNS-IRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKL-HRVEEVFK 300 (483)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-~~~~~~~~ 300 (483)
.+....... ..+..+....+.+.|.++|++|||||||+...|+.+..+++....||+|++|||+..++.. ++....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 765533222 2234677888999999999999999999999999999888877788999999999999988 77778899
Q ss_pred cCCCChHHHHHHHHHhhccCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC-CHHHHHHHHHHhccC-------C
Q 038919 301 LEALTYDEAFQLFCLKAFETQ-KPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR-PVDEWTSTLERLKRE-------P 371 (483)
Q Consensus 301 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~-~~~~~~~~l~~l~~~-------~ 371 (483)
++.|+.+|||.||++.++... ...+..++++++++++|+|+|||+.++|..++.+ +..+|..+...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998763 3334478999999999999999999999999884 567999999987553 1
Q ss_pred CccHHHHHHHhhcCCcHHHHHHHhhhhcCCCC--CCHHHHHHHHHhCCCC------------hhhhHHHHhhCCceeEec
Q 038919 372 ENEILDILQISFDGLKEAEKEIFLDVACFFKG--EKRDYVSKILDSCGFE------------PVIGIGVLIEKSLLTICE 437 (483)
Q Consensus 372 ~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~sLi~~~~ 437 (483)
.+.+..++..||+.|+++.|.||+|||.||.+ ++.+.+..+|.++|+. ....+.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999999988 6899999999999843 345799999999998764
Q ss_pred C----CeEEccHHHHHHHHHHHh
Q 038919 438 S----DRLWMHDLLLEMGRQIVR 456 (483)
Q Consensus 438 ~----~~~~mH~lvr~~~~~~~~ 456 (483)
. ..+.|||+||++|..++.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 2 569999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-38 Score=304.64 Aligned_cols=268 Identities=32% Similarity=0.512 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH--hhcccceeEEEEecccccccCCcHHHHHHHHHHHHh
Q 038919 148 IESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL--ISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLL 225 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (483)
|+.++++|.+.|...+++.++|+|+||||+||||||.+++++ +..+|+..+|+. +.. .... ..++..++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~---~~~~-~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSK---NPSL-EQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES----SCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-ccc---cccc-cccccccccccc
Confidence 789999999999976678999999999999999999999988 888997777765 332 2333 777888887765
Q ss_pred cccCC--CccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCC-cceEecC
Q 038919 226 KLADN--SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRV-EEVFKLE 302 (483)
Q Consensus 226 ~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~-~~~~~l~ 302 (483)
..... ...+.......+.+.+.++++|||||||++...++.+...+.....|++||||||+..+...... ...++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55332 45667778899999999999999999999999998887766666779999999999987765443 6789999
Q ss_pred CCChHHHHHHHHHhhccCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhCC-CCHHHHHHHHHHhccCC------Ccc
Q 038919 303 ALTYDEAFQLFCLKAFETQ-KPREEYVHLSQLVVNYAGGLPLALKVLGSFLFG-RPVDEWTSTLERLKREP------ENE 374 (483)
Q Consensus 303 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~-~~~~~~~~~l~~l~~~~------~~~ 374 (483)
+|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++++. .+..+|...++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987655 233344577899999999999999999999954 35678999888765432 467
Q ss_pred HHHHHHHhhcCCcHHHHHHHhhhhcCCCC--CCHHHHHHHHHhCCCCh
Q 038919 375 ILDILQISFDGLKEAEKEIFLDVACFFKG--EKRDYVSKILDSCGFEP 420 (483)
Q Consensus 375 v~~~l~~s~~~L~~~~k~~l~~la~f~~~--~~~~~l~~~~~~~~~~~ 420 (483)
+..++..||+.|+++.|.||.+||+||.+ ++.+.+..+|.++++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999987 57999999998876643
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=238.78 Aligned_cols=130 Identities=26% Similarity=0.439 Sum_probs=114.1
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCceEeeee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQIFPIFY 80 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~v~Pvf~ 80 (483)
+|++||+++|+++||+||+|++++++|+.|.+.|.+||++|+++|||||++|++|+|||+||++|++|+. .|+||||
T Consensus 41 ~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~---~ViPIFY 117 (187)
T PLN03194 41 TIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKK---RVIPIFC 117 (187)
T ss_pred cHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCC---EEEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999998742 2999999
Q ss_pred cccCcccccc-chhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHhhhc
Q 038919 81 DVEPTVVRKQ-TTSFGEAFTKHEEFFRDNIEKVQKWRHALKVVANISGWELKDSKIRTESEILKELVG 147 (483)
Q Consensus 81 ~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~~i~~~vG 147 (483)
+|+|++||+| .|. ...+++++|++||+.+++++|+.... ..+++++++...|+
T Consensus 118 ~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~-~~~~e~e~i~~iv~ 171 (187)
T PLN03194 118 DVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS-LKGNWSEVVTMASD 171 (187)
T ss_pred cCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC-CCCCHHHHHHHHHH
Confidence 9999999997 332 12467999999999999999984432 24568888876664
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.77 E-value=7.5e-17 Score=178.81 Aligned_cols=292 Identities=16% Similarity=0.176 Sum_probs=185.6
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..+|-|..-++.+.. ....+++.|+|++|.||||++.+++++. +.+.|+ .+...... ...+...++.
T Consensus 14 ~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~-~l~~~d~~---~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWY-SLDESDNQ---PERFASYLIA 80 (903)
T ss_pred cccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEE-ecCcccCC---HHHHHHHHHH
Confidence 467778766665543 2346899999999999999999998642 345666 34432221 1333344444
Q ss_pred HHhcccCC------------CccchhhhHHHHHHHHh--cCceEEEEcCCCCH------HHHHHHhcCCCCCCCCcEEEE
Q 038919 223 DLLKLADN------------SIRNVYDGINMIGRRLR--QKKVLLVIDDVAHV------EQLRRLAGKRDWFGPGSRIII 282 (483)
Q Consensus 223 ~~~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~ili 282 (483)
.+...... ...+.......+...+. +.+++|||||+... +.+..++... .++.++||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~ 157 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVV 157 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEE
Confidence 43211110 01122223333333333 68999999999543 2444444442 56788989
Q ss_pred EcCCHhHHhh---CCCcceEecC----CCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC
Q 038919 283 TTRDEHLLKL---HRVEEVFKLE----ALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR 355 (483)
Q Consensus 283 TtR~~~~~~~---~~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~ 355 (483)
|||....... .......++. +|+.+|+.+||....+.. ...+.+.++++.|+|+|+++..++..+...
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9997422211 0112344555 999999999998765332 123557889999999999999998777543
Q ss_pred CHHHHHHHHHHhccCCCccHHHHHHH-hhcCCcHHHHHHHhhhhcCCCCCCHHHHHHHHHhCCCChhhhHHHHhhCCcee
Q 038919 356 PVDEWTSTLERLKREPENEILDILQI-SFDGLKEAEKEIFLDVACFFKGEKRDYVSKILDSCGFEPVIGIGVLIEKSLLT 434 (483)
Q Consensus 356 ~~~~~~~~l~~l~~~~~~~v~~~l~~-s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~ 434 (483)
... .......+....+..+...+.. .++.||++.+.++..+|+++ .++.+.+..+.. ..+....++.|.+.+|+.
T Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 233 NSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFI 308 (903)
T ss_pred CCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCee
Confidence 210 1111222222223456665544 48999999999999999986 777776666653 334578899999999965
Q ss_pred E-ec--CCeEEccHHHHHHHHHHHhhhC
Q 038919 435 I-CE--SDRLWMHDLLLEMGRQIVRRQS 459 (483)
Q Consensus 435 ~-~~--~~~~~mH~lvr~~~~~~~~~~~ 459 (483)
. .+ ..+|++|++++++.++.+..+.
T Consensus 309 ~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 309 QRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred EeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 3 22 2379999999999999986553
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.75 E-value=6.5e-19 Score=149.33 Aligned_cols=119 Identities=39% Similarity=0.618 Sum_probs=103.5
Q ss_pred chhhHHHHHHhC--CCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCC--c-eE
Q 038919 2 FISHLYTALNDK--GIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNRED--Q-IF 76 (483)
Q Consensus 2 f~~~L~~~L~~~--gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~--~-v~ 76 (483)
|+++|..+|++. |+++|++++++.+|..+.+++.++|++|+++|+|||++|++|.||+.|+..++++....+ . |+
T Consensus 14 ~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il 93 (141)
T PF01582_consen 14 FVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLIL 93 (141)
T ss_dssp HHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhcccccccccee
Confidence 789999999999 999999999999999999999999999999999999999999999999999999987755 4 99
Q ss_pred eeeecccCcccc-ccchhhhhhhhhhHHHhhhh--HHHHHHHHHHHH
Q 038919 77 PIFYDVEPTVVR-KQTTSFGEAFTKHEEFFRDN--IEKVQKWRHALK 120 (483)
Q Consensus 77 Pvf~~v~p~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~al~ 120 (483)
|+||++.+.+++ .+.+.+...+..+.....+. .+....|++++.
T Consensus 94 ~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 94 PVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp EESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred eEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 999999999999 68888888887765555443 456778887653
No 7
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.65 E-value=4.4e-15 Score=159.41 Aligned_cols=325 Identities=16% Similarity=0.228 Sum_probs=197.4
Q ss_pred hhhchhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccc---ccCCcHHHHHHH
Q 038919 144 ELVGIESRLEKLKFLMGAG-CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKY---DKEGSVISLQKQ 219 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~l~~~ 219 (483)
.++||+.+++.|...+... .+...++.+.|.+|||||+|+.++...+...+ ..++...-... .+...+....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988763 33467999999999999999999999877652 22221111111 111122233333
Q ss_pred HHHHHhcccCCCc----------------------------------------cchhh-----hHHHHHHHHh-cCceEE
Q 038919 220 LISDLLKLADNSI----------------------------------------RNVYD-----GINMIGRRLR-QKKVLL 253 (483)
Q Consensus 220 ll~~~~~~~~~~~----------------------------------------~~~~~-----~~~~l~~~l~-~~~~Ll 253 (483)
+..+++....... ..... ....+..... .+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3333222111000 00000 1112222223 469999
Q ss_pred EEcCCC--CH---HHHHHHhcCCC--CC-CCCcEEEEEcCCH--hHHhhCCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 254 VIDDVA--HV---EQLRRLAGKRD--WF-GPGSRIIITTRDE--HLLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 254 VlDdv~--~~---~~~~~l~~~~~--~~-~~~~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
|+||+. |. .-++.++.... .+ ......+.|.+.. .+.......+.+.|.||+..+...+...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999993 22 33444443321 00 0112222333322 222233345689999999999999999888553322
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHHHHHhCCC-------CHHHHHHHHHHhccCC-CccHHHHHHHhhcCCcHHHHHHHh
Q 038919 324 REEYVHLSQLVVNYAGGLPLALKVLGSFLFGR-------PVDEWTSTLERLKREP-ENEILDILQISFDGLKEAEKEIFL 395 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~-------~~~~~~~~l~~l~~~~-~~~v~~~l~~s~~~L~~~~k~~l~ 395 (483)
..+..+.|++++.|||+++.++-..+... +...|..-...+.... ...+.+.+...++.||...|+++.
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23668899999999999999999988653 3445655544443321 233666799999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHhCCCChhhhHHHHhhCCceeEec--------CCe--E-EccHHHHHHHHHHHhhhCCCCCC
Q 038919 396 DVACFFKGEKRDYVSKILDSCGFEPVIGIGVLIEKSLLTICE--------SDR--L-WMHDLLLEMGRQIVRRQSPREPG 464 (483)
Q Consensus 396 ~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~~--~-~mH~lvr~~~~~~~~~~~~~~~~ 464 (483)
.+||+++.|+.+.+..++..........+-.....++|...+ ... | ..|++||+.+...+.++.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~~----- 390 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPESQ----- 390 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchhh-----
Confidence 999999999999999998754433333344444445554321 111 2 469999999987766543
Q ss_pred CccccccCchHHHHhcc
Q 038919 465 KRSRLWEEADLCHVLSQ 481 (483)
Q Consensus 465 ~r~rl~~~~~~~~~l~~ 481 (483)
|--.|..|...|..
T Consensus 391 ---rq~~H~~i~~lL~~ 404 (849)
T COG3899 391 ---RQYLHLRIGQLLEQ 404 (849)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 33445555555543
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=9.8e-13 Score=131.76 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=166.5
Q ss_pred HhhhchhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc-ceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG--CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-DGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
+.|+||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+.... ...+.+.++.... .. ..++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~---~~-~~~~~~ 105 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR---TR-YAIFSE 105 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC---CH-HHHHHH
Confidence 57999999999999988542 23346688999999999999999999876554 2223333333222 22 566667
Q ss_pred HHHHHhcccC-CCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH------HHHHHhcCCCCCC-CCcEEEEEcCCHhH
Q 038919 220 LISDLLKLAD-NSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE------QLRRLAGKRDWFG-PGSRIIITTRDEHL 289 (483)
Q Consensus 220 ll~~~~~~~~-~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~-~~~~iliTtR~~~~ 289 (483)
++..+.+... ....+.......+.+.+. +++++||||+++... .+..+........ .+..+|.++.+..+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 7776654221 122234555566666665 456899999997643 4555544322111 12335555554432
Q ss_pred HhhC-------CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHh----CCChHHHHHHHHHh-----C
Q 038919 290 LKLH-------RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYA----GGLPLALKVLGSFL-----F 353 (483)
Q Consensus 290 ~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~la~~l-----~ 353 (483)
.... -....+.+++++.++..+++..++.....+.....+.++.+++.+ |..+.|+..+-... .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 112467899999999999998876322111111223344444444 55667776654322 1
Q ss_pred C---CCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCC----CCCCHHHHHHH----HHhCCCC---
Q 038919 354 G---RPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFF----KGEKRDYVSKI----LDSCGFE--- 419 (483)
Q Consensus 354 ~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~----~~~~~~~l~~~----~~~~~~~--- 419 (483)
+ -+...+..+.... -.......+..||.++|.++..++... ..++...+... ....+..
T Consensus 266 ~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~ 338 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRT 338 (394)
T ss_pred CCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCc
Confidence 1 1344455555544 123345678899999999998877553 23444444322 2222222
Q ss_pred ---hhhhHHHHhhCCceeEe
Q 038919 420 ---PVIGIGVLIEKSLLTIC 436 (483)
Q Consensus 420 ---~~~~l~~L~~~sLi~~~ 436 (483)
....+..|...|||...
T Consensus 339 ~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 339 HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHHhcCCeEEE
Confidence 34578999999999864
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.57 E-value=4e-13 Score=137.33 Aligned_cols=294 Identities=19% Similarity=0.220 Sum_probs=189.6
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
.+.|-|..-++.|.+. .+.+.+.|..|+|.|||||+.+++.. ...-..+.|+. +.+. .+-.......++.
T Consensus 19 ~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls-lde~---dndp~rF~~yLi~ 88 (894)
T COG2909 19 DNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS-LDES---DNDPARFLSYLIA 88 (894)
T ss_pred ccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee-cCCc---cCCHHHHHHHHHH
Confidence 5677777666665542 34799999999999999999999983 33445566665 3322 2222555555555
Q ss_pred HHhcccCCC------------ccchhhhHHHHHHHHh--cCceEEEEcCCC---CH---HHHHHHhcCCCCCCCCcEEEE
Q 038919 223 DLLKLADNS------------IRNVYDGINMIGRRLR--QKKVLLVIDDVA---HV---EQLRRLAGKRDWFGPGSRIII 282 (483)
Q Consensus 223 ~~~~~~~~~------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~---~~---~~~~~l~~~~~~~~~~~~ili 282 (483)
.+....+.. ..+....+..+...+. .+|+.+||||.. ++ ..++.|+... +++..+++
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv 165 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVV 165 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEE
Confidence 543222111 1233334445555444 479999999994 22 4566666654 57899999
Q ss_pred EcCCHhHHhhCC---CcceEecC----CCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC
Q 038919 283 TTRDEHLLKLHR---VEEVFKLE----ALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR 355 (483)
Q Consensus 283 TtR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~ 355 (483)
|||+...+.... .+..++++ .|+.+|+.++|...... +.....++.+.+.++|.+-||..++-.+++.
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 999764322111 12233443 48999999999877522 1223458889999999999999998888732
Q ss_pred -CHHHHHHHHHHhccCCCccHHH-HHHHhhcCCcHHHHHHHhhhhcCCCCCCHHHHHHHHHhCCCChhhhHHHHhhCCce
Q 038919 356 -PVDEWTSTLERLKREPENEILD-ILQISFDGLKEAEKEIFLDVACFFKGEKRDYVSKILDSCGFEPVIGIGVLIEKSLL 433 (483)
Q Consensus 356 -~~~~~~~~l~~l~~~~~~~v~~-~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi 433 (483)
+...- ...+... ...+.+ ..+.-++.||++.|.++..+|++. .+..+....+. ...+....|++|.+++|.
T Consensus 241 ~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Lt--g~~ng~amLe~L~~~gLF 313 (894)
T COG2909 241 TSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALT--GEENGQAMLEELERRGLF 313 (894)
T ss_pred CcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHh--cCCcHHHHHHHHHhCCCc
Confidence 22211 1111111 223333 445678999999999999999974 23333333333 234456679999999997
Q ss_pred eE---ecCCeEEccHHHHHHHHHHHhhhCCC
Q 038919 434 TI---CESDRLWMHDLLLEMGRQIVRRQSPR 461 (483)
Q Consensus 434 ~~---~~~~~~~mH~lvr~~~~~~~~~~~~~ 461 (483)
-+ +++++|++|.++.+|.+...+.+.+.
T Consensus 314 l~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~ 344 (894)
T COG2909 314 LQRLDDEGQWFRYHHLFAEFLRQRLQRELAA 344 (894)
T ss_pred eeeecCCCceeehhHHHHHHHHhhhccccCC
Confidence 53 23678999999999999999876543
No 10
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.55 E-value=2.3e-14 Score=121.57 Aligned_cols=119 Identities=41% Similarity=0.677 Sum_probs=95.6
Q ss_pred chhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhc-CCc-eEeee
Q 038919 2 FISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNR-EDQ-IFPIF 79 (483)
Q Consensus 2 f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~-~~~-v~Pvf 79 (483)
|+.+|.++|...|+.+|.|++....|. . .+|.++|++|+++|+|+|++|..|.||..|+..++.+... ... +|||+
T Consensus 18 ~v~~L~~~l~~~~~~v~~d~~~~~~~~-~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~ 95 (140)
T smart00255 18 FLSHLLEKLRGYGLCVFIDDFEPGGGD-L-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIF 95 (140)
T ss_pred HHHHHHHHhhcCCcEEEecCcccccch-H-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 788999999999999999985433333 3 4999999999999999999999999999999999987765 345 99999
Q ss_pred ecccCccccccchhhhhhhhhhHHHhhhhHHHHHHHHHHHHHHh
Q 038919 80 YDVEPTVVRKQTTSFGEAFTKHEEFFRDNIEKVQKWRHALKVVA 123 (483)
Q Consensus 80 ~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 123 (483)
++..|..+..+.+.+...+..+..+....... ..|++.+..+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 96 YEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred EecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 99999889888888888887763333333222 67888776553
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.52 E-value=8.3e-13 Score=127.47 Aligned_cols=274 Identities=17% Similarity=0.125 Sum_probs=153.7
Q ss_pred HhhhchhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG---CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..|||++..++.|..++... ....+.+.|+|++|+|||+||+.+++.+...+ ........ .. ......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~~~~----~~-~~~l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSGPAL----EK-PGDLAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEeccchh----cC-chhHHH
Confidence 57999999999999888631 22355688999999999999999999775432 11111000 00 111111
Q ss_pred HHHHHhcccCCCccch----hhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhC--
Q 038919 220 LISDLLKLADNSIRNV----YDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLH-- 293 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~-- 293 (483)
.+..+....-.-.++. ....+.+...+.+.+..+|+++..+..++... ..+.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111100000000000 00111222223333333333333222222111 12344455667754332211
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHHhcc--CC
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKR--EP 371 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~l~~--~~ 371 (483)
.....+.+++++.++..+++.+.+..... ....+.+..|++.|+|.|..+..++..+. ... ..... ..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a-~~~~~~~it 218 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVR-------DFA-QVRGQKIIN 218 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHH-HHcCCCCcC
Confidence 12346789999999999999988754322 23346778899999999977765554331 000 00000 00
Q ss_pred C---ccHHHHHHHhhcCCcHHHHHHHh-hhhcCCC-CCCHHHHHHHHHhCCCChhhhHH-HHhhCCceeEecCCeE
Q 038919 372 E---NEILDILQISFDGLKEAEKEIFL-DVACFFK-GEKRDYVSKILDSCGFEPVIGIG-VLIEKSLLTICESDRL 441 (483)
Q Consensus 372 ~---~~v~~~l~~s~~~L~~~~k~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~~ 441 (483)
. ......+...+..+++.++..|. .++.+.. +++.+.+...+..+.......++ .|++++||...+.|++
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 0 11122245567889998888887 4455543 37888888888888888888888 6999999986655553
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=2e-11 Score=121.04 Aligned_cols=284 Identities=15% Similarity=0.112 Sum_probs=161.3
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc-----eeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-----GSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~ 215 (483)
+.|+||+.++++|...+.. .....+.+.|+|++|+|||++++.+++.+..... ..+.+.++.... .. ..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~---~~-~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD---TL-YQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC---CH-HH
Confidence 4799999999999998864 1233567999999999999999999987754322 233333333222 22 56
Q ss_pred HHHHHHHHHhc--ccCC-CccchhhhHHHHHHHHh--cCceEEEEcCCCCH-----HHHHHHhcCC--CCC-CCCcEEEE
Q 038919 216 LQKQLISDLLK--LADN-SIRNVYDGINMIGRRLR--QKKVLLVIDDVAHV-----EQLRRLAGKR--DWF-GPGSRIII 282 (483)
Q Consensus 216 l~~~ll~~~~~--~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~-----~~~~~l~~~~--~~~-~~~~~ili 282 (483)
++..++..+.. .... ...+..+....+.+.+. +++++||||+++.. +.+..+.... ... +....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 66666666542 1111 11223344445555553 56789999999765 2233443321 111 12334555
Q ss_pred EcCCHhHHhhC------C-CcceEecCCCChHHHHHHHHHhhcc---CCCCCchHHHHHHHHHHHhCCChHHHHHHHHH-
Q 038919 283 TTRDEHLLKLH------R-VEEVFKLEALTYDEAFQLFCLKAFE---TQKPREEYVHLSQLVVNYAGGLPLALKVLGSF- 351 (483)
Q Consensus 283 TtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~- 351 (483)
++......... . ....+.++|++.++..+++..++.. .....+...+.+..++..+.|.|..+..+...
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55433321111 1 1246889999999999999988641 11222333345566777778988544332211
Q ss_pred h-----CC---CCHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCC----CCCHHHHHH----HHHh
Q 038919 352 L-----FG---RPVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFK----GEKRDYVSK----ILDS 415 (483)
Q Consensus 352 l-----~~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~----~~~~~~l~~----~~~~ 415 (483)
. .+ -+......+...+. ......++..||.+++.++..++.... .+....+.. +...
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 11 12333444433331 234456778999999988877664321 233333332 1111
Q ss_pred CCC------ChhhhHHHHhhCCceeEec
Q 038919 416 CGF------EPVIGIGVLIEKSLLTICE 437 (483)
Q Consensus 416 ~~~------~~~~~l~~L~~~sLi~~~~ 437 (483)
.+. .....+..|...|||+...
T Consensus 324 ~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 324 IGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred cCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 121 1344689999999999753
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.47 E-value=1.3e-12 Score=126.99 Aligned_cols=259 Identities=19% Similarity=0.156 Sum_probs=154.7
Q ss_pred HHhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
...|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. ...... .. . ...+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~-~~---~-~~~l~ 94 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPA-LE---K-PGDLA 94 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEeccc-cc---C-hHHHH
Confidence 47899999999999887753 2233567899999999999999999998764321 111100 00 0 11111
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH--HHHHHhcCCC-------------------CCCCC
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE--QLRRLAGKRD-------------------WFGPG 277 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~~ 277 (483)
.++..+ +...+|++|+++... ..+.+...+. ...+.
T Consensus 95 ~~l~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 95 AILTNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHHhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 111111 223456666664221 1111110000 00223
Q ss_pred cEEEEEcCCHhHHhhC--CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCC
Q 038919 278 SRIIITTRDEHLLKLH--RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGR 355 (483)
Q Consensus 278 ~~iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~ 355 (483)
+-|..|++...+.... .....+++++++.++..+++.+.+...... ...+.+..|++.|+|.|-.+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH--
Confidence 4455566644332211 123468999999999999999887554322 3346789999999999976665554331
Q ss_pred CHHHHHHHHHHhccCCC---ccHHHHHHHhhcCCcHHHHHHHh-hhhcCCC-CCCHHHHHHHHHhCCCChhhhHH-HHhh
Q 038919 356 PVDEWTSTLERLKREPE---NEILDILQISFDGLKEAEKEIFL-DVACFFK-GEKRDYVSKILDSCGFEPVIGIG-VLIE 429 (483)
Q Consensus 356 ~~~~~~~~l~~l~~~~~---~~v~~~l~~s~~~L~~~~k~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~ 429 (483)
.|.... .-..... ......+...+..|++..+..+. .+..|.. ++..+.+...+..+....+..++ .|++
T Consensus 228 ---~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 228 ---DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ---HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 111110 0000001 11223345567789999988886 5566654 47899999988887777787888 9999
Q ss_pred CCceeEecCCe
Q 038919 430 KSLLTICESDR 440 (483)
Q Consensus 430 ~sLi~~~~~~~ 440 (483)
.+||+..+.|+
T Consensus 304 ~~li~~~~~gr 314 (328)
T PRK00080 304 QGFIQRTPRGR 314 (328)
T ss_pred cCCcccCCchH
Confidence 99998665554
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.47 E-value=1.6e-13 Score=127.09 Aligned_cols=194 Identities=23% Similarity=0.238 Sum_probs=102.4
Q ss_pred hhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH----
Q 038919 145 LVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL---- 220 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l---- 220 (483)
|+||+.+++.|.+++..+ ..+.+.|+|+.|+|||+|++++.+.........+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~------~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN------ESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh------hhHHHHHHHHH
Confidence 799999999999998853 3478999999999999999999998854433334443222111 1111111
Q ss_pred ------HHHHhcccC---------CCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH-----------HHHHHhcCCC
Q 038919 221 ------ISDLLKLAD---------NSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE-----------QLRRLAGKRD 272 (483)
Q Consensus 221 ------l~~~~~~~~---------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~~~~l~~~~~ 272 (483)
...+..... ............+.+.+. +++++||+||++... .+..+.....
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 111111100 011222233333444443 345999999995433 2233333322
Q ss_pred CCCCCcEEEEEcCCHhHHhh--------CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH
Q 038919 273 WFGPGSRIIITTRDEHLLKL--------HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA 344 (483)
Q Consensus 273 ~~~~~~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 344 (483)
. .....+++++........ .+....+.|++|+.+++.+++.......... +...+..++++..+||+|..
T Consensus 153 ~-~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 153 S-QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHH
T ss_pred c-cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHH
Confidence 1 334445555554444332 2233459999999999999998865333111 12446679999999999999
Q ss_pred HHHH
Q 038919 345 LKVL 348 (483)
Q Consensus 345 l~~l 348 (483)
|..+
T Consensus 231 l~~~ 234 (234)
T PF01637_consen 231 LQEL 234 (234)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8753
No 15
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.30 E-value=3.3e-12 Score=121.33 Aligned_cols=283 Identities=20% Similarity=0.266 Sum_probs=191.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
..+.+.++|.|||||||++-++.. +...|...+++.++....++... ...+... +.. ...+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v----~~~~ag~-~gl---~~~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV----FPTLAGA-LGL---HVQPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHh----HHHHHhh-ccc---ccccchHHHHHHHH
Confidence 357899999999999999999999 88899999999888877665333 1111111 111 12222233445667
Q ss_pred HHhcCceEEEEcCCCCH-HHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCCcceEecCCCChH-HHHHHHHHhhccCC-
Q 038919 245 RLRQKKVLLVIDDVAHV-EQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRVEEVFKLEALTYD-EAFQLFCLKAFETQ- 321 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~-~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~- 321 (483)
...+++.++|+||.... ++...+...+...++...++.|+|.... ......+.+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 77899999999999765 3333333333333567778999996532 234556788888876 78899877653322
Q ss_pred --CCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHH----hccC------CCccHHHHHHHhhcCCcHH
Q 038919 322 --KPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLER----LKRE------PENEILDILQISFDGLKEA 389 (483)
Q Consensus 322 --~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~----l~~~------~~~~v~~~l~~s~~~L~~~ 389 (483)
............|.+...|.|++|+.+++..+.....+....+.. +... ........+..||.-|+..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 112233456788999999999999999999887665554443332 2222 1345667889999999999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHhCC-----CChhhhHHHHhhCCceeEec---CCeEEccHHHHHHHHHHHhhhC
Q 038919 390 EKEIFLDVACFFKGEKRDYVSKILDSCG-----FEPVIGIGVLIEKSLLTICE---SDRLWMHDLLLEMGRQIVRRQS 459 (483)
Q Consensus 390 ~k~~l~~la~f~~~~~~~~l~~~~~~~~-----~~~~~~l~~L~~~sLi~~~~---~~~~~mH~lvr~~~~~~~~~~~ 459 (483)
++-.+..++.|...|..+.......... +.....+..|++++++...+ .-+|+.-.-++.|+.+.+.+..
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988874333322222 22344577889999987653 2246677777777777766543
No 16
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=6.7e-11 Score=103.21 Aligned_cols=142 Identities=25% Similarity=0.358 Sum_probs=85.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc-----eeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD-----GSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
|++.|+|.+|+||||+++.++..+..... ...++...+........ ..+...+...... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~----~~~~~~~~~-- 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPE----SIAPIEELL-- 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhcc----chhhhHHHH--
Confidence 57899999999999999999988765542 23444444433332221 1232222222211 111111111
Q ss_pred HHHHHhcCceEEEEcCCCCHHH-------------HHHHhcCCCCCCCCcEEEEEcCCHhH---HhhCCCcceEecCCCC
Q 038919 242 IGRRLRQKKVLLVIDDVAHVEQ-------------LRRLAGKRDWFGPGSRIIITTRDEHL---LKLHRVEEVFKLEALT 305 (483)
Q Consensus 242 l~~~l~~~~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~iliTtR~~~~---~~~~~~~~~~~l~~L~ 305 (483)
.......++++||||++|.... +..+... ...++++++||+|.... .........+.+.+|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1112257899999999964322 2223322 12578999999998655 2233344579999999
Q ss_pred hHHHHHHHHHhh
Q 038919 306 YDEAFQLFCLKA 317 (483)
Q Consensus 306 ~~ea~~L~~~~~ 317 (483)
.++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997765
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=1.4e-09 Score=102.93 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=103.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+.+.|+|++|+|||||++.+++.+...-...+++.+ ..... ..+...+...+ +.... ..+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~-~~~l~~i~~~l-G~~~~-~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDA-EDLLRMVAADF-GLETE-GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCH-HHHHHHHHHHc-CCCCC-CCCHHHHHHHHHHH
Confidence 4689999999999999999999876532111122221 11122 45555555543 22211 12222222223222
Q ss_pred -----HhcCceEEEEcCCCCH--HHHHHH---hcCCCCCCCCcEEEEEcCCHhHHhhC----------CCcceEecCCCC
Q 038919 246 -----LRQKKVLLVIDDVAHV--EQLRRL---AGKRDWFGPGSRIIITTRDEHLLKLH----------RVEEVFKLEALT 305 (483)
Q Consensus 246 -----l~~~~~LlVlDdv~~~--~~~~~l---~~~~~~~~~~~~iliTtR~~~~~~~~----------~~~~~~~l~~L~ 305 (483)
..+++.+||+||++.. ..++.+ ............|++|.... ..... .....+.+++|+
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2578899999999753 333333 22211112233455665432 21111 113457899999
Q ss_pred hHHHHHHHHHhhccCC--CCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 306 YDEAFQLFCLKAFETQ--KPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 306 ~~ea~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
.+|..+++...+.... ....-..+..+.|++.++|+|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987764322 1122345788999999999999999988775
No 18
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.24 E-value=7.1e-12 Score=99.86 Aligned_cols=76 Identities=34% Similarity=0.534 Sum_probs=64.3
Q ss_pred CchhhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEeccccccchhhHHHHHHHHHHHhcCCc-eEeee
Q 038919 1 TFISHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYASSTWCLDELVKIVEYKNREDQ-IFPIF 79 (483)
Q Consensus 1 ~f~~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~s~~cl~El~~~~~~~~~~~~-v~Pvf 79 (483)
.|+..|.+.|+++|+++|+|. +++.|+++...|.++|++|+..|+++|++|..|.||..|+..+.+ .+. ++||.
T Consensus 11 ~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~~iipv~ 85 (102)
T PF13676_consen 11 EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGKPIIPVR 85 (102)
T ss_dssp CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSESEEEEE
T ss_pred HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCCEEEEEE
Confidence 367899999999999999997 999999999999999999999999999999999999999998733 455 99998
Q ss_pred ec
Q 038919 80 YD 81 (483)
Q Consensus 80 ~~ 81 (483)
.+
T Consensus 86 ~~ 87 (102)
T PF13676_consen 86 LD 87 (102)
T ss_dssp CS
T ss_pred EC
Confidence 54
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.19 E-value=3e-09 Score=100.76 Aligned_cols=233 Identities=20% Similarity=0.270 Sum_probs=133.9
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
.+++|-...+. +++. ++......+||+||+||||||+.++......|...--+. .+. .++
T Consensus 30 ~HLlg~~~~lr---r~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gv-kdl------ 89 (436)
T COG2256 30 EHLLGEGKPLR---RAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGV-KDL------ 89 (436)
T ss_pred HhhhCCCchHH---HHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccH-HHH------
Confidence 45555544444 4444 345678899999999999999999997766653211110 111 111
Q ss_pred HHhcccCCCccchhhhHHHH-HHHHhcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEE--EcCCHhHH---hhCC
Q 038919 223 DLLKLADNSIRNVYDGINMI-GRRLRQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIII--TTRDEHLL---KLHR 294 (483)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~ili--TtR~~~~~---~~~~ 294 (483)
...++.- +....+++++|++|.|. +..|-+.|++.+. .|..|+| ||-|+... ....
T Consensus 90 -------------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 90 -------------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred -------------HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhh
Confidence 1111112 22345889999999995 5677778887754 5666665 77776431 1223
Q ss_pred CcceEecCCCChHHHHHHHHHhhccCCC-----CCchHHHHHHHHHHHhCCChHHHH---HHHHHhC-CC---CHHHHHH
Q 038919 295 VEEVFKLEALTYDEAFQLFCLKAFETQK-----PREEYVHLSQLVVNYAGGLPLALK---VLGSFLF-GR---PVDEWTS 362 (483)
Q Consensus 295 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~-----~~~~~~~~~~~i~~~~~G~PLal~---~la~~l~-~~---~~~~~~~ 362 (483)
...++.+++|+.++-.+++.+.+..... .....++..+.++..++|---..- .++..+. .. ..+..++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 5578999999999999999884322111 111234567778899988764332 2222222 22 2344444
Q ss_pred HHHHhcc------CCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCCCCCHHHHHHH
Q 038919 363 TLERLKR------EPENEILDILQISFDGLKEAEKEIFLDVACFFKGEKRDYVSKI 412 (483)
Q Consensus 363 ~l~~l~~------~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~ 412 (483)
.+.+-.. ....++...|..|+.+=++.+.. ..++=++-.|.++.++.+.
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAAL-yylARmi~~GeDp~yiARR 288 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAAL-YYLARMIEAGEDPLYIARR 288 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHH-HHHHHHHhcCCCHHHHHHH
Confidence 4443211 11245677778888877665532 2222233344545555443
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.07 E-value=1.3e-08 Score=99.86 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=111.0
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc-ceeEEEEecccccccCCcHHHHH
Q 038919 139 SEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-DGSSFLADVKEKYDKEGSVISLQ 217 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 217 (483)
|.....++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+.... ...+...++........ ..+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhh
Confidence 333468999999999999988743 345688999999999999999998775332 22222222222111000 0000
Q ss_pred H--HHHHHHhccc-CCCccchhhhHHHHHHHHh-----cCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 218 K--QLISDLLKLA-DNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 218 ~--~ll~~~~~~~-~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
. .... ..+.. .............+..... ..+-+||+||++.. .....+...+......+++|+|+.++
T Consensus 87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 87 EDPRFAH-FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cCcchhh-hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 0000 00000 0000011111111111111 33458999999643 22333333332234567788777543
Q ss_pred h-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 288 H-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 288 ~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
. +... ......+++.+++.++...++...+...... -..+.++.+++.++|++-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2221 1234578899999999999998876443322 2346788899999998766544
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.06 E-value=2e-08 Score=100.67 Aligned_cols=177 Identities=25% Similarity=0.345 Sum_probs=107.3
Q ss_pred HHhhhchhHHHHH---HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 142 LKELVGIESRLEK---LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 142 i~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
...+||.+..+.. +.+++... ..+.+.|+|++|+||||||+.+++.....|.. +. . .. .+ ..-..
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-a--~~--~~--~~~ir 78 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-A--VT--SG--VKDLR 78 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-c--cc--cc--HHHHH
Confidence 4678999888766 77777643 45678899999999999999999876544311 11 1 00 01 11111
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHH-HHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEE--EcCCHhHH---
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGR-RLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIII--TTRDEHLL--- 290 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili--TtR~~~~~--- 290 (483)
.++.. ... ...+++.+|+||+++.. .+.+.++..+. .+..++| ||.++...
T Consensus 79 ~ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 11111 111 11357789999999743 45555655543 2444444 34443211
Q ss_pred hhCCCcceEecCCCChHHHHHHHHHhhccCCCCC-chHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 291 KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPR-EEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
........+.+.+++.++...++.+.+....... ....+..+.+++.++|.|..+..+...
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1122336789999999999999988653311111 233467788999999999877554433
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.04 E-value=2.8e-08 Score=103.31 Aligned_cols=281 Identities=15% Similarity=0.122 Sum_probs=149.7
Q ss_pred HhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-----cc-eeEEEEecccccccCCcH
Q 038919 143 KELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FD-GSSFLADVKEKYDKEGSV 213 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~ 213 (483)
+.++||+.|+++|...|.. ++....++.|+|++|+|||++++.+.+++... .+ ..+...++......
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp---- 830 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP---- 830 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH----
Confidence 5789999999999988764 22334577899999999999999999876432 12 22333433322222
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh---cCceEEEEcCCCCH-----HHHHHHhcCCCCCCCCcEEEE--E
Q 038919 214 ISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR---QKKVLLVIDDVAHV-----EQLRRLAGKRDWFGPGSRIII--T 283 (483)
Q Consensus 214 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~ili--T 283 (483)
..+...+..++.+...............+...+. +...+||||+++.. +.+-.|+.... ..+++|++ +
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGI 908 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEe
Confidence 4455555555544333222233334444444432 23469999999743 22333333221 23444433 3
Q ss_pred cCCHh--------HHhhCCCcceEecCCCChHHHHHHHHHhhccCC-CCCchHHHH-HHHHHHHhCCChHHHHHHHHHhC
Q 038919 284 TRDEH--------LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQ-KPREEYVHL-SQLVVNYAGGLPLALKVLGSFLF 353 (483)
Q Consensus 284 tR~~~--------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~-~~~i~~~~~G~PLal~~la~~l~ 353 (483)
|.+-. +...+. ...+..+|++.++-.+++..++.... ...+...++ ++.++...|..=.||.++-....
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 33211 111111 22467799999999999998875321 122222222 23333334445566665544432
Q ss_pred C--C---CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCC-----CCCHHHHHH----HHHhC---
Q 038919 354 G--R---PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFK-----GEKRDYVSK----ILDSC--- 416 (483)
Q Consensus 354 ~--~---~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~-----~~~~~~l~~----~~~~~--- 416 (483)
. . .......+..++. ...+...+..||.+.|.+|..+..... .++...+.. ++...
T Consensus 988 ikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 1 1 1222333333221 122445567899998888875554322 233333322 22211
Q ss_pred -CCC-----hhhhHHHHhhCCceeEec
Q 038919 417 -GFE-----PVIGIGVLIEKSLLTICE 437 (483)
Q Consensus 417 -~~~-----~~~~l~~L~~~sLi~~~~ 437 (483)
+.+ ....|.+|...|+|-..+
T Consensus 1061 iGv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1061 IGMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred cCCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 122 334578899999998763
No 23
>PRK06893 DNA replication initiation factor; Validated
Probab=98.96 E-value=2.3e-08 Score=91.86 Aligned_cols=151 Identities=16% Similarity=0.214 Sum_probs=92.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+.+.|+|++|+|||+|+..+++.+........|+. .... ...... +.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~-------~~~~~~----------------------~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKS-------QYFSPA----------------------VLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHh-------hhhhHH----------------------HHhh
Confidence 467899999999999999999998766555555554 1100 000000 1111
Q ss_pred HhcCceEEEEcCCCCH---HHHH----HHhcCCCCCCCCcEEE-EEcCC---------HhHHhhCCCcceEecCCCChHH
Q 038919 246 LRQKKVLLVIDDVAHV---EQLR----RLAGKRDWFGPGSRII-ITTRD---------EHLLKLHRVEEVFKLEALTYDE 308 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~---~~~~----~l~~~~~~~~~~~~il-iTtR~---------~~~~~~~~~~~~~~l~~L~~~e 308 (483)
+. +.-+|+|||++.. ..++ .++.... ..+..+| +|+.. +.+...+.....+++++++.++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~--~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK--EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHH--HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 11 2348999999753 2222 2222211 2355554 45543 2333444455688999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
.++++.+.+..... ...++...-|++.+.|..-.+..+-..
T Consensus 166 ~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 166 KIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999988864432 233467778888888887776655443
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.9e-07 Score=91.15 Aligned_cols=280 Identities=15% Similarity=0.141 Sum_probs=166.8
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhccccee-EEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS-SFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..+.+|+.+++++...|.. ....+.-+.|+|.+|+|||+.++.+++++....+.. +...|+...... .++...
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~----~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP----YQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH----HHHHHH
Confidence 4599999999999987764 222234499999999999999999999988775554 455545443332 667777
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCH-----HHHHHHhcCCCCCCCCcE--EEEEcCCHhHH
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHV-----EQLRRLAGKRDWFGPGSR--IIITTRDEHLL 290 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~--iliTtR~~~~~ 290 (483)
++..+. ..........+....+.+.+. ++.+++|||+++.. +.+-.|....... .++ +|..+-+....
T Consensus 93 i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 93 ILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHH
Confidence 777654 222233445555666666665 47899999999643 3444554443322 333 33344433221
Q ss_pred h--------hCCCcceEecCCCChHHHHHHHHHhhc---cCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHH--hCC--
Q 038919 291 K--------LHRVEEVFKLEALTYDEAFQLFCLKAF---ETQKPREEYVHLSQLVVNYAGGL-PLALKVLGSF--LFG-- 354 (483)
Q Consensus 291 ~--------~~~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G~-PLal~~la~~--l~~-- 354 (483)
. ..+. ..+..+|-+.+|-.+.+..++- ......+...+++..++...+|- =.||..+-.. +.+
T Consensus 170 ~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 170 DYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 1 1222 2377899999999999988763 33344445555666666666653 3444443222 211
Q ss_pred C----CHHHHHHHHHHhccCCCccHHHHHHHhhcCCcHHHHHHHhhhhcCCCCCCHHHHHHH----HHhCCC---Chhhh
Q 038919 355 R----PVDEWTSTLERLKREPENEILDILQISFDGLKEAEKEIFLDVACFFKGEKRDYVSKI----LDSCGF---EPVIG 423 (483)
Q Consensus 355 ~----~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~k~~l~~la~f~~~~~~~~l~~~----~~~~~~---~~~~~ 423 (483)
. +.+.-..+.... -...+...+..|+.++|..+..++....++....+... ....+. .....
T Consensus 249 ~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~i 321 (366)
T COG1474 249 GSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDI 321 (366)
T ss_pred CCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHH
Confidence 0 111111111111 12244556889999999888777776455554444433 323333 33456
Q ss_pred HHHHhhCCceeEec
Q 038919 424 IGVLIEKSLLTICE 437 (483)
Q Consensus 424 l~~L~~~sLi~~~~ 437 (483)
+.+|...|+|....
T Consensus 322 i~~L~~lgiv~~~~ 335 (366)
T COG1474 322 ISELEGLGIVSASL 335 (366)
T ss_pred HHHHHhcCeEEeee
Confidence 88999999998653
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=98.92 E-value=1.1e-07 Score=92.01 Aligned_cols=186 Identities=13% Similarity=0.192 Sum_probs=108.0
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh-cccceeEEEEecccccccCCcHHHH
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS-HEFDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
.|.-...++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+. ..|...+.-.+. ++..+ ...
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~--~~~ 80 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRG--IDV 80 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccccc--HHH
Confidence 3444578999999999998887743 345578999999999999999998763 223222221111 11111 112
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL- 292 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~- 292 (483)
.+..+........ .. ..++.-++|||+++.. ..-..+...+...+..+++++++... .+...
T Consensus 81 vr~~i~~~~~~~~-~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKV-TL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhccc-cC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 2222221111000 00 0134569999999753 33333433333334567777766532 22111
Q ss_pred CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 293 HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
......+++.+++.++....+...+...... ...+....+++.++|..-.+.
T Consensus 147 ~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 147 QSRCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHhhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 1123578999999999999998877443322 224567889999999875443
No 26
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.8e-07 Score=90.11 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=110.4
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEEecccccccCCcHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
+.++|-+...+.|.+.+..+. -...+.++|+.|+||+++|..+++.+--.- .....-... ......+. ......+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~~~~-c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAIDPD-HPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccCCCC-ChHHHHH
Confidence 679999999999999888542 245789999999999999999998763211 110000000 00000000 0111111
Q ss_pred HHHHhc----cc---CCC------ccchhhhHHHHHHHHh-----cCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEE
Q 038919 221 ISDLLK----LA---DNS------IRNVYDGINMIGRRLR-----QKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRI 280 (483)
Q Consensus 221 l~~~~~----~~---~~~------~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~i 280 (483)
...... .. ... .-.+++ +..+.+.+. +.+-++|+|+++ +......|+..+..-.+++.+
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 100000 00 000 001112 222223322 567799999996 445555665555443456667
Q ss_pred EEEcCCHh-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 281 IITTRDEH-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 281 liTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
|++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|+|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77776653 3222 234567999999999999999876421 11 122367899999999866554
No 27
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=9.4e-08 Score=87.98 Aligned_cols=169 Identities=19% Similarity=0.192 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcc
Q 038919 148 IESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKL 227 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 227 (483)
.+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.........+++. +.... ... ..
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~----------~~~-~~---- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA----------QAD-PE---- 83 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH----------HhH-HH----
Confidence 44567777777543 23578999999999999999999987654433333332 22111 000 00
Q ss_pred cCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH----HHHHHhcCCCC-CCCCcEEEEEcCCHh---------HHhhC
Q 038919 228 ADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE----QLRRLAGKRDW-FGPGSRIIITTRDEH---------LLKLH 293 (483)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTtR~~~---------~~~~~ 293 (483)
+...+.+ .-+|||||++... ..+.+...+.. ...+..+|+||+... +....
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0011122 2489999996432 12222221111 023457888887432 11122
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
.....+++++++.++...++...+..... ....+..+.+.+.+.|+|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 22357899999999999999876532221 223466788888999999888766544
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.91 E-value=1.9e-07 Score=90.78 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=107.9
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHH
Q 038919 139 SEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQ 217 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 217 (483)
|.....++|++..++.+..++..+ ..+.+.|+|++|+||||+++.+++.+... +...+...+.. +..+ ....
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~---~~~~--~~~~ 85 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS---DERG--IDVI 85 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc---cccc--hHHH
Confidence 334467999999999999998753 33457999999999999999999876432 21111111111 1111 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-HHh-hC
Q 038919 218 KQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-LLK-LH 293 (483)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~-~~ 293 (483)
...+..+...... ....+-++++|+++.. +....+...+....+.+.+|+++.... +.. ..
T Consensus 86 ~~~i~~~~~~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 86 RNKIKEFARTAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHHHHHHhcCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 1111111110000 0123458999999643 333444443333345667777664321 111 11
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
.....+++.+++.++...++...+...... -..+.+..+++.++|.+.-+.
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 223468999999999999998877543321 234678889999999987643
No 29
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=2.3e-07 Score=96.04 Aligned_cols=196 Identities=18% Similarity=0.169 Sum_probs=114.1
Q ss_pred HHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 140 EILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 140 ~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
....++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+...-.. .....+. ......
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~---------~~~PCG~-C~sCr~ 81 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV---------TSQPCGV-CRACRE 81 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC---------CCCCCcc-cHHHHH
Confidence 334789999999999999988542 24567899999999999999999876421100 0000000 001111
Q ss_pred HHH----HHhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHhH
Q 038919 220 LIS----DLLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEHL 289 (483)
Q Consensus 220 ll~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~ 289 (483)
+.. .+...........++..+.+... ..++.-++|||+++.. ..+..|+..+.....+.++|++|.+..-
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 100 00000000011112211222111 1234558999999754 4466666655544567888887776543
Q ss_pred Hh-h-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 038919 290 LK-L-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP-LALKVL 348 (483)
Q Consensus 290 ~~-~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l 348 (483)
.. . ......+++.+++.++..+.+.+.+...... ...+..+.|++.++|.. -+|..+
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 1 2334679999999999999998876443321 23466788999998865 455543
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=1.1e-07 Score=96.79 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=111.6
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc--ccceeEEEEecccccccCCcHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH--EFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
...++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+.... .+...
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~---------~i~~~ 82 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL---------AVRRG 82 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH---------HHhcC
Confidence 3689999999999998887542 2456799999999999999999987642 1222222221000 00000
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHHh
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLLK 291 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~ 291 (483)
.-..+...........+. +..+.+.+ .+++-++|||+++.. ..+..++..+....+.+.+|+++... .+..
T Consensus 83 ~h~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 83 AHPDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 000000000000111111 11122222 245668999999743 55666666655434555666555433 3322
Q ss_pred h-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 292 L-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 292 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
. ......+++.+++.++..+++...+...... ...+.+..|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 2334679999999999999998877443322 23467888999999998654
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=98.89 E-value=1.7e-07 Score=95.95 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=111.0
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHH
Q 038919 139 SEILKELVGIESRLEKLKFLMGAG--CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
|.-+..++|.+..++.+.+|+..- ....+.+.|+|++|+||||+|..+++.+. +. +...+.+. ... ...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielnasd----~r~-~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNASD----QRT-ADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcccc----ccc-HHH
Confidence 334578999999999999988642 12267899999999999999999999763 22 22222211 111 222
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH------HHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV------EQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
...++........ ....++-+||||+++.. ..+..+...+. ..+..||+|+.+..-.
T Consensus 81 i~~~i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 2222222111100 01135679999999753 22444433332 2344566666433211
Q ss_pred ---hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 291 ---KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 291 ---~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
........+.+.+++.++....+...+...... ...+....|++.++|..-.+......+
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111234578999999999999988776443322 234678889999999876664433333
No 32
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.86 E-value=1.8e-08 Score=89.54 Aligned_cols=50 Identities=32% Similarity=0.497 Sum_probs=35.8
Q ss_pred hhhchhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 144 ELVGIESRLEKLKFLMGA-GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.||||+.+++++...|.. .....+.+.|+|++|+|||+|..+++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999943 33447899999999999999999999988776
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=6.5e-07 Score=88.23 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=110.2
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|-+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+.-..... ..+.+. .....++.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~-c~~c~~~~ 83 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRK-CIICKEIE 83 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC-CHHHHHHh
Confidence 3679999999999999887532 246789999999999999999998764211000 000000 00000110
Q ss_pred HH----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-H
Q 038919 222 SD----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-L 289 (483)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~ 289 (483)
.. +...........++ +..+.+.+ .+++-++|+|+++.. .....++..+....+..++|++|.+.. +
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 00 00000000011111 11122221 234569999999754 345666666554456667777665443 3
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.|.-+.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 222 2234679999999999999988766443211 233567889999999886443
No 34
>PF14516 AAA_35: AAA-like domain
Probab=98.83 E-value=4.3e-06 Score=81.20 Aligned_cols=282 Identities=13% Similarity=0.083 Sum_probs=147.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc-cCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD-KEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~ll 221 (483)
+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+.....-. .+...++..... ...........+.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 4678998555566665553 1368999999999999999999988865422 233334544322 1222244444444
Q ss_pred HHHhcccCCC----------ccchhhhHHHHHHHH-h--cCceEEEEcCCCCHH----HHHHHhcCC-------CCCC--
Q 038919 222 SDLLKLADNS----------IRNVYDGINMIGRRL-R--QKKVLLVIDDVAHVE----QLRRLAGKR-------DWFG-- 275 (483)
Q Consensus 222 ~~~~~~~~~~----------~~~~~~~~~~l~~~l-~--~~~~LlVlDdv~~~~----~~~~l~~~~-------~~~~-- 275 (483)
..+...-... ..........+.+.+ . +++++|+||+++..- ....|+..+ ....
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 4433221111 111222233343332 2 689999999997431 112222211 1000
Q ss_pred CCcEEEEEcCCHh-HHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 276 PGSRIIITTRDEH-LLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 276 ~~~~iliTtR~~~-~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
...++++....+. ... .......+.|++++.+|...|+..+-.. . .....++|...+||+|..+..++
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122222222111 111 0123356899999999999999876422 1 12338999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhccCCCccHHHHHHHhhcCC--cHHHHHHHhhhhcCCCCCCHHHHHHHHHhCCCChhhhHHHH
Q 038919 350 SFLFGRPVDEWTSTLERLKREPENEILDILQISFDGL--KEAEKEIFLDVACFFKGEKRDYVSKILDSCGFEPVIGIGVL 427 (483)
Q Consensus 350 ~~l~~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L--~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L 427 (483)
..+..... ..+..+..-.... .....-|+.-.+.| .++.+.++..+-.-...+ .........|
T Consensus 241 ~~l~~~~~-~~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~-------------~~~~~~~~~L 305 (331)
T PF14516_consen 241 YLLVEEQI-TLEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPV-------------DLDSDDIYKL 305 (331)
T ss_pred HHHHHccC-cHHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCc-------------ccChHHHHHH
Confidence 99865321 1222222211110 11122233333333 223333333222211111 1122346689
Q ss_pred hhCCceeEecCCeEEc-cHHHHHH
Q 038919 428 IEKSLLTICESDRLWM-HDLLLEM 450 (483)
Q Consensus 428 ~~~sLi~~~~~~~~~m-H~lvr~~ 450 (483)
...|||... +|.+.. .++-|++
T Consensus 306 ~~~GLV~~~-~~~~~~~n~iY~~y 328 (331)
T PF14516_consen 306 ESLGLVKRD-GNQLEVRNPIYRQY 328 (331)
T ss_pred HHCCeEEEe-CCEEEEEcHHHHHH
Confidence 999999998 566554 4554443
No 35
>PTZ00202 tuzin; Provisional
Probab=98.82 E-value=1.9e-06 Score=83.69 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=97.3
Q ss_pred HHhhhchhHHHHHHHHHhhcCCC-CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCN-DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
++.|+||+.++..|...|...+. .++++.|+|++|+|||||++.+..... ...++.|.. +. .+++..+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~-eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GT-EDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CH-HHHHHHH
Confidence 37899999999999999975333 356999999999999999999997654 235555444 22 6777777
Q ss_pred HHHHhcccCCCccchhhhHHHHHHHH-----h-cCceEEEEcCC--CCHHH----HHHHhcCCCCCCCCcEEEEEcCCHh
Q 038919 221 ISDLLKLADNSIRNVYDGINMIGRRL-----R-QKKVLLVIDDV--AHVEQ----LRRLAGKRDWFGPGSRIIITTRDEH 288 (483)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv--~~~~~----~~~l~~~~~~~~~~~~iliTtR~~~ 288 (483)
+..+.-. ......++...+.+.+ . +++.+||+-=- .+..- .-.|... ..-|+|++----+.
T Consensus 330 L~ALGV~---p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evples 402 (550)
T PTZ00202 330 VKALGVP---NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVPLES 402 (550)
T ss_pred HHHcCCC---CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhh
Confidence 7775432 1222233333333332 2 56666666422 22211 1122211 34577776444332
Q ss_pred HHh---hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 289 LLK---LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 289 ~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
+.. ..+.-..|.+++++.++|.++.....
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 211 11233468999999999999886654
No 36
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=4.3e-07 Score=90.46 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=111.6
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
-...+||-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+....+...-.++. ......+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~------C~sC~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE------CTSCLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC------CcHHHHHHccC
Confidence 34789999999999999888542 235689999999999999999998764321110000000 00001110000
Q ss_pred HHHHhccc---CCCccchhhhHHHHHHH-HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCC-HhHHhh-
Q 038919 221 ISDLLKLA---DNSIRNVYDGINMIGRR-LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRD-EHLLKL- 292 (483)
Q Consensus 221 l~~~~~~~---~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~- 292 (483)
...+.... .....+..+..+.+... ..++.-++|+|+++. .+....|+..+........+|++|.+ ..+...
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000000 00111112222222111 235667999999974 45677777666543455655555554 333222
Q ss_pred CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH
Q 038919 293 HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA 344 (483)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 344 (483)
......|.+.+++.++..+.+...+..... .-..+....|++.++|.+.-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 223457999999999999998887644322 12346788899999999843
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=3.9e-07 Score=93.37 Aligned_cols=193 Identities=19% Similarity=0.136 Sum_probs=112.8
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
-...+||.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+.-..... ....+. ....+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~---------~~pCg~-C~sC~~I 81 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVT---------STPCEV-CATCKAV 81 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC---------CCCCcc-CHHHHHH
Confidence 34789999999999999998542 246889999999999999999998763211000 000000 0000010
Q ss_pred HH----HHhcccCCCccchhhhHHHHHH----HHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 221 IS----DLLKLADNSIRNVYDGINMIGR----RLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 221 l~----~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
.. .+...........++..+.+.. -..++.-++|+|+++.. .....|+..+.....++.+|++|.+..-.
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00 0000000001112221111111 11255679999999754 45666665555445667777777654321
Q ss_pred --hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 291 --KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 291 --~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
........+++.+++.++..+.+...+..... ....+....|++.++|.+..+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 11234467999999999999999877644332 2334667889999999885443
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=6e-07 Score=91.83 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=113.2
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
...++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+...-+... ... .....+. ......+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~PCG~-C~sC~~I 87 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQPCGQ-CRACTEI 87 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCCCCcc-cHHHHHH
Confidence 34789999999999999998542 2467789999999999999999987642110000 000 0000000 0000111
Q ss_pred HH----HHhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hH
Q 038919 221 IS----DLLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HL 289 (483)
Q Consensus 221 l~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~ 289 (483)
.. .+...........++..+.+... ..++.-++|||+++. ....+.|+..+..-..++.+|++|.+. .+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 00000000111122222222211 135566999999974 456777777766545666766655544 33
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
... ......+.+.+++.++..+.+.+.+...... ...+..+.|++.++|.|.-..
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 322 2234578999999999999988776433221 223556788999999986443
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.77 E-value=2.1e-07 Score=91.90 Aligned_cols=172 Identities=14% Similarity=0.251 Sum_probs=100.8
Q ss_pred HhhhchhHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGAG-----------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|++.+++++.+.+... -..++-+.|+|++|+|||+||+.+++.....|-. +.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~------v~------- 188 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR------VV------- 188 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe------cc-------
Confidence 57999999999998866421 1224569999999999999999999977654311 10
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHH-HHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGIN-MIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
. ..+... ..+. ...... .+...-...+.+|+||+++.. ..+..++..+..+
T Consensus 189 ~-~~l~~~----~~g~-------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 189 G-SELVRK----YIGE-------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred h-HHHHHH----hhhH-------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 0 111111 1110 011111 122222356789999998643 1233333222211
Q ss_pred --CCCcEEEEEcCCHhHH-----hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 --GPGSRIIITTRDEHLL-----KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 --~~~~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||.||...... ........+.++..+.++..++|..+..+.....+. ....+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~---~~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV---DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC---CHHHHHHHcCCCC
Confidence 2466788888754322 112335678999999999999999887554332211 1456677777654
No 40
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=2.2e-08 Score=83.17 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
+++.|+|+.|+|||||++++++... .....+++. .... .... .. ..+ ..+.+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~--------~~~~-~~------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP--------RDRR-LA------------DPD-LLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH--------HHHH-Hh------------hhh-hHHHHHHhh
Confidence 6899999999999999999998766 112233332 2211 0000 00 000 122233333
Q ss_pred hcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh------CCCcceEecCCCChHHH
Q 038919 247 RQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKL------HRVEEVFKLEALTYDEA 309 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~------~~~~~~~~l~~L~~~ea 309 (483)
..++.+|+||++.....|...+..+....+..+|++|+.+...... .+....+++.||+..|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477899999998776666655554443567899999997765532 12234689999998873
No 41
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.76 E-value=1.9e-07 Score=85.99 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=96.7
Q ss_pred Hhhh-chhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 143 KELV-GIESRL-EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 143 ~~~v-GR~~~l-~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
++|+ |...+. ..+.++... ....+.+.|+|++|+|||+||..+++.....-....++. ... ....+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~----------~~~~~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS----------PLLAF 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------hHHHH
Confidence 3444 554433 444444442 233467899999999999999999987644322333333 111 00000
Q ss_pred HHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCC-CCCc-EEEEEcCCHhHHh-----
Q 038919 221 ISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWF-GPGS-RIIITTRDEHLLK----- 291 (483)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~~~-~iliTtR~~~~~~----- 291 (483)
.. ....-+||+||++.. .....+...+... ..+. .+|+|++......
T Consensus 86 -----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 86 -----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred -----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 01 123347899999643 2222222222110 1233 4666666432111
Q ss_pred ---hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 292 ---LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 292 ---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
.......+++++++.++-..++...+.... ..-.++..+.+++.+.|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222235789999999987777776543222 12334678888899999999887776554
No 42
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.1e-06 Score=92.93 Aligned_cols=190 Identities=17% Similarity=0.116 Sum_probs=113.2
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc-e--eEEEEecccccccCCcHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-G--SSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
...+||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+..... . .|..++ ...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~-------------sC~ 80 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS-------------SCV 80 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch-------------HHH
Confidence 3689999999999999887532 2456789999999999999999987643210 0 011100 000
Q ss_pred HHHHH----HhcccC---CCccchhhhHHHHHH-HHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-
Q 038919 219 QLISD----LLKLAD---NSIRNVYDGINMIGR-RLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE- 287 (483)
Q Consensus 219 ~ll~~----~~~~~~---~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~- 287 (483)
.+... +..... ............+.. -..++.-++|||+++. .+....|+..+......+++|++|.+.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 00000 000000 011111111211111 1235677999999974 466777776665545667776665543
Q ss_pred hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 288 HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 288 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
.+... ......|++.+|+.++....+...+..... ....+.+..|++.++|.|--+..
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33322 223467999999999999999886643221 22346678899999999864433
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=1.2e-06 Score=92.89 Aligned_cols=172 Identities=26% Similarity=0.330 Sum_probs=101.8
Q ss_pred HHhhhchhHHHH---HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 142 LKELVGIESRLE---KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 142 i~~~vGR~~~l~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
...|+|.+..+. .+.+.+.. +..+.+.|+|++|+||||||+.+++.....|. .+. . . ..+. ..
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a--~--~~~i-~d--- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-A--V--LAGV-KD--- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-h--h--hhhh-HH---
Confidence 467899988774 46666663 34567899999999999999999987654431 111 0 0 0000 00
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHHHH--hcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEE--EcCCHh--HH
Q 038919 219 QLISDLLKLADNSIRNVYDGINMIGRRL--RQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIII--TTRDEH--LL 290 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~ili--TtR~~~--~~ 290 (483)
...........+ .+++.+|||||++ +..+.+.+++.+. .+..++| ||.++. +.
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 111111111111 2457799999996 4455566665443 3444554 344432 11
Q ss_pred h-hCCCcceEecCCCChHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 291 K-LHRVEEVFKLEALTYDEAFQLFCLKAFE-----TQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 291 ~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
. .......+.+++|+.++...++.+.+.. .........+....|++.+.|+.--+.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1 1123457899999999999999876631 011122345677889999999865443
No 44
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=9.6e-07 Score=85.90 Aligned_cols=198 Identities=16% Similarity=0.113 Sum_probs=111.3
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|-+...+.+...+..+. ....+.|+|+.|+||||+|..+++.+-..-+. ..-.. ......+. ......+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~-~~~~~--~~~~~~~~-c~~c~~i~ 96 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDP-AEAPE--TLADPDPA-SPVWRQIA 96 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCcc-ccCcc--ccCCCCCC-CHHHHHHH
Confidence 3689999999999999988542 35679999999999999999999876442100 00000 00000000 11111111
Q ss_pred HH-------HhcccCC------CccchhhhHHHHHHHHh-----cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEE
Q 038919 222 SD-------LLKLADN------SIRNVYDGINMIGRRLR-----QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRII 281 (483)
Q Consensus 222 ~~-------~~~~~~~------~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~il 281 (483)
.. +...... ..-.+++ +..+.+.+. ++.-++|+|+++. ......++..+.....++.+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 11 0000000 0001122 222333332 4566999999974 344555555444334455555
Q ss_pred EEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 282 ITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 282 iTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
++|.++ .+... ......+++.+++.++..+++........ ...+.+..+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544433 23222 22345799999999999999987432211 223557789999999998665443
No 45
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1e-06 Score=85.25 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=109.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-----cceeEEEEecccccccCCcHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVKEKYDKEGSVISLQ 217 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~ 217 (483)
..++|-+...+.+.+.+..+ .-.....++|+.|+||||+|..+++.+-.. ++....+....+ .... ..-.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~i~--v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KSIG--VDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CCCC--HHHH
Confidence 46789888889999988743 235678999999999999999999875321 222212211000 0000 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcCCHhHH-hh-C
Q 038919 218 KQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTRDEHLL-KL-H 293 (483)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~-~~-~ 293 (483)
+.+...+... -..+++-++|+|+++ +.+....|+..+....+++.+|++|.+...+ +. .
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 1222111000 012344567777774 5566777877777667788888888765432 11 2
Q ss_pred CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 294 RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
.....+++.+++.++...++.....+ ...+.+..++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 33468999999999999988765421 1124467789999999865543
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.71 E-value=2.9e-06 Score=83.85 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=110.2
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.++..+...-.. .+ ...+. ......+.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~-~~--------~~c~~-c~~c~~~~ 81 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGP-DG--------EPCNE-CESCKEIN 81 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CC--------CCCCC-CHHHHHHh
Confidence 3678999999999999887532 24678899999999999999999876422000 00 00000 00000000
Q ss_pred HH----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-H
Q 038919 222 SD----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-L 289 (483)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~ 289 (483)
.. +............+ ...+.+.+ .+++-++|+|+++.. .....++..+....+.+.+|++|.+.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDD-IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred cCCCCCEEEeeccccCCHHH-HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 00 00000000001111 11111111 234558999999644 445566555544355667667765543 2
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
... ......+++.+++.++..+++...+-..... ...+.+..+++.++|.|..+....
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 222 2234578899999999999998866433221 224678889999999997665443
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.70 E-value=2.4e-07 Score=82.24 Aligned_cols=177 Identities=24% Similarity=0.223 Sum_probs=97.7
Q ss_pred HhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
.+|||-++.++.+.-++.. .......+.+||+||+||||||.-+++.+...|.. .. .. ... .. .++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~s-g~-~i~--k~-~dl~-- 93 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TS-GP-AIE--KA-GDLA-- 93 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EE-CC-C----SC-HHHH--
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---cc-ch-hhh--hH-HHHH--
Confidence 6799999988887765543 23346789999999999999999999988766531 11 00 000 01 1111
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC--HHHHHHHhcCCCCC--------CCCc-----------
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH--VEQLRRLAGKRDWF--------GPGS----------- 278 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~--------~~~~----------- 278 (483)
..+. .+ +++.+|.+|.+.. ..+-+.|.+.+..+ +++.
T Consensus 94 --------------------~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 --------------------AILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --------------------HHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --------------------HHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1111 11 2455888899964 34444444433211 2221
Q ss_pred EEEEEcCCHhHHhhCC--CcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhC
Q 038919 279 RIIITTRDEHLLKLHR--VEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLF 353 (483)
Q Consensus 279 ~iliTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~ 353 (483)
-|=-|||...+..... ..-+.+++..+.+|-.+++.+.+..-. -+...+.+.+|+..|.|-|--..-+-..++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2334777544332222 223458999999999999987764433 234567899999999999976665555543
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.2e-06 Score=86.36 Aligned_cols=187 Identities=12% Similarity=0.069 Sum_probs=106.4
Q ss_pred HhhhchhHHHHHHHHHhhcCCC--------CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCN--------DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVI 214 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 214 (483)
..++|-+..++.|.+++..+.+ -.+.+.++|++|+|||++|..++..+--.... ...+ +. .
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~C-------g~-C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---EPGC-------GE-C 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---CCCC-------CC-C
Confidence 5689999999999999886431 25678999999999999999999865322110 0000 00 0
Q ss_pred HHHHHHHHHHhc----c-cCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEE
Q 038919 215 SLQKQLISDLLK----L-ADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIII 282 (483)
Q Consensus 215 ~l~~~ll~~~~~----~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili 282 (483)
.....+...... . .....-..++. ..+.+.+ .+++-++|+|+++.. .....|+..+....+++.+|+
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 000000000000 0 00000111111 1122222 234558888999743 444556555544456676766
Q ss_pred EcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 283 TTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 283 TtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
+|.+. .+.+. ......+.+.+++.++..+.+..... . ..+.+..++..++|.|.....+
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 66654 33322 23346899999999999999875431 1 1245778899999999654433
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.69 E-value=2.2e-07 Score=78.82 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=69.5
Q ss_pred hchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHh
Q 038919 146 VGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLL 225 (483)
Q Consensus 146 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (483)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+..... .+++.+........ ........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~~~~~~~~-----~~~~~~~~-- 70 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNASDLLEGL-----VVAELFGH-- 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC-CeEEEehhhhhhhh-----HHHHHhhh--
Confidence 47888899998887643 3468999999999999999999998753322 33333222211110 00000000
Q ss_pred cccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-----HHHHHHhcCCCCC---CCCcEEEEEcCCH
Q 038919 226 KLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-----EQLRRLAGKRDWF---GPGSRIIITTRDE 287 (483)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~~~~iliTtR~~ 287 (483)
. ............++.++|+||++.. ..+...+...... ..+..+|+||...
T Consensus 71 --~--------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 71 --F--------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --h--------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0 0011111222456789999999853 2233333333221 3577888888854
No 50
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=3e-06 Score=85.72 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=108.8
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
....+||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+...-.. .+. +.+. ......+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~--~~~-------pc~~-c~~c~~i 80 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRK--GVE-------PCNE-CRACRSI 80 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC--CCC-------CCcc-cHHHHHH
Confidence 34789999988888888877432 23568999999999999999999875321000 000 0000 0000000
Q ss_pred HH----HHhcccCCCccchhhhHHHHHHH-----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-h
Q 038919 221 IS----DLLKLADNSIRNVYDGINMIGRR-----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-H 288 (483)
Q Consensus 221 l~----~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~ 288 (483)
.. .+...........+.. ..+.+. ..+++-++|+|+++.. +....|+..+....+...+|++|.++ .
T Consensus 81 ~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 00 0000000001111111 112222 1245679999999754 44566665555434455555454443 2
Q ss_pred HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 038919 289 LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALKVLGSF 351 (483)
Q Consensus 289 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~la~~ 351 (483)
+... ......+++.+++.++....+...+..... ....+....|++.++|. +.++..+-..
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222 234467899999999999999887643322 12345677888877655 5666666543
No 51
>PRK08727 hypothetical protein; Validated
Probab=98.68 E-value=9.8e-07 Score=81.29 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=95.2
Q ss_pred HhhhchhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIES-RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~-~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
++|++... .+..+...... .....+.|+|++|+|||.|+.++++..........|+. .. .....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~----------~~~~~~~ 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQ----------AAAGRLR 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HH----------HhhhhHH
Confidence 34554443 33333333321 12356999999999999999999988766544444543 11 1111100
Q ss_pred HHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcCCHh--------
Q 038919 222 SDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----EQLRRLAGKRDW-FGPGSRIIITTRDEH-------- 288 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTtR~~~-------- 288 (483)
. .+ +.+ .+.-+|||||++.. ..-..++..+.. ...+..+|+|++...
T Consensus 86 ~------------------~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 D------------------AL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred H------------------HH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 0 01 111 23348999999632 211222221111 134667999998531
Q ss_pred -HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 289 -LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 289 -~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
+.........+++++++.++-.+++.+++..... ....+...-|++.++|-.-.+
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 2222223457899999999999999987643221 233466777888887665554
No 52
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=1.1e-06 Score=89.07 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=112.6
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHH
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQ 217 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 217 (483)
.|....++||-+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+.......- .......+. ....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~-----~~~~~~C~~-C~~C 88 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE-----NTTIKTCEQ-CTNC 88 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccc-----CcCcCCCCC-ChHH
Confidence 33444789999999999998877442 2467899999999999999999987632210000 000000000 0000
Q ss_pred HHHHHH----HhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEE-EcCC
Q 038919 218 KQLISD----LLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIII-TTRD 286 (483)
Q Consensus 218 ~~ll~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili-TtR~ 286 (483)
..+... +...........++....+... +.+++-++|+|+++.. ..+..|+..+....+.+.+|+ ||+.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 000000 0000000111122222222111 2245678999999753 556666655554455666554 4444
Q ss_pred HhHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 287 EHLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 287 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
..+... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+.-+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 444332 2234578999999999999998887543322 23356778999999987544
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.67 E-value=3.1e-07 Score=85.81 Aligned_cols=172 Identities=20% Similarity=0.300 Sum_probs=101.6
Q ss_pred HhhhchhHHHHH---HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEK---LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
.++||.+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-..+- +++..++..... ..-.+.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~----t~dvR~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAK----TNDVRD 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccc----hHHHHH
Confidence 556666654433 333444 34678899999999999999999998765542 223222222111 111112
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEE--EcCCHhHH---hh
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIII--TTRDEHLL---KL 292 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~ili--TtR~~~~~---~~ 292 (483)
+..+.- -...+.+++.+|.+|.|. +..|-+.|++... .|..++| ||-|+..- ..
T Consensus 209 ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 209 IFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHH
Confidence 211100 112346889999999995 5566677777653 5666665 77776431 12
Q ss_pred CCCcceEecCCCChHHHHHHHHHhhc---cCCC---C-Cc----hHHHHHHHHHHHhCCCh
Q 038919 293 HRVEEVFKLEALTYDEAFQLFCLKAF---ETQK---P-RE----EYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~---~-~~----~~~~~~~~i~~~~~G~P 342 (483)
.....++.|++|+.++...++.+... .... + +. ....+.+-++..|.|-.
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 23456889999999999999877321 1111 1 11 23345555667777764
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=8.4e-07 Score=89.47 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=98.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccc-eeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|..|+|||.|+.++++.+....+ ..+.+... ..+...+...+.... .....+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~~--------~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKTH--------KEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHhh--------hHHHHHHH
Confidence 356899999999999999999997654322 22222211 333344433322100 11223333
Q ss_pred HHhcCceEEEEcCCCCH-------HHHHHHhcCCCCCCCCcEEEEEcCCH-hH--------HhhCCCcceEecCCCChHH
Q 038919 245 RLRQKKVLLVIDDVAHV-------EQLRRLAGKRDWFGPGSRIIITTRDE-HL--------LKLHRVEEVFKLEALTYDE 308 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~~~iliTtR~~-~~--------~~~~~~~~~~~l~~L~~~e 308 (483)
.++ ..-+|||||+... +.+..++..+. ..+..||+|+... .. ...+...-++.+++++.++
T Consensus 203 ~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 203 EIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred Hhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 344 3448889999532 22333333222 3455788887643 11 2222344567899999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
-.+++.+.+-.........++...-|++.++|.|-.+.-+...
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999998874422111244578888999999999888765543
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=9e-07 Score=91.55 Aligned_cols=194 Identities=19% Similarity=0.145 Sum_probs=109.7
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-.-... . . .+ +. ......+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~-~----pC---g~-C~sCr~i~ 83 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-G-E----PC---GV-CQSCTQID 83 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-C-C----CC---cc-cHHHHHHh
Confidence 4789999999999999988542 246789999999999999999998653211000 0 0 00 00 00000000
Q ss_pred H----HHhcccCCCccchhhhHHHHHH---H-HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-HH
Q 038919 222 S----DLLKLADNSIRNVYDGINMIGR---R-LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-LL 290 (483)
Q Consensus 222 ~----~~~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~ 290 (483)
. .+...........+...+.+.. . ..+++-++|||+++.. .....|+..+......+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 0 0000000011111111111111 1 1245669999999754 334455544443345667777665442 22
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.. .+....+.+.+++.++....+.+.+...... ...+.+..|++.++|.+.-+..+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHHH
Confidence 11 1223457888999999999998877543322 23466788999999998555433
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=1.8e-07 Score=77.97 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=70.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhccc----ceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEF----DGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
.+.+.|+|++|+|||+++.++++.....+ ...+++.++.... .. ..+...++..+...... ..+.....+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR---TP-RDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS---SH-HHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC---CH-HHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 47899999999999999999999775431 3334444343322 22 67777777775443332 3455666677
Q ss_pred HHHHHhcCce-EEEEcCCCCH---HHHHHHhcCCCCCCCCcEEEEEcCC
Q 038919 242 IGRRLRQKKV-LLVIDDVAHV---EQLRRLAGKRDWFGPGSRIIITTRD 286 (483)
Q Consensus 242 l~~~l~~~~~-LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTtR~ 286 (483)
+.+.+...+. +||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777776655 9999999765 33444433222 567778887764
No 57
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.9e-06 Score=86.81 Aligned_cols=190 Identities=18% Similarity=0.143 Sum_probs=109.8
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...+||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+--.+... ....+. ......+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg~-C~~C~~i~ 80 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCGT-CHNCISIK 80 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCccc-cHHHHHHh
Confidence 4789999999999998887542 245899999999999999999988642211100 000000 00001110
Q ss_pred HHH----hcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCC-HhH
Q 038919 222 SDL----LKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRD-EHL 289 (483)
Q Consensus 222 ~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~-~~~ 289 (483)
... ...........++... +.+.. .++.-++|+|+++. ....+.|+..+..-.+.+.+|++|.+ +.+
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 000 0000000111111111 11111 24556899999964 34566666665544566766665543 333
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+.-+
T Consensus 160 ~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 322 2344678999999999999998877543322 23456788999999988643
No 58
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.4e-06 Score=86.88 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=110.5
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc--cceeEEEEecccccccCCcHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
....++|-+...+.|.+++..+. -...+.++|++|+||||+|..+++.+.-. +...-|..+....+ +. .....
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c---~~-c~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC---GE-CESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC---CC-CHHHH
Confidence 34689999999999999888542 24568899999999999999999876431 10000100000000 00 01111
Q ss_pred HHHHHH----hcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-CC
Q 038919 219 QLISDL----LKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITT-RD 286 (483)
Q Consensus 219 ~ll~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTt-R~ 286 (483)
.+.... ...........++..+ +.+.+ .+.+-++|+|+++. ....+.++..+....+.+.+|++| +.
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 111000 0000001111222222 22223 24456889999964 345666665555445566666555 43
Q ss_pred HhHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 287 EHLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 287 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
..+... ......+++.+++.++..+.+...+..... ....+.+..+++.++|.+--+..
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 333322 122356889999999999988876633221 13346788899999998864433
No 59
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.9e-06 Score=88.13 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=109.8
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|-+..++.|...+..+ .....+.++|++|+||||+|+.+++.+....... ....+. ......+.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~-C~sC~~i~ 83 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVT---------AEPCNK-CENCVAIN 83 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcc-cHHHHHHh
Confidence 368999999999999988753 2245688999999999999999998654211000 000000 00000000
Q ss_pred H----HHhcc---cCCCccchhhhHHHHHHH-HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHH
Q 038919 222 S----DLLKL---ADNSIRNVYDGINMIGRR-LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLL 290 (483)
Q Consensus 222 ~----~~~~~---~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~ 290 (483)
. .+... ......+.....+.+... ..+++-++|+|+++. ......|+..+......+.+|++|.+. .+.
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 0 00000 000011111122222111 235667999999974 455666666665445566666544433 333
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVL 348 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 348 (483)
.. ......+++.+++.++..+.+...+..... ....+....|++.++|.+- ++..+
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 234568999999999999888876543221 2234567788999999774 44443
No 60
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=7.7e-06 Score=84.84 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=111.1
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+--.-+.. .... .....+. ......+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~~~--~~~pCg~-C~~C~~i~ 88 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QGGI--TATPCGV-CQACRDID 88 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--ccCC--CCCCCCc-cHHHHHHH
Confidence 3689999999999999988542 246789999999999999999988653210000 0000 0000000 01111110
Q ss_pred H----HHhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCC-HhH
Q 038919 222 S----DLLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRD-EHL 289 (483)
Q Consensus 222 ~----~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~-~~~ 289 (483)
. .+...........++..+.+ +.. .++.-++|||+++. ......|+..+..-...+.+|++|.+ ..+
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0 00000000011122221211 111 13455899999974 45667777666554556666665544 333
Q ss_pred Hh-hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 290 LK-LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 290 ~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
.. .......+++.+++.++..+.+...+...... ...+.+..|++.++|.+.-+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 22344679999999999999998776443322 2235678889999998755443
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.61 E-value=3e-06 Score=75.50 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=60.6
Q ss_pred cCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 248 QKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 248 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+... ......+.+.+++.++..+.+.... .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG----I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----C-
Confidence 45668999999643 44566666655545667777777654 22221 1234689999999999999998771 1
Q ss_pred CchHHHHHHHHHHHhCCChH
Q 038919 324 REEYVHLSQLVVNYAGGLPL 343 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PL 343 (483)
..+.+..+++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 13568899999999985
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.61 E-value=2e-06 Score=85.40 Aligned_cols=171 Identities=15% Similarity=0.248 Sum_probs=98.6
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|++.+++++.+.+.. +-..++-+.|+|++|+|||++|++++++....| +....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~-------- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVG-------- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeeh--------
Confidence 5789999999999886532 112356689999999999999999999765432 11111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHH-HHHHHHhcCceEEEEcCCCCH-------------H---HHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGIN-MIGRRLRQKKVLLVIDDVAHV-------------E---QLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~ 274 (483)
..+ .....+ ....... .+...-...+.+|+||+++.. + .+..++..+..+
T Consensus 199 --~~l----~~~~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 --SEL----VQKFIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred --HHH----hHhhcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 111111 0011111 122222356889999999753 1 122333222211
Q ss_pred --CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 275 --GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 275 --~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
..+..||.||........ ...+..+.+++.+.++-.++|+.+..+...... .....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 235667777765432211 123567999999999999999987754332221 1145566666664
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.5e-06 Score=90.23 Aligned_cols=192 Identities=19% Similarity=0.152 Sum_probs=110.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..... .....+. ......+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---------~~~pCg~-C~~C~~i~ 83 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---------TATPCGE-CDNCREIE 83 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---------CCCCCCC-CHHHHHHH
Confidence 3689999999999999888542 24567899999999999999999865432100 0000000 11111111
Q ss_pred HH----HhcccC---CCccchhhhHHHHHHH-HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHH
Q 038919 222 SD----LLKLAD---NSIRNVYDGINMIGRR-LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLL 290 (483)
Q Consensus 222 ~~----~~~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~ 290 (483)
.. +..... ....+..+....+... ..++.-++|||+++. ......|+..+..-...+++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 000000 0111111111111111 235667999999974 456666666555445566666655544 333
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
.. ......+.+.+|+.++..+.+...+...... ...+....|+..++|.+--..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22 2334679999999999999998766332211 223567789999999886443
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=5.8e-06 Score=84.55 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=107.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...+||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+--.-... ....+. ......+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~-C~~C~~i~ 83 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCND-CENCREID 83 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCCC-CHHHHHHh
Confidence 3689999999999999997542 245688999999999999999998653210000 000000 00000000
Q ss_pred HH----HhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHH
Q 038919 222 SD----LLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLL 290 (483)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~ 290 (483)
.. +...........++..+.+... ..++.-++|+|+++. .+....++..+....+.+++|++|.+. .+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 00 0000000011111111111110 124556899999974 455666666555445677777665543 222
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
.. ......+++.+++.++....+...+...... ...+....|++.++|.+.-+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 11 1233568899999999888877666433322 223557788999999885443
No 65
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.6e-06 Score=85.58 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc--cceeEEEEecccccccCCcHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
..+||-+..++.|.+++..+ .-...+.++|+.|+||||+|..+++.+.-. .....|..+....+. . ......+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg---~-C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG---E-CESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc---c-CHHHHHH
Confidence 68999999999999988743 224568899999999999999999876331 110111111000000 0 0111111
Q ss_pred HHHH----hcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEc-CCHhH
Q 038919 221 ISDL----LKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITT-RDEHL 289 (483)
Q Consensus 221 l~~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTt-R~~~~ 289 (483)
.... ...........++....+... ..+.+-++|+||++.. ...+.|+..+..-.+.+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000 000000111122222222111 1244558899999654 44566666555434555555544 43333
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
... ......+++.+++.++....+...+..... ....+.+..+++.++|..--+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHH
Confidence 322 334568999999999999888876543221 123466788999999976533
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.57 E-value=1.5e-06 Score=79.12 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=91.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccce-eEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG-SSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|+.|+|||.|..++++.+....+. .+.+... ......+...+.. .....+++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~----------~~~~~~~~ 93 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRD----------GEIEEFKD 93 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHT----------TSHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHc----------ccchhhhh
Confidence 4568899999999999999999987754432 3333211 2333333333221 11222444
Q ss_pred HHhcCceEEEEcCCCCH---H----HHHHHhcCCCCCCCCcEEEEEcCCHh---------HHhhCCCcceEecCCCChHH
Q 038919 245 RLRQKKVLLVIDDVAHV---E----QLRRLAGKRDWFGPGSRIIITTRDEH---------LLKLHRVEEVFKLEALTYDE 308 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~---~----~~~~l~~~~~~~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~e 308 (483)
.+++ -=+|+|||++.. . .+-.+...+. ..|.++|+|++... +.......-++++.+++.++
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 4443 348889999542 2 2222222221 35778999996431 22223345679999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
-.+++.+.+...... -.++++.-+++.+.+..-.|..+-.
T Consensus 171 r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 171 RRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999887543322 3446677788887777666654433
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=3.4e-06 Score=87.55 Aligned_cols=202 Identities=18% Similarity=0.132 Sum_probs=114.7
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHH
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQ 217 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 217 (483)
.|.....++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-.....- ........+. ....
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~-c~~C 92 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGV-GEHC 92 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcc-cHHH
Confidence 33444789999999999999988542 2457899999999999999999987643221000 0000000000 0111
Q ss_pred HHHHHHH----hcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEc-C
Q 038919 218 KQLISDL----LKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITT-R 285 (483)
Q Consensus 218 ~~ll~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTt-R 285 (483)
..+.... ...........++..+ +.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++| .
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1111100 0000001111222111 21222 234558999999643 45666665555445667666555 4
Q ss_pred CHhHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 286 DEHLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 286 ~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
...+... ......+++.+++.++....+.+.+...... ...+.+..|++.++|.+.-+...
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333322 2234678999999999999998876443222 23366788999999998655433
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.57 E-value=3e-06 Score=78.22 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=94.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
.+..+.++... ...+.+.|+|++|+|||+|+..+++..........|+. +... .....
T Consensus 32 a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~------------ 89 (235)
T PRK08084 32 LLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVP------------ 89 (235)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhH------------
Confidence 33444444432 23467899999999999999999987765433334433 2110 00000
Q ss_pred CccchhhhHHHHHHHHhcCceEEEEcCCCCH---HH----HHHHhcCCCCCCCCcEEEEEcCCHh---------HHhhCC
Q 038919 231 SIRNVYDGINMIGRRLRQKKVLLVIDDVAHV---EQ----LRRLAGKRDWFGPGSRIIITTRDEH---------LLKLHR 294 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~----~~~l~~~~~~~~~~~~iliTtR~~~---------~~~~~~ 294 (483)
+ +.+.+.+ --+|+|||++.. .. +..++..... ....++|+||+.+. +...+.
T Consensus 90 ------~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 90 ------E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred ------H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 0 1111111 238899999542 22 2222222111 12347899988542 223334
Q ss_pred CcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 295 VEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 295 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
...++++.+++.++-.+++.+++.... -.-.+++..-|++.+.|..-.+..+-.
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 456899999999999999987664322 123346777888888887766654443
No 69
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=5.9e-06 Score=84.68 Aligned_cols=194 Identities=16% Similarity=0.087 Sum_probs=107.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|.+..++.+.+++..+. -.+.+.++|++|+||||+|..+++.+...-... . ...+. ......+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~-----~----~~Cg~-C~sCr~i~ 83 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD-----G----DCCNS-CSVCESIN 83 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----C----CCCcc-cHHHHHHH
Confidence 3689999999999999887532 246789999999999999999998764211000 0 00000 11111111
Q ss_pred HHH----hcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hH
Q 038919 222 SDL----LKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HL 289 (483)
Q Consensus 222 ~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~ 289 (483)
... ...........++. ..+.+.+ .+++-++|+|+++. ......|+..+....+.+.+|++|... .+
T Consensus 84 ~~~h~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred cCCCCceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 000 00000000111111 1111111 12334799999964 345555555444334456565555433 33
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVLG 349 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~la 349 (483)
... ......+++.+++.++....+...+...... ...+.+..+++.++|.+. |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 222 2344678999999999999988766433211 223567889999999775 444443
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-05 Score=81.51 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=110.9
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.++..+.-..... ....+. ......+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~-C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---------ATPCGV-CESCVAL 79 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCcccc-cHHHHHh
Confidence 34789999999999999988532 245678999999999999999998654211000 000000 0001111
Q ss_pred HHH------HhcccCC---CccchhhhHHHHHHH-HhcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcC-CH
Q 038919 221 ISD------LLKLADN---SIRNVYDGINMIGRR-LRQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTR-DE 287 (483)
Q Consensus 221 l~~------~~~~~~~---~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR-~~ 287 (483)
... +...... ...+..+..+.+... ..+++-++|+|+++ +.+..+.|+..+......+.+|++|. ..
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 0000000 111111111111111 12455689999996 34566666666654455666665554 34
Q ss_pred hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 038919 288 HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVL 348 (483)
Q Consensus 288 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 348 (483)
.+... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+- ++..+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43322 2345679999999999999988766443321 223567778999999885 44444
No 71
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=2.3e-06 Score=78.85 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=89.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+.+.|+|.+|+|||.|+..+++.+......++|+. . ..+.. . ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~----------~~~~~----~---------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-L----------AELLD----R---------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-H----------HHHHh----h---------------hHHHHHh
Confidence 367899999999999999999987765433444443 1 11111 0 0112223
Q ss_pred HhcCceEEEEcCCCCH---HH----HHHHhcCCCCCCCCcEEEEEcCCHhH---------HhhCCCcceEecCCCChHHH
Q 038919 246 LRQKKVLLVIDDVAHV---EQ----LRRLAGKRDWFGPGSRIIITTRDEHL---------LKLHRVEEVFKLEALTYDEA 309 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~---~~----~~~l~~~~~~~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~L~~~ea 309 (483)
+.+-. +||+||+... .. +-.+...+. ..|..+|+|++.... ........++++++++.++-
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 33333 6789999522 12 323332221 346778888875321 11122335788999999999
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 310 FQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
.+++..++..... ...+++..-+++.+.|..-.+..+-..
T Consensus 172 ~~il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 172 LRALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999866543221 122466777888888877666554433
No 72
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.4e-05 Score=83.78 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=111.5
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...+||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.-..... .....+. ......+.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~-c~~c~~i~ 84 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGT-CEMCRAIA 84 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCcc-CHHHHHHh
Confidence 3689999999999998887542 245678999999999999999998764211000 0000000 11111111
Q ss_pred HHHhc----ccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hH
Q 038919 222 SDLLK----LADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HL 289 (483)
Q Consensus 222 ~~~~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~ 289 (483)
..... .........++.. .+.+.+ .+++-++|+|+++. .+..+.|+..+......+.+|+++.+. .+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11000 0000011111111 122221 13456899999964 355666665555434566666655433 33
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
... ......+.+.+++.++....+...+...... ...+.+..+++.++|.+..+....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 2234578899999999999888776443321 223667889999999997555443
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.53 E-value=2.1e-06 Score=93.16 Aligned_cols=176 Identities=14% Similarity=0.052 Sum_probs=97.8
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc------eeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD------GSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.++..+...|... ...-+.++|++|+|||++|..+++++....- ..+|..++.....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--------
Confidence 68999999999999988753 3345679999999999999999998754321 1223222211100
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH---------HH-HHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE---------QL-RRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---------~~-~~l~~~~~~~~~~~~iliTt 284 (483)
...........+..+.+.+. +.+++|++|+++..- +. ..|.+.+. ....++|-+|
T Consensus 257 -----------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaT 323 (852)
T TIGR03345 257 -----------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAAT 323 (852)
T ss_pred -----------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEec
Confidence 00011112222222222222 468999999985431 11 12333332 2335566665
Q ss_pred CCHhHHh-------hCCCcceEecCCCChHHHHHHHHHhhccCC--CCCchHHHHHHHHHHHhCCC
Q 038919 285 RDEHLLK-------LHRVEEVFKLEALTYDEAFQLFCLKAFETQ--KPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 285 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~ 341 (483)
.....-. .....+.+.|++++.+++.++++.....-. ..-....+....+++.+.+.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 5432211 112346899999999999999754432111 11112234556666666554
No 74
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=7.9e-07 Score=81.25 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=87.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+.+.|+|++|+|||+|++.++.... ..++. . ......+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~----------~~~~~~~~~~~--------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-P----------NEIGSDAANAA--------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-H----------HHcchHHHHhh---------------------
Confidence 46789999999999999999887532 12332 0 00111111110
Q ss_pred HhcCceEEEEcCCCC----HHHHHHHhcCCCCCCCCcEEEEEcCCH---------hHHhhCCCcceEecCCCChHHHHHH
Q 038919 246 LRQKKVLLVIDDVAH----VEQLRRLAGKRDWFGPGSRIIITTRDE---------HLLKLHRVEEVFKLEALTYDEAFQL 312 (483)
Q Consensus 246 l~~~~~LlVlDdv~~----~~~~~~l~~~~~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 312 (483)
.+ -+|++||++. .+.+-.+...+. ..|..+|+|++.. .+...+....++++++++.++-.++
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 01 2788899953 333444433322 3467799988742 2333344557899999999999999
Q ss_pred HHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 038919 313 FCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGS 350 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~ 350 (483)
+.+.+.... -...+++..-|++.+.|..-.+..+-.
T Consensus 162 L~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 162 IFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 998874432 123346778888888888777765433
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-05 Score=77.79 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=105.1
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc--------cceeEEEEecccccccCCcH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE--------FDGSSFLADVKEKYDKEGSV 213 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~ 213 (483)
...++|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... |...++-. .. .... .
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~-~- 89 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNN-S- 89 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCC-C-
Confidence 368899999999999988753 224688999999999999999998876431 11111111 00 0000 0
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcC-CHhHH
Q 038919 214 ISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTR-DEHLL 290 (483)
Q Consensus 214 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR-~~~~~ 290 (483)
......+...+... -..+++-++++|+++.. ..+..++..+......+.+|+++. ...+.
T Consensus 90 ~~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 VDDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HHHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 01111111111000 01234558999999643 445566544433244555555553 32222
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
.. ......+++.+++.++....+...+...... ...+.+..+++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 21 2234578999999999999988766443321 22467888899999977644
No 76
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.51 E-value=1.9e-05 Score=72.74 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=112.5
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh--cccceeEEEEecccccccCCc--H
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS--HEFDGSSFLADVKEKYDKEGS--V 213 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~--~ 213 (483)
.|+....++|-+..+..|.+.+.. ...+....||++|.|||+-|..++..+- +-|++++.-.+.+. ..+. .
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd---erGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD---ERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc---cccccch
Confidence 334447899999999999998875 4578999999999999999999998753 33555554333221 1111 0
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-HH
Q 038919 214 ISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-LL 290 (483)
Q Consensus 214 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~ 290 (483)
..-.+. ...+......... .-....-++|||+++.. +.|..|...+..+...+++++.+..-. +.
T Consensus 106 r~Kik~-fakl~~~~~~~~~-----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 106 REKIKN-FAKLTVLLKRSDG-----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred hhhhcC-HHHHhhccccccC-----------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 000000 0010000000000 00011248999999864 667777776666667777655444322 11
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.. ......+..++|..++...-++..+-..... ...+..+.|++.++|--
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcH
Confidence 11 1223458899999999998888877544432 33467888999998853
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.49 E-value=2.7e-06 Score=80.00 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred HhhhchhHHHHHHHHH---hh-------c---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEEeccccc
Q 038919 143 KELVGIESRLEKLKFL---MG-------A---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVKEKY 207 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~---L~-------~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~ 207 (483)
..++|.+...+.+.+. .. . ..+....+.++|++|+||||+|+.+++.+.... ....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 5688887766665542 21 0 122356788999999999999999998754321 1111111 100
Q ss_pred ccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCC----------HHHHHHHhcCCCCCCCC
Q 038919 208 DKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAH----------VEQLRRLAGKRDWFGPG 277 (483)
Q Consensus 208 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----------~~~~~~l~~~~~~~~~~ 277 (483)
.. +.....+. ........+.. ....+|++|+++. .+.++.++..+......
T Consensus 83 ------~~----l~~~~~g~------~~~~~~~~~~~---a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 ------AD----LVGEYIGH------TAQKTREVIKK---ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred ------HH----hhhhhccc------hHHHHHHHHHh---ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 11 11111110 00111111211 1235889999964 23556666655443344
Q ss_pred cEEEEEcCCHhH---Hh---h--CCCcceEecCCCChHHHHHHHHHhhcc
Q 038919 278 SRIIITTRDEHL---LK---L--HRVEEVFKLEALTYDEAFQLFCLKAFE 319 (483)
Q Consensus 278 ~~iliTtR~~~~---~~---~--~~~~~~~~l~~L~~~ea~~L~~~~~~~ 319 (483)
..+++++..... .. . ......+.+++++.++-.+++.+.+..
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 455555543221 00 0 112346889999999999999877643
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.49 E-value=2.2e-06 Score=92.25 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.+++.+...|... ...-+.++|++|+|||++|+.+++++...- ...+|..++.. +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~----------l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS----------L 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH----------H
Confidence 68999999999999988753 234578999999999999999999874421 22333332111 1
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHV-----------EQLRRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTt 284 (483)
... .....+.+..+..+.+.+ ...+++|++|+++.. +.-+.+.+.+. ....++|-+|
T Consensus 250 ----~a~-----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaT 318 (731)
T TIGR02639 250 ----LAG-----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGST 318 (731)
T ss_pred ----hhh-----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEec
Confidence 000 001122233333333333 346899999999632 22233333332 1233455444
Q ss_pred CCHhHH-------hhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 285 RDEHLL-------KLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 285 R~~~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+..- ........+.+++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432210 011123578999999999999998654
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1.6e-05 Score=85.51 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=109.6
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL 220 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 220 (483)
....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-...... ...+. ......+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---------~pCg~-C~sC~~~ 81 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS---------TPCGE-CDSCVAL 81 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---------CCCcc-cHHHHHH
Confidence 34689999999999999988532 2456889999999999999999987632110000 00000 0000000
Q ss_pred HHH------HhcccCCCccchhhhHHHHHHH-----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC-
Q 038919 221 ISD------LLKLADNSIRNVYDGINMIGRR-----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD- 286 (483)
Q Consensus 221 l~~------~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~- 286 (483)
... +..........+++..+ +.+. ..++.-++|||+++.. +..+.|+..+......+.+|++|.+
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 000 00000000111222211 1111 2345568899999743 5566666666554566666665543
Q ss_pred HhHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 287 EHLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 287 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
..+... ......|++.+++.++..+++.+.+...... ...+....|++.++|.+..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 334332 2345679999999999999988765333221 23355678899999988433
No 80
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.1e-05 Score=73.53 Aligned_cols=261 Identities=21% Similarity=0.236 Sum_probs=147.7
Q ss_pred HHHHHhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHH
Q 038919 139 SEILKELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 215 (483)
|+....|||-++..+.|.=.+.. .....-.+.++|++|.||||||.-+++.+...+.. . -.......+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gD--- 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGD--- 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhh---
Confidence 34457899999888887766653 22235679999999999999999999987665321 0 0000011111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCC--------CCCcE------
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWF--------GPGSR------ 279 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~~~~------ 279 (483)
+..++.. +. ..=++.+|.+... ..-+-+.+....+ +++++
T Consensus 94 -laaiLt~----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 94 -LAAILTN----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred -HHHHHhc----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 1111111 11 1225667877532 1112222222211 33333
Q ss_pred -----EEEEcCCHhHHhhC--CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 280 -----IIITTRDEHLLKLH--RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 280 -----iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
|=-|||.-.+.... ...-+.+++-.+.+|-.+.+.+.+..-. .+...+.+.+|++.+.|-|--..-+-+..
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33488854332221 2334678899999999999988773322 22334678899999999997555444433
Q ss_pred CCCCHHHHHHHHHHhccC--CCc----cHHHHHHHhhcCCcHHHHHHHhhhhcCC--CCCCHHHHHHHHHhCCCChhhhH
Q 038919 353 FGRPVDEWTSTLERLKRE--PEN----EILDILQISFDGLKEAEKEIFLDVACFF--KGEKRDYVSKILDSCGFEPVIGI 424 (483)
Q Consensus 353 ~~~~~~~~~~~l~~l~~~--~~~----~v~~~l~~s~~~L~~~~k~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l 424 (483)
+. + ...... .+. .....|..-=.+|+...+..+..+.-.+ .+.-.+.+...+..+....++.+
T Consensus 228 RD-----f----a~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~ 298 (332)
T COG2255 228 RD-----F----AQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVI 298 (332)
T ss_pred HH-----H----HHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHH
Confidence 21 1 111111 011 1122233333467777777777666655 34567777777655444444444
Q ss_pred H-HHhhCCceeEecCCeEE
Q 038919 425 G-VLIEKSLLTICESDRLW 442 (483)
Q Consensus 425 ~-~L~~~sLi~~~~~~~~~ 442 (483)
+ -|++.|+|+....|+..
T Consensus 299 EPyLiq~gfi~RTpRGR~a 317 (332)
T COG2255 299 EPYLIQQGFIQRTPRGRIA 317 (332)
T ss_pred hHHHHHhchhhhCCCccee
Confidence 4 48999999998888753
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.5e-05 Score=82.08 Aligned_cols=192 Identities=21% Similarity=0.145 Sum_probs=107.8
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..+||-+..++.|.+++..+. -...+.++|++|+||||+|+.++..+.-..... ....+. ......+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pcg~-C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPCGV-CSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC-CHHHHHHhc
Confidence 679999999999999888532 245678999999999999999998763211000 000000 000000000
Q ss_pred ----HHhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHH
Q 038919 223 ----DLLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLL 290 (483)
Q Consensus 223 ----~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~ 290 (483)
.+...........++... +.+.. .+++-++|+|+++.. .....|+..+......+.+|++|.++ .+.
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~-l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRE-LLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred CCCCceeEeeccccCCHHHHHH-HHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 000000000111111111 11111 245669999999744 44566665555445566666655443 222
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVL 348 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 348 (483)
.. ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+- ++..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 1223568999999999998887766433221 233567888999999885 44433
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2e-05 Score=81.26 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=112.6
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|-+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-...... ....+. ......+.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~-C~sC~~i~ 83 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNT-CEQCRKVT 83 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcc-cHHHHHHh
Confidence 4678999998899999887532 256888999999999999999998663211000 000000 00011110
Q ss_pred HHH----hcccCCCccchhhhHHHHHHH-----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC-HhH
Q 038919 222 SDL----LKLADNSIRNVYDGINMIGRR-----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD-EHL 289 (483)
Q Consensus 222 ~~~----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~ 289 (483)
... ..........+++ +..+.+. ..+++-++|||+++.. +....|+..+........+|++|.+ ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 000 0000000001111 1112222 2345679999999643 5566666665433455666665554 333
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP-LALKVLGSFL 352 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~la~~l 352 (483)
... ......+++.+++.++....+...+..... ....+.++.|++.++|.+ .|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 223457899999999999999876644322 123466788999999976 5776665443
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.6e-05 Score=81.05 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=110.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc-ccce--eEEEEecccccccCCcHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH-EFDG--SSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~--~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
...+||-+...+.|...+..+. -...+.++|+.|+||||+|+.+++.+-. .... .|..+ ....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C-------------~~C~ 78 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC-------------IQCQ 78 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc-------------HHHH
Confidence 4689999999999999887542 2457789999999999999999987632 1110 00000 0000
Q ss_pred HHHHH----HhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh
Q 038919 219 QLISD----LLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH 288 (483)
Q Consensus 219 ~ll~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~ 288 (483)
.+... +...........++..+.+... ..+++-++|+|+++. .+....|+..+....+.+++|++|.++.
T Consensus 79 ~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 79 SALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred HHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 00000 0000000001122222222110 013456899999964 4556666655554456777777776542
Q ss_pred -HHh-hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 289 -LLK-LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 289 -~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
+.. .......+++.+++.++..+.+...+...... ...+.+..|++.++|.+.-+..+
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 211 12234678999999999999998766443322 23467788999999998555443
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.3e-05 Score=76.10 Aligned_cols=191 Identities=17% Similarity=0.126 Sum_probs=108.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-----cceeEEEEecccccc--cCCcHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVKEKYD--KEGSVI 214 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~~~ 214 (483)
...++|-+...+.|.+++..+. -...+.++|+.|+||||+|+.++..+... .++... .++..... ..++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~-- 90 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDL-- 90 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcE--
Confidence 3678999999999999998542 24567899999999999999999875421 011100 00000000 0000
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC-
Q 038919 215 SLQKQLISDLLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD- 286 (483)
Q Consensus 215 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~- 286 (483)
...........++ +..+.+.+ .+++-++|+|+++.. +....|+..+....+...+|++|.+
T Consensus 91 ----------~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 91 ----------IEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred ----------EEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 0000000011111 11222222 245669999999743 4455665555443445555555433
Q ss_pred HhHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 287 EHLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 287 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
..+... ......+.+.+++.++....+...+-..... ...+.+..+++.++|.+..+..+.
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333222 2234578999999999999988866433221 233567788999999886554443
No 85
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.41 E-value=5.1e-06 Score=84.08 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=89.9
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc-----eeEEEEecccc
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-----GSSFLADVKEK 206 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~ 206 (483)
..+.|.+..++++.+.+.. +-..++-+.|+|++|+|||++|+.+++.+...+. ...|+ ++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-eccch
Confidence 5678899999888876531 1123456899999999999999999998765421 12222 22210
Q ss_pred cccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH-HhcCceEEEEcCCCCHH--------------HHHHHhcCC
Q 038919 207 YDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR-LRQKKVLLVIDDVAHVE--------------QLRRLAGKR 271 (483)
Q Consensus 207 ~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--------------~~~~l~~~~ 271 (483)
. ++....+. ............+.. ..+++++|+||+++... .+..|+..+
T Consensus 261 --------e----Ll~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 --------E----LLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred --------h----hcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 0 11110000 000111111112221 23579999999996431 123344333
Q ss_pred CCC--CCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhc
Q 038919 272 DWF--GPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 272 ~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
... ..+..||.||..+..+. ....+..+++++.+.++..++|..+..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 321 13445555665443221 123455689999999999999988863
No 86
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.39 E-value=6.6e-06 Score=79.81 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=87.3
Q ss_pred chHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHH
Q 038919 137 TESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 137 ~~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
+.|.-...++|.+...+.+..++..+ .-..++.++|++|+|||++|..+++..... +...+... ... ..+
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~----~~~i~~~~----~~~-~~i 84 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE----VLFVNGSD----CRI-DFV 84 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc----ceEeccCc----ccH-HHH
Confidence 34455578999999999999988743 235677789999999999999999876322 12222211 111 111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH---HHHHHHhcCCCCCCCCcEEEEEcCCHhHH-h-
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV---EQLRRLAGKRDWFGPGSRIIITTRDEHLL-K- 291 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTtR~~~~~-~- 291 (483)
. ..+....... .+.+.+-++|+|+++.. +....+...+.....++++|+||...... .
T Consensus 85 ~-~~l~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 85 R-NRLTRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred H-HHHHHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 1 1111111000 01134568999999744 22222322223335677888888754321 1
Q ss_pred hCCCcceEecCCCChHHHHHHHHH
Q 038919 292 LHRVEEVFKLEALTYDEAFQLFCL 315 (483)
Q Consensus 292 ~~~~~~~~~l~~L~~~ea~~L~~~ 315 (483)
.......+.++..+.++..+++..
T Consensus 148 l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHhhceEEEeCCCCHHHHHHHHHH
Confidence 112234677888888888776654
No 87
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=1.5e-05 Score=80.45 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccce-eEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG-SSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|++|+|||.|+..+++.+...++. .+.+.+. ..+...+...+.. ... ..+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~------~~~----~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKE------GKL----NEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhc------ccH----HHHHH
Confidence 4569999999999999999999987765432 3333311 2333333333211 111 12333
Q ss_pred HHhcCceEEEEcCCCCH-------HHHHHHhcCCCCCCCCcEEEEEcC-CHhHHh--------hCCCcceEecCCCChHH
Q 038919 245 RLRQKKVLLVIDDVAHV-------EQLRRLAGKRDWFGPGSRIIITTR-DEHLLK--------LHRVEEVFKLEALTYDE 308 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~~~iliTtR-~~~~~~--------~~~~~~~~~l~~L~~~e 308 (483)
..+...-+|++||++.. +.+-.++..+. ..+..||+||. .+.-+. ......++.+++.+.+.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 34445668999999632 12222222221 23456888874 432221 12334578899999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
-.+++.+.+..... ...++++.-|++.+.|+--.|.-+
T Consensus 268 r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 268 RKKIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHHH
Confidence 99999888743222 123467888899988887666543
No 88
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.38 E-value=0.00033 Score=68.43 Aligned_cols=274 Identities=18% Similarity=0.185 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHH-HHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHH--
Q 038919 148 IESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLA-RVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDL-- 224 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-- 224 (483)
|.+.+++|..||....+ ..|.|.||-|+||+.|+ .++.+. .+. +.+.++.+.....+- ..+...+..++
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~----r~~-vL~IDC~~i~~ar~D-~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKD----RKN-VLVIDCDQIVKARGD-AAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhC----CCC-EEEEEChHhhhccCh-HHHHHHHHHhcCC
Confidence 56778999999986544 68999999999999999 666553 222 333334333221211 22222222111
Q ss_pred ---------------------hcccCCCccchhhhHH--------HHHHH-------------------Hh---cCceEE
Q 038919 225 ---------------------LKLADNSIRNVYDGIN--------MIGRR-------------------LR---QKKVLL 253 (483)
Q Consensus 225 ---------------------~~~~~~~~~~~~~~~~--------~l~~~-------------------l~---~~~~Ll 253 (483)
.+....-..+.+..+. .++.. +. ..+-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1111110111111111 11110 00 125689
Q ss_pred EEcCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEcCCHhHHh----hC--CCcceEecCCCChHHHHHHHHHh
Q 038919 254 VIDDVAHV-----------EQLRRLAGKRDWFGPGSRIIITTRDEHLLK----LH--RVEEVFKLEALTYDEAFQLFCLK 316 (483)
Q Consensus 254 VlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~----~~--~~~~~~~l~~L~~~ea~~L~~~~ 316 (483)
|+||+... .+|...+-. .+--+||++|-+..... .+ ...+.+.|.-.+.+.|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99999321 223332222 44568888887653322 22 24467889999999999999988
Q ss_pred hccCCCC------------------CchHHHHHHHHHHHhCCChHHHHHHHHHhCCC-CHHHHHHHHHHhccCCCccHHH
Q 038919 317 AFETQKP------------------REEYVHLSQLVVNYAGGLPLALKVLGSFLFGR-PVDEWTSTLERLKREPENEILD 377 (483)
Q Consensus 317 ~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~-~~~~~~~~l~~l~~~~~~~v~~ 377 (483)
+...... .....+-....++.+||--.=|+.+++.++.. ++. .+++.+ ...++..
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~---~Av~~i---I~qsa~e 302 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE---EAVEEI---ISQSASE 302 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH---HHHHHH---HHHHHHH
Confidence 8543110 01244556777888999999999999888653 222 222221 1112222
Q ss_pred HHHHhhc-------CCcHHHHHHHhhhhcCCCCCCHHHHHHHHHhCCC--ChhhhHHHHhhCCceeEec-CCe
Q 038919 378 ILQISFD-------GLKEAEKEIFLDVACFFKGEKRDYVSKILDSCGF--EPVIGIGVLIEKSLLTICE-SDR 440 (483)
Q Consensus 378 ~l~~s~~-------~L~~~~k~~l~~la~f~~~~~~~~l~~~~~~~~~--~~~~~l~~L~~~sLi~~~~-~~~ 440 (483)
+.+.-+. .++-...+.+..+-.+.......+=.-++ .+.| ..+.+|+.|.+..||++.. +|+
T Consensus 303 I~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~-~~lFk~~~E~~L~aLe~aeLItv~~~~G~ 374 (431)
T PF10443_consen 303 IRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLL-SPLFKGNDETALRALEQAELITVTTDNGR 374 (431)
T ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHc-ccccCCCChHHHHHHHHCCcEEEEecCCc
Confidence 2222222 11112233333333333222222222222 1122 2456899999999999754 444
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.37 E-value=1.3e-05 Score=87.26 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=87.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-c-----ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-F-----DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.+++.+.+.|... ..+-+.++|++|+|||++|..++.++... - ...+|..+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~----------- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL----------- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH-----------
Confidence 57899999999999999753 23456799999999999999999987532 1 12333332211
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCHH---------HHHH-HhcCCCCCCCCcEEEEEcC
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHVE---------QLRR-LAGKRDWFGPGSRIIITTR 285 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~-l~~~~~~~~~~~~iliTtR 285 (483)
+... .....+.++.+..+.+.+ ..++++|++|+++..- .... |.+.+. ....++|.+|.
T Consensus 246 -------l~ag-~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt 315 (821)
T CHL00095 246 -------LLAG-TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATT 315 (821)
T ss_pred -------Hhcc-CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCC
Confidence 1110 011122233333333322 3568999999995321 1122 222222 22345565555
Q ss_pred CHhHHh-------hCCCcceEecCCCChHHHHHHHHHh
Q 038919 286 DEHLLK-------LHRVEEVFKLEALTYDEAFQLFCLK 316 (483)
Q Consensus 286 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 316 (483)
.+..-. .......+.++..+.++...++...
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 443211 1123356789999999988887643
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.37 E-value=1.7e-05 Score=79.62 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=92.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccc-eeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|++|+|||.|+.++++.+....+ ..+.+.+. ..+...+...+... .. ..+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~----------~~~~~~~~~~~~~~------~~----~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS----------EKFTNDFVNALRNN------KM----EEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH----------HHHHHHHHHHHHcC------CH----HHHHH
Confidence 456899999999999999999998876543 22222211 22233333332211 11 22333
Q ss_pred HHhcCceEEEEcCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcCCH-hHH--------hhCCCcceEecCCCChHHHH
Q 038919 245 RLRQKKVLLVIDDVAHV----EQLRRLAGKRDW-FGPGSRIIITTRDE-HLL--------KLHRVEEVFKLEALTYDEAF 310 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTtR~~-~~~--------~~~~~~~~~~l~~L~~~ea~ 310 (483)
.+++ .-+|+|||++.. ...+.++..+.. ...+..+|+|+... ..+ ..+.....+.+++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3333 348899999632 111222221110 02355677777642 211 12223346899999999999
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 311 QLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
+++...+..... ...++....|++.+.|+.-.|.-+
T Consensus 275 ~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 275 AILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 999988754322 223467888888999888765543
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.34 E-value=1.3e-05 Score=81.62 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=93.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccce-eEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG-SSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|++|+|||+|+..+++.+...++. .+.+.+. ..+...+...+.. ... ..+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~~~~~~------~~~----~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFVNALRN------NTM----EEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHc------CcH----HHHHH
Confidence 4568999999999999999999998776533 2222211 2222333333211 011 22333
Q ss_pred HHhcCceEEEEcCCCCH----HHHHHHhc---CCCCCCCCcEEEEEcCCHh---------HHhhCCCcceEecCCCChHH
Q 038919 245 RLRQKKVLLVIDDVAHV----EQLRRLAG---KRDWFGPGSRIIITTRDEH---------LLKLHRVEEVFKLEALTYDE 308 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~----~~~~~l~~---~~~~~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~e 308 (483)
.++ +.-+|+|||++.. ...+.++. .+. ..+..+|+||.... +...+....++++++++.++
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 444 3458999999532 11122222 211 23456777776431 12223344578999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
-.+++...+.... ..-.+++..-|++.+.|..-.|.-+
T Consensus 285 r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 285 RIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 9999998875422 1233467888999999988765433
No 92
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=4.6e-05 Score=79.92 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=107.7
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..++|-+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-.......+ . . .........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~--------~---p-C~~C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL--------E---P-CQECIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC--------C---c-hhHHHHhhc
Confidence 689999999999999987542 25677899999999999999999865321110000 0 0 000000000
Q ss_pred H---HhcccCCCccchhhhHHHHHHHHh-----cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-CCHhHHh
Q 038919 223 D---LLKLADNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITT-RDEHLLK 291 (483)
Q Consensus 223 ~---~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTt-R~~~~~~ 291 (483)
. +...........++ +..+.+.+. +++-++|+|+++. ......|+..+......+.+|++| ....+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 00000000011111 122222222 4566899999964 355666666555434555555444 4444432
Q ss_pred h-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 038919 292 L-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL-ALKVL 348 (483)
Q Consensus 292 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 348 (483)
. ......+++.+++.++..+.+...+...... ...+.+..++..++|.+. |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 3344689999999999999888765332211 223557789999999775 44433
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=0.00011 Score=76.91 Aligned_cols=192 Identities=17% Similarity=0.126 Sum_probs=107.8
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|-+...+.|...+..+. -...+.++|+.|+||||+|..++..+.-.....- ...+. . ......+.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~-----~~~Cg---~-C~sC~~~~ 85 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD-----GEACN---E-CESCVAFN 85 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-----CCCCC---c-chHHHHHh
Confidence 3689999999999999987532 2467899999999999999999986631110000 00000 0 00000000
Q ss_pred HH----HhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEc-CCHhHH
Q 038919 222 SD----LLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITT-RDEHLL 290 (483)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTt-R~~~~~ 290 (483)
.. +...........++....+... ..+.+=++|+|+++.. .....|+..+.....++.+|++| ....+.
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 00 0000000011112222222111 1134458899999643 45666666555444566665544 444444
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
.. ......+++.+++.++....+...+...... ...+.+..|++.++|..--+
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 32 3345679999999999999998766443322 22356788999999977544
No 94
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.4e-05 Score=75.15 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=106.8
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccce----eEEEE-ecccccccCCcHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG----SSFLA-DVKEKYDKEGSVISL 216 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~----~~~~~-~~~~~~~~~~~~~~l 216 (483)
...++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+...-.. .|-.+ ++.........
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~---- 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL---- 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC----
Confidence 3689999999999999887432 24678899999999999999999876322000 00000 00000000000
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHH-----HhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC-Hh
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRR-----LRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD-EH 288 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~ 288 (483)
.+....+......++.. .+.+. ..+.+-++|+|+++.. +....|+..+....+.+.+|++|.+ ..
T Consensus 91 ------d~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 91 ------DVLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred ------ceEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 00000000001111111 11111 1255678999999643 4455565555543456666666543 32
Q ss_pred HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 289 LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 289 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
+... ......+++.+++.++....+...+..... ....+.+..++..++|.+.-+
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 223457899999999999988876543221 123466888999999987533
No 95
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.33 E-value=0.00015 Score=74.71 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=93.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc-eeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
..+.|+|..|+|||.|+.++++.....+. ..+.+... ..+...+...+... . ...+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~~------~----~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRDG------K----GDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHhc------c----HHHHHHH
Confidence 45899999999999999999998765432 22332211 23333333332110 1 1223333
Q ss_pred HhcCceEEEEcCCCCH-------HHHHHHhcCCCCCCCCcEEEEEcCCH---------hHHhhCCCcceEecCCCChHHH
Q 038919 246 LRQKKVLLVIDDVAHV-------EQLRRLAGKRDWFGPGSRIIITTRDE---------HLLKLHRVEEVFKLEALTYDEA 309 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea 309 (483)
+++ .-+|||||++.. +.+-.++..+. ..+..|||||... .+...+...-++.|.+.+.+.-
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 333 347889999532 22223332222 3456788888752 2223334556789999999999
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 310 FQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.+++.+++..... ....+++.-|++.+.++.-.|.-+
T Consensus 452 ~aIL~kka~~r~l--~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 452 IAILRKKAVQEQL--NAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 9999988754322 233467777888888776655543
No 96
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.31 E-value=3e-05 Score=76.86 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=98.2
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+...+++.+.+.. +-..++-+.++|++|+|||+||+.+++.....| +.+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~-------- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G-------- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h--------
Confidence 5788999888888875531 112356799999999999999999998765432 1111 0
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC-
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF- 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 274 (483)
..+ .....+. ........+.......+.+|+||+++.. ..+..++..+..+
T Consensus 213 --s~l----~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 --SEF----VQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --HHH----HHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111 1111110 0111112222333467899999998632 1122333332211
Q ss_pred -CCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 -GPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 -~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||+||.....+. ....+..+.++..+.++-.++|..+........+ -....+++.+.|..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d---vd~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE---VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc---cCHHHHHHHcCCCC
Confidence 24567788887554322 1234567899999999988888876543222111 11445666666653
No 97
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=4.8e-05 Score=79.63 Aligned_cols=197 Identities=18% Similarity=0.129 Sum_probs=110.0
Q ss_pred HHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHH
Q 038919 140 EILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 140 ~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
.....++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+--......- ....+. ......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-------~~~Cg~-C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-------PEPCGK-CELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-------CCCCcc-cHHHHH
Confidence 334689999999999999988542 24578899999999999999999876432110000 000000 111111
Q ss_pred HHHHHh----cccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-
Q 038919 220 LISDLL----KLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE- 287 (483)
Q Consensus 220 ll~~~~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~- 287 (483)
+..... ..........+...+.+ +.+ .+++-++|+|+++.. +....|+..+..-...+.+|++|.+.
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 111000 00000011111111111 111 244568999999743 55666666555434455555555443
Q ss_pred hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 288 HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 288 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.+... ......+++.+++.++....+...+...... ...+.+..+++.++|.+..+..+
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 2234578889999999888887766432211 22356788999999988655443
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=4.3e-05 Score=79.03 Aligned_cols=187 Identities=17% Similarity=0.128 Sum_probs=110.9
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-----cceeEEEEecccccccCCcHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
...++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. .++... ..
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C---------------~~ 78 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC---------------SS 78 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc---------------hH
Confidence 3689999999999999987532 35678999999999999999999876421 111000 00
Q ss_pred HHHHHHH----HhcccCCCccchhhhHHHH---HH-HHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC
Q 038919 217 QKQLISD----LLKLADNSIRNVYDGINMI---GR-RLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD 286 (483)
Q Consensus 217 ~~~ll~~----~~~~~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~ 286 (483)
...+... +...........++..... .. -..+++-++|+|+++.. .....|+..+....+.+.+|++|.+
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0010000 0000000001112211111 11 11345668999999643 5567777666654566666666654
Q ss_pred H-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 287 E-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 287 ~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
. .+... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+..+.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3 33222 2234568999999999999998776443322 234667889999999885443
No 99
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=2.9e-05 Score=75.46 Aligned_cols=201 Identities=20% Similarity=0.226 Sum_probs=114.0
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccce-eEEEEecccccccCCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG-SSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
..++||+.++..+.+++.. ..+..+.+-|.|-+|.|||.+...++.+....... .....|..... ....++..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~----~~~aiF~k 225 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT----EASAIFKK 225 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc----chHHHHHH
Confidence 5789999999999998875 33456789999999999999999999887766554 21222222212 22566666
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHhc--CceEEEEcCCCCHHHH--HHHhcCCCCC-CCCcEEEEEcCC------Hh
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLRQ--KKVLLVIDDVAHVEQL--RRLAGKRDWF-GPGSRIIITTRD------EH 288 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~--~~l~~~~~~~-~~~~~iliTtR~------~~ 288 (483)
+...+.......... .+....+...... ..+|+|+|..|....- ..+...+.|- -+++++|+.--- +.
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 666654333322222 3333344444433 3689999999755321 1111111111 345555542211 11
Q ss_pred HHhhCC-----CcceEecCCCChHHHHHHHHHhhccCCCCC---chHHHHHHHHHHHhCCChHHHHHH
Q 038919 289 LLKLHR-----VEEVFKLEALTYDEAFQLFCLKAFETQKPR---EEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 289 ~~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.+.... ....+..+|.+.++-.++|..+........ ...+-.+++++...|.+--||.+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 222221 235678899999999999998874433221 122233444444444444555444
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.30 E-value=2.5e-05 Score=85.12 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=86.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.++..+...|... ....+.++|++|+|||+||..++.++.... ...++..++.....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-------- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh--------
Confidence 67999999999999988753 334577999999999999999999875421 12333322221100
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHH--hcCceEEEEcCCCCHH----------HHHHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRL--RQKKVLLVIDDVAHVE----------QLRRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~iliTt 284 (483)
+ ..........+..+...+ .+.+++|++|+++... .-+-|.+.+. ....++|-+|
T Consensus 248 ---------g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaT 314 (857)
T PRK10865 248 ---------G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGAT 314 (857)
T ss_pred ---------c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcC
Confidence 0 000111222222222222 2578999999996442 2223333332 2234555555
Q ss_pred CCHhHH-------hhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 285 RDEHLL-------KLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 285 R~~~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+..- ......+.+.+...+.++...+++...
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 443321 011123356677778899988886554
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.30 E-value=2.1e-05 Score=86.11 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=87.7
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.++..+...|... ....+.++|++|+|||++|..+++++...+ ...+|..++.. +
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------L 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------H
Confidence 57999999999999988754 234566899999999999999999875431 12233322111 0
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHh--cCceEEEEcCCCCHH----------HHHHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLR--QKKVLLVIDDVAHVE----------QLRRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~iliTt 284 (483)
+. + .....+....+..+...+. +++++|++|+++... ..+.|.+.+. ....++|.+|
T Consensus 241 ----~a---~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaT 309 (852)
T TIGR03346 241 ----IA---G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGAT 309 (852)
T ss_pred ----hh---c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeC
Confidence 00 0 0001122222233333332 468999999996432 2222333322 2234455555
Q ss_pred CCHhHHh-------hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 285 RDEHLLK-------LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 285 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+..-. .......+.++..+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4333211 11233567899999999999987653
No 102
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.3e-05 Score=73.14 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=61.0
Q ss_pred ceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCc
Q 038919 250 KVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPRE 325 (483)
Q Consensus 250 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 325 (483)
+-++|+|+++. .+....|+..+..-.+++.+|++|.+.. +++. ......+.+.+++.+++.+.+...... .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--~--- 181 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--S--- 181 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--C---
Confidence 33557799974 4566666665554456777777777653 3322 234467999999999999999765411 1
Q ss_pred hHHHHHHHHHHHhCCChHHHHHH
Q 038919 326 EYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 326 ~~~~~~~~i~~~~~G~PLal~~l 348 (483)
..+.+..++..++|.|+....+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233566788999999755444
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.28 E-value=1.4e-05 Score=79.85 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=97.8
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+.+++++.+.+.. +-....-+.|+|++|+|||++|+.+++.....|- .+. .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~-------- 250 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-G-------- 250 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-c--------
Confidence 5678999999998886642 1123456889999999999999999997765431 111 0
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH----------------HHHHHhcCCCCC-
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE----------------QLRRLAGKRDWF- 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 274 (483)
..+.. ...+. ........+.....+.+.+|+||+++... .+..++..+..+
T Consensus 251 --seL~~----k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 251 --SELIQ----KYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred --chhhh----hhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 01111 11110 00111122222334678899999984321 122233222211
Q ss_pred -CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 -GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 -~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..+..||.||.....+.. ......+.++..+.++..++|..+......... -....++..+.|.-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 235678888875543322 124567899999999999999877644322111 11344555555543
No 104
>PRK06620 hypothetical protein; Validated
Probab=98.26 E-value=2.2e-05 Score=71.09 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=81.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
+.+.|+|++|+|||+|++.+++.... .+... ..... ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~-----------~~~~~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD-----------IFFNE-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch-----------hhhch-------------------------hHH
Confidence 67999999999999999987775421 12110 00000 001
Q ss_pred hcCceEEEEcCCCCHH--HHHHHhcCCCCCCCCcEEEEEcCCHhH-------HhhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 247 RQKKVLLVIDDVAHVE--QLRRLAGKRDWFGPGSRIIITTRDEHL-------LKLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
+ ..-+|++||++..+ .+-.+...+. ..|..+|+|++.+.. ...+...-++++++++.++-..++.+.+
T Consensus 84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1 23478899997543 2333332222 346688998874422 2223344579999999999888887776
Q ss_pred ccCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 038919 318 FETQKPREEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
.... -...+++.+-|++.+.|.--.+.-+
T Consensus 161 ~~~~--l~l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 161 SISS--VTISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred HHcC--CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 4221 1123466777888887776555443
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=0.00041 Score=66.69 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=108.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc---------------cceeEEEEeccccc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE---------------FDGSSFLADVKEKY 207 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 207 (483)
..++|-+...+.+.+.+..+. -.+...++|+.|+||+++|..+++.+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468999999999999887542 25789999999999999999999875321 2222333211000
Q ss_pred ccCCcHHHHHHHHHHHHh-cccCCCccchhhhHHHHHHHHh-----cCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcE
Q 038919 208 DKEGSVISLQKQLISDLL-KLADNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSR 279 (483)
Q Consensus 208 ~~~~~~~~l~~~ll~~~~-~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ 279 (483)
..... . ........ .......-.+++ +..+.+.+. +.+-++|+|+++.. .....|+..+..-+ .+.
T Consensus 82 ~g~~~-~---~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKLI-T---ASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccccc-c---hhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 00000 0 00000000 000000001111 222333332 45668999999643 44555555444334 445
Q ss_pred EEEEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 038919 280 IIITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLG 349 (483)
Q Consensus 280 iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la 349 (483)
+|++|.+. .+++. ......+++.+++.++..+.+........ . ......++..++|.|.....+.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~---~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L---NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c---hhHHHHHHHHcCCCHHHHHHHH
Confidence 55554443 33332 23456899999999999999987642111 1 1113578899999997665443
No 106
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00015 Score=65.44 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=101.2
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
++.+++.++|.-|+|||.+.+.....+...--..+.+. .+.-....+...+...+.. ....+.......+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~---~p~~~~~~~~e~~~ 119 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLES---QPKVNVNAVLEQID 119 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhcc---CccchhHHHHHHHH
Confidence 34579999999999999999955554432211222221 1111114444445545433 23333333333333
Q ss_pred HHH-----hcCc-eEEEEcCCCCH-----HHHHHHhcCCCCCCCCcEEEEEcCCH-------hHHhh-CCCcce-EecCC
Q 038919 244 RRL-----RQKK-VLLVIDDVAHV-----EQLRRLAGKRDWFGPGSRIIITTRDE-------HLLKL-HRVEEV-FKLEA 303 (483)
Q Consensus 244 ~~l-----~~~~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iliTtR~~-------~~~~~-~~~~~~-~~l~~ 303 (483)
+.+ ++++ +.+++|+..+. +.++-|...-...+..-+|+..-..+ ..... .....+ |+++|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 322 3455 99999999543 44444444333222223344433211 11111 112223 89999
Q ss_pred CChHHHHHHHHHhhccCCCCCch-HHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 304 LTYDEAFQLFCLKAFETQKPREE-YVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 304 L~~~ea~~L~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
++.++...+++.+..+...+.+. ..+....|.....|.|.++..++..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999998887665433332 3466788999999999999887654
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=7.7e-06 Score=87.16 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=86.7
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc------ceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 216 (483)
++++||+.+++.+.+.|.... ..-+.++|++|+|||++|+.+++++...- ...+|..+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~------------- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI------------- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH-------------
Confidence 579999999999999888632 24457899999999999999998764321 112221110
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCH----------HHHHH-HhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHV----------EQLRR-LAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~-l~~~~~~~~~~~~iliTt 284 (483)
..+ .. ......+.+.....+...+ ...+.+|+||+++.. ..... +.+.+. ....++|-+|
T Consensus 251 -~~l----la-G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgAT 322 (758)
T PRK11034 251 -GSL----LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_pred -HHH----hc-ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecC
Confidence 011 10 0011122233333333333 356789999999532 12222 222221 2234455555
Q ss_pred CCHhHHh-------hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 285 RDEHLLK-------LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 285 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+.... .....+.+.+++++.+++.+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4332210 11233579999999999999998543
No 108
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=0.0002 Score=74.47 Aligned_cols=190 Identities=15% Similarity=0.122 Sum_probs=107.0
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
...++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.++..+-..-+.. ..+.+. ......+.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~-C~~C~~i~ 83 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNE-CEICKAIT 83 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCc-cHHHHHHh
Confidence 3689999999999999988542 246788899999999999999998653211000 000000 00111110
Q ss_pred HH----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCC-HhH
Q 038919 222 SD----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRD-EHL 289 (483)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~ 289 (483)
.. +...........++ +..+.+.. .++.-++|+|+++.. .....|+..+..-...+.+|++|.+ ..+
T Consensus 84 ~g~~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred cCCCCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 00 00000000011111 11122221 245668899999743 5566666655543445555554443 333
Q ss_pred Hhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 290 LKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 290 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+.-+
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222 2234568899999999999988776433221 22356778888999887543
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.21 E-value=0.00026 Score=64.09 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=40.3
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.++|.+.+.+.|.+-... ......-+.+||..|+|||+|++++.+.+...
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 6899999999998864322 11234568889999999999999999987765
No 110
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=5.3e-05 Score=76.32 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=86.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
..+.|+|++|+|||+|+..+++.+.......+++. . ..+...+...+.. .. ...++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~----------~~f~~~~~~~l~~------~~----~~~f~~~~ 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S----------ELFTEHLVSAIRS------GE----MQRFRQFY 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------HHHHHHHHHHHhc------ch----HHHHHHHc
Confidence 56889999999999999999998765433334433 1 2222233333211 01 12233333
Q ss_pred hcCceEEEEcCCCCH-------HHHHHHhcCCCCCCCCcEEEEEcCC-HhH--------HhhCCCcceEecCCCChHHHH
Q 038919 247 RQKKVLLVIDDVAHV-------EQLRRLAGKRDWFGPGSRIIITTRD-EHL--------LKLHRVEEVFKLEALTYDEAF 310 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~~~iliTtR~-~~~--------~~~~~~~~~~~l~~L~~~ea~ 310 (483)
+ ..-+|++||+... +.+-.++..+. ..|..||+||.. +.. ...+...-.+.+.+++.++-.
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 3 3458889998432 12222222211 235678888754 221 222333467899999999999
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 311 QLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.++.+.+..... ....++..-|+..+.++-
T Consensus 278 ~iL~~k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 278 SFLERKAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 999887744321 223456666777777664
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.21 E-value=2.7e-05 Score=73.90 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=71.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
-+.++|++|+|||++|+.+++.+.... ....|+. +. . .. +...+.+.. . ......+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~-------~-~~----l~~~~~g~~---~---~~~~~~~~~- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VT-------R-DD----LVGQYIGHT---A---PKTKEILKR- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ec-------H-HH----HhHhhcccc---h---HHHHHHHHH-
Confidence 588999999999999998887665321 1112222 10 0 11 122221111 0 111112222
Q ss_pred HhcCceEEEEcCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhC--------CCcceEecCCCCh
Q 038919 246 LRQKKVLLVIDDVAHV-----------EQLRRLAGKRDWFGPGSRIIITTRDEHLLKLH--------RVEEVFKLEALTY 306 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~--------~~~~~~~l~~L~~ 306 (483)
-.+-+|+||+++.. +....|+..+.....+.+||+++.....-... .....+.+++++.
T Consensus 120 --a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 120 --AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred --ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 13468999999632 23445555444334566777776543221110 1235689999999
Q ss_pred HHHHHHHHHhhcc
Q 038919 307 DEAFQLFCLKAFE 319 (483)
Q Consensus 307 ~ea~~L~~~~~~~ 319 (483)
+|-.+++...+-.
T Consensus 198 edl~~I~~~~l~~ 210 (284)
T TIGR02880 198 AELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 112
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.20 E-value=6.1e-05 Score=77.58 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=98.6
Q ss_pred HhhhchhHHHHHHHHHhh---c-------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMG---A-------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++...... ++..+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----~~~i~~--------- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSISG--------- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC----eeeccH---------
Confidence 678888877666655432 1 12224568999999999999999999864322 111110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF-- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 274 (483)
..+. ....+. ........+.......+.+|+||+++.. ..+..++..+..+
T Consensus 122 -~~~~----~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 -SDFV----EMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -HHHH----HHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111 111110 1111222333344567899999999543 1223333333221
Q ss_pred CCCcEEEEEcCCHhH-----HhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHHHH
Q 038919 275 GPGSRIIITTRDEHL-----LKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALKVL 348 (483)
Q Consensus 275 ~~~~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 348 (483)
..+..||.||..+.. ......+..+.++..+.++-.+++..++....... ......+++.+.|. +--|..+
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 234456666665432 11123456789999999999999988764432221 12245777778774 3444433
No 113
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=2.1e-05 Score=72.41 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
+..+.+....-..+...+.++|.+|+|||+||.++++.+......++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3344444432222345789999999999999999999886654444444
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=0.00013 Score=76.27 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=106.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
..+||.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..-... ....+. ......+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~c~~-c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEPCNV-CPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCCCCc-cHHHHHHhc
Confidence 689999999999999887532 246678999999999999999998653210000 000000 000000000
Q ss_pred H----HhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcC-CHhHH
Q 038919 223 D----LLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTR-DEHLL 290 (483)
Q Consensus 223 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR-~~~~~ 290 (483)
. +...........++ +..+.+.+ .++.-++|+|+++.. .....|+..+....+.+.+|++|. ...+.
T Consensus 85 g~~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0 00000000011111 11122222 234458899999643 445566655544345666665554 33343
Q ss_pred hh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 038919 291 KL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP-LALKVL 348 (483)
Q Consensus 291 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l 348 (483)
.. ......+++.+++.++....+...+...... ...+.+..|++.++|.. .++..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2234568899999999988887765433221 22356778889999976 444444
No 115
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.7e-05 Score=71.65 Aligned_cols=172 Identities=15% Similarity=0.266 Sum_probs=100.5
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
...=|.+.++++|.+.... +=..++=|.+||+||.|||-||++++++....| +.-++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 4566888999998886542 112356689999999999999999999765543 32111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH-hcCceEEEEcCCCCH----------------HHHHHHhcCCCCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL-RQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF 274 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 274 (483)
..+.+ ...+.+ ...+..+.+.. .+.+++|.+|.++.. ..+-.|+..+.-|
T Consensus 219 --SElVq----KYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 --SELVQ----KYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred --HHHHH----HHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 22222 222221 11222222222 367999999998532 1133444444433
Q ss_pred C--CCcEEEEEcCCHh-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 275 G--PGSRIIITTRDEH-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 275 ~--~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
. .+.+||..|...+ ++.....++.++++.-+.+.-.++|.-+...-....+. -.+.+++.|.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~s 357 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFS 357 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCc
Confidence 3 4568887766443 33344566788998666666677777666432221111 1455666677764
No 116
>CHL00176 ftsH cell division protein; Validated
Probab=98.19 E-value=6.7e-05 Score=78.66 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=98.0
Q ss_pred HhhhchhHHHHHHHHHh---hcC-------CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLM---GAG-------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L---~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+++|.++..+++.+.+ ... ....+-+.++|++|+|||+||+.++...... ++..+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p----~i~is~--------- 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP----FFSISG--------- 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eeeccH---------
Confidence 56888887666666543 221 1124568999999999999999999865322 111111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF-- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 274 (483)
..+.. ...+. ........+.......+++|+|||++.. ..+..++..+..+
T Consensus 250 -s~f~~----~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 -SEFVE----MFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHHHH----Hhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11111 00000 1112223344445578999999999643 1244444333221
Q ss_pred CCCcEEEEEcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC
Q 038919 275 GPGSRIIITTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG 340 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 340 (483)
..+..||.||.....+. ....+..+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 24556666776543322 12345678899999999999998887542211 12345667777777
No 117
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.15 E-value=2.2e-05 Score=65.25 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHhh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 118
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=0.00026 Score=70.47 Aligned_cols=240 Identities=18% Similarity=0.116 Sum_probs=130.1
Q ss_pred chhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhc
Q 038919 147 GIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLK 226 (483)
Q Consensus 147 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 226 (483)
-|...+..+.+.+... ..++.|+|+-++|||||++.+....... .+++......... ..+ .+.+
T Consensus 21 ~~~~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~----~~l-~d~~----- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR----IEL-LDLL----- 84 (398)
T ss_pred hHHhhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch----hhH-HHHH-----
Confidence 3334455555554432 2299999999999999997777765544 3444322111111 011 1111
Q ss_pred ccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh------CCCcceEe
Q 038919 227 LADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKL------HRVEEVFK 300 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~------~~~~~~~~ 300 (483)
..+...-..++..++||.|.....|...+..+...++. +|++|+.+...... .+....+.
T Consensus 85 -------------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~ 150 (398)
T COG1373 85 -------------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred -------------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEE
Confidence 11111111267899999999998888877766654555 88888887654322 23456789
Q ss_pred cCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhCCCCHHHHHHHHHHhccCCCccHHHHHH
Q 038919 301 LEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFLFGRPVDEWTSTLERLKREPENEILDILQ 380 (483)
Q Consensus 301 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l~~~~~~~~~~~l~~l~~~~~~~v~~~l~ 380 (483)
+.||+..|-..+..... ... .... .-+-.-.+||.|-++..-...-. ........+. .++.+
T Consensus 151 l~PlSF~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~ 212 (398)
T COG1373 151 LYPLSFREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIE 212 (398)
T ss_pred ECCCCHHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHH
Confidence 99999999877653100 000 1111 22334557999988864322110 0011111110 01111
Q ss_pred Hhh-cCCcHHHHHHHhhhhc-CCCCCCHHHHHHHHH-hCCCChhhhHHHHhhCCceeE
Q 038919 381 ISF-DGLKEAEKEIFLDVAC-FFKGEKRDYVSKILD-SCGFEPVIGIGVLIEKSLLTI 435 (483)
Q Consensus 381 ~s~-~~L~~~~k~~l~~la~-f~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~sLi~~ 435 (483)
..- ... +..+.++..++- .+..++...+...+. .+.......++.|.+.-++..
T Consensus 213 ~~~~~~~-~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 213 RGKIENA-DLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HcCcccH-HHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 110 011 344555544444 445678888888883 444445666777877777764
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=98.14 E-value=0.00016 Score=68.70 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=72.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc-c-ceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE-F-DGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
...+.++|++|+|||++|+.+++..... + ...-|+. +. . .. +...+.+.. . ......+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~-------~-~~----l~~~~~g~~---~---~~~~~~l~ 119 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT-------R-DD----LVGQYIGHT---A---PKTKEVLK 119 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec-------H-HH----HHHHHhccc---h---HHHHHHHH
Confidence 3458899999999999999998865321 1 1111221 10 0 11 222221111 0 11111122
Q ss_pred HHHhcCceEEEEcCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEcCCHhHHh--------hCCCcceEecCCC
Q 038919 244 RRLRQKKVLLVIDDVAHV-----------EQLRRLAGKRDWFGPGSRIIITTRDEHLLK--------LHRVEEVFKLEAL 304 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~--------~~~~~~~~~l~~L 304 (483)
. ...-+|+||+++.. +....|...+.....+.+||+++....... .......+.++++
T Consensus 120 ~---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 120 K---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred H---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 2 12359999999642 344555554444345667777775432211 1123457899999
Q ss_pred ChHHHHHHHHHhhcc
Q 038919 305 TYDEAFQLFCLKAFE 319 (483)
Q Consensus 305 ~~~ea~~L~~~~~~~ 319 (483)
+.+|..+++...+..
T Consensus 197 t~~el~~I~~~~l~~ 211 (287)
T CHL00181 197 TPEELLQIAKIMLEE 211 (287)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887643
No 120
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00029 Score=67.50 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=61.4
Q ss_pred cCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 248 QKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 248 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
++.=++|+|+++.. ..-..|+..+..-.+++.+|++|.+. .+++. ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 34568999999754 45555655554445677777777654 33332 2344678999999999999987541 1
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHH
Q 038919 324 REEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
+ ...+..++..++|.|+....+
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 123567899999999866544
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=0.00016 Score=67.51 Aligned_cols=185 Identities=18% Similarity=0.131 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccce-----eEEEEecccccccCCcHHHHHHHHHHH
Q 038919 150 SRLEKLKFLMGAG-CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG-----SSFLADVKEKYDKEGSVISLQKQLISD 223 (483)
Q Consensus 150 ~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~ 223 (483)
..++.|.+++... ....+.+.|+|.+|+|||++++.+...+-..++. .++.. +....++. ..+...++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~-~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDE-RRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCCh-HHHHHHHHHH
Confidence 4566677777653 3446789999999999999999999865433321 12222 12233333 7777788877
Q ss_pred HhcccCCCccchhhhHHHHHHHHhc-CceEEEEcCCCCH-----H-------HHHHHhcCCCCCCCCcEEEEEcCCH---
Q 038919 224 LLKLADNSIRNVYDGINMIGRRLRQ-KKVLLVIDDVAHV-----E-------QLRRLAGKRDWFGPGSRIIITTRDE--- 287 (483)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~-----~-------~~~~l~~~~~~~~~~~~iliTtR~~--- 287 (483)
+..... ...............++. +.=+||+|++.+. . .++.+... -.=+-|.+-|++-
T Consensus 120 lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne----L~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 120 LGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE----LQIPIVGVGTREAYRA 194 (302)
T ss_pred hCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc----cCCCeEEeccHHHHHH
Confidence 654432 233444444555556654 3449999999653 1 12333222 2233455555432
Q ss_pred -----hHHhhCCCcceEecCCCChH-HHHHHHHHhhcc---CCCCCchHHHHHHHHHHHhCCChHHHH
Q 038919 288 -----HLLKLHRVEEVFKLEALTYD-EAFQLFCLKAFE---TQKPREEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 288 -----~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
+... ....+.+++...+ +...|+...... .....-...+++..|+..++|+.=-+.
T Consensus 195 l~~D~QLa~---RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 195 LRTDPQLAS---RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCHHHHh---ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 2222 2345667776654 445555433211 111122346788999999999875443
No 122
>PRK12377 putative replication protein; Provisional
Probab=98.09 E-value=8.9e-05 Score=68.44 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+.|+|++|+|||.||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876544444443
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.06 E-value=0.00015 Score=76.25 Aligned_cols=46 Identities=30% Similarity=0.391 Sum_probs=38.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999988777653 334679999999999999999998755
No 124
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=8.8e-05 Score=70.41 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=110.8
Q ss_pred HhhhchhHHHHHHHHHhhcCCCC-cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCND-VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
+.+.+|+.++..+..++...+.. +..+.|+|.+|.|||.+.+++.+....+ .+|+. +.+.... ..+...++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n-~~ecft~----~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLN-CVECFTY----AILLEKIL 77 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeee-hHHhccH----HHHHHHHH
Confidence 57899999999999999876554 4456999999999999999999976322 35554 3333332 56666676
Q ss_pred HHHhcccCCC------ccchhhhHHHHHH--HHh--cCceEEEEcCCCCHHHHH-----HHhcCCCCCCCCcEEEEEcCC
Q 038919 222 SDLLKLADNS------IRNVYDGINMIGR--RLR--QKKVLLVIDDVAHVEQLR-----RLAGKRDWFGPGSRIIITTRD 286 (483)
Q Consensus 222 ~~~~~~~~~~------~~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~-----~l~~~~~~~~~~~~iliTtR~ 286 (483)
.+........ ..+....+..+.+ ... ++.++|||||++...+.+ .++....-......+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 6653111111 1122233333333 222 358999999997654322 111110000122334444432
Q ss_pred ---HhHHhhCCCc--ceEecCCCChHHHHHHHHHhhccCCCC--CchHHHH-HHHHHHHhCCChHHHHHHHHH
Q 038919 287 ---EHLLKLHRVE--EVFKLEALTYDEAFQLFCLKAFETQKP--REEYVHL-SQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 287 ---~~~~~~~~~~--~~~~l~~L~~~ea~~L~~~~~~~~~~~--~~~~~~~-~~~i~~~~~G~PLal~~la~~ 351 (483)
.......+.. .++..+.-+.+|..+++.+.-.+.... -..+-.+ ..-+...|+ -+-.+..++..
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 1222212222 346678899999999986654321110 0122222 233455565 56666655554
No 125
>PRK08116 hypothetical protein; Validated
Probab=98.02 E-value=5.4e-05 Score=71.09 Aligned_cols=100 Identities=25% Similarity=0.305 Sum_probs=55.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
..+.|+|.+|+|||.||.++++.+......++|+. . ..++..+....... ...+ ...+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~~---~~~~----~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKSS---GKED----ENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhcc---cccc----HHHHHHHh
Confidence 45899999999999999999998876533344443 1 33333333322111 1111 11233334
Q ss_pred hcCceEEEEcCCC----CH---HHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 247 RQKKVLLVIDDVA----HV---EQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 247 ~~~~~LlVlDdv~----~~---~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
.+-. ||||||+. +. +.+-.++... ...+..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHH--HHCCCCEEEECCCC
Confidence 4444 89999993 11 2222232221 13566789988743
No 126
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.02 E-value=0.00015 Score=73.60 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=93.2
Q ss_pred HhhhchhHHHHHHHHH---hhc-----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHH
Q 038919 143 KELVGIESRLEKLKFL---MGA-----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVI 214 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~---L~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 214 (483)
.++.|.+...+.+... +.. +-..++-+.++|++|+|||.+|+.+++...-. ++..+....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~l-------- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGKL-------- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHHh--------
Confidence 4667776555555432 111 12235678999999999999999999976433 222211110
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH--------------HHHHHhcCCCCCCCCcEE
Q 038919 215 SLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE--------------QLRRLAGKRDWFGPGSRI 280 (483)
Q Consensus 215 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~~i 280 (483)
.....+. +.......+...-...+++|++|+++... .+..++..+.....+..|
T Consensus 296 ------~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 296 ------FGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ------cccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 0000000 01111122222234579999999996421 112222222222344556
Q ss_pred EEEcCCHhHH-----hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 281 IITTRDEHLL-----KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 281 liTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
|.||.+...+ .....+..+.++..+.++-.++|..+..+..... ........+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 6677655322 2224556788999999999999988775432111 00112455666666653
No 127
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=7.4e-05 Score=77.80 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=43.6
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCC---CCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGC---NDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|..+..++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34445789999999999999987532 2346899999999999999999998654
No 128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.00 E-value=8.5e-06 Score=75.25 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=56.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc-ccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccc-----hhhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRN-----VYDG 238 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~-----~~~~ 238 (483)
..+.++|.|++|+|||||++.+++.+.. +|+..+|+..+.+.. ... .++++.+...+.......... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~ev-~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EEV-TDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--ccH-HHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3478999999999999999999998754 577777876444321 122 566666532222211111111 1111
Q ss_pred HHHHHHH-HhcCceEEEEcCCCCH
Q 038919 239 INMIGRR-LRQKKVLLVIDDVAHV 261 (483)
Q Consensus 239 ~~~l~~~-l~~~~~LlVlDdv~~~ 261 (483)
....... -.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222222 2478999999999543
No 129
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=2e-05 Score=76.13 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=56.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc-ccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchh-----hh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVY-----DG 238 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~-----~~ 238 (483)
..+..+|+|++|+|||||++.+++.+.. +|+..+|+..+.+... . +..+++.+...+............ ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~--E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE--E-VTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh--H-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3467899999999999999999998765 6888888876554221 2 255555554322211111111111 11
Q ss_pred HHHHHHH-HhcCceEEEEcCCCCH
Q 038919 239 INMIGRR-LRQKKVLLVIDDVAHV 261 (483)
Q Consensus 239 ~~~l~~~-l~~~~~LlVlDdv~~~ 261 (483)
++..... ..+++++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111221 2579999999999543
No 130
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.97 E-value=0.0003 Score=76.14 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=94.0
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
.++.|.+..++.+.+++.. +-...+-+.|+|++|+|||+||+.+++.....| +..+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~------ 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPE------ 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHH------
Confidence 5688999999998876532 112346688999999999999999998764332 2221111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCC-CCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWF-GPG 277 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~~ 277 (483)
+. ....+ .........+.....+.+.+|+||+++.. .....|+..+... ..+
T Consensus 248 ----i~----~~~~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 248 ----IM----SKYYG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred ----Hh----ccccc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 00 00000 01111222233334567789999998532 1122333322211 223
Q ss_pred cEEEE-EcCCHhHH-hh----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 278 SRIII-TTRDEHLL-KL----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 278 ~~ili-TtR~~~~~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
..++| ||...... .. ......+.++..+.++-.+++..+........ ......+++.+.|..
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 33444 55433211 11 12345678888899988888886543222111 122566777777764
No 131
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.97 E-value=0.00064 Score=60.27 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=42.3
Q ss_pred hHHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 138 ESEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 138 ~~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|..+.++||-+..++.+.-.-.. ++.+-+.|.||||+||||-+..+++.+-
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 344557899999999988876653 3568899999999999999999998754
No 132
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00068 Score=66.48 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=89.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
....+.|||..|.|||.|+.++++......+...++..-. ......+...+.. .....+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s---------e~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS---------EDFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH---------HHHHHHHHHHHHh----------hhHHHHHH
Confidence 3678999999999999999999999887776443333110 2223333333221 11223444
Q ss_pred HHhcCceEEEEcCCCC-------HHHHHHHhcCCCCCCCCcEEEEEcCCH---------hHHhhCCCcceEecCCCChHH
Q 038919 245 RLRQKKVLLVIDDVAH-------VEQLRRLAGKRDWFGPGSRIIITTRDE---------HLLKLHRVEEVFKLEALTYDE 308 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~-------~~~~~~l~~~~~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~e 308 (483)
.. .-=++++||++- .+.+-.++..+. ..|..||+|++.. .+.......-++.+.+++.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 44 233889999942 222333333332 3445899998643 223334455689999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 309 AFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 309 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
...++.+.+...... ...++..-++.....+
T Consensus 249 r~aiL~kka~~~~~~--i~~ev~~~la~~~~~n 279 (408)
T COG0593 249 RLAILRKKAEDRGIE--IPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHhhcc
Confidence 999998866433321 1123444444444443
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.91 E-value=0.0004 Score=75.16 Aligned_cols=173 Identities=13% Similarity=0.176 Sum_probs=96.1
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
..+.|.+...+.|.+.+.. +-..++-+.++|++|+|||+||+++++.....| +....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~-------- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG-------- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh--------
Confidence 4577888777777665431 112245688999999999999999999765432 22111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--------------HHHHHHhcCCCCC--C
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--------------EQLRRLAGKRDWF--G 275 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~ 275 (483)
.. ++....+. ........+...-...+.+|+||+++.. ..+..++..+... .
T Consensus 521 --~~----l~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 --PE----ILSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred --HH----HhhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 11 11111110 1111122223333467899999998532 1233344333211 2
Q ss_pred CCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 276 PGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.+..||.||..+..+.. ...+..+.++..+.++-.++|..+..+...... .....+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 34556667765543221 234567889999999999999766533322111 11455667777654
No 134
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00069 Score=65.84 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=88.4
Q ss_pred Hhhhc-hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVG-IESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vG-R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..++| -+...+.+...+..+ .-.....++|+.|+|||++|..+++.+-..-+...- ..+. ......+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---------~cg~-C~~c~~~~ 73 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---------PCGT-CTNCKRID 73 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---------CCCc-CHHHHHHh
Confidence 35677 666777788877643 235678999999999999999999875321100000 0000 00000000
Q ss_pred HHHhc----c-cCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-
Q 038919 222 SDLLK----L-ADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH- 288 (483)
Q Consensus 222 ~~~~~----~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~- 288 (483)
..... . ........++..+. .+.+ .+.+=++|+|+++. .+....|+..+..-.+++.+|++|.++.
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l-~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYL-KEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHH-HHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00000 0 00000111222221 1221 23445799999964 3455666666655467777777776543
Q ss_pred HHhh-CCCcceEecCCCChHHHHHHHHHh
Q 038919 289 LLKL-HRVEEVFKLEALTYDEAFQLFCLK 316 (483)
Q Consensus 289 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 316 (483)
+.+. ......+++.+++.++..+.+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2222 234567999999999998888654
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.87 E-value=6.2e-05 Score=63.05 Aligned_cols=28 Identities=39% Similarity=0.347 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
+.+.|+|++|+||||++..++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999999876654
No 136
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.003 Score=60.59 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=61.2
Q ss_pred cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 248 QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 248 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
++.=++|+|+++. ......|+..+..-.+++.+|++|.++ .+++. ......+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 3445889999974 455666666555446677777766654 33333 33456789999999999999876421
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHH
Q 038919 324 REEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
. ....++..++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999876554
No 137
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00072 Score=66.87 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=76.4
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
.....+.+.|++|+|||+||.+++. .+.|+.+-.+. .. +-.++ .+ ............
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-pe---~miG~-sE----------------saKc~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-PE---DMIGL-SE----------------SAKCAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-hH---HccCc-cH----------------HHHHHHHHHHHH
Confidence 4466788999999999999999987 56777655443 00 00111 00 000111112223
Q ss_pred HHHhcCceEEEEcCCCCHH---------------HHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCC----CcceEecCCC
Q 038919 244 RRLRQKKVLLVIDDVAHVE---------------QLRRLAGKRDWFGPGSRIIITTRDEHLLKLHR----VEEVFKLEAL 304 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~----~~~~~~l~~L 304 (483)
...+..=-+||+||++..- .+.-++...+..+...-|+-||....++..++ ....+.|+.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 3334555699999996542 22233333332233334555777788887765 3357899999
Q ss_pred Ch-HHHHHHHHHh
Q 038919 305 TY-DEAFQLFCLK 316 (483)
Q Consensus 305 ~~-~ea~~L~~~~ 316 (483)
+. ++..+.++..
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 88 6777777654
No 138
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.84 E-value=0.00073 Score=64.83 Aligned_cols=151 Identities=23% Similarity=0.215 Sum_probs=79.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccc-ccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKY-DKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
.+..++|||++|+|||.+|+.++..+...| +..+..+.. ...+-.....+++. ....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F------------------~~A~ 204 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRY------------------REAA 204 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHH------------------HHHH
Confidence 478899999999999999999999876542 222221111 11111112222211 1111
Q ss_pred HHH--hcCceEEEEcCCCCH------------HHH--HHHhcCCC--------------CCCCCcEEEEEcCCHhHHhh-
Q 038919 244 RRL--RQKKVLLVIDDVAHV------------EQL--RRLAGKRD--------------WFGPGSRIIITTRDEHLLKL- 292 (483)
Q Consensus 244 ~~l--~~~~~LlVlDdv~~~------------~~~--~~l~~~~~--------------~~~~~~~iliTtR~~~~~~~- 292 (483)
+.. ++++++|+||+++.. .++ ..|+..+. ....+..||+||.++..+..
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 111 468999999998521 111 23332111 12456778888876643221
Q ss_pred ----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChH
Q 038919 293 ----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPL 343 (483)
Q Consensus 293 ----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 343 (483)
...+..| ..-+.++-.++++.+..... .+ .....++++...|-|+
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~-l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG-VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHhccCC-CC---HHHHHHHHHcCCCCCc
Confidence 1122233 34556666777766553322 22 2445667777777664
No 139
>PRK10536 hypothetical protein; Provisional
Probab=97.83 E-value=9.1e-05 Score=67.81 Aligned_cols=139 Identities=10% Similarity=0.115 Sum_probs=75.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH-h-hcccceeEEEEecccccc----cCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL-I-SHEFDGSSFLADVKEKYD----KEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l 216 (483)
..+.+|......+..++.. ...+.++|++|+|||+||.+++.. + ...|...+.....-...+ -++...+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4577888888888887763 249999999999999999998874 3 344443333221111111 11111111
Q ss_pred HHHHHHHHhcccCC--CccchhhhHH--------HHHHHHhcCc---eEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEE
Q 038919 217 QKQLISDLLKLADN--SIRNVYDGIN--------MIGRRLRQKK---VLLVIDDVA--HVEQLRRLAGKRDWFGPGSRII 281 (483)
Q Consensus 217 ~~~ll~~~~~~~~~--~~~~~~~~~~--------~l~~~l~~~~---~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~il 281 (483)
..-.+..+...-.. .......... .-..++++++ .+||+|.+. +..++..++..+ +.++++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEE
Confidence 11111111100000 0000000000 0123456654 499999996 457777777554 7899999
Q ss_pred EEcCCHh
Q 038919 282 ITTRDEH 288 (483)
Q Consensus 282 iTtR~~~ 288 (483)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9877543
No 140
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00029 Score=65.49 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=48.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh----cccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS----HEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
-+++.++||||.|||+|++++++++. +.|..+..+. ... ..++.+ .... .........+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----ins-----hsLFSK----WFsE---SgKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----INS-----HSLFSK----WFSE---SGKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Eeh-----hHHHHH----HHhh---hhhHHHHHHHH
Confidence 47899999999999999999999653 4455554443 111 222222 2221 12233444455
Q ss_pred HHHHHhcCc--eEEEEcCCCCH
Q 038919 242 IGRRLRQKK--VLLVIDDVAHV 261 (483)
Q Consensus 242 l~~~l~~~~--~LlVlDdv~~~ 261 (483)
+.+.+.++. +++.+|.|++.
T Consensus 241 I~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHH
Confidence 666666554 56778999654
No 141
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.003 Score=60.72 Aligned_cols=174 Identities=12% Similarity=0.082 Sum_probs=94.3
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHH------hc
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDL------LK 226 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~------~~ 226 (483)
+.+.+.+..+ .-.....++|+.|+||+++|..++..+--.-+.. ...-+. ....+.+.... ..
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~-C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQ-CHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCC-CHHHHHHhcCCCCCEEEEc
Confidence 4455555532 1246788999999999999999998653211000 000000 00001110000 00
Q ss_pred ccCCCccchhhhHHHHHHHHh-----cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcc
Q 038919 227 LADNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEE 297 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~ 297 (483)
......-.+++. ..+.+.+. ++.=++|+|+++. ......|+..+..-.+++.+|++|.++ .+++. .....
T Consensus 81 p~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 000000111111 11222222 4455888999974 355666666665546677777777665 33333 23456
Q ss_pred eEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 298 VFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
.+.+.+++.++..+.+..... . . ...+..++..++|.|+-.
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~---~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS---A-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc---c-C---hHHHHHHHHHcCCCHHHH
Confidence 799999999999999987641 1 1 122556788899999633
No 142
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.002 Score=62.52 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=60.7
Q ss_pred cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 248 QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 248 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
+++=++|+|+++. .+.-..|+..+..-.+++.+|++|.++. +++. ....+.+.+.+++.+++.+.+..... .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---M- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC---C-
Confidence 4556899999974 4556666665554466777777766543 4433 33445789999999999998865421 1
Q ss_pred CchHHHHHHHHHHHhCCChHHH
Q 038919 324 REEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PLal 345 (483)
+ .+.+..++..++|.|...
T Consensus 183 ~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHH
Confidence 1 133667889999999643
No 143
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.79 E-value=9e-05 Score=72.11 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=58.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchh-hh----
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVY-DG---- 238 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~-~~---- 238 (483)
..+.++|+|++|+|||||+..+++.+... |+..+|+..+.+.. .. +.++++.++..+............ ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~--~E-VtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP--EE-VTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC--cc-HHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 35789999999999999999999987665 88788877543321 12 266666664443322221111111 11
Q ss_pred HHHHHHH-HhcCceEEEEcCCCCH
Q 038919 239 INMIGRR-LRQKKVLLVIDDVAHV 261 (483)
Q Consensus 239 ~~~l~~~-l~~~~~LlVlDdv~~~ 261 (483)
.+..... -.+++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111122 2479999999999654
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.75 E-value=0.00075 Score=63.40 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
++.+..++..+ +.+.|.|++|+|||+||+.+++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34444444432 4577999999999999999998553
No 145
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.75 E-value=0.0033 Score=61.17 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCChhHHHHHHHHHhhcc--cceeEEEEecccccccCCcHHHHHHHHHHHH
Q 038919 148 IESRLEKLKFLMGAGC-NDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGSSFLADVKEKYDKEGSVISLQKQLISDL 224 (483)
Q Consensus 148 R~~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 224 (483)
|+...+.|.+.+...+ ..+.+|+|.|.=|+|||++...+.+.+... ....+...+.........+...++..+...+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 3455667777777543 567899999999999999999999988776 2334444455555444445456665555443
No 146
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00068 Score=68.22 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=95.3
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.++=|.+..+.+|.+++.. +-..++=|.+||++|+|||.||.+++.++.-.| +. + +.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~-i---sA---- 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS-I---SA---- 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee-e---cc----
Confidence 6788999999998886643 112356699999999999999999999765432 11 1 00
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCC------
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDW------ 273 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~------ 273 (483)
.++.+.+.+ .+.....+.+.+.....|+++++|+++.. ..+..|+..+..
T Consensus 257 -----peivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 257 -----PEIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred -----hhhhcccCc------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 011222111 12223333444455678999999999632 112233333221
Q ss_pred CCCCcEEEE-EcCCHhHHhh----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 274 FGPGSRIII-TTRDEHLLKL----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 274 ~~~~~~ili-TtR~~~~~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
.+.+..||- |+|...+-.. ...++.+.+.--+..+-.+++...+-+-....+ + ..++|++.+-|.
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-F--DFKQLAKLTPGF 395 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC-c--CHHHHHhcCCCc
Confidence 123333343 4443322211 234456778777777777777665543332221 1 145566666665
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.72 E-value=0.0013 Score=71.93 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=38.8
Q ss_pred HhhhchhHHHHHHHHHhhcC------CCC-cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAG------CND-VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|.+.-++.+...+... .+. ...+.++|++|+|||+||+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 56889999999888876531 111 247889999999999999999987643
No 148
>PRK08181 transposase; Validated
Probab=97.71 E-value=0.00021 Score=66.90 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
.-+.|+|++|+|||.||..+++........+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999998876554344444
No 149
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0056 Score=59.31 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred CceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCC
Q 038919 249 KKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPR 324 (483)
Q Consensus 249 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 324 (483)
+.=++|+|+++. .+....|+..+..-.+++.+|++|.++ .+++. ......+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 445888999974 466666766665546677666666554 44433 3344679999999999999997652 111
Q ss_pred chHHHHHHHHHHHhCCChHHHHHH
Q 038919 325 EEYVHLSQLVVNYAGGLPLALKVL 348 (483)
Q Consensus 325 ~~~~~~~~~i~~~~~G~PLal~~l 348 (483)
...+...++|.|+....+
T Consensus 208 ------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ------HHHHHHHcCCCHHHHHHH
Confidence 123567789999755433
No 150
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0006 Score=69.34 Aligned_cols=172 Identities=15% Similarity=0.222 Sum_probs=95.9
Q ss_pred hhhchhHHHHHHHHHhh-----------cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 144 ELVGIESRLEKLKFLMG-----------AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
++=|.++...+|++... .+-..++-|.++|+||+|||++|+++++.-.-.|-. + . +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls---v---k------g- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS---V---K------G- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee---c---c------C-
Confidence 34446665555654332 133456789999999999999999999976655421 1 0 1
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH-------------HHHHHhcCCCCCCCCcE
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE-------------QLRRLAGKRDWFGPGSR 279 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~ 279 (483)
. ++++...+.. .....+...+.-+-.+++|.||.++... .+..++..++-......
T Consensus 502 -p----EL~sk~vGeS------Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 502 -P----ELFSKYVGES------ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -H----HHHHHhcCch------HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1 2222222221 1111222233334567999999986432 24455555443333333
Q ss_pred EEE---EcCCHhH----HhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 280 III---TTRDEHL----LKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 280 ili---TtR~~~~----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
|+| |.|...+ +.....++.+.++.-+.+.-.++|+.++-+-...+. -...+|++.+.|.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 333 4443322 222235678889988888889999988854433322 12455666666654
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.0012 Score=71.38 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=38.4
Q ss_pred HhhhchhHHHHHHHHHhhcC------CCC-cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAG------CND-VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|-+..++.+.+.+... .+. ..++.++|++|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 67889998888888876531 112 34688999999999999999999773
No 152
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.68 E-value=0.00017 Score=66.13 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|.++|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 355556544444679999999999999999999987765555566664
No 153
>PRK09183 transposase/IS protein; Provisional
Probab=97.66 E-value=0.00022 Score=66.66 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+.|+|++|+|||+||..++......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 568899999999999999998875544
No 154
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.0018 Score=65.51 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=108.8
Q ss_pred HHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc----cc-e-eEEEEecccccccCCcHH
Q 038919 141 ILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE----FD-G-SSFLADVKEKYDKEGSVI 214 (483)
Q Consensus 141 ~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~-~-~~~~~~~~~~~~~~~~~~ 214 (483)
..+++||-+.....|...+..+. -......+|+-|+||||+|+-++..+--. .. + .|..+ ... ..... .
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I-~~g~~-~ 88 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEI-NEGSL-I 88 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhh-hcCCc-c
Confidence 34678999999999999988542 24567889999999999999999854211 11 0 01100 000 00000 0
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHHH-HhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCHh-HH
Q 038919 215 SLQKQLISDLLKLADNSIRNVYDGINMIGRR-LRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDEH-LL 290 (483)
Q Consensus 215 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~ 290 (483)
++.+ +-.......++..+..+.+.-. ..++.=+.|+|.|+. ...+..|+..+..-.++..+|+.|.+++ +.
T Consensus 89 DviE-----iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 89 DVIE-----IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cchh-----hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1000 0001111112221111111111 123455899999974 4678888887776566777777776653 22
Q ss_pred -hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 291 -KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 291 -~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
......+.|.+..++.++-...+...+...... ...+...-|.+..+|-.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCCh
Confidence 223445679999999999999988877544322 22345555666666643
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.65 E-value=0.0014 Score=71.93 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=40.0
Q ss_pred HhhhchhHHHHHHHHHhhcC------CCC-cEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAG------CND-VRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|.+..++.+...+... .+. ...+.++|++|+|||++|+.++..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 67899999999999877642 111 357889999999999999999987644
No 156
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.65 E-value=0.0057 Score=58.79 Aligned_cols=48 Identities=17% Similarity=0.053 Sum_probs=34.2
Q ss_pred eEecCCCChHHHHHHHHHhhccCCCCC-chHHHHHHHHHHHhCCChHHH
Q 038919 298 VFKLEALTYDEAFQLFCLKAFETQKPR-EEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 298 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 345 (483)
+++|++++.+|+..++....-.+-... ...+...+++.-.++|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764433222 233455666777779999755
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.63 E-value=0.0002 Score=63.73 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh--hcccceeEEEEecccccccCCcHHHH-HHHH---HH
Q 038919 149 ESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI--SHEFDGSSFLADVKEKYDKEGSVISL-QKQL---IS 222 (483)
Q Consensus 149 ~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~~l-~~~l---l~ 222 (483)
..+-....+.|. ...++.+.|++|+|||.||.+.+-+. ...|...++....-+.....+++..- -+++ +.
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 333444444444 23589999999999999998887543 34566666654333222222221111 1111 00
Q ss_pred H---HhcccCCCccchhhhHHH------HHHHHhc---CceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 223 D---LLKLADNSIRNVYDGINM------IGRRLRQ---KKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 223 ~---~~~~~~~~~~~~~~~~~~------l~~~l~~---~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
. .+.... ........... -..++++ ...+||+|++. +..+++.++... +.+|++|++--..
T Consensus 82 p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 82 PIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 0 000000 00111110000 0012334 35799999995 457888887664 7899999987744
No 158
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.63 E-value=0.00018 Score=69.45 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..+.++|++|+|||.||.++++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998876544455554
No 159
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.0026 Score=57.47 Aligned_cols=172 Identities=18% Similarity=0.238 Sum_probs=99.7
Q ss_pred HhhhchhHHHHH---HHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEK---LKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~---l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 215 (483)
++.||.+.-... +.+.|.. +.-.++-|..+|++|.|||.+|+++++.....| .....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka------------ 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA------------ 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech------------
Confidence 678888765443 4455554 223478899999999999999999998654322 11100
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--------------HHHHHHhcCCCCC--CCCcE
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--------------EQLRRLAGKRDWF--GPGSR 279 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~~~~ 279 (483)
.+++....+. ......+...+.-...+|++.+|.++.. +.+.+|+..+... +.|..
T Consensus 185 --t~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 185 --TELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1122111111 1122222333333467999999988532 3455666555422 45666
Q ss_pred EEEEcCCHhHHhhC---CCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 280 IIITTRDEHLLKLH---RVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 280 iliTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
.|-.|.++..+... .....++..--+.+|-..++...+-.-..+-+ .-.+.++..++|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 67667666554321 22345777777888989998888744333221 1155666777775
No 160
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00069 Score=69.65 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=89.6
Q ss_pred HhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
.+-+|.+..-+++.+.|.- ..-..++++++||||+|||+|++.+++.+...|-. ..+++..+...
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR----~sLGGvrDEAE------- 391 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR----ISLGGVRDEAE------- 391 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE----EecCccccHHH-------
Confidence 4568998888888887753 22346899999999999999999999988776522 11222222111
Q ss_pred HHHHHHhcccCCCccchh-hhHHHHHHHHhcCceEEEEcCCCCH------HHHHHHhcCCCC-----C--------CCCc
Q 038919 219 QLISDLLKLADNSIRNVY-DGINMIGRRLRQKKVLLVIDDVAHV------EQLRRLAGKRDW-----F--------GPGS 278 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~-----~--------~~~~ 278 (483)
+-+....-..... ..++.+++ ..-++-+++||.++.. +--.+++..++. | -.=|
T Consensus 392 -----IRGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 392 -----IRGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----hccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 1111111111111 11222222 2345668899998532 112222222210 0 0113
Q ss_pred E-EEEEcCCH-h--HHhhCCCcceEecCCCChHHHHHHHHHhhc
Q 038919 279 R-IIITTRDE-H--LLKLHRVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 279 ~-iliTtR~~-~--~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
. +.|+|-|. . ..+......++++.+.+.+|-.++-.+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3 34455442 2 123345667899999999999998887763
No 161
>PRK06526 transposase; Provisional
Probab=97.63 E-value=0.00013 Score=67.84 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+-+.|+|++|+|||+||..++......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 568999999999999999999876654
No 162
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00074 Score=67.97 Aligned_cols=128 Identities=17% Similarity=0.260 Sum_probs=79.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHH-HHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINM-IGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~ 244 (483)
+.=|.+||++|+|||-||+++++.-...| +. + .+ . +++....+. .+..+.. +++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V------KG--P----ELlNkYVGE-------SErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V------KG--P----ELLNKYVGE-------SERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e------cC--H----HHHHHHhhh-------HHHHHHHHHHH
Confidence 44588999999999999999999766654 21 1 11 1 233333222 1222222 333
Q ss_pred HHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEcCCHhH-----HhhCCCcceEecCCC
Q 038919 245 RLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWF--GPGSRIIITTRDEHL-----LKLHRVEEVFKLEAL 304 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~~~~iliTtR~~~~-----~~~~~~~~~~~l~~L 304 (483)
.-...|++|.||.++.. ..+..|+..+.-. -.|.-||-.|..+++ +.....+..+-|+.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 33468999999999543 2355565554422 235555655544433 333345667888989
Q ss_pred ChHHHHHHHHHhhc
Q 038919 305 TYDEAFQLFCLKAF 318 (483)
Q Consensus 305 ~~~ea~~L~~~~~~ 318 (483)
+.+|-.+++....-
T Consensus 680 n~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 680 NAEERVAILKTITK 693 (802)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988775
No 163
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.60 E-value=0.0019 Score=60.58 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=99.4
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccccccc-CCcHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDK-EGSVISLQKQ 219 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ 219 (483)
..++|-..+-..+..++.. -.+....+.|.||.|.|||+|......+ .+.+.-....+.+.+.... .-.+..+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 3688888888888888764 1123457899999999999999877766 4445555555545433222 1112333344
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHh------cCceEEEEcCCCCH------HHHHHHhcCCC-CCCCCcEEEEEcCC
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLR------QKKVLLVIDDVAHV------EQLRRLAGKRD-WFGPGSRIIITTRD 286 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~------~~~~~l~~~~~-~~~~~~~iliTtR~ 286 (483)
+..++... .....+..+....+...+. +.++++|+|.+|-- ..+-.++.... ...|-|-|-+|||-
T Consensus 103 l~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 103 LALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 33332221 1122233333444444443 34689999988532 11222322211 12456677789995
Q ss_pred H-------hHHhhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 287 E-------HLLKLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 287 ~-------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
. .|-.......++-+++++.++-.++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4 222223333456678899999999998876
No 164
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0016 Score=66.77 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=83.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.+.|.|.|+.|+|||+|++++++.+...-.+.+-+.++..... . .+..+++.+ ...+-..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~-~-~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG-S-SLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc-h-hHHHHHHHH------------------HHHHHHH
Confidence 4679999999999999999999988755444333333322111 1 112222221 1223445
Q ss_pred HhcCceEEEEcCCCCHH---------------HHHHHhc-CCCC-CCCCc--EEEEEcCCHhHH-----hhCCCcceEec
Q 038919 246 LRQKKVLLVIDDVAHVE---------------QLRRLAG-KRDW-FGPGS--RIIITTRDEHLL-----KLHRVEEVFKL 301 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~---------------~~~~l~~-~~~~-~~~~~--~iliTtR~~~~~-----~~~~~~~~~~l 301 (483)
+...|-+|||||++... -+..++. .... ...+. .+|.|.....-. ...-......|
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 66789999999995321 1111211 0000 02233 345555433221 11223346788
Q ss_pred CCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC-hHHHH
Q 038919 302 EALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL-PLALK 346 (483)
Q Consensus 302 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~ 346 (483)
+++...+-.++++....... .....+...-+..+|+|. |.-+.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred CCcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHH
Confidence 99998888887766543222 111222233366677665 33333
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00076 Score=71.06 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=74.0
Q ss_pred HhhhchhHHHHHHHHHhhc-------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEKLKFLMGA-------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 215 (483)
...+|-+.-+..+.+.+.. .+.....+...||.|+|||.||++++..+-..=.. ..-.+.++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~a-liR~DMSEy~-------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQA-LIRIDMSEYM-------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcc-ceeechHHHH--------
Confidence 6789999999999887653 22235678889999999999999999976533222 2222232221
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCce-EEEEcCCC--CHHHHHHHhcCCCC
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKV-LLVIDDVA--HVEQLRRLAGKRDW 273 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~~~~ 273 (483)
-+.-.+.+.+..+... ..++ --.+-+..+++|+ +|.||+++ +++.+.-|+..+..
T Consensus 562 -EkHsVSrLIGaPPGYV-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 -EKHSVSRLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHHHHhCCCCCCc-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1223344444332221 1111 2234556677776 88899996 66777777766653
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.58 E-value=0.00099 Score=72.40 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=40.0
Q ss_pred HhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 143 KELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
...+|.+...+.+.+++.. .....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578988888888775542 222346899999999999999999999876543
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00088 Score=68.64 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=87.2
Q ss_pred HhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQK 218 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 218 (483)
.+-+|++...+++.+.+.- ++.+.++++.+|++|+|||++|+.++..+...| |-..+++..+....
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF----fRfSvGG~tDvAeI------ 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF----FRFSVGGMTDVAEI------ 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce----EEEeccccccHHhh------
Confidence 4568998888888887643 344578999999999999999999999877664 22333333222111
Q ss_pred HHHHHHhcccCCCccch-hhhHHHHHHHHhcCceEEEEcCCCCH---------HHHHHHhc---------CCCCC-CCCc
Q 038919 219 QLISDLLKLADNSIRNV-YDGINMIGRRLRQKKVLLVIDDVAHV---------EQLRRLAG---------KRDWF-GPGS 278 (483)
Q Consensus 219 ~ll~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~l~~---------~~~~~-~~~~ 278 (483)
-+......... ...++.++. ..-.+-|+.||.|+.. ..+-.++. ...+. -.=|
T Consensus 481 ------kGHRRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 481 ------KGHRRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ------cccceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 11111111111 111222222 2234558888988533 11211111 11000 1125
Q ss_pred EEEE-EcCCH-hH--HhhCCCcceEecCCCChHHHHHHHHHhhc
Q 038919 279 RIII-TTRDE-HL--LKLHRVEEVFKLEALTYDEAFQLFCLKAF 318 (483)
Q Consensus 279 ~ili-TtR~~-~~--~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 318 (483)
+|++ .|-|. +. .+......+++|.+...+|-+.+-.+++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 5543 33221 11 12234557899999999999988877763
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.56 E-value=0.00097 Score=72.77 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=39.3
Q ss_pred HhhhchhHHHHHHHHHhhc-------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGA-------GCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|-+.-++.+.+.+.. .+....++.++|++|+|||.||+.+++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 6789999999998887642 1122457899999999999999999987643
No 169
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0021 Score=67.37 Aligned_cols=177 Identities=17% Similarity=0.260 Sum_probs=103.0
Q ss_pred HhhhchhHHHHHHH---HHhhc-------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLK---FLMGA-------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~---~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.++.|.++..++|. +.|.+ +..-++=+.|+|++|+|||-||++++-.-.= -|+. ++.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----PF~s-vSG------- 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS-VSG------- 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----ceee-ech-------
Confidence 67888886555554 45543 1122566899999999999999999974322 2222 110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-----------------HHHHHHhcCCCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-----------------EQLRRLAGKRDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~ 275 (483)
. ++..-+.+... ...-+.....-.+.|+++.+|+++.. ..+..++..++-+.
T Consensus 378 -S----EFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 -S----EFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -H----HHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1 11111111110 11111122222467899999988432 23556665555444
Q ss_pred CCc--EEEEEcCCHhHH-----hhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHH
Q 038919 276 PGS--RIIITTRDEHLL-----KLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 276 ~~~--~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 345 (483)
.+. .+|-+|...+++ .....++.+.++.-+...-.++|.-++...... .+..++++ ++..+-|++=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 333 333355544332 223456678899889999999999888554443 34456666 999999998554
No 170
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.55 E-value=0.0006 Score=61.14 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=65.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE-ecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA-DVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.++.|+|++|+||||++..++..+.......++.. +..+.. .... ..+..... ...+.......++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~---------~~~i~q~~-vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESK---------RSLINQRE-VGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCc---------cceeeecc-cCCCccCHHHHHHHH
Confidence 47899999999999999998887765444343332 111100 0000 00000000 011223345667788
Q ss_pred HhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHH
Q 038919 246 LRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHLL 290 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 290 (483)
++..+=++++|++.+.+.+...+... ..|..++.|+......
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88888899999998887766654432 2455677777765443
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.54 E-value=0.00086 Score=57.96 Aligned_cols=133 Identities=20% Similarity=0.176 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc--------------------cceeEEEEecccc
Q 038919 147 GIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE--------------------FDGSSFLADVKEK 206 (483)
Q Consensus 147 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 206 (483)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..+++.+-.. ++...++. ....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK-PDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE-TTTS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe-cccc
Confidence 4456677777777643 225678999999999999999999865322 11112221 0000
Q ss_pred cccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH-----hcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcE
Q 038919 207 YDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL-----RQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSR 279 (483)
Q Consensus 207 ~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~ 279 (483)
. ..-..++.. .+...+ .+..=++|+||++. .+....|+..+.....++.
T Consensus 79 ~-----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 79 K-----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp S-----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEE
T ss_pred c-----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEE
Confidence 0 001111111 222222 13455899999974 4555566555544467888
Q ss_pred EEEEcCCHhH-Hh-hCCCcceEecCCCC
Q 038919 280 IIITTRDEHL-LK-LHRVEEVFKLEALT 305 (483)
Q Consensus 280 iliTtR~~~~-~~-~~~~~~~~~l~~L~ 305 (483)
+|++|.+..- ++ .......+.+.+|+
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 8888887642 22 22344567777664
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=97.54 E-value=0.0088 Score=64.49 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=91.4
Q ss_pred EeC--CCCCChhHHHHHHHHHhh-cccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh
Q 038919 171 IWG--MGGLGKTTLARVVYDLIS-HEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR 247 (483)
Q Consensus 171 I~G--~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 247 (483)
+.| |.++||||+|..+++.+- +.+...+.-.|.+.. .+ ....++++.......... .
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~---rg--id~IR~iIk~~a~~~~~~---------------~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE---RG--INVIREKVKEFARTKPIG---------------G 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc---cc--HHHHHHHHHHHHhcCCcC---------------C
Confidence 347 889999999999999862 223333333333221 11 223333333322111100 1
Q ss_pred cCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCHh-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCC
Q 038919 248 QKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDEH-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKP 323 (483)
Q Consensus 248 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 323 (483)
.+.-++|||+++.. ++...|+..+......+++|+++.+.. +... ......+++.+++.++-...+...+......
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 23469999999754 455666655554456777777666543 2222 2345689999999999988887765432211
Q ss_pred CchHHHHHHHHHHHhCCChHHHH
Q 038919 324 REEYVHLSQLVVNYAGGLPLALK 346 (483)
Q Consensus 324 ~~~~~~~~~~i~~~~~G~PLal~ 346 (483)
...+....|+..++|.+....
T Consensus 709 --i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 --LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 224578889999999985443
No 173
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.54 E-value=0.0017 Score=67.33 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=38.2
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999999998876533 33567899999999999999998643
No 174
>PRK09354 recA recombinase A; Provisional
Probab=97.53 E-value=0.00036 Score=67.21 Aligned_cols=97 Identities=26% Similarity=0.335 Sum_probs=56.9
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH---HHHHhcccC
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL---ISDLLKLAD 229 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l---l~~~~~~~~ 229 (483)
.|..+|. .+=+..+++-|+|++|+||||||.+++......-..++|+. .....+ ....+.+ +..+. .
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId-~E~s~~-----~~~a~~lGvdld~ll---i 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID-AEHALD-----PVYAKKLGVDIDNLL---V 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-CccchH-----HHHHHHcCCCHHHeE---E
Confidence 4555565 44445689999999999999999999887766555556654 222111 1111221 11111 1
Q ss_pred CCccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 230 NSIRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
..+.+.++....+...++ +..-+||+|.+.
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 123344555555555554 356799999984
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0015 Score=70.00 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.6
Q ss_pred HhhhchhHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAG-------CNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|-+..++.|...+... ......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999888876531 11235789999999999999999998773
No 176
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0037 Score=60.44 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred ceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcCCHh-HHhh-CCCcceEecCCCChHHHHHHHHHhhccCCCCCc
Q 038919 250 KVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTRDEH-LLKL-HRVEEVFKLEALTYDEAFQLFCLKAFETQKPRE 325 (483)
Q Consensus 250 ~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 325 (483)
+-++|+|+++ +......++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-Cc
Confidence 3355668885 33444444443333245676777777654 3322 2234578999999999999986642 1 11
Q ss_pred hHHHHHHHHHHHhCCChHHH
Q 038919 326 EYVHLSQLVVNYAGGLPLAL 345 (483)
Q Consensus 326 ~~~~~~~~i~~~~~G~PLal 345 (483)
. . ..+..++|.|+..
T Consensus 189 ~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 P-E----ERLAFHSGAPLFD 203 (325)
T ss_pred H-H----HHHHHhCCChhhh
Confidence 1 1 1235688999643
No 177
>PRK06921 hypothetical protein; Provisional
Probab=97.52 E-value=0.00074 Score=63.36 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
...+.++|.+|+|||.||.++++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 34445544
No 178
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.52 E-value=0.00044 Score=63.12 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..|..+|..+-....++.|+|.+|+||||||.+++......-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455566544445689999999999999999999988765544455553
No 179
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.52 E-value=0.00047 Score=65.86 Aligned_cols=97 Identities=25% Similarity=0.335 Sum_probs=55.5
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH---HHHHhcccC
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL---ISDLLKLAD 229 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l---l~~~~~~~~ 229 (483)
.|..+|. .+=+..+++.|+|++|+||||||.+++......-..++|+. ..+..+ ....+.+ +..+. .
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId-~E~~~~-----~~~a~~lGvd~~~l~---v 112 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID-AEHALD-----PVYARKLGVDIDNLL---V 112 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc-ccchhH-----HHHHHHcCCCHHHeE---E
Confidence 3445554 34445689999999999999999998887765544455553 222111 1111111 11111 1
Q ss_pred CCccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 230 NSIRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
..+.+.++....+...++ +..-+||+|.+.
T Consensus 113 ~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 113 SQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred ecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 122344555555555554 456799999984
No 180
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.50 E-value=0.00024 Score=64.34 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=33.5
Q ss_pred HhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 158 LMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 158 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444344689999999999999999999987765555566665
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.00036 Score=69.16 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=39.6
Q ss_pred HHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 142 LKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 142 i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++++.+..++.+...|... +.+.++|++|+|||++|+.+++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467888899999998888743 46888999999999999999988753
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.002 Score=70.58 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=72.4
Q ss_pred HhhhchhHHHHHHHHHhhcC------CCC-cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG------CND-VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVIS 215 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 215 (483)
..++|-+.-++.+...+... .+. ...+.++|++|+|||+||+.+++.+-..-. .+...+.++.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~-~~~~~d~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED-AMIRLDMSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc-ceEEEEchhccccccH---
Confidence 67899999999998876521 111 346789999999999999999987643212 2222333322221111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCc-eEEEEcCCC--CHHHHHHHhcCCCCC-----------CCCcEEE
Q 038919 216 LQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKK-VLLVIDDVA--HVEQLRRLAGKRDWF-----------GPGSRII 281 (483)
Q Consensus 216 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~~~~il 281 (483)
..+.+... ......+ ...+.+.++.++ .+++||+++ +++....|+..+... ..++.+|
T Consensus 585 ------~~l~g~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 585 ------SKLIGSPP-GYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred ------HHhcCCCC-cccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 11122111 1111111 112344455554 589999996 445566665544321 1345566
Q ss_pred EEcCC
Q 038919 282 ITTRD 286 (483)
Q Consensus 282 iTtR~ 286 (483)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 77663
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.46 E-value=0.00065 Score=61.95 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
-.++|.|.+|+|||+|+..+.......|...+.+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36889999999999999999999999996655543
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.00067 Score=65.69 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccccee-EEEEecccccccCCcHHHHHHHHHHHHhcccCCCcc
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS-SFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIR 233 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 233 (483)
+.+.+..- +..+.+.|+|++|+|||||++.+++.+....+.. +++..+.+... -+.++...+...+.........
T Consensus 123 vID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~---EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPE---EVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCC---CHHHHHHHHhhhEEeecCCCCH
Confidence 45554431 2346779999999999999999999887654333 34443433322 2255555555433222111111
Q ss_pred chh-h---hHHHHHHHH--hcCceEEEEcCCCCH
Q 038919 234 NVY-D---GINMIGRRL--RQKKVLLVIDDVAHV 261 (483)
Q Consensus 234 ~~~-~---~~~~l~~~l--~~~~~LlVlDdv~~~ 261 (483)
... . ....+.+++ .+++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 110 1 111112222 379999999999543
No 185
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.45 E-value=0.00071 Score=58.30 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=26.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
++.|+|++|+|||+++..++......-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999988766444444443
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00098 Score=62.05 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...-+.++|.+|+|||.||.++++.+...-..+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 345689999999999999999999988432333333
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0014 Score=63.78 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=36.7
Q ss_pred hhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 145 LVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
++|-+.....+..+..........+.++|++|+||||+|..+++.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 466667777777776643333456999999999999999999997653
No 188
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.00021 Score=62.71 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..-+.|+|++|+|||.||..+++.....-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356999999999999999999987766444445543
No 189
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.44 E-value=0.0014 Score=60.19 Aligned_cols=41 Identities=29% Similarity=0.258 Sum_probs=30.6
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
.|.++|..+-....++.|+|++|+|||+||.+++.......
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~ 47 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence 34455554444467999999999999999999987765443
No 190
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.43 E-value=0.0011 Score=62.16 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
.++.+..++... ..++.|.|+.|+||||++..+...+...-...+.+.+..+..- .+. .... .
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~------------~q~~-v 130 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI------------NQVQ-V 130 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc------------eEEE-e
Confidence 444555555422 3589999999999999999988876542223333332221110 000 0000 0
Q ss_pred CccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 231 SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
....-......++..++..+-.|+++++.+.+....++..
T Consensus 131 ~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 131 NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 0111123456678888899999999999998876655544
No 191
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.42 E-value=0.00091 Score=58.77 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...+|.|.|++|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887766666653
No 192
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.41 E-value=0.0058 Score=64.90 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=92.6
Q ss_pred HhhhchhHHHHHHHHHhhc----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMGA----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
..+.|.+...+++.+.+.. +..-.+-+.|+|++|+|||++|+.++......| +..+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~-------- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGS-------- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehH--------
Confidence 5677777666666554321 001134489999999999999999988664432 221111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWF-- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 274 (483)
.+.. ...+. ........+.......+++|+||+++.. ..+..++..+..+
T Consensus 220 --~~~~----~~~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 220 --DFVE----MFVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred --HhHH----hhhcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 1110 00010 1111122233333467899999999654 1233443333322
Q ss_pred CCCcEEEEEcCCHhHHhh-----CCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCC
Q 038919 275 GPGSRIIITTRDEHLLKL-----HRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGL 341 (483)
Q Consensus 275 ~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 341 (483)
..+..+|.||..++.+.. ...+..+.++..+.++-.+++..+........+. ....+++.+.|.
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~---d~~~la~~t~G~ 356 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGF 356 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC---CHHHHHhhCCCC
Confidence 234455557765543221 2345678899999988889988877543322111 123455556553
No 193
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.40 E-value=0.0014 Score=60.45 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|.+.|..+-....++.|+|.+|+|||+|+.+++......-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 345555544445689999999999999999999776444434455554
No 194
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.40 E-value=0.00096 Score=62.08 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEK 206 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 206 (483)
..+.++|.|.+|+|||+|+..+++....+|...+++..+.+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 347899999999999999999999998788777777655544
No 195
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.39 E-value=0.0079 Score=61.86 Aligned_cols=198 Identities=11% Similarity=0.092 Sum_probs=119.6
Q ss_pred HhhhchhHHHHHHHHHhhc--CC-CCcEEEEEeCCCCCChhHHHHHHHHHhhc-----ccceeEEEE-ecccccccCCcH
Q 038919 143 KELVGIESRLEKLKFLMGA--GC-NDVRMIGIWGMGGLGKTTLARVVYDLISH-----EFDGSSFLA-DVKEKYDKEGSV 213 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~~~~~-~~~~~~~~~~~~ 213 (483)
..+-+|+.+..+|...+.. .. .....+-|.|.+|+|||..+..+.+.+.. .-+...|+. |.-.. .. .
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l---~~-~ 471 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL---AS-P 471 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee---cC-H
Confidence 4688999999999987754 22 33568999999999999999999986541 122222221 11111 12 2
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh-----cCceEEEEcCCCCH-----HHHHHHhcCCCCCCCCcEEEEE
Q 038919 214 ISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAHV-----EQLRRLAGKRDWFGPGSRIIIT 283 (483)
Q Consensus 214 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iliT 283 (483)
.++...+...+.+. ........+.+..++. .+++++++|+++.. +.+..|+.... .++++++|.
T Consensus 472 ~~~Y~~I~~~lsg~----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi 545 (767)
T KOG1514|consen 472 REIYEKIWEALSGE----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHhcccC----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEE
Confidence 66666666665433 2334445555555554 46789999999643 45555554432 467776653
Q ss_pred cC-CH-----h-----HHhhCCCcceEecCCCChHHHHHHHHHhhccCCCC-CchHHHHHHHHHHHhCCChHHHHHHHHH
Q 038919 284 TR-DE-----H-----LLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKP-REEYVHLSQLVVNYAGGLPLALKVLGSF 351 (483)
Q Consensus 284 tR-~~-----~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~la~~ 351 (483)
+= +. . +...+ ..+.+.+.|.+..+-.+++..++.+...- ....+=+++.|+...|..-.|+...-+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred EecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 32 11 1 11111 23457889999999999998877554222 2233345566777777766666655443
No 196
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00058 Score=71.89 Aligned_cols=152 Identities=15% Similarity=0.193 Sum_probs=90.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cce-----eEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDG-----SSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-----~~~~~~~~~~~~~~~~~~~l 216 (483)
++.+||+.|++++.+.|.....+. -.++|.+|+|||+++.-++.++... .|. .++-.++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------------
Confidence 789999999999999998643322 3578999999999999999987543 111 11111111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHh-cCceEEEEcCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEc
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLR-QKKVLLVIDDVAHV-----------EQLRRLAGKRDWFGPGSRIIITT 284 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTt 284 (483)
. +........+.++.+..+.+.+. ..+++|++|.+... +.-.-+.+.+.. +.--.|-.||
T Consensus 236 ------~-LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 236 ------S-LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred ------H-HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 1 11112223445555555555554 44899999998422 222333333321 2222344566
Q ss_pred CCHhH--H----hhCCCcceEecCCCChHHHHHHHHHh
Q 038919 285 RDEHL--L----KLHRVEEVFKLEALTYDEAFQLFCLK 316 (483)
Q Consensus 285 R~~~~--~----~~~~~~~~~~l~~L~~~ea~~L~~~~ 316 (483)
-++.- . ......+.+.|...+.+++..+++..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 54321 1 11124567889999999999998644
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00019 Score=69.16 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=41.9
Q ss_pred HhhhchhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAG----CNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.+++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999888652 224688999999999999999999987754
No 198
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.37 E-value=0.00069 Score=57.72 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=61.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHH--hcccCC---Cccch------
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDL--LKLADN---SIRNV------ 235 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--~~~~~~---~~~~~------ 235 (483)
..|-|++..|.||||+|...+-+...+-..+.++.-+... ...+- ...++.+ ..+ ...... ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE-~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGE-LKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCH-HHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999999988776654445554433321 11122 2222222 000 000000 00111
Q ss_pred -hhhHHHHHHHHhc-CceEEEEcCCC--------CHHHHHHHhcCCCCCCCCcEEEEEcCCHh
Q 038919 236 -YDGINMIGRRLRQ-KKVLLVIDDVA--------HVEQLRRLAGKRDWFGPGSRIIITTRDEH 288 (483)
Q Consensus 236 -~~~~~~l~~~l~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~~~~iliTtR~~~ 288 (483)
.......++.+.. .-=|||||++. +.+.+-.++... .++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCCC
Confidence 1122233344443 44599999983 334444454432 56789999999753
No 199
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.37 E-value=0.0008 Score=64.38 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=55.3
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHH---HHHHhcccC
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQL---ISDLLKLAD 229 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l---l~~~~~~~~ 229 (483)
.|..+|. .+=+..+++-|+|++|+||||||.+++......-..++|+. ..+..+ ....+.+ +..+. -
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId-~E~~~~-----~~~a~~lGvd~~~l~---v 112 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID-AEHALD-----PVYAKKLGVDLDNLL---I 112 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC-ccccHH-----HHHHHHcCCCHHHhe---e
Confidence 3445554 33344689999999999999999999887665545555554 222111 1111111 11111 1
Q ss_pred CCccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 230 NSIRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
..+.+.++....+...++ +..-+||+|.+.
T Consensus 113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 122344555555555544 456799999873
No 200
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.37 E-value=0.0041 Score=67.24 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=41.1
Q ss_pred HhhhchhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGA----GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.+|.+...+.+.+++.. ......++.++|++|+||||+++.++..+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999887763 12235689999999999999999999876544
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.36 E-value=0.0017 Score=62.19 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.+-+.|+|..|+|||.||.++++.+...-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456899999999999999999998875544444443
No 202
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.35 E-value=0.0021 Score=59.39 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..|.++|..+=....++.|.|++|+|||+||.+++......-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566555455689999999999999999998876544445556654
No 203
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.34 E-value=0.0018 Score=66.39 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=40.7
Q ss_pred HHHHhhhchhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 140 EILKELVGIESRLEKLKFLMGA---GCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 140 ~~i~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.-+.+++--.+-++++..||.. +....+++.++||+|+||||.++.+++.+.
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345666667788899999875 233367999999999999999999998763
No 204
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.00063 Score=62.90 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=28.1
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|..+|..+-....++.|+|++|+|||+|+.+++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3445555444456899999999999999999998654
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00018 Score=58.91 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.0013 Score=58.57 Aligned_cols=110 Identities=20% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC--CccchhhhHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN--SIRNVYDGINMIGR 244 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~~~~~~~~~~~l~~ 244 (483)
.++.|+|++|.||||++..++.+...+...++++. .. .....+. .. +...+ +.... ......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~~~~~-~~----i~~~l-g~~~~~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDDRYGE-GK----VVSRI-GLSREAIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-ccccccC-Cc----EecCC-CCcccceEeCChHHHHHHHHh
Confidence 57889999999999999999998866544434332 10 0001111 11 11111 11000 11223333333433
Q ss_pred HHhcCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 245 RLRQKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
..++.-+||+|.+.- .+++..+...+. ..|..|++|.++.
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 234556999999953 344555544422 4688899999974
No 207
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.27 E-value=0.01 Score=57.69 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=37.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..++|+...+..+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45889998888888876653333456899999999999999988753
No 208
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.003 Score=62.75 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=79.5
Q ss_pred HhhhchhH---HHHHHHHHhhcCC------CC-cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIES---RLEKLKFLMGAGC------ND-VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~---~l~~l~~~L~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+.-|.++ |++++.+.|.... ++ ++=|.++|++|.|||-||++++-...- -+|+...++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~sGSEF------ 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYASGSEF------ 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEeccccch------
Confidence 45667765 5666666776421 11 556899999999999999999874322 2333211110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCCCCCcE
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWFGPGSR 279 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~~~~ 279 (483)
.+++ .+. ......+.....-.+-|++|.+|.++.. ..+..++..++-+.++.-
T Consensus 374 -dEm~-------VGv------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 374 -DEMF-------VGV------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred -hhhh-------hcc------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 1100 000 1111112223333467999999998533 335666666655554433
Q ss_pred EEE--EcCCHhHHh-----hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 280 III--TTRDEHLLK-----LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 280 ili--TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
||| .|.-++.+. ....+..+.|+.-+-.--.++|..+.
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 333 343332221 12234456666655555555555554
No 209
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00033 Score=58.52 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc-ccee-EEEEecc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE-FDGS-SFLADVK 204 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~-~~~~~~~ 204 (483)
--++|+|++|+||||++..+++.++.. |..+ ++...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 458999999999999999999988776 6544 3333343
No 210
>PRK06696 uridine kinase; Validated
Probab=97.25 E-value=0.00074 Score=61.84 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 148 IESRLEKLKFLMGA-GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 148 R~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
|...+++|.+.+.. ..+.+.+|+|.|.+|+||||||..+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56677777776643 34467899999999999999999999987644
No 211
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0087 Score=58.66 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=80.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
.|=..++||||.|||++..++++.+.- .++-..+...... .+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~y----dIydLeLt~v~~n----~d-Lr~LL~~---------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNY----DIYDLELTEVKLD----SD-LRHLLLA---------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCC----ceEEeeeccccCc----HH-HHHHHHh----------------------
Confidence 355889999999999999999996542 2443333222211 11 2222222
Q ss_pred HhcCceEEEEcCCCCHH--------------------HHHHHhcCC---CCCCCCcEE-EEEcCCHhH-----HhhCCCc
Q 038919 246 LRQKKVLLVIDDVAHVE--------------------QLRRLAGKR---DWFGPGSRI-IITTRDEHL-----LKLHRVE 296 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~--------------------~~~~l~~~~---~~~~~~~~i-liTtR~~~~-----~~~~~~~ 296 (483)
...+-+||+.|++..- .+.-|+..+ ...+.+-|| ++||-..+- +.....+
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 1334577777774220 122233222 222323455 457764432 2222233
Q ss_pred ceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 297 EVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 297 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
-.+.+.-=+.+.-..|+........ +. .++.+|.+...+.-+.=.+++..|
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 4567788888888888888775433 22 345666665566554444555444
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0041 Score=55.67 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=41.8
Q ss_pred HhhhchhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccce
Q 038919 143 KELVGIESRLEKLKFLMGA--GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG 196 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 196 (483)
..++|.+...+.|.+-... ..-...-|.+||.-|+|||+|++++.+.+......
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 6799999998888763321 11224568999999999999999999998877654
No 213
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.22 E-value=0.00083 Score=62.66 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.++|..+-....+.-|+|++|+|||+|+.+++-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 4555665333335689999999999999999887543
No 214
>PRK04328 hypothetical protein; Provisional
Probab=97.20 E-value=0.0018 Score=60.28 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|.++|..+=....++.|.|++|+|||+|+.+++......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 445555544344679999999999999999998876544444555554
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.20 E-value=0.0011 Score=59.03 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++++.++|+.|+||||.+..++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4789999999999999999999887766
No 216
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.013 Score=54.19 Aligned_cols=172 Identities=20% Similarity=0.182 Sum_probs=92.5
Q ss_pred HhhhchhHHHHHHHHHhh----------cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFLMG----------AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
....|.+.-.+.|.+..- .....-+-|.++|++|.|||-||++++.....- +|-+ + .
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----FFSv--S---S---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----FFSV--S---S---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc----eEEe--e---h----
Confidence 567888888888877532 122235679999999999999999999754432 2221 1 1
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh-cCceEEEEcCCCCH---------HHHHH----HhcC---CCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR-QKKVLLVIDDVAHV---------EQLRR----LAGK---RDWFG 275 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~---------~~~~~----l~~~---~~~~~ 275 (483)
.. +.+..++. .+.++..+.+..+ +++.+|.+|.++.. +..+. |+-. .....
T Consensus 200 -SD----LvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 200 -SD----LVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred -HH----HHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 12 22222222 2334444444443 78999999999643 22221 2111 11123
Q ss_pred CCcEEEEEcCCHhHHhhC---CCcceEecCCCChHHH-HHHHHHhhccCCCCCchHHHHHHHHHHHhCCCh
Q 038919 276 PGSRIIITTRDEHLLKLH---RVEEVFKLEALTYDEA-FQLFCLKAFETQKPREEYVHLSQLVVNYAGGLP 342 (483)
Q Consensus 276 ~~~~iliTtR~~~~~~~~---~~~~~~~l~~L~~~ea-~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 342 (483)
.|..||-.|.-+-++... .....+-+ ||....| ..+|.-+++... ....++-.+++..++.|..
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP--HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc--cccchhhHHHHHhhcCCCC
Confidence 455556566655443321 12223334 3444444 566766665432 2233344666777777753
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.18 E-value=0.062 Score=55.68 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=40.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4689999999888887765444456799999999999999999988543
No 218
>PRK07667 uridine kinase; Provisional
Probab=97.18 E-value=0.001 Score=59.45 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++.+.+.+....+...+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555555544556899999999999999999999987654
No 219
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.021 Score=51.37 Aligned_cols=146 Identities=18% Similarity=0.344 Sum_probs=83.3
Q ss_pred hhhc-hhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCC
Q 038919 144 ELVG-IESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEG 211 (483)
Q Consensus 144 ~~vG-R~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 211 (483)
.+|| .+.+++++.+.+.. +-..+.-+.++|++|.|||-||+++++.. .||+..+++
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsg------ 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG------ 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech------
Confidence 4554 46677777665432 11235668999999999999999999832 244444443
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH----HhcCceEEEEcCCCCH-------------H---HHHHHhcCC
Q 038919 212 SVISLQKQLISDLLKLADNSIRNVYDGINMIGRR----LRQKKVLLVIDDVAHV-------------E---QLRRLAGKR 271 (483)
Q Consensus 212 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~ 271 (483)
..+.+..+ +.. ...+++. -.+.+.+|..|.+++. + ..-.++..+
T Consensus 215 --selvqk~i----geg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 215 --SELVQKYI----GEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred --HHHHHHHh----hhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 23333222 111 1112221 1356889999988543 1 122333333
Q ss_pred CCC--CCCcEEEEEcCCHhH-----HhhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 272 DWF--GPGSRIIITTRDEHL-----LKLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 272 ~~~--~~~~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+ ..+.+||..|..-++ +.....++.++.++-+.+.-.+++.-+.
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 322 456778876654333 3333455678888888887777776554
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0087 Score=58.41 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++++++|+|++|+||||++..++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999877644
No 221
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.18 E-value=0.00047 Score=58.48 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..+|.|+|.+|+||||||+++.+++........++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999988766555553
No 222
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.005 Score=55.37 Aligned_cols=150 Identities=18% Similarity=0.308 Sum_probs=79.9
Q ss_pred hhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 144 ELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
+.=|.+-+.+++.+.... +-+.++-|.++|++|+|||.||+++++.....| +..++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvg-------- 222 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVG-------- 222 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeecc--------
Confidence 455666666666654422 224467799999999999999999999765544 22111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCHH----------------HHHHHhcCCCCC--
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVE----------------QLRRLAGKRDWF-- 274 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 274 (483)
. ++....++.+..... ..++-.-.+.+.+|.+|.++... .+-.++.....+
T Consensus 223 -s----efvqkylgegprmvr------dvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 223 -S----EFVQKYLGEGPRMVR------DVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred -H----HHHHHHhccCcHHHH------HHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 1 122233333221111 11222224678899999885431 122333333333
Q ss_pred CCCcEEEEEcCC-----HhHHhhCCCcceEecCCCChHHHHHHHHHhh
Q 038919 275 GPGSRIIITTRD-----EHLLKLHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 275 ~~~~~iliTtR~-----~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
+.+.+||..|.. +.++.....++.++.+--+..+-.-.|....
T Consensus 292 ~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 292 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 346677775542 2223223344556666445555555554443
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.14 E-value=0.00034 Score=58.79 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=32.0
Q ss_pred hchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 146 VGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 146 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5666777777776654223345689999999999999998887533
No 224
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.12 E-value=0.0012 Score=64.44 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=63.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE-ecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA-DVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...+.|+|++|+||||+...+...+.......++.. +..+. .... ...+...... ..+.......++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---------~~~~-~~~~i~q~ev-g~~~~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---------VHRN-KRSLINQREV-GLDTLSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---------hccC-ccceEEcccc-CCCCcCHHHHHHH
Confidence 368999999999999999999887765444444432 11110 0000 0000000010 1112335566788
Q ss_pred HHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 245 RLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
.++..+=.|++|.+.+.+.....+... ..|..++.|....
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 889999999999999887766544432 3455566666543
No 225
>PHA00729 NTP-binding motif containing protein
Probab=97.10 E-value=0.0039 Score=56.25 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+...+.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999764
No 226
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.02 Score=55.29 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=37.5
Q ss_pred cceEecCCCChHHHHHHHHHhhccCCCCCc-hHHHHHHHHHHHhCCChHHHHHHHHHh
Q 038919 296 EEVFKLEALTYDEAFQLFCLKAFETQKPRE-EYVHLSQLVVNYAGGLPLALKVLGSFL 352 (483)
Q Consensus 296 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~la~~l 352 (483)
..++++++.+.+|+.++........-...+ ..++.-+++.-..+|||--++-++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 346889999999999988655422111100 013456778888899997777666654
No 227
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.10 E-value=0.0045 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999997753
No 228
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.10 E-value=0.003 Score=62.12 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.++.+.|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555543334579999999999999999999988766544445553
No 229
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.08 E-value=0.012 Score=57.12 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=34.3
Q ss_pred hhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 145 LVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+||....++++.+.+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777776665433334568999999999999999887643
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0056 Score=53.48 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..+++|.|+.|.|||||.+.++..... ..+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 468999999999999999999876543 3444444
No 231
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.056 Score=56.45 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=65.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH-HHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMI-GRR 245 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l-~~~ 245 (483)
.=|.+||++|.|||-||++++....-.| +. + .++ + ++.-..+.. ++-+..+ .+.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V------KGP--E----LLNMYVGqS-------E~NVR~VFerA 760 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V------KGP--E----LLNMYVGQS-------EENVREVFERA 760 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e------cCH--H----HHHHHhcch-------HHHHHHHHHHh
Confidence 3488999999999999999998654332 21 1 222 2 233322221 2222223 333
Q ss_pred HhcCceEEEEcCCCCH---------------HHHHHHhcCCCC----CCCCcEEEEEcCCHhH-----HhhCCCcceEec
Q 038919 246 LRQKKVLLVIDDVAHV---------------EQLRRLAGKRDW----FGPGSRIIITTRDEHL-----LKLHRVEEVFKL 301 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~---------------~~~~~l~~~~~~----~~~~~~iliTtR~~~~-----~~~~~~~~~~~l 301 (483)
-..+||+|.||.+++. ..+..++..++. ...+.-||-.|..+++ +.....+..+.|
T Consensus 761 R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyv 840 (953)
T KOG0736|consen 761 RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYV 840 (953)
T ss_pred hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEe
Confidence 3468999999999654 123333333322 2234445544443333 233345566778
Q ss_pred CCCChHHHHH
Q 038919 302 EALTYDEAFQ 311 (483)
Q Consensus 302 ~~L~~~ea~~ 311 (483)
++=+.+++..
T Consensus 841 G~~~d~esk~ 850 (953)
T KOG0736|consen 841 GPNEDAESKL 850 (953)
T ss_pred cCCccHHHHH
Confidence 7766666543
No 232
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.04 E-value=0.0017 Score=56.34 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 038919 169 IGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+.|.|.+|+|||++|.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999875
No 233
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.04 E-value=0.0041 Score=55.61 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
+.+.+...+.. +.+++.|.|++|+|||+++..+...+...- ..+.+.... ......+.... +.
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT---------~~Aa~~L~~~~-~~--- 68 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPT---------NKAAKELREKT-GI--- 68 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESS---------HHHHHHHHHHH-TS---
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCc---------HHHHHHHHHhh-Cc---
Confidence 44455555553 236899999999999999999888776653 333333111 12222222221 10
Q ss_pred CccchhhhHHHHHHHH------hcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcCCHh
Q 038919 231 SIRNVYDGINMIGRRL------RQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTRDEH 288 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR~~~ 288 (483)
...++..........- ..+.-+||+|++. +...+..++.... ..++++|+.--..+
T Consensus 69 ~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 69 EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp -EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred chhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 0111100000000000 1234599999995 4456777666544 35778887765443
No 234
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.03 E-value=0.0038 Score=52.78 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
..+++|.|+.|.|||||++.++..... ..+.+++...... ..+.+ ...-....-.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i----~~~~~----------------lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKI----GYFEQ----------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEE----EEEcc----------------CCHHHHHHHHHHHH
Confidence 468999999999999999999875443 3444544321000 00000 11111222234445
Q ss_pred HhcCceEEEEcCCC---CH---HHHHHHhcCCCCCCCCcEEEEEcCCHhHHh
Q 038919 246 LRQKKVLLVIDDVA---HV---EQLRRLAGKRDWFGPGSRIIITTRDEHLLK 291 (483)
Q Consensus 246 l~~~~~LlVlDdv~---~~---~~~~~l~~~~~~~~~~~~iliTtR~~~~~~ 291 (483)
+..++-++++|+.. |. ..+..++..+ +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHH
Confidence 56677799999873 33 3333333322 246888888765543
No 235
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0025 Score=59.63 Aligned_cols=98 Identities=26% Similarity=0.217 Sum_probs=59.3
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHH-HhcccCCCcc
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISD-LLKLADNSIR 233 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~-~~~~~~~~~~ 233 (483)
|..+|..+-...+++-|+|+.|+||||+|.+++-.....-...+|+..- ..+-.....++... +.......+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE------~~l~p~r~~~l~~~~~d~l~v~~~~ 122 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE------HALDPERAKQLGVDLLDNLLVSQPD 122 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC------CCCCHHHHHHHHHhhhcceeEecCC
Confidence 3444444444578999999999999999999888777666667777522 11224444555554 2222223334
Q ss_pred chhhhHHHHHHHH---hcCceEEEEcCC
Q 038919 234 NVYDGINMIGRRL---RQKKVLLVIDDV 258 (483)
Q Consensus 234 ~~~~~~~~l~~~l---~~~~~LlVlDdv 258 (483)
+.++....+.... ..+--|+|+|.+
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 4444444443333 333569999998
No 236
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.02 E-value=0.0026 Score=59.67 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 578999999999999999999987763
No 237
>PRK06762 hypothetical protein; Provisional
Probab=97.01 E-value=0.0053 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++.|+|++|+||||+|+.+++++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 238
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0055 Score=63.35 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=83.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHH-HH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINM-IG 243 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~ 243 (483)
..+.+.++|++|.|||.||+++++.....|-. ... . .++....+ .....+.. ..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~----v~~----------~----~l~sk~vG-------esek~ir~~F~ 329 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFIS----VKG----------S----ELLSKWVG-------ESEKNIRELFE 329 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE----eeC----------H----HHhccccc-------hHHHHHHHHHH
Confidence 35689999999999999999999955544321 100 0 11111111 11222222 23
Q ss_pred HHHhcCceEEEEcCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEcCCHhHHhh-----CCCcceEecCC
Q 038919 244 RRLRQKKVLLVIDDVAHV-------------EQLRRLAGKRDWF--GPGSRIIITTRDEHLLKL-----HRVEEVFKLEA 303 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~ 303 (483)
...+..++.|.+|+++.. ..+..++..+... ..+..||-+|-.+..... ...+..+.+++
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 333578999999999532 2333444333211 233445555554433221 13456789999
Q ss_pred CChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCC
Q 038919 304 LTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGG 340 (483)
Q Consensus 304 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 340 (483)
-+.++..+.|..+......+ -...-..+.+++.+.|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999999999888533322 0111224445555555
No 239
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.99 E-value=0.0052 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~ 187 (483)
..+++|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.97 E-value=0.0017 Score=57.65 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=26.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655544555553
No 241
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0064 Score=58.84 Aligned_cols=48 Identities=27% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.++.+.|..+--...++.|-|.||||||||..+++.++.... .+.|+.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 345555554333357899999999999999999999998776 445543
No 242
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.0069 Score=55.69 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|.++|..+=.....+.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 445555433344679999999999999999998765544444556654
No 243
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.93 E-value=0.0071 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987543
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.93 E-value=0.0089 Score=59.81 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=35.3
Q ss_pred hhchhHHHHHHHHHhh-----cCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 145 LVGIESRLEKLKFLMG-----AGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+-=-..-+.++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3333456777888887 344457899999999999999999988754
No 245
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.93 E-value=0.0023 Score=61.99 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.++|..+=....+.-|+|++|+|||+|+.+++-..
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 3455565443446788899999999999999987543
No 246
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.93 E-value=0.0017 Score=63.02 Aligned_cols=74 Identities=32% Similarity=0.434 Sum_probs=59.8
Q ss_pred hhHHHHHHhCCCcEeecCCCCCCCCCCchHHHHHhhhcceEEEEecccccc--------chhhHHHHHHHHHHHhcCCce
Q 038919 4 SHLYTALNDKGIYVFRDDKQLEKGGSISPNLLKAIEESRISIIVLSRNYAS--------STWCLDELVKIVEYKNREDQI 75 (483)
Q Consensus 4 ~~L~~~L~~~gi~~f~d~~~~~~g~~~~~~l~~ai~~s~~~v~v~s~~y~~--------s~~cl~El~~~~~~~~~~~~v 75 (483)
+-+.--|.-.|++||||-+.+..|.. .+.+.+-|..++.+|.|+|||..+ -.|.-.|+.-+++|++. +
T Consensus 629 SLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~KN---I 704 (832)
T KOG3678|consen 629 SLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKN---I 704 (832)
T ss_pred HHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcCC---e
Confidence 44566678999999999988988864 478899999999999999998763 35667788888877543 9
Q ss_pred Eeeeec
Q 038919 76 FPIFYD 81 (483)
Q Consensus 76 ~Pvf~~ 81 (483)
||||-.
T Consensus 705 iPI~D~ 710 (832)
T KOG3678|consen 705 IPIFDT 710 (832)
T ss_pred eeeecc
Confidence 999854
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.015 Score=57.44 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998765
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.93 E-value=0.0028 Score=60.85 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..|.++|..+=....++-|+|++|+|||+|+.+++-.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 3455566644445678999999999999999988753
No 249
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0066 Score=53.20 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=25.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+++|.|++|+||||+|+.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999987643
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.92 E-value=0.0064 Score=57.68 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++++|+|++|+||||++..++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999877543
No 251
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.92 E-value=0.013 Score=61.09 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=38.9
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|....++++.+.+..-......|.|+|.+|+|||++|+.+++.-
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 578999999999888776533334568899999999999999998754
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.024 Score=58.51 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH-HHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG-RRL 246 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~-~~l 246 (483)
-|.++|++|+|||-||.+++....-+ |+. + .++ +++....+.. ++.+..+. +.-
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-----fis-v------KGP------ElL~KyIGaS-------Eq~vR~lF~rA~ 757 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-----FIS-V------KGP------ELLSKYIGAS-------EQNVRDLFERAQ 757 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e------cCH------HHHHHHhccc-------HHHHHHHHHHhh
Confidence 48899999999999999998743322 222 2 122 2344433322 22222233 333
Q ss_pred hcCceEEEEcCCCCH-------------HHHHHHhcCCCC--CCCCcEEEE-EcCCHh----HHhhCCCcceEecCCCCh
Q 038919 247 RQKKVLLVIDDVAHV-------------EQLRRLAGKRDW--FGPGSRIII-TTRDEH----LLKLHRVEEVFKLEALTY 306 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~~~~ili-TtR~~~----~~~~~~~~~~~~l~~L~~ 306 (483)
.-+||+|.||.+++. ..+..++..++. .-.|.-|+- |||..- ++.....++.+.-+.-+.
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 469999999999653 345566555441 123555554 566332 222223334444455667
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH
Q 038919 307 DEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA 344 (483)
Q Consensus 307 ~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 344 (483)
.|-.++|.........+. ....+.++.++.|..-|
T Consensus 838 ~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 777788776553222211 12356677778887644
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.91 E-value=0.0014 Score=66.70 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=42.4
Q ss_pred HhhhchhHHHHHHHHHhh----cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMG----AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+++|.++.++.+.+.|. ......+++.++||+|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 568999999999998772 233456899999999999999999999876654
No 254
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.89 E-value=0.0018 Score=57.42 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=52.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHh-cccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLL-KLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~~~~~~~~~~~~~l~~ 244 (483)
...++|.|+.|+|||||++.++..+... ...+.+.+..+....... .. .+. ..............+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPN-------WV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCC-------EE-EEEEecCCCCCCCccCHHHHHHH
Confidence 3689999999999999999998876543 223333222111100000 00 000 0000011112234556677
Q ss_pred HHhcCceEEEEcCCCCHHHHHHH
Q 038919 245 RLRQKKVLLVIDDVAHVEQLRRL 267 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~~~~~~l 267 (483)
.++..+-.++++.+.+.+.+..+
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHH
Confidence 78888999999999888765543
No 255
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.89 E-value=0.0096 Score=51.69 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=61.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEe---cccccccCCcH-HHHHHHHHHHHhcccCCCccchhhhHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLAD---VKEKYDKEGSV-ISLQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
..+++|.|+.|.|||||++.++...... .+.+++.. +.-........ ..+...+ ........+.-....-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl----~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQL----IYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHh----hccCCCCCCHHHHHHHH
Confidence 4689999999999999999998755432 23333321 00011111110 1122221 11011112222222333
Q ss_pred HHHHHhcCceEEEEcCCC---CHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCCcceEec
Q 038919 242 IGRRLRQKKVLLVIDDVA---HVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRVEEVFKL 301 (483)
Q Consensus 242 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 301 (483)
+.+.+..++-++++|+-. |....+.+...+... +..+|++|.+...... .++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 445555677788999773 232222222222211 3567888887655432 3444444
No 256
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.88 E-value=0.0035 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987544
No 257
>PRK08118 topology modulation protein; Reviewed
Probab=96.87 E-value=0.00085 Score=58.31 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|.|+|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999764
No 258
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.83 E-value=0.011 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999865
No 259
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.011 Score=54.23 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHHHhcCceEEEEcCC----C--CHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhh
Q 038919 241 MIGRRLRQKKVLLVIDDV----A--HVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKL 292 (483)
Q Consensus 241 ~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~ 292 (483)
.+.+.|...+=|++||.- | ....+-.++..+. ..|..||++|.+-.....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 456677788999999964 2 2334445554443 348889999998765444
No 260
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.81 E-value=0.0066 Score=61.48 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+..|.++|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44556666544445679999999999999999999887765533445554
No 261
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.80 E-value=0.0067 Score=55.71 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=30.6
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 156 KFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 156 ~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.+.+..+-+...++.|.|++|+||||||.+++......-..++++.
T Consensus 14 d~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 14 HKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred ehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3334333334569999999999999999888776643334445543
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.80 E-value=0.001 Score=54.89 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.80 E-value=0.0072 Score=61.18 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
..+.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566544334579999999999999999999988764433445554
No 264
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.80 E-value=0.015 Score=66.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++=|.++|++|+|||.||+++|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999854
No 265
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.79 E-value=0.012 Score=50.86 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCceEEEEcCC----CCHHHHH--HHhcCCCCCCCCcEEEEEcCCHhHHhhCC
Q 038919 239 INMIGRRLRQKKVLLVIDDV----AHVEQLR--RLAGKRDWFGPGSRIIITTRDEHLLKLHR 294 (483)
Q Consensus 239 ~~~l~~~l~~~~~LlVlDdv----~~~~~~~--~l~~~~~~~~~~~~iliTtR~~~~~~~~~ 294 (483)
.-.+.+.+-++|-+|+-|.- |..-.|+ .++..+. ..|..||++|.+..+...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34456666789999999954 4332222 2222222 46899999999998877653
No 266
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.79 E-value=0.0084 Score=51.79 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=61.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccC------CCcc----ch
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLAD------NSIR----NV 235 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------~~~~----~~ 235 (483)
...+-|++..|.||||.|...+.+...+-..++++.-+... ...+- ...++.+.-.+..... .... ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE-~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGE-RAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccCh-HHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999999888766554444333322221 11122 2222222000000000 0000 01
Q ss_pred hhhHHHHHHHHhc-CceEEEEcCCC--------CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 236 YDGINMIGRRLRQ-KKVLLVIDDVA--------HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 236 ~~~~~~l~~~l~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
.......++.+.. .-=|||||.+. +.+.+-.++... .++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCC
Confidence 1223333444444 44599999983 334444554432 5678999999976
No 267
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=0.027 Score=51.69 Aligned_cols=210 Identities=13% Similarity=0.174 Sum_probs=110.6
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc------ccceeEEEEeccc------cc---
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH------EFDGSSFLADVKE------KY--- 207 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~--- 207 (483)
+.+.++++.-..+.++.. ..+.+-..++|++|.||-|.+..+.+++-. +-+...|...... .+
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 456777777777776655 345788999999999999999888875422 1111222211100 00
Q ss_pred ------ccCCc-HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCce-EEEEcCCCCH--HHHHHHhcCCCCCCCC
Q 038919 208 ------DKEGS-VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKV-LLVIDDVAHV--EQLRRLAGKRDWFGPG 277 (483)
Q Consensus 208 ------~~~~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~~ 277 (483)
+..+. -.-+.++++..+.+...... ...+++ ++|+-.++.. +.-.++..........
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 00000 02222333333222111000 012233 5666666543 2222222222223567
Q ss_pred cEEEEEcCCH--hHHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh--C
Q 038919 278 SRIIITTRDE--HLLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKVLGSFL--F 353 (483)
Q Consensus 278 ~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~la~~l--~ 353 (483)
+|+|+...+- -+.+.-...-.++++..+++|-...++..+-+....-+ .+++.+|++.++|+---.-.+-... .
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8887633211 11111122335899999999999999888755443322 5889999999999953222221111 1
Q ss_pred C---------CCHHHHHHHHHHhcc
Q 038919 354 G---------RPVDEWTSTLERLKR 369 (483)
Q Consensus 354 ~---------~~~~~~~~~l~~l~~ 369 (483)
+ -+..+|+.++.+...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHH
Confidence 1 235678888877543
No 268
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.78 E-value=0.062 Score=50.10 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH-HhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD-LISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~-~~~~~f~~~~~~ 200 (483)
+-+.+|+|+.|+|||.|.+.+.. ++-+--+..+|+
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfF 122 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFF 122 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEE
Confidence 34567899999999999998875 233333434444
No 269
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.78 E-value=0.0045 Score=58.01 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhccc----CCCccchhhhHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLA----DNSIRNVYDGINM 241 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~~~~~~~~~~~~ 241 (483)
...++|.|++|+|||||.+.++..+... .+.+++.. ......... .++... ...+.... .....+... ...
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~-~ei~~~-~~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDER-SEIAGC-VNGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhH-HHHHHH-hcccccccccccccccccchH-HHH
Confidence 4679999999999999999999877643 23333321 111100000 111111 00000000 001111111 222
Q ss_pred HHHHHh-cCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCHhH
Q 038919 242 IGRRLR-QKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRDEHL 289 (483)
Q Consensus 242 l~~~l~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~ 289 (483)
+...++ ..+-++++|.+...+.+..+...+. .|..+|+||.+..+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 333333 5788999999988777776665542 57789999997655
No 270
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.77 E-value=0.0036 Score=58.34 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+|.++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887643
No 271
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.76 E-value=0.0066 Score=58.63 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+..+|..+-....++.|+|++|+|||+|+.+++....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455554434467899999999999999999987654
No 272
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.095 Score=47.63 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=37.9
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+=|.+.++++|.+.+-. +-..+.-+.+||++|.|||-+|++.+.+...-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 5677888999998876532 11234568899999999999999988765443
No 273
>PTZ00494 tuzin-like protein; Provisional
Probab=96.75 E-value=0.28 Score=48.49 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=88.1
Q ss_pred HhhhchhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAG-CNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI 221 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 221 (483)
..+|.|+.|=..+.+.|... ...+++++++|.-|.|||+|.+....+-. -..+|+. ++.. .+. +..+.
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD-VRg~---EDt----LrsVV 439 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD-VGGT---EDT----LRSVV 439 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE-ecCC---cch----HHHHH
Confidence 67999999988888888763 34589999999999999999988776422 2345543 5433 222 33333
Q ss_pred HHHhcccCCCccchhhhHH----HHHHHHhcCceEEEEcCC--CCHHH-H---HHHhcCCCCCCCCcEEEEEcCCHhHHh
Q 038919 222 SDLLKLADNSIRNVYDGIN----MIGRRLRQKKVLLVIDDV--AHVEQ-L---RRLAGKRDWFGPGSRIIITTRDEHLLK 291 (483)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~LlVlDdv--~~~~~-~---~~l~~~~~~~~~~~~iliTtR~~~~~~ 291 (483)
+.+.-.....-.+.-+.+. .-+....++.-+||+-=- .+..- . -.|... ..-|+|++----+.+..
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMKALTP 515 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHhhhch
Confidence 3332221112222222211 112223345555655322 22211 1 112211 34567776443322211
Q ss_pred ---hCCCcceEecCCCChHHHHHHHHHhh
Q 038919 292 ---LHRVEEVFKLEALTYDEAFQLFCLKA 317 (483)
Q Consensus 292 ---~~~~~~~~~l~~L~~~ea~~L~~~~~ 317 (483)
..+.-..|.+++++.++|.++.+...
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 12233568999999999999887654
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.75 E-value=0.012 Score=51.96 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=60.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc--H---HHHHHHHHHHHh-----cccCCCccch
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS--V---ISLQKQLISDLL-----KLADNSIRNV 235 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~---~~l~~~ll~~~~-----~~~~~~~~~~ 235 (483)
..+++|.|+.|+|||||++.++..... ..+.+++.... ... ... . .....+++..+. .........-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 468999999999999999999875443 34455553211 110 000 0 011111222211 0101111111
Q ss_pred hhhHHHHHHHHhcCceEEEEcCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEcCCHhHH
Q 038919 236 YDGINMIGRRLRQKKVLLVIDDVA---HVEQLRRLAGKRDWF-GP-GSRIIITTRDEHLL 290 (483)
Q Consensus 236 ~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-~~~iliTtR~~~~~ 290 (483)
....-.+.+.+...+-++++|+.. |....+.+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222223455566778899999873 333333222222111 22 56788888876654
No 275
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0039 Score=55.64 Aligned_cols=29 Identities=41% Similarity=0.559 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999988765
No 276
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.025 Score=51.42 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=36.4
Q ss_pred HhhhchhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 143 KELVGIESRLEKLKFLMGA-----------GCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...=|..++++.+.+.... +-+.+.-|.++|++|.|||-+|++++++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 4556777888887775432 223456689999999999999999999654
No 277
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0074 Score=52.85 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
..+++|.|+.|+|||||++.++..... ..+.+.+....-....... ....-....-.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~------------------~LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYI------------------DLSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccC------------------CCCHHHHHHHHHHHH
Confidence 368999999999999999998875443 2344444321000000000 011111222234445
Q ss_pred HhcCceEEEEcCCC---CHHH---HHHHhcCCCCCCCCcEEEEEcCCHhHHhh
Q 038919 246 LRQKKVLLVIDDVA---HVEQ---LRRLAGKRDWFGPGSRIIITTRDEHLLKL 292 (483)
Q Consensus 246 l~~~~~LlVlDdv~---~~~~---~~~l~~~~~~~~~~~~iliTtR~~~~~~~ 292 (483)
+..++-++++|+-. |... +..++..+.. ..+..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHH
Confidence 56677899999873 3322 2222222111 123567888887765543
No 278
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.74 E-value=0.037 Score=59.68 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=37.6
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 368999988888876655432334578999999999999999998754
No 279
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.73 E-value=0.015 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+..|+|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999998654
No 280
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.72 E-value=0.00094 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++.|.|.+|+|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.72 E-value=0.0082 Score=52.50 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..+++|.|+.|+|||||.+.++..... ..+.+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 468999999999999999999875433 2344444
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.028 Score=54.36 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++.+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998877654
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.71 E-value=0.0014 Score=58.62 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=23.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988754
No 284
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.69 E-value=0.0098 Score=60.78 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
.++.+..++.. ...++.|+|+.|+||||+...+.+.+...-...+-+.+.-+.. ..+. ... ..
T Consensus 230 ~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~-~~~~------------~q~-~v 292 (486)
T TIGR02533 230 LLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ-IEGI------------GQI-QV 292 (486)
T ss_pred HHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee-cCCC------------ceE-EE
Confidence 34455555542 2358999999999999999988887654322333333211110 0010 000 00
Q ss_pred CccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 231 SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
....-......++..++..|=.|++.++.+.+.....+..
T Consensus 293 ~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 293 NPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred ccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 0111123456788899999999999999998876655443
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.019 Score=56.80 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 286
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.69 E-value=0.0066 Score=58.77 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+..+|..+-....++-|+|++|+|||+|+.+++....
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 344455554334467899999999999999999987653
No 287
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.68 E-value=0.0075 Score=57.59 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=55.7
Q ss_pred HHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCc
Q 038919 154 KLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSI 232 (483)
Q Consensus 154 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 232 (483)
.|...|. .+-+..+++-|+|+.|+||||||.++.......-..++|+. .... +-......+.-.+....-..+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~-----ld~~~a~~lGvdl~rllv~~P 113 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-AEHA-----LDPEYAESLGVDLDRLLVVQP 113 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS--------HHHHHHTT--GGGEEEEE-
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-Cccc-----chhhHHHhcCccccceEEecC
Confidence 3444554 22233679999999999999999999988766655556654 2211 112333333222211111223
Q ss_pred cchhhhHHHHHHHHhcC-ceEEEEcCCCC
Q 038919 233 RNVYDGINMIGRRLRQK-KVLLVIDDVAH 260 (483)
Q Consensus 233 ~~~~~~~~~l~~~l~~~-~~LlVlDdv~~ 260 (483)
...++....+...++.. --++|+|-|..
T Consensus 114 ~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 114 DTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred CcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 44455666666666643 45889998843
No 288
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.68 E-value=0.019 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999887665
No 289
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.012 Score=51.50 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..+++|.|+.|.|||||++.++..... ..+.+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKV 59 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE
Confidence 468999999999999999998875432 2344443
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.024 Score=56.90 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887654
No 291
>PRK07261 topology modulation protein; Provisional
Probab=96.67 E-value=0.0013 Score=57.32 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.025 Score=55.37 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++++|++|+||||++..++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999876544
No 293
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.64 E-value=0.0082 Score=54.86 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.++.+.+.....+..+|+|+|+||.|||||..++...+...
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444334457899999999999999999999887754
No 294
>PTZ00035 Rad51 protein; Provisional
Probab=96.64 E-value=0.0087 Score=58.16 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..|.++|..+-....++.|+|++|+|||+|+..++-...
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 445566665444568999999999999999998876443
No 295
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.033 Score=51.39 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=39.5
Q ss_pred HhhhchhHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 143 KELVGIESRLEKLKFLMGAG-----------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
.+.=|.+.+++++.+..... -..+.-|.+||.+|.|||-||++++++.+.-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 45667899999998865431 12345688999999999999999999766544
No 296
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.64 E-value=0.0039 Score=58.97 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=65.9
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
..+.+.++|...-...+.+.|.|+.|+||||++..+...+...-...+.+.+..+..-. .. .....
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-~~-------------~~~~~ 177 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-GP-------------NQIQI 177 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-CS-------------SEEEE
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-cc-------------ceEEE
Confidence 33455555543222357899999999999999999998776652233333322211100 00 00000
Q ss_pred Cc-cchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEE-EEEcCC
Q 038919 231 SI-RNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRI-IITTRD 286 (483)
Q Consensus 231 ~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~i-liTtR~ 286 (483)
.. .+.....+.+...++..+=.++++.+.+.+....+... ..|..+ +-|...
T Consensus 178 ~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 178 QTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp EEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred EeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 01 23345566788889999999999999887777664332 346666 555553
No 297
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.63 E-value=0.23 Score=50.99 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=37.2
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|....+..+.+.+.........+.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468899888888777665433344568999999999999999987753
No 298
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.62 E-value=0.007 Score=62.47 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+..++..++|++|+||||||.-++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 34689999999999999999999884
No 299
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.04 Score=56.80 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=94.2
Q ss_pred HhhhchhHHHHHHHHH---hhcCC-------CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCc
Q 038919 143 KELVGIESRLEKLKFL---MGAGC-------NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGS 212 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~---L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 212 (483)
.+..|.++..+++.+. |.... .-++-+.++|++|.|||.||++++....-.| |.. +.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF----f~i--SG------- 216 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSI--SG------- 216 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc----eec--cc-------
Confidence 5678988766666654 44321 1255689999999999999999997543322 111 00
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH----------------HHHHHHhcCCCCCCC
Q 038919 213 VISLQKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV----------------EQLRRLAGKRDWFGP 276 (483)
Q Consensus 213 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~ 276 (483)
.+. ..-..+. ..........+..++.|+++++|.++.. ..+..++-..+.++.
T Consensus 217 -S~F----VemfVGv------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 217 -SDF----VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -hhh----hhhhcCC------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 000 1111111 1111223344445677899999988532 245666666665553
Q ss_pred CcEEE-E--EcCCH----hHHhhCCCcceEecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHH
Q 038919 277 GSRII-I--TTRDE----HLLKLHRVEEVFKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLA 344 (483)
Q Consensus 277 ~~~il-i--TtR~~----~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 344 (483)
+.-|| + |.|.. .++.....++.+.++..+...-.+.+.-++-.....+.- + ...|++.+-|.-.|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d-l~~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D-LKKIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C-HHHHhhhCCCcccc
Confidence 33233 2 44432 122233455667777777777777777665443322111 1 22366777776543
No 300
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.61 E-value=0.0082 Score=61.63 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+..|.++|..+-....++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566667655555689999999999999999999998766555555554
No 301
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.61 E-value=0.045 Score=56.79 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=35.0
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+++|....+.++.+.+..-......|.|+|.+|+||+.||+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 47899998888777665432222345889999999999999996553
No 302
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.60 E-value=0.0014 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
|.|+|++|+|||+||..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46999999999999999998776543
No 303
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.59 E-value=0.0019 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 304
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.59 E-value=0.0037 Score=57.45 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=27.4
Q ss_pred CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 163 CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 163 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
.+...+++|.|++|+|||||++.++..+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34578999999999999999999998877643
No 305
>PRK10436 hypothetical protein; Provisional
Probab=96.59 E-value=0.016 Score=58.55 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
.++.+.+++.. ...++.|+|+.|+||||....+.+.+.......+-+.+.-+.. ..+. .. ...
T Consensus 206 ~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~-l~gi------------~Q-~~v 268 (462)
T PRK10436 206 QLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP-LAGI------------NQ-TQI 268 (462)
T ss_pred HHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc-CCCc------------ce-Eee
Confidence 44455555543 2368999999999999998877776544322222222111110 0000 00 000
Q ss_pred CccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 231 SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
....-......++..++..|=.|++.++.+.+.....+..
T Consensus 269 ~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 269 HPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred CCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 1111124567788899999999999999998877654443
No 306
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.58 E-value=0.0032 Score=61.62 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccce---eEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG---SSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMI 242 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l 242 (483)
...|.|+|+.|+||||++..++..+....+. .+.+.+.-+. .. ..... .. ....... ...+.......+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-~~----~~~~~-~~-~~v~Q~~-v~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-VY----DEIET-IS-ASVCQSE-IPRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-ec----ccccc-cc-ceeeeee-ccccccCHHHHH
Confidence 3799999999999999999999877544321 2222211111 00 00000 00 0000000 111223455667
Q ss_pred HHHHhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 243 GRRLRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 243 ~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
+..++..|-.+++..+.+.+.....+..
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 8889999999999999998887655443
No 307
>PTZ00301 uridine kinase; Provisional
Probab=96.58 E-value=0.003 Score=56.93 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775443
No 308
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.57 E-value=0.0029 Score=57.38 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 309
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.57 E-value=0.012 Score=60.41 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHhcCceEEEEcCC------CCHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCCcceEecCC
Q 038919 242 IGRRLRQKKVLLVIDDV------AHVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRVEEVFKLEA 303 (483)
Q Consensus 242 l~~~l~~~~~LlVlDdv------~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~ 303 (483)
+...+-.++-+||||.- ++.+.++..+.. -.+.||+.|.++....... ..++.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-----f~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-----FEGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 34445578889999965 334455554443 2345888999998877653 45566554
No 310
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.57 E-value=0.0057 Score=52.17 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=46.3
Q ss_pred EeCCCCCChhHHHHHHHHHhhcccceeEEEEeccc----ccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 171 IWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKE----KYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 171 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~----~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
|.|+||+||||+|..++.++. | ..+. +.+ ...... .+... +...+... ..-+.+.....+...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is-~~~llr~~~~~~s---~~g~~-i~~~l~~g--~~vp~~~v~~ll~~~l 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHIS-VGDLLREEIKSDS---ELGKQ-IQEYLDNG--ELVPDELVIELLKERL 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEE-HHHHHHHHHHTTS---HHHHH-HHHHHHTT--SS--HHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceec-hHHHHHHHHhhhh---HHHHH-HHHHHHhh--ccchHHHHHHHHHHHH
Confidence 689999999999999999652 2 2222 111 111111 11111 22222222 2223344556666666
Q ss_pred hcC--ceEEEEcCC-CCHHHHHHHhc
Q 038919 247 RQK--KVLLVIDDV-AHVEQLRRLAG 269 (483)
Q Consensus 247 ~~~--~~LlVlDdv-~~~~~~~~l~~ 269 (483)
... ..-+|||++ .+.++.+.|..
T Consensus 69 ~~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 69 EQPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp HSGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhhcccceeeeeeccccHHHHHHHHH
Confidence 533 456889999 56676666654
No 311
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.55 Score=44.82 Aligned_cols=167 Identities=12% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc---------cceeEEEEecccccccCCcHHHHHHHHHH
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE---------FDGSSFLADVKEKYDKEGSVISLQKQLIS 222 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (483)
++.+.+.+..+ .-.++..++|..|+||+++|..+++.+-.. .+..+.+.+..+ .... .+-..++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--~~i~--vd~Ir~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--KDLS--KSEFLSAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--CcCC--HHHHHHHHH
Confidence 34455555532 235788899999999999999999876211 111111111000 0000 011111111
Q ss_pred HHhcccCCCccchhhhHHHHHHHHhcCceEEEEcCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCCH-hHHhh-CCCcce
Q 038919 223 DLLKLADNSIRNVYDGINMIGRRLRQKKVLLVIDDVAHV--EQLRRLAGKRDWFGPGSRIIITTRDE-HLLKL-HRVEEV 298 (483)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~ 298 (483)
.+.-. + .-.+.+=++|+||++.. .....|+..+..-++++.+|++|.+. .+.+. ......
T Consensus 80 ~~~~~----~------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 80 KLYFS----S------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HhccC----C------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 11000 0 00135668889998644 44555665555446777777655443 34432 345678
Q ss_pred EecCCCChHHHHHHHHHhhccCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 038919 299 FKLEALTYDEAFQLFCLKAFETQKPREEYVHLSQLVVNYAGGLPLALKV 347 (483)
Q Consensus 299 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 347 (483)
+++.+++.++..+.+.... . + .+.+..++..++|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999998886541 1 1 13355556666652244444
No 312
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.56 E-value=0.006 Score=65.85 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
.+.++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999998764
No 313
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.002 Score=55.50 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+.|.|+.|+|||||.+.++--.+..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 3579999999999999999998765544
No 314
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.002 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37899999999999999999998764
No 315
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.56 E-value=0.0074 Score=52.92 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHH-HHHhcccCC---Cccc-------
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLI-SDLLKLADN---SIRN------- 234 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll-~~~~~~~~~---~~~~------- 234 (483)
...|.|+|..|-||||.|...+.+...+-..+.++.-+.... ..+- ...++.+- -.+...... ...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE-~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGE-RNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCH-HHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468999999999999999998887665544444443333221 1122 22222210 000000000 0011
Q ss_pred hhhhHHHHHHHHhc-CceEEEEcCCC--------CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 235 VYDGINMIGRRLRQ-KKVLLVIDDVA--------HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 235 ~~~~~~~l~~~l~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
........++.+.. .-=|||||.+. +.+.+-.++... .++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r---p~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR---PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC---CCCCEEEEECCCC
Confidence 11123333444444 45599999983 234444444432 5678999999975
No 316
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.56 E-value=0.065 Score=57.30 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++|....+.++.+....-......|.|+|.+|+||+++|+.+.+.-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 457888887777776655422233458899999999999999998753
No 317
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0062 Score=51.94 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=28.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF 199 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 199 (483)
...++.++|.+|.||||+|.++...+.........
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45799999999999999999999998876544333
No 318
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.55 E-value=0.0024 Score=57.84 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+..+|+|.|++|+|||||+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 319
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.55 E-value=0.0049 Score=60.48 Aligned_cols=107 Identities=20% Similarity=0.153 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc-e-eEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD-G-SSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
..+.|+|+.|+||||++..+.+.+....+ . .+.+.+..+..-. +. ..+ .. ... .....+.......++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~-~~~----~~-~~q--~evg~~~~~~~~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SP-DDL----LP-PAQ--SQIGRDVDSFANGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CC-cee----ec-ccc--cccCCCccCHHHHHHH
Confidence 47889999999999999999887754332 2 2333222111100 00 000 00 000 0001122345567888
Q ss_pred HHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcC
Q 038919 245 RLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTR 285 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR 285 (483)
.++..|=.|+++.+.+.+..+..+... ..|..++-|-.
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlH 258 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLH 258 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeC
Confidence 899999999999999998877644432 23444444444
No 320
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.54 E-value=0.0042 Score=51.26 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+..++-+.|...-....++.+.|.-|.|||||++.+++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443222346899999999999999999998653
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.034 Score=54.19 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++.|+|+.|+||||++..++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876544
No 322
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.0035 Score=52.62 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 323
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.53 E-value=0.0026 Score=63.76 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=39.4
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 47999999999998877644 45899999999999999999987654
No 324
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0099 Score=54.63 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=65.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc--cCCcHHHHHHHHHHHHhccc------CCCccchhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD--KEGSVISLQKQLISDLLKLA------DNSIRNVYD 237 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~ll~~~~~~~------~~~~~~~~~ 237 (483)
..+++|+|.+|+|||||++.+..-..... +.+++..- +... .... .....+++....... +.....-..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~-~i~~~~~~~~-~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGK-DITKLSKEER-RERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCc-chhhcchhHH-HHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999998665443 33444311 1100 1111 223333444322111 111111112
Q ss_pred hHHHHHHHHhcCceEEEEcCCCCH------HHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhC
Q 038919 238 GINMIGRRLRQKKVLLVIDDVAHV------EQLRRLAGKRDWFGPGSRIIITTRDEHLLKLH 293 (483)
Q Consensus 238 ~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~ 293 (483)
..-.+.+.+.-++-++|.|...+. .++-.++..+.. ..|...++.|.+-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 223456677788999999987322 333333333221 2356677777776665543
No 325
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.015 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.|.|++|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999974
No 326
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.48 E-value=0.02 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.++-.|+|..|+|||||...++.
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHh
Confidence 57999999999999999999886
No 327
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.049 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+++.++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988765
No 328
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.47 E-value=0.014 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998875
No 329
>PRK05439 pantothenate kinase; Provisional
Probab=96.47 E-value=0.0073 Score=57.57 Aligned_cols=50 Identities=32% Similarity=0.412 Sum_probs=33.5
Q ss_pred HhhhchhHHHHHHHH-Hhhc-CCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKF-LMGA-GCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~-~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.-.+.....+....+ .+.. ....+-+|+|.|.+|+||||+|..+...+..
T Consensus 61 ~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 61 NLYVAANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHHhhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444444444444 3332 3345789999999999999999999887654
No 330
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.46 E-value=0.011 Score=56.28 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=69.4
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHH--HHh-hcccceeEEEEecccccc-----------c
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVY--DLI-SHEFDGSSFLADVKEKYD-----------K 209 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~--~~~-~~~f~~~~~~~~~~~~~~-----------~ 209 (483)
.+-+|..+-.--..+|. .++...|.+.|.+|.|||-||.+.. +-+ +..|...+.....-.... .
T Consensus 225 Gi~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 225 GIRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 34556655555455555 3467899999999999999986654 222 223433332211111111 1
Q ss_pred CCcHHHHHHHHHHHHhcccCCCccchhhhHHHH----------HHHHhcC---ceEEEEcCCCC--HHHHHHHhcCCCCC
Q 038919 210 EGSVISLQKQLISDLLKLADNSIRNVYDGINMI----------GRRLRQK---KVLLVIDDVAH--VEQLRRLAGKRDWF 274 (483)
Q Consensus 210 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~---~~LlVlDdv~~--~~~~~~l~~~~~~~ 274 (483)
...+.+-...-+..+....... ...+..+ ..+++++ +.++|+|.+.+ +.++..++...
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~--- 375 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRA--- 375 (436)
T ss_pred ccchHHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhc---
Confidence 1111122222223322222111 1111111 0122333 56999999975 46677766543
Q ss_pred CCCcEEEEEcCCH
Q 038919 275 GPGSRIIITTRDE 287 (483)
Q Consensus 275 ~~~~~iliTtR~~ 287 (483)
++|++|+.|.--.
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 8999999987643
No 331
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.46 E-value=0.011 Score=56.95 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..|..+|..+-....++.|+|++|+|||+|+..++..
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 3455555544445689999999999999999998864
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.46 E-value=0.007 Score=52.37 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
..+++|.|+.|.|||||.+.++..... ..+.+++.... .. .... ... ......... ....-....-.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~-~~~~-~~~----~~~~i~~~~-qLS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VS-FASP-RDA----RRAGIAMVY-QLSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CC-cCCH-HHH----HhcCeEEEE-ecCHHHHHHHHHHHH
Confidence 368999999999999999999875433 34455543211 11 0000 010 010000000 011112222234445
Q ss_pred HhcCceEEEEcCCC---CHHH---HHHHhcCCCCCCCCcEEEEEcCCHhHHh
Q 038919 246 LRQKKVLLVIDDVA---HVEQ---LRRLAGKRDWFGPGSRIIITTRDEHLLK 291 (483)
Q Consensus 246 l~~~~~LlVlDdv~---~~~~---~~~l~~~~~~~~~~~~iliTtR~~~~~~ 291 (483)
+-..+-++++|+.. |... +..++..+. ..+..||++|.+.....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHH
Confidence 55677889999873 3332 323332221 24667888888876443
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.45 E-value=0.015 Score=54.56 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=39.0
Q ss_pred HhhhchhHHHHH-HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEE
Q 038919 143 KELVGIESRLEK-LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF 199 (483)
Q Consensus 143 ~~~vGR~~~l~~-l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 199 (483)
..+......+.. ..++|.. .+..++.|.|.+|+|||||+..+...+.......+.
T Consensus 82 ~~il~~n~~~a~~~r~~~~~--~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 82 IDVLDKNNRLAERNRARFAA--RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHhHHHHHHHHHHHHh--cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 455555555544 3344442 357899999999999999999999988766544443
No 334
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.44 E-value=0.029 Score=61.55 Aligned_cols=279 Identities=14% Similarity=0.097 Sum_probs=128.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc----ceeEEEEecccccccCCcHHH-HHHHHHHHHhcccCCCccchhhhHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF----DGSSFLADVKEKYDKEGSVIS-LQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~-l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
.-+.|+|.+|.||||+...++-...... +..+++. +............ .+...+...... ..........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~----~~~~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFS----QGIAKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhc----cCCcchhhHH
Confidence 3689999999999999999887544332 1122221 1110000000011 111111111111 1112222222
Q ss_pred HHHHHhcCceEEEEcCCCCHH---------HHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCCcceEecCCCChHHHHHH
Q 038919 242 IGRRLRQKKVLLVIDDVAHVE---------QLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRVEEVFKLEALTYDEAFQL 312 (483)
Q Consensus 242 l~~~l~~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~L~~~ea~~L 312 (483)
..+.+...++++.+|.++... .+..+.+. -+..++|+|+|....-........+++..+.++.-...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 357788999999999986542 13333333 46889999998664433332334455555555443332
Q ss_pred HH--------HhhccCCCCC-chH-HH---HHHHHHHHhCCChHHHHHHHHHhC------CCCHHHHHHHHHHhccCCCc
Q 038919 313 FC--------LKAFETQKPR-EEY-VH---LSQLVVNYAGGLPLALKVLGSFLF------GRPVDEWTSTLERLKREPEN 373 (483)
Q Consensus 313 ~~--------~~~~~~~~~~-~~~-~~---~~~~i~~~~~G~PLal~~la~~l~------~~~~~~~~~~l~~l~~~~~~ 373 (483)
.. ...++..... ..+ .. -..+-.+....+|+.|.+.+..-. .....-++..++.+-...+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~ 453 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDE 453 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccch
Confidence 22 1111111111 000 00 012223334888999988874433 13344555555554332221
Q ss_pred cHHHHHHHhhcCCcH-HHHH-HHhhhhcCCC---------CCCHHHHHHHHHhCCCC------hhhhHHHHh---hCCce
Q 038919 374 EILDILQISFDGLKE-AEKE-IFLDVACFFK---------GEKRDYVSKILDSCGFE------PVIGIGVLI---EKSLL 433 (483)
Q Consensus 374 ~v~~~l~~s~~~L~~-~~k~-~l~~la~f~~---------~~~~~~l~~~~~~~~~~------~~~~l~~L~---~~sLi 433 (483)
.=...+...|..+.. .... ++..+|.+.. ....+.+...+...... ....+..+. +.|++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~~~~~~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~glL 533 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAALLFEKLDEEFTEFLLKDDIVDYLLNQAEDEDDLIALALALEALLKLLQHGLL 533 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHhcchH
Confidence 111123334444433 3333 4544444321 11222222222221111 111233333 77877
Q ss_pred eEecCCeEEc-cHHHHHHHHHH
Q 038919 434 TICESDRLWM-HDLLLEMGRQI 454 (483)
Q Consensus 434 ~~~~~~~~~m-H~lvr~~~~~~ 454 (483)
...+.+.|.+ |..++++--..
T Consensus 534 ~~~~~~~~~F~~~tFqey~~a~ 555 (824)
T COG5635 534 VERAKIVYAFAHATFQEYFAAK 555 (824)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 7665666654 77688864433
No 335
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.44 E-value=0.019 Score=51.85 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999988743
No 336
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.01 Score=53.27 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
...+++|+|++|+||||||+.+...+.......+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 457999999999999999999999875543334444
No 337
>PRK03839 putative kinase; Provisional
Probab=96.43 E-value=0.0026 Score=56.08 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 338
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.43 E-value=0.011 Score=57.48 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..|..+|..+-....++-|+|++|+|||+|+..++..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 3455555544344678999999999999999988854
No 339
>PRK04040 adenylate kinase; Provisional
Probab=96.43 E-value=0.0034 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+|+|+|++|+||||+++.+++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 340
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.42 E-value=0.01 Score=57.13 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccC-CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKE-GSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
...++|+|+.|+|||||++.+...+.... ..+.+.+..+..... .. . .+...............+.+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~-~--------~l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNY-V--------HLFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCE-E--------EEEecCCCCCcCccCHHHHHHH
Confidence 36899999999999999999987664432 233333222211100 00 0 0000000001111233456677
Q ss_pred HHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcE-EEEEcCCH
Q 038919 245 RLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSR-IIITTRDE 287 (483)
Q Consensus 245 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~-iliTtR~~ 287 (483)
.++..+-.+++|.+.+.+.+.. +.... .|.. ++.|+...
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHAG 253 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCC
Confidence 7888999999999988766544 33322 2322 46666643
No 341
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.41 E-value=0.023 Score=50.26 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
...++.|.|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987754
No 342
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.029 Score=52.26 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
+..++|||++|.|||-||+.++..+.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56799999999999999999999876654
No 343
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.41 E-value=0.002 Score=52.32 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhcccce
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEFDG 196 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 196 (483)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.40 E-value=0.035 Score=52.25 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...+++.++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877655
No 345
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.40 E-value=0.018 Score=53.44 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=63.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR 245 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 245 (483)
...|.|+|+.|+||||-.....+.+-.+++.++.-. -++-.++..-.+.++.+ .....+.......++..
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-----EDPIE~vh~skkslI~Q-----REvG~dT~sF~~aLraA 194 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-----EDPIEYVHESKKSLINQ-----REVGRDTLSFANALRAA 194 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-----cCchHhhhcchHhhhhH-----HHhcccHHHHHHHHHHH
Confidence 468999999999999888888877766666555432 11111111111222222 12234566778889999
Q ss_pred HhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 246 LRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 246 l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
|+..|=+|++-.+.|.+.+..-+..
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHH
Confidence 9999999999999999888765544
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.38 E-value=0.044 Score=51.75 Aligned_cols=36 Identities=19% Similarity=0.044 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
..++.|.|.+|+|||+++.+++...... -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4689999999999999999998876544 33444543
No 347
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.38 E-value=0.047 Score=49.31 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCceEEEEcCC----C--CHHHHHHHhcCCCCCCCCcEEEEEcCCHhHHhhCCCcceEec
Q 038919 239 INMIGRRLRQKKVLLVIDDV----A--HVEQLRRLAGKRDWFGPGSRIIITTRDEHLLKLHRVEEVFKL 301 (483)
Q Consensus 239 ~~~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 301 (483)
.-++.+.+...|-+|+.|+- | +...+-.++..+.. ..|..||+.|.++.++..+ ++++.+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 34566677788889999965 2 22333333332210 3477899999999888754 344444
No 348
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.028 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0077 Score=55.89 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 195 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 195 (483)
.++...+....++..+|+|+|.||+|||||...+..++..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3445555555566789999999999999999999988866533
No 350
>PRK10867 signal recognition particle protein; Provisional
Probab=96.37 E-value=0.05 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.++.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999988877655
No 351
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.36 E-value=0.0032 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999863
No 352
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.34 E-value=0.0038 Score=56.43 Aligned_cols=27 Identities=44% Similarity=0.656 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|++|+|||||++.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998664
No 353
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.34 E-value=0.038 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 354
>PRK06547 hypothetical protein; Provisional
Probab=96.33 E-value=0.0063 Score=53.02 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
....+|+|.|++|+||||+|..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 355
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.32 E-value=0.0035 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++++|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999764
No 356
>COG4240 Predicted kinase [General function prediction only]
Probab=96.31 E-value=0.014 Score=51.81 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcc-cCCCccchhhhHHHH
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKL-ADNSIRNVYDGINMI 242 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-~~~~~~~~~~~~~~l 242 (483)
+.+-+++|.|+-|+||||++..++..+...+-...-...+.+.+-....-..+.++. ..++.. +.....+..-..+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~-npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV-NPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhc-CchhcccCCCCCCchHHHHHHH
Confidence 457899999999999999999999988776621222222333333222213333332 222222 233345555566666
Q ss_pred HHHHhcCce
Q 038919 243 GRRLRQKKV 251 (483)
Q Consensus 243 ~~~l~~~~~ 251 (483)
....++++-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 666666644
No 357
>PRK00625 shikimate kinase; Provisional
Probab=96.30 E-value=0.0034 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.29 E-value=0.034 Score=53.12 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhccc--ceeEEEEeccccccc-CCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVKEKYDK-EGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
..+.|+|++|+||||++..++..+.... ...+.+.+..+..-. ... ..... ..........++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~------------v~~~~--~~~~~~~~~~l~ 198 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV------------VQLRT--SDDAISMTRLLK 198 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE------------EEEEe--cCCCCCHHHHHH
Confidence 4678999999999999999998875532 222333322221100 000 00000 001114556788
Q ss_pred HHHhcCceEEEEcCCCCHHHHHHH
Q 038919 244 RRLRQKKVLLVIDDVAHVEQLRRL 267 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~~~~~~l 267 (483)
..++..+=.||+..+.+.+.+..+
T Consensus 199 ~aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 199 ATLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HHhcCCCCEEEEeccCCHHHHHHH
Confidence 888999999999999888766543
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.0098 Score=54.44 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...++.|.|.+|+|||+|+.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999999887655544455553
No 360
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.27 E-value=0.006 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhc
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998854
No 361
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.27 E-value=0.015 Score=60.38 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
..|.+.|..+-....++.|.|.+|+|||+|+.+++.....+ -..++|+.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34555565444456899999999999999999998765554 33445543
No 362
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.028 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..+++|+|++|+||||++..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999998876543
No 363
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.049 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|.|||||.+.++...
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4689999999999999999998654
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.012 Score=50.61 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=59.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
.+++|.|..|.|||||++.++..+.. ..+.+++... .... ... .. ....+.-... ...-....-.+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~-~~~-~~----~~~~i~~~~q--lS~G~~~r~~l~~~l 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK-LPL-EE----LRRRIGYVPQ--LSGGQRQRVALARAL 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc-CCH-HH----HHhceEEEee--CCHHHHHHHHHHHHH
Confidence 68999999999999999999876543 3444554321 1100 000 11 1011000000 111122222344555
Q ss_pred hcCceEEEEcCCC---CHHHHHHHhcCCCCC-CCCcEEEEEcCCHhHHhh
Q 038919 247 RQKKVLLVIDDVA---HVEQLRRLAGKRDWF-GPGSRIIITTRDEHLLKL 292 (483)
Q Consensus 247 ~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~~~~iliTtR~~~~~~~ 292 (483)
...+-++++|+.. |......+...+... ..+..++++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5677899999883 333322222222111 225678888887766554
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.24 E-value=0.019 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||++.++....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999987543
No 366
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.24 E-value=0.041 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++++|+|+.|.|||||.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987643
No 367
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.046 Score=54.72 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCC
Q 038919 151 RLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADN 230 (483)
Q Consensus 151 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 230 (483)
..+.+.+++.. ..+++.++|+.|+||||....+...+.......+-+.+.-+.. .++. ... ..
T Consensus 246 ~~~~~~~~~~~---p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~-~~gI------------~Q~-qV 308 (500)
T COG2804 246 QLARLLRLLNR---PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ-LPGI------------NQV-QV 308 (500)
T ss_pred HHHHHHHHHhC---CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee-cCCc------------cee-ec
Confidence 44455555553 3579999999999999999999988776655544443222111 1111 000 01
Q ss_pred CccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcC
Q 038919 231 SIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTR 285 (483)
Q Consensus 231 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR 285 (483)
...---.....++..|+..|=+|.+..+.|.+..+-.... .--++.++||=
T Consensus 309 N~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqA----alTGHLVlSTl 359 (500)
T COG2804 309 NPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQA----ALTGHLVLSTL 359 (500)
T ss_pred ccccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHH----HhcCCeEeeec
Confidence 1111123456788899999999999999998877665544 22334555543
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.004 Score=52.26 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+|.|.|++|+||||+|+.+++++.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5899999999999999999997653
No 369
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.22 E-value=0.0085 Score=56.26 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 156 KFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 156 ~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.+.+..+-+..+++.|+|.+|+|||+++.+++.+...+...++|+.
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344443445689999999999999999999998888877677765
No 370
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.22 E-value=0.017 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHhh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998876
No 371
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.053 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.-+-+|-||.|+|||||+..+.-
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999999875
No 372
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.21 E-value=0.018 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.139 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.21 E-value=0.0067 Score=56.85 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
...++.|+|++|+|||+||.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999999999999876554444556654
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.20 E-value=0.035 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCChhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~ 187 (483)
.+++|+|+.|+|||||...++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999985
No 375
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.20 E-value=0.03 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 376
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.20 E-value=0.0046 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+++.++|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 377
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.068 Score=57.61 Aligned_cols=103 Identities=12% Similarity=0.227 Sum_probs=63.5
Q ss_pred HhhhchhHHHHHHHHHhhcCC---C---CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGC---N---DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISL 216 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~---~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 216 (483)
...+|-++-+..+.+.+.... . ....+.+.|+.|+|||.||++++.-+....+..+-+. .+ +.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-ms----------e~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MS----------EF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hh----------hh
Confidence 678888988988888775421 1 3567889999999999999999998765544444333 22 11
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHHHHhcCce-EEEEcCCCC
Q 038919 217 QKQLISDLLKLADNSIRNVYDGINMIGRRLRQKKV-LLVIDDVAH 260 (483)
Q Consensus 217 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~ 260 (483)
++ ...+.+..+ .... .+....+-+.++++|+ +|.||||+.
T Consensus 631 ~e--vskligsp~-gyvG-~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 631 QE--VSKLIGSPP-GYVG-KEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hh--hhhccCCCc-cccc-chhHHHHHHHHhcCCceEEEEechhh
Confidence 11 222222111 1111 1223356666777664 778999964
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.19 E-value=0.0059 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887643
No 379
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.18 E-value=0.02 Score=61.16 Aligned_cols=101 Identities=24% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHhh-cCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCC
Q 038919 153 EKLKFLMG-AGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNS 231 (483)
Q Consensus 153 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 231 (483)
..|..+|. .+-...+++-|+|++|+|||||+.+++......-..++|+. ..+... ....+.+.-.+....-..
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId-~E~t~~-----~~~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID-AEHALD-----PDYAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-Cccchh-----HHHHHHcCCChhHeEEec
Confidence 34555565 34344689999999999999999988776555444555654 221111 112222110000000112
Q ss_pred ccchhhhHHHHHHHHh-cCceEEEEcCCC
Q 038919 232 IRNVYDGINMIGRRLR-QKKVLLVIDDVA 259 (483)
Q Consensus 232 ~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 259 (483)
..+.+.....+...++ +..-|||+|.+.
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2334445555555554 467799999883
No 380
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.018 Score=50.65 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
..+++|.|+.|.|||||++.++..... ..+.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 468999999999999999999865432 3444444
No 381
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.045 Score=49.24 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|.|||||++.++...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998743
No 382
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0043 Score=54.16 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+.+.++|.||+||||+|++++..+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 578899999999999999999987765
No 383
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.17 E-value=0.032 Score=58.36 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccC
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLAD 229 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 229 (483)
..++.+.+++.. ...+|.|+|+.|+||||+...+.+.+...-...+-+.+.-+.. ..+. ... .
T Consensus 303 ~~~~~l~~~~~~---~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~-~~~~------------~q~-~ 365 (564)
T TIGR02538 303 DQKALFLEAIHK---PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN-LPGI------------NQV-N 365 (564)
T ss_pred HHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec-CCCc------------eEE-E
Confidence 345556655543 2368999999999999999887776643211122222111110 0010 000 0
Q ss_pred CCccchhhhHHHHHHHHhcCceEEEEcCCCCHHHHHHHhcC
Q 038919 230 NSIRNVYDGINMIGRRLRQKKVLLVIDDVAHVEQLRRLAGK 270 (483)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 270 (483)
.....-......++..++..|=.|++.++.+.+.....+..
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~a 406 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA 406 (564)
T ss_pred eccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHH
Confidence 00111124566788899999999999999998877655444
No 384
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.17 E-value=0.061 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988764
No 385
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.16 E-value=0.033 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999865
No 386
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.16 E-value=0.024 Score=60.50 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
...|+|+|..|+|||||++-+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988763
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.15 E-value=0.042 Score=53.62 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=49.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh--cccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS--HEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
.+++.++|+.|+||||-...++.++. ..-..+.++. .+....-..-+-+....+++..-....+..++...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 68999999999999976666666554 2223333332 1222221122223344444443333334444443333
Q ss_pred HHHhcCceEEEEcCCC----C---HHHHHHHhcC
Q 038919 244 RRLRQKKVLLVIDDVA----H---VEQLRRLAGK 270 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~----~---~~~~~~l~~~ 270 (483)
.+++. =+|.+|-+. | .++++.+...
T Consensus 278 -~l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 278 -ALRDC-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred -HhhcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 23344 366678662 2 3556666655
No 388
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.15 E-value=0.035 Score=55.73 Aligned_cols=40 Identities=35% Similarity=0.520 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVK 204 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 204 (483)
..+.++|.|.+|+|||||+..++.....+.+..+.+.-+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG 182 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG 182 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec
Confidence 3478999999999999999999887765544444444343
No 389
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.13 E-value=0.062 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~ 188 (483)
+++|+|+.|+|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999998874
No 390
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.13 E-value=0.0087 Score=56.73 Aligned_cols=53 Identities=30% Similarity=0.276 Sum_probs=42.2
Q ss_pred HhhhchhHHHHH---HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc
Q 038919 143 KELVGIESRLEK---LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 195 (483)
Q Consensus 143 ~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 195 (483)
..|||..+-.+. +.++..++.-..+.|.|.|++|.|||+||..+++.+...-+
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 679998765554 55666665555789999999999999999999999876644
No 391
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.11 E-value=0.033 Score=56.03 Aligned_cols=40 Identities=35% Similarity=0.431 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVK 204 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 204 (483)
..+.++|.|.+|+|||||+..+++....+....+.+..+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liG 181 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVG 181 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 3478999999999999999999987764433343333343
No 392
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.11 Score=46.85 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|+|||||++.++..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998864
No 393
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.058 Score=47.28 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+..+++|.|+.|.||||+.+.++.-+..
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 4589999999999999999999985543
No 394
>PRK15115 response regulator GlrR; Provisional
Probab=96.09 E-value=1.1 Score=45.76 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=33.2
Q ss_pred hhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 144 ELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 144 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.++|....+..+.+....-......+.|+|.+|+|||++|+.+.+.-
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 57787777666655443322233567899999999999999887743
No 395
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.08 E-value=0.031 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998754
No 396
>PRK14528 adenylate kinase; Provisional
Probab=96.08 E-value=0.032 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.+.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 397
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.06 E-value=0.011 Score=56.82 Aligned_cols=54 Identities=30% Similarity=0.266 Sum_probs=38.5
Q ss_pred HhhhchhHHHHH---HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccce
Q 038919 143 KELVGIESRLEK---LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG 196 (483)
Q Consensus 143 ~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 196 (483)
..+||.....+. +.++...+.-..+.+.|.|++|.|||+||..+++.+....|.
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 579998876655 445666554346899999999999999999999998877654
No 398
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.05 E-value=0.02 Score=56.04 Aligned_cols=102 Identities=20% Similarity=0.304 Sum_probs=57.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGR 244 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 244 (483)
.++=+-|||..|.|||-|.-.+|+.+...-...+-+ ..++..+.+.+-.. . .....+..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF---------h~Fm~~vh~~l~~~----~-----~~~~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF---------HEFMLDVHSRLHQL----R-----GQDDPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc---------cHHHHHHHHHHHHH----h-----CCCccHHHHHH
Confidence 356788999999999999999999764321111111 11223333332221 1 11122334556
Q ss_pred HHhcCceEEEEcCC--C---CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 245 RLRQKKVLLVIDDV--A---HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 245 ~l~~~~~LlVlDdv--~---~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
.+.++..||.||.+ . +.-.+..|+..+. ..|. +||+|.|.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 66777789999977 2 3344555555443 3455 55555554
No 399
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.03 E-value=0.14 Score=46.05 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
...+++|.|+.|.|||||++.++....
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 346899999999999999999987543
No 400
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.03 E-value=0.095 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|+|+.|.|||||++.++.-..
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 46899999999999999999987553
No 401
>PRK13947 shikimate kinase; Provisional
Probab=96.02 E-value=0.0054 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.|.|.|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998754
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.02 E-value=0.025 Score=54.44 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887754
No 403
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.02 E-value=0.038 Score=55.29 Aligned_cols=41 Identities=37% Similarity=0.536 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKE 205 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 205 (483)
..+.++|.|.+|+|||+|+..++.....+....+.+.-+.+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE 182 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 35789999999999999999999877655444444444443
No 404
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.07 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998643
No 405
>PRK14531 adenylate kinase; Provisional
Probab=96.01 E-value=0.05 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.|.|.|++|+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999865
No 406
>PF13245 AAA_19: Part of AAA domain
Probab=96.00 E-value=0.0072 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+++.|.|++|.|||+++.+....+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678889999999996665555443
No 407
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.00 E-value=0.0072 Score=52.44 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=32.5
Q ss_pred hhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 145 LVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 145 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
+||....+.++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467778888887766543233356789999999999999999884
No 408
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.00 E-value=0.045 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 409
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.00 E-value=0.011 Score=49.70 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEE
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFL 200 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 200 (483)
++|.|+|..|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999988754 4443333
No 410
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.99 E-value=0.069 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998754
No 411
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.98 E-value=0.069 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999864
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.97 E-value=0.0062 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 413
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.97 E-value=0.028 Score=58.28 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 152 LEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 152 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
+..|.++|..+-....++.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34455566544344678999999999999999999987655555666664
No 414
>PRK15453 phosphoribulokinase; Provisional
Probab=95.97 E-value=0.011 Score=55.04 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....+|+|.|.+|+||||+|+.+++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999999987754
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.08 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|+|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 46899999999999999999887654
No 416
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.96 E-value=0.012 Score=57.88 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=38.1
Q ss_pred HhhhchhHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCChhHHHHHHHHHhhccc
Q 038919 143 KELVGIESRLEKLKFLMGAG------------CNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 194 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 194 (483)
.++||.++..+.+.-.+... ...++-+.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 56788888777776544421 11246789999999999999999999775443
No 417
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.95 E-value=0.025 Score=52.80 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 418
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.94 E-value=0.077 Score=49.12 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
...++.|.|.+|+|||+++.+++...... -..++|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 45799999999999999999998876554 33444443
No 419
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.93 E-value=0.007 Score=53.95 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
.++.|+|++|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987654
No 420
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.93 E-value=0.0053 Score=54.14 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 421
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.93 E-value=0.022 Score=55.00 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 163 CNDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 163 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+...+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998887654
No 422
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.93 E-value=0.061 Score=48.79 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|.|||||++.++...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 423
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.92 E-value=0.054 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998743
No 424
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.92 E-value=0.073 Score=45.63 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCChhHHHHHHHH
Q 038919 147 GIESRLEKLKFLMGAGC-NDVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 147 GR~~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
|.+..++.+.+.+.... .....+++.|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44444555555443211 1235678999999999999999875
No 425
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.92 E-value=0.006 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
+|.|.|++|+||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.92 E-value=0.0055 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 427
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.11 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998643
No 428
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.91 E-value=0.0066 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 429
>PRK13764 ATPase; Provisional
Probab=95.90 E-value=0.031 Score=58.11 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRL 246 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 246 (483)
..+.|+|++|+||||++..+++.+.........+.+..+..-.... .++ . ....+... .....|
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i---------~q~-~---~~~~~~~~---~~~~lL 321 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEI---------TQY-S---KLEGSMEE---TADILL 321 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcc---------eEE-e---eccccHHH---HHHHHH
Confidence 4589999999999999999998876543222244332222111000 000 0 00011111 222336
Q ss_pred hcCceEEEEcCCCCHHHHHHH
Q 038919 247 RQKKVLLVIDDVAHVEQLRRL 267 (483)
Q Consensus 247 ~~~~~LlVlDdv~~~~~~~~l 267 (483)
+.+|=.+++|.+.+.+.++.+
T Consensus 322 R~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 322 LVRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hhCCCEEEECCCCCHHHHHHH
Confidence 788999999999998887764
No 430
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.90 E-value=0.056 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
...++|+|..|.|||||.+.++-.....
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 3579999999999999999999766443
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.39 Score=45.34 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-------------cceeEEEEecccccccCCcHHHHHHH
Q 038919 153 EKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-------------FDGSSFLADVKEKYDKEGSVISLQKQ 219 (483)
Q Consensus 153 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (483)
+.|...+..+ .-.....++|+.|+||+++|..++..+--. .+...++...
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~---------------- 69 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ---------------- 69 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----------------
Confidence 4455555532 225678899999999999999999865321 1111111100
Q ss_pred HHHHHhcccCCCccchhhhHHHHHHHHh-----cCceEEEEcCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCCH-hHHh
Q 038919 220 LISDLLKLADNSIRNVYDGINMIGRRLR-----QKKVLLVIDDVAH--VEQLRRLAGKRDWFGPGSRIIITTRDE-HLLK 291 (483)
Q Consensus 220 ll~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~ 291 (483)
.....-.+++ +..+.+.+. ++.=++|+|+++. .+....++..+..-.+++.+|++|.++ .+++
T Consensus 70 --------~~~~~I~idq-iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 70 --------GKGRLHSIET-PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred --------CCCCcCcHHH-HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 0000001111 122222222 3445889999974 456666666655546677776666654 3433
Q ss_pred h-CCCcceEecCCC
Q 038919 292 L-HRVEEVFKLEAL 304 (483)
Q Consensus 292 ~-~~~~~~~~l~~L 304 (483)
. ......+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 3 233456777765
No 432
>PRK06217 hypothetical protein; Validated
Probab=95.89 E-value=0.0061 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|+|.|.+|+||||||+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 433
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.052 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 434
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.89 E-value=0.0056 Score=55.75 Aligned_cols=25 Identities=48% Similarity=0.668 Sum_probs=22.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999988753
No 435
>PHA02244 ATPase-like protein
Probab=95.86 E-value=0.024 Score=54.91 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=31.8
Q ss_pred HhhhchhHHHH----HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLE----KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~----~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++|...... .+..++..+ ..|.|+|++|+|||+||+++++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45667655443 344444432 34788999999999999999987543
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.86 E-value=0.0062 Score=54.61 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.85 E-value=0.015 Score=52.87 Aligned_cols=24 Identities=25% Similarity=-0.035 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..++++|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999998886
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.84 E-value=0.029 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
..+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999987
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.84 E-value=0.016 Score=50.32 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++++|+|..|+|||||++.+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887653
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.062 Score=48.05 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=56.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc----cceeEEEEeccc-cccc-CCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE----FDGSSFLADVKE-KYDK-EGSVISLQKQLISDLLKLADNSIRNVYDGINM 241 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~-~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 241 (483)
-..|.|+||+|||||.+.+++-++.. .+..+-+.+-+. .... .+. .+ ..+... ....+..-...-
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gv-pq--~~~g~R------~dVld~cpk~~g 209 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGV-PQ--HGRGRR------MDVLDPCPKAEG 209 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCC-ch--hhhhhh------hhhcccchHHHH
Confidence 36789999999999999999876654 233344432221 1100 000 00 000000 000111111111
Q ss_pred HHHHH-hcCceEEEEcCCCCHHHHHHHhcCCCCCCCCcEEEEEcCC
Q 038919 242 IGRRL-RQKKVLLVIDDVAHVEQLRRLAGKRDWFGPGSRIIITTRD 286 (483)
Q Consensus 242 l~~~l-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~ 286 (483)
+-... ...|=++|+|.+-..++..++...+ ..|.+++.|..-
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 11222 3467899999997766655555443 468888877763
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.007 Score=51.50 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 038919 168 MIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~ 187 (483)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 442
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.83 E-value=0.079 Score=46.70 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+++|.|+.|.|||||.+.++....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 443
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.82 E-value=0.02 Score=59.77 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=42.1
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+..+-|.+..+.|.++.........+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 67788888888888887765555679999999999999999999998865
No 444
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.82 E-value=0.012 Score=57.31 Aligned_cols=49 Identities=33% Similarity=0.351 Sum_probs=39.5
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccc
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 195 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 195 (483)
..++|.+..+..+...+..+ +.+.+.|++|+|||+||+.++..+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34888888888877766643 46899999999999999999998875543
No 445
>PF13479 AAA_24: AAA domain
Probab=95.80 E-value=0.023 Score=51.59 Aligned_cols=20 Identities=50% Similarity=0.541 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCChhHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVV 186 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~ 186 (483)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999987
No 446
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.80 E-value=0.18 Score=45.92 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..+++|.|+.|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998864
No 447
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.80 E-value=0.014 Score=50.83 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEec
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV 203 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 203 (483)
...|.|-|++|+|||+|..+.+..++++|...+.-.++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 47899999999999999999999999998877766544
No 448
>PRK14529 adenylate kinase; Provisional
Probab=95.79 E-value=0.069 Score=48.52 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=47.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHhhccc-ceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLISHEF-DGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRRLR 247 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 247 (483)
|.|.|++|+||||+++.++.++.-.+ ..+-.+ ++............+.+ +... ...+.+.....+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~----i~~G--~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEY----IDRG--DLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHH----Hhcc--CcchHHHHHHHHHHHHh
Confidence 78899999999999999998764321 111111 11111111112222222 2221 22233444555666664
Q ss_pred cC-ceEEEEcCC-CCHHHHHHHh
Q 038919 248 QK-KVLLVIDDV-AHVEQLRRLA 268 (483)
Q Consensus 248 ~~-~~LlVlDdv-~~~~~~~~l~ 268 (483)
+. .-=+|||.+ .+.+|.+.|.
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHHHHH
Confidence 32 345899999 4666655543
No 449
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.79 E-value=0.032 Score=53.61 Aligned_cols=86 Identities=24% Similarity=0.222 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccc-ee-EEEEecccccc-cCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFD-GS-SFLADVKEKYD-KEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~-~~~~~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
..+.|+|..|+||||++.++...+....+ .. +-+.+..+..- .... .. ....+.......++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~------------v~---l~~~~~~~~~~lv~ 209 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENA------------VA---LHTSDTVDMARLLK 209 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCE------------EE---eccCCCcCHHHHHH
Confidence 35789999999999999999887643221 12 22222211110 0000 00 00111223456678
Q ss_pred HHHhcCceEEEEcCCCCHHHHHHH
Q 038919 244 RRLRQKKVLLVIDDVAHVEQLRRL 267 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~~~~~~l 267 (483)
..++..+-.||+..+.+.+.+..+
T Consensus 210 ~aLR~~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 210 STMRLRPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred HHhCCCCCEEEEeecCCHHHHHHH
Confidence 888999999999999888766543
No 450
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.78 E-value=0.011 Score=52.18 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEE
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 200 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 200 (483)
.++++|+|+.|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 37899999999999999999999888777544443
No 451
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.78 E-value=0.027 Score=57.40 Aligned_cols=41 Identities=20% Similarity=0.053 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccc-eeEEEEeccc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVKE 205 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~ 205 (483)
..+..+|+|++|+|||||+..+++.+...++ ..+++.-+.+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE 456 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE 456 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC
Confidence 3467899999999999999999998755333 3344444443
No 452
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.015 Score=60.35 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
.+++++|++|.||||+|.-+.+
T Consensus 495 e~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987665
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.77 E-value=0.007 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.++|+|++|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865443
No 454
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.76 E-value=0.15 Score=50.92 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876554
No 455
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.75 E-value=0.0093 Score=53.79 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=24.1
Q ss_pred cCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 161 AGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 161 ~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
......+.++|+|++|+|||||+..+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998754
No 456
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.75 E-value=0.014 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCChhHHHHHHH
Q 038919 167 RMIGIWGMGGLGKTTLARVVY 187 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~ 187 (483)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 457
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.75 E-value=0.017 Score=51.77 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=28.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVK 204 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 204 (483)
.|+|+|-||+||||+|..++.++.+.-...+...+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997877766544455655443
No 458
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.73 E-value=0.031 Score=59.18 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++|+|..|+|||||++.+...+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999888643
No 459
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.73 E-value=0.044 Score=57.26 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++|+|+.|+|||||++.+..-+
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999987643
No 460
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.72 E-value=0.013 Score=56.24 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=43.5
Q ss_pred HhhhchhHHHHHHHHHhhcCC----CCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGAGC----NDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..|+|.++.++++.+.|.... ...+++.+.||.|.|||||+..+.+-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 479999999999999887522 347899999999999999999998877765
No 461
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.72 E-value=0.046 Score=50.61 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+|+|.|.+|+||||++..+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999887654
No 462
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.0093 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+-|.|+|.||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568999999999999999999743
No 463
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.70 E-value=0.027 Score=53.27 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+.+|+|.|.+|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999988776655
No 464
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.70 E-value=0.019 Score=55.62 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.-++.|+|.+|.||||+.+.+....
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHh
Confidence 3579999999999999999988654
No 465
>PRK13949 shikimate kinase; Provisional
Probab=95.70 E-value=0.0089 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhh
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.|.|+|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 466
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.69 E-value=0.019 Score=60.38 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=47.0
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEec
Q 038919 139 SEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADV 203 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 203 (483)
..+...++|.++.++.+...+... +.+.++|++|+|||++|+.+++.+... |...+++.|.
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 356689999999998888887743 356699999999999999999987654 3444555544
No 467
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.69 E-value=0.014 Score=53.30 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVK 204 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 204 (483)
.+.++.++||+|+||||+.+.+...+...... .++.|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 35688899999999999999999888776543 3344443
No 468
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.69 E-value=0.061 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+.++|.|.+|+|||+|+.+++....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~ 163 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV 163 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 347899999999999999999987764
No 469
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.69 E-value=0.078 Score=57.40 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=54.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccccCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHHH-
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYDKEGSVISLQKQLISDLLKLADNSIRNVYDGINMIGRR- 245 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~- 245 (483)
+++.|.|.+|+||||++..+...+...-..+.+.. . .......+....+ ....++......+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A-p----------Tg~Aa~~L~~~~g---~~a~Ti~~~~~~~~~~~ 434 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA-L----------SGKAAEGLQAESG---IESRTLASLEYAWANGR 434 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe-C----------cHHHHHHHHhccC---CceeeHHHHHhhhccCc
Confidence 58899999999999999999877665422222221 1 1112222222111 1112222211111000
Q ss_pred -HhcCceEEEEcCCC--CHHHHHHHhcCCCCCCCCcEEEEEcCCH
Q 038919 246 -LRQKKVLLVIDDVA--HVEQLRRLAGKRDWFGPGSRIIITTRDE 287 (483)
Q Consensus 246 -l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTtR~~ 287 (483)
.-.+.-|||+|++. +...+..++.... ..|+++|+.--..
T Consensus 435 ~~~~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD~~ 477 (744)
T TIGR02768 435 DLLSDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGDPE 477 (744)
T ss_pred ccCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECChH
Confidence 01245699999994 4455556654322 3578888776433
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.68 E-value=0.01 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..++.|.|.+|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 471
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.67 E-value=0.0096 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 472
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.66 E-value=0.063 Score=54.19 Aligned_cols=41 Identities=32% Similarity=0.467 Sum_probs=28.8
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEeccc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKE 205 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 205 (483)
..+.++|.|.+|+|||+|+..++..+.......+.+.-+.+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGE 200 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGE 200 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 35789999999999999999988875433233344443443
No 473
>PRK13948 shikimate kinase; Provisional
Probab=95.65 E-value=0.011 Score=52.06 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
....|.++|+.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3578999999999999999999987643
No 474
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.63 E-value=0.023 Score=51.29 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
.+.++|.|.+|+|||+|+.++++.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred CCEEEEEcCcccccchhhHHHHhccccc
Confidence 3679999999999999999999977543
No 475
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.63 E-value=0.017 Score=56.99 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=38.1
Q ss_pred HhhhchhHHHHHHHHHhhc---------CC---CCcEEEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 143 KELVGIESRLEKLKFLMGA---------GC---NDVRMIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~---------~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
..++|.+...+.+..++.. .. .....+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4578888888887766632 00 114678999999999999999999876543
No 476
>PRK14530 adenylate kinase; Provisional
Probab=95.63 E-value=0.0098 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.|.|.|++|+||||+|+.++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999866
No 477
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.63 E-value=0.017 Score=52.20 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 163 CNDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 163 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..++++++++|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999999999987654
No 478
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.63 E-value=0.023 Score=52.02 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 150 SRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 150 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+.+.+...+... .+..|+|++|.|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3455566666532 378999999999998888877766
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.62 E-value=0.048 Score=59.16 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHH
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYD 188 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~ 188 (483)
+.+++.|+|+.+.||||+.+.++-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 357899999999999999998874
No 480
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.01 Score=52.35 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999876
No 481
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.61 E-value=0.024 Score=59.62 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=47.1
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEEe
Q 038919 139 SEILKELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLAD 202 (483)
Q Consensus 139 ~~~i~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 202 (483)
+.....++|.+..++.|...+... +.+.|+|++|+||||+|+.+++.+... +....|..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 345588999999999888877743 468999999999999999999876433 355666664
No 482
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.60 E-value=0.0078 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHh
Q 038919 169 IGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 169 v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
++|+|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.59 E-value=0.014 Score=53.57 Aligned_cols=47 Identities=28% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcc-cceeEEEE
Q 038919 155 LKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 201 (483)
Q Consensus 155 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 201 (483)
|.++|..+-....++.|.|++|+|||+|+.+++...... -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 445554433346799999999999999999988765544 44555554
No 484
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.58 E-value=0.067 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++|+|+.|+|||||++-+...+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4679999999999999999988765
No 485
>PRK14527 adenylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 165 DVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 165 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++.|.|++|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 486
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.56 E-value=0.082 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.++|.|-+|+|||+|+..++++..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhh
Confidence 46789999999999999999887653
No 487
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.55 E-value=0.046 Score=44.33 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=34.0
Q ss_pred HhhhchhHH----HHHHHHHhhcC-CCCcEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 143 KELVGIESR----LEKLKFLMGAG-CNDVRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 143 ~~~vGR~~~----l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
.+++|-.-. ++.|...+... +.++-++..+|.+|+|||-+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 456666544 44455555443 3446788899999999999999999874
No 488
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.51 E-value=0.032 Score=59.05 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...++|+|+.|+|||||++.++..+
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3568999999999999999998743
No 489
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.51 E-value=0.036 Score=57.20 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.3
Q ss_pred HhhhchhHHHHHHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHH
Q 038919 143 KELVGIESRLEKLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDL 189 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 189 (483)
..++|....++++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999998888876542233467999999999999999999876
No 490
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.50 E-value=0.0099 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
+-+.++|++|+|||++++.+...+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc
Confidence 67899999999999999998876543
No 491
>PRK13946 shikimate kinase; Provisional
Probab=95.49 E-value=0.012 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
.+.|.+.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999873
No 492
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.48 E-value=0.034 Score=49.83 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCChhHHHHHHHHHhh
Q 038919 164 NDVRMIGIWGMGGLGKTTLARVVYDLIS 191 (483)
Q Consensus 164 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 191 (483)
..+.++.|.|.+|+||||++..+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 4578889999999999999999988664
No 493
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.48 E-value=0.018 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc
Q 038919 168 MIGIWGMGGLGKTTLARVVYDLISHE 193 (483)
Q Consensus 168 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 193 (483)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988765
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.48 E-value=0.03 Score=51.28 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEE
Q 038919 154 KLKFLMGAGCNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 201 (483)
Q Consensus 154 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 201 (483)
.|.+.|..+-....++.|.|.+|+|||+++.+++......-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555443334679999999999999999999876544433444443
No 495
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.47 E-value=0.023 Score=56.73 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.8
Q ss_pred HhhhchhHHHHHHHHHhhc-------C-C------CCcEEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 143 KELVGIESRLEKLKFLMGA-------G-C------NDVRMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 143 ~~~vGR~~~l~~l~~~L~~-------~-~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..+||.+...+.+...+.. . . .....+.++|++|+|||+||+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4678888888877554311 0 0 01356899999999999999999986643
No 496
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.46 E-value=0.039 Score=53.53 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=53.0
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHhhcccceeEEEEecccccc--cCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVKEKYD--KEGSVISLQKQLISDLLKLADNSIRNVYDGINMIG 243 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 243 (483)
...+.|+|..|+||||++..+...+.... ..+.+.+..+..- ..+. .. +...............+.++
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~-ri~tiEd~~El~l~~~~n~-~~--------~~~~~~~~~~~~~~~~~ll~ 229 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHPNR-VH--------LLASKGGQGRAKVTTQDLIE 229 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCC-eEEEecCCCccccccCCCE-EE--------EEecCCCCCcCcCcHHHHHH
Confidence 35799999999999999999988765432 2222222211110 0000 00 00000001111123456778
Q ss_pred HHHhcCceEEEEcCCCCHHHHHHH
Q 038919 244 RRLRQKKVLLVIDDVAHVEQLRRL 267 (483)
Q Consensus 244 ~~l~~~~~LlVlDdv~~~~~~~~l 267 (483)
..++..+=.||+..+.+.+.+..+
T Consensus 230 ~~LR~~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 230 ACLRLRPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred HHhccCCCeEEEEecCCHHHHHHH
Confidence 888999999999999888776543
No 497
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.46 E-value=0.088 Score=50.60 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
..+++|.|+.|+|||||.+.++.-+
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998744
No 498
>PLN02674 adenylate kinase
Probab=95.46 E-value=0.12 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
...+.|.|++|+||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999998854
No 499
>PLN02200 adenylate kinase family protein
Probab=95.45 E-value=0.014 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCChhHHHHHHHHHh
Q 038919 166 VRMIGIWGMGGLGKTTLARVVYDLI 190 (483)
Q Consensus 166 ~~~v~I~G~~GiGKTtLa~~~~~~~ 190 (483)
+.++.|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998854
No 500
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.45 E-value=0.12 Score=45.97 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc
Q 038919 167 RMIGIWGMGGLGKTTLARVVYDLISH 192 (483)
Q Consensus 167 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 192 (483)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988765
Done!